Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 102 of 135
Found at i:37883353 original size:7 final size:7
Alignment explanation
Indices: 37883269--37883359 Score: 51
Period size: 7 Copynumber: 12.4 Consensus size: 7
37883259 GGGGTATGGA
37883269 TTTAGGG
1 TTTAGGG
37883276 TTT-GGG
1 TTTAGGG
*
37883282 ATTTAAGG
1 -TTTAGGG
37883290 TTTAGGG
1 TTTAGGG
*
37883297 GTTA-GG
1 TTTAGGG
* *
37883303 TGTTATGC
1 T-TTAGGG
37883311 TTTAAGAGG
1 TTT-AG-GG
37883320 ATTTAGGG
1 -TTTAGGG
*
37883328 GTTAGGG
1 TTTAGGG
* *
37883335 ATTATGGA
1 TTTA-GGG
37883343 TTTAGGG
1 TTTAGGG
37883350 TTTAGGG
1 TTTAGGG
37883357 TTT
1 TTT
37883360 CAACGGTAAG
Statistics
Matches: 64, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
6 5 0.08
7 41 0.64
8 12 0.19
9 3 0.05
10 3 0.05
ACGTcount: A:0.20, C:0.01, G:0.37, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:37886478 original size:21 final size:21
Alignment explanation
Indices: 37886428--37886478 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
37886418 CTACAACTTA
* * *
37886428 AAGCAGACGCGGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGAG
37886449 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
*
37886470 AAGCGGAGG
1 AAGCAGAGG
37886479 TTCAAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.47, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGAG
Found at i:37886906 original size:42 final size:42
Alignment explanation
Indices: 37886859--37887141 Score: 428
Period size: 42 Copynumber: 6.8 Consensus size: 42
37886849 GTTTTTGTAT
** *
37886859 AAAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGTGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
*
37886901 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGTGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
*
37886943 AAAGAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
*
37886985 AAAAAATCGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
* *
37887027 AAAAAATCACCGCTAAAGACCATG-TCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
* *
37887068 -AAAAAACGCCACTAAAGACCATGTTCTTTAGCGACGCTTA-
1 AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
* *
37887108 AGAAAAAACGCCGCTAAAGAACATGATCTTTAGC
1 A-AAAAAACGCCGCTAAAGACCATGTTCTTTAGC
37887142 AGCGTTTTTC
Statistics
Matches: 224, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
40 20 0.09
41 32 0.14
42 172 0.77
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
Found at i:37887123 original size:124 final size:125
Alignment explanation
Indices: 37886860--37887141 Score: 444
Period size: 124 Copynumber: 2.3 Consensus size: 125
37886850 TTTTTGTATA
* *
37886860 AAAAAACGCCGCTAAAGATA-ATGTTCTTTAGCGGTGCTTAGAAAAAAACGCCGCTAAAGACCAT
1 AAAAAACGCCGCTAAAGA-ACATGTTCTTTAGCGGCGCTTAGAAAAAAACACCGCTAAAGACCAT
* * *
37886924 GTTCTTTAGCGGTGCTTAGAAAGAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
65 GTTCTTTAGCGGCGCTTAGAAAGAAACGCCACTAAAGACCATGTTCTTTAGCGACGCTTAG
* *
37886985 AAAAAATCGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAATCACCGCTAAAGACCAT
1 AAAAAA-CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACACCGCTAAAGACCAT
37887050 G-TCTTTAGCGGCGCTTAGAAA-AAACGCCACTAAAGACCATGTTCTTTAGCGACGCTTAAG
65 GTTCTTTAGCGGCGCTTAGAAAGAAACGCCACTAAAGACCATGTTCTTTAGCGACGCTT-AG
*
37887110 AAAAAACGCCGCTAAAGAACATGATCTTTAGC
1 AAAAAACGCCGCTAAAGAACATGTTCTTTAGC
37887142 AGCGTTTTTC
Statistics
Matches: 145, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
124 58 0.40
125 33 0.23
126 54 0.37
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (125 bp):
AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACACCGCTAAAGACCATG
TTCTTTAGCGGCGCTTAGAAAGAAACGCCACTAAAGACCATGTTCTTTAGCGACGCTTAG
Found at i:37887164 original size:166 final size:168
Alignment explanation
Indices: 37886859--37887186 Score: 437
Period size: 166 Copynumber: 2.0 Consensus size: 168
37886849 GTTTTTGTAT
* * * *
37886859 AAAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGTGCTTAGAAAAAAACGCCGCTAAAGACCAT
1 AAAAAAACACCGCTAAAGACAATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGACCAT
** * * *
37886924 GTTCTTTAGCGGTGCTTAGAAAGAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAA
66 GTTCTTTAGCGACGCTTAGAAAGAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAGAAAA
* * *
37886989 AATCGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAG
131 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTAG
* *
37887027 AAAAAATCACCGCTAAAGACCATG-TCTTTAGCGGCGCTTAG-AAAAAACGCCACTAAAGACCAT
1 AAAAAAACACCGCTAAAGACAATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGACCAT
* *****
37887090 GTTCTTTAGCGACGCTTAAGAAA-AAACGCCGCTAAAGAACATGATCTTTAGCAGCGTTTTTCTC
66 GTTCTTTAGCGACGCTT-AGAAAGAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAGAAA
*
37887154 TAAGCGCCGCTAAAGAACATGGTCTTTAGCGGC
130 AAAGCGCCGCTAAAGAACATGGTCTTTAGCGGC
37887187 ATTTTTATTT
Statistics
Matches: 138, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
166 97 0.70
167 21 0.15
168 20 0.14
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (168 bp):
AAAAAAACACCGCTAAAGACAATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGACCAT
GTTCTTTAGCGACGCTTAGAAAGAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAGAAAA
AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTAG
Found at i:37887957 original size:28 final size:28
Alignment explanation
Indices: 37887917--37887985 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
37887907 AATAGCCTTT
*
37887917 TCCCAACATTTAATACGTTAATG-CATTA
1 TCCCTACATTTAATACGTTAATGTC-TTA
* * *
37887945 TCCCTACATTTAATGCTTTAATGTCTTT
1 TCCCTACATTTAATACGTTAATGTCTTA
*
37887973 TCCCTGCATTTAA
1 TCCCTACATTTAA
37887986 ACCCTAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (28 bp):
TCCCTACATTTAATACGTTAATGTCTTA
Found at i:37892266 original size:32 final size:32
Alignment explanation
Indices: 37892214--37892294 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
37892204 CCAAATTTTT
* * *
37892214 ACCACAAAGACGTTCCTTTACATAT-AGTAATC
1 ACCACAAAGGCATTCCTTTACAT-TCAATAATC
* *
37892246 ACCACAAAGGCATTCTTTTACATTCAATACTC
1 ACCACAAAGGCATTCCTTTACATTCAATAATC
*
37892278 ACCACAAAGGCTTTCCT
1 ACCACAAAGGCATTCCT
37892295 GTCCAGATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 1 0.02
32 40 0.98
ACGTcount: A:0.35, C:0.28, G:0.09, T:0.28
Consensus pattern (32 bp):
ACCACAAAGGCATTCCTTTACATTCAATAATC
Found at i:37892337 original size:60 final size:61
Alignment explanation
Indices: 37892249--37892413 Score: 206
Period size: 60 Copynumber: 2.7 Consensus size: 61
37892239 AGTAATCACC
* * * *
37892249 ACAAAGGCATTCTTTTACATTCAATACTCACCACAAAGGCTTTCCTGTCCAGATTTTTAC-
1 ACAAAGGCATTCTTTTACATTCAGTACTCACCACAAAGGCTTTCCTATCCAAAGTTTTACA
* * * * * *
37892309 ATAAAGGAATTCATTTACATTTAGTACTCACGACAAAGGCTTTCCTATCCAAAGTTTTGCA
1 ACAAAGGCATTCTTTTACATTCAGTACTCACCACAAAGGCTTTCCTATCCAAAGTTTTACA
* *
37892370 ACAAAGGCATTCTTTTACATCCAGTACTCGCCACAAAAGGCTTT
1 ACAAAGGCATTCTTTTACATTCAGTACTCACCAC-AAAGGCTTT
37892414 TCCTTTCCTG
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
60 50 0.58
61 27 0.31
62 9 0.10
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (61 bp):
ACAAAGGCATTCTTTTACATTCAGTACTCACCACAAAGGCTTTCCTATCCAAAGTTTTACA
Found at i:37892606 original size:53 final size:53
Alignment explanation
Indices: 37892536--37892636 Score: 148
Period size: 53 Copynumber: 1.9 Consensus size: 53
37892526 AAATTCTTCC
* ** *
37892536 ATATGATGTCATAATCCACCAGTTATGGTCTTACATGATATAGTCTTCTGTAT
1 ATATGATGCCATAATCCACCAGTTAAAGTCTTACACGATATAGTCTTCTGTAT
* *
37892589 ATATGATGCCATAATCCACCAGTTAAAGTCTTATACGATATGGTCTTC
1 ATATGATGCCATAATCCACCAGTTAAAGTCTTACACGATATAGTCTTC
37892637 AGTGCTGTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (53 bp):
ATATGATGCCATAATCCACCAGTTAAAGTCTTACACGATATAGTCTTCTGTAT
Found at i:37896960 original size:101 final size:101
Alignment explanation
Indices: 37896780--37896971 Score: 303
Period size: 101 Copynumber: 1.9 Consensus size: 101
37896770 TGAGCATCTG
* * * * *
37896780 CTTGTAGTGGTATGGGGATTAAACTCTGAGTTTGCGACCTCTCCACCCGTTTCAGCAAGTCCTTT
1 CTTGCAGTGGTATGGGGATTAAACTCTGAGTTTGCGACCTCTCCACCCGTTCCAACAAGTCCCTA
37896845 ACCATATGTTCTTTGGATCCACACTTGCTTTACCTA
66 ACCATATGTTCTTTGGATCCACACTTGCTTTACCTA
* * *
37896881 CTTGCAGTGGTATGGGGATTAAACTCTGAGTTTGTGACCTCTCCACGCGTTCCAACCAGTCCCTA
1 CTTGCAGTGGTATGGGGATTAAACTCTGAGTTTGCGACCTCTCCACCCGTTCCAACAAGTCCCTA
*
37896946 AGCATATGTTCTTTGGATCCACACTT
66 ACCATATGTTCTTTGGATCCACACTT
37896972 TAAGCATCCT
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 82 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (101 bp):
CTTGCAGTGGTATGGGGATTAAACTCTGAGTTTGCGACCTCTCCACCCGTTCCAACAAGTCCCTA
ACCATATGTTCTTTGGATCCACACTTGCTTTACCTA
Found at i:37901671 original size:3 final size:3
Alignment explanation
Indices: 37901663--37901730 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
37901653 CCGACTCAAA
*
37901663 AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
37901711 AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AA
37901731 AGAGTACTAG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37905265 original size:5 final size:5
Alignment explanation
Indices: 37905255--37905293 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
37905245 ACCTAGGATG
* *
37905255 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
37905294 GCTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:37905878 original size:24 final size:24
Alignment explanation
Indices: 37905831--37905878 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
37905821 TTCTCGATAT
* *
37905831 ATGGCTATTTGGAGTTTCCCGTTA
1 ATGGCTATTTGGAGCTACCCGTTA
* *
37905855 ATGGCTTTTTGGAGCTACCTGTTA
1 ATGGCTATTTGGAGCTACCCGTTA
37905879 TTGACTTGCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.42
Consensus pattern (24 bp):
ATGGCTATTTGGAGCTACCCGTTA
Found at i:37907745 original size:5 final size:5
Alignment explanation
Indices: 37907735--37907766 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
37907725 CCTATTGTAA
37907735 TATTT TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TATTT TA
37907767 AATATTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:37912438 original size:27 final size:27
Alignment explanation
Indices: 37912385--37912496 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
37912375 AAAGACATTC
* *
37912385 CTTTCAAAGTTCGCCACAAAGGCTATT
1 CTTTCAGAGTTTGCCACAAAGGCTATT
** * *
37912412 CTTTCAGAGTTTGCCGTAAGGGTTATT
1 CTTTCAGAGTTTGCCACAAAGGCTATT
* * *
37912439 CTTTTAGAGTTCGCCACAAAGGCTATC
1 CTTTCAGAGTTTGCCACAAAGGCTATT
37912466 CTTTCAGAGTTTGCCACAAAGGCTATT
1 CTTTCAGAGTTTGCCACAAAGGCTATT
37912493 CTTT
1 CTTT
37912497 AGCTGTCATG
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
CTTTCAGAGTTTGCCACAAAGGCTATT
Found at i:37912493 original size:54 final size:54
Alignment explanation
Indices: 37912392--37912496 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
37912382 TTCCTTTCAA
* ** * *
37912392 AGTTCGCCACAAAGGCTATTCTTTCAGAGTTTGCCGTAAGGGTTATTCTTTTAG
1 AGTTCGCCACAAAGGCTATCCTTTCAGAGTTTGCCACAAAGGCTATTCTTTTAG
37912446 AGTTCGCCACAAAGGCTATCCTTTCAGAGTTTGCCACAAAGGCTATTCTTT
1 AGTTCGCCACAAAGGCTATCCTTTCAGAGTTTGCCACAAAGGCTATTCTTT
37912497 AGCTGTCATG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (54 bp):
AGTTCGCCACAAAGGCTATCCTTTCAGAGTTTGCCACAAAGGCTATTCTTTTAG
Found at i:37919483 original size:2 final size:2
Alignment explanation
Indices: 37919476--37919503 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37919466 CCAAGGAATG
37919476 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37919504 ACCAACTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:37919543 original size:40 final size:41
Alignment explanation
Indices: 37919483--37919563 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 41
37919473 ATGTATATAT
37919483 ATATATATATATATATATATAACCAACTTTATTTACTACAC
1 ATATATATATATATATATATAACCAACTTTATTTACTACAC
37919524 ATATATATAT-TATATATATAACCAACTTTATTTACTACAC
1 ATATATATATATATATATATAACCAACTTTATTTACTACAC
37919564 TCCCAACTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 30 0.75
41 10 0.25
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (41 bp):
ATATATATATATATATATATAACCAACTTTATTTACTACAC
Found at i:37930269 original size:17 final size:17
Alignment explanation
Indices: 37930247--37930280 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37930237 AGTCCTGGAA
37930247 ATGATTTTAAGTCATAT
1 ATGATTTTAAGTCATAT
37930264 ATGATTTTAAGTCATAT
1 ATGATTTTAAGTCATAT
37930281 TAAAATTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (17 bp):
ATGATTTTAAGTCATAT
Found at i:37934857 original size:25 final size:25
Alignment explanation
Indices: 37934829--37934879 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
37934819 TAGCTACGTT
*
37934829 CCGACCCACAGCTTGTGAGAGCATA
1 CCGACCCACAGCTCGTGAGAGCATA
***
37934854 CCGATTTACAGCTCGTGAGAGCATA
1 CCGACCCACAGCTCGTGAGAGCATA
37934879 C
1 C
37934880 TGATTTACAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (25 bp):
CCGACCCACAGCTCGTGAGAGCATA
Found at i:37934884 original size:25 final size:25
Alignment explanation
Indices: 37934836--37934929 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
37934826 GTTCCGACCC
*
37934836 ACAGCTTGTGAGAGCATACCGATTT
1 ACAGCTCGTGAGAGCATACCGATTT
*
37934861 ACAGCTCGTGAGAGCATACTGATTT
1 ACAGCTCGTGAGAGCATACCGATTT
* * * *
37934886 ACAGCTCGAGTGAGCATACCAATTC
1 ACAGCTCGTGAGAGCATACCGATTT
*
37934911 ATAGCTCGT-ATGAGCATAC
1 ACAGCTCGTGA-GAGCATAC
37934930 GTGTACAAGA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (25 bp):
ACAGCTCGTGAGAGCATACCGATTT
Found at i:37936708 original size:37 final size:37
Alignment explanation
Indices: 37936661--37936737 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
37936651 CAGAGTTTGA
37936661 TTTAGGTAGCCCATATCAATTTGTTCAATTATTAAGT
1 TTTAGGTAGCCCATATCAATTTGTTCAATTATTAAGT
37936698 TTTAGGTAGCCCATATCAATTTGTTCAATTATTAAGT
1 TTTAGGTAGCCCATATCAATTTGTTCAATTATTAAGT
37936735 TTT
1 TTT
37936738 TAGCAAGTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (37 bp):
TTTAGGTAGCCCATATCAATTTGTTCAATTATTAAGT
Found at i:37937534 original size:19 final size:19
Alignment explanation
Indices: 37937510--37937594 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
37937500 TGTACGGGTT
37937510 TATGCA-TTTCGTGTGCCAG
1 TATGCACTTT-GTGTGCCAG
** * *
37937529 TATGCACTTCATATGCTAG
1 TATGCACTTTGTGTGCCAG
* * *
37937548 GATGCACTTTTTGTGCTAG
1 TATGCACTTTGTGTGCCAG
*
37937567 TATGCACTTTGTGTGTCAG
1 TATGCACTTTGTGTGCCAG
*
37937586 GATGCACTT
1 TATGCACTT
37937595 CATATGCTAG
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
19 50 0.96
20 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.39
Consensus pattern (19 bp):
TATGCACTTTGTGTGCCAG
Found at i:37946552 original size:18 final size:18
Alignment explanation
Indices: 37946516--37946550 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
37946506 ATTGGGCCGA
37946516 AATGGGCTGTGTAGGCCC
1 AATGGGCTGTGTAGGCCC
*
37946534 AATGGGCT-TGTGGGCCC
1 AATGGGCTGTGTAGGCCC
37946551 CACACAGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.23, G:0.40, T:0.23
Consensus pattern (18 bp):
AATGGGCTGTGTAGGCCC
Found at i:37946811 original size:27 final size:27
Alignment explanation
Indices: 37946780--37947155 Score: 336
Period size: 27 Copynumber: 13.9 Consensus size: 27
37946770 CCCCAAAATA
*
37946780 GGTAAAATGACCAAAATACCCCTGA-AG
1 GGTAAAATGACTAAAATACCCCT-ATAG
*** *
37946807 GGTAAAATGACTATTTTACCCATAATA-
1 GGTAAAATGACTAAAATACCCCT-ATAG
** * *
37946834 TATGAAAATAACTGAAATATCCCC-ATAG
1 GGT-AAAATGACTAAAATA-CCCCTATAG
*
37946862 GGTAAAATGACTAAAATACCCCCATAG
1 GGTAAAATGACTAAAATACCCCTATAG
**
37946889 GGTAAAATGACCGAAATACCCCTATAG
1 GGTAAAATGACTAAAATACCCCTATAG
* *
37946916 GGTAAAAT-AATAGAAATACCCCCATAG
1 GGTAAAATGACTA-AAATACCCCTATAG
37946943 GGTAAAATGACTAAAATACTCCC-ATAG
1 GGTAAAATGACTAAAATAC-CCCTATAG
* * *
37946970 GATAAAATGACCATAATACTCCC-ATAG
1 GGTAAAATGACTAAAATAC-CCCTATAG
**
37946997 GGTAAAATGACCGAAATACCCCTATAG
1 GGTAAAATGACTAAAATACCCCTATAG
* * *
37947024 GGTAAAATGATTGAAATACCCCCATAG
1 GGTAAAATGACTAAAATACCCCTATAG
* *
37947051 GGTAAAATGA-TCGAAATA-CCTTCATAG
1 GGTAAAATGACT-AAAATACCCCT-ATAG
*
37947078 GGTAAAATGTCTAAAATACCCCTATAG
1 GGTAAAATGACTAAAATACCCCTATAG
** **
37947105 GGTAAAATGACCGAAATACCTTTATAG
1 GGTAAAATGACTAAAATACCCCTATAG
**
37947132 GGTAAAATGACTATTATACCCCTA
1 GGTAAAATGACTAAAATACCCCTA
37947156 GGAGATAAAA
Statistics
Matches: 285, Mismatches: 51, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
26 11 0.04
27 249 0.87
28 22 0.08
29 3 0.01
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACTAAAATACCCCTATAG
Found at i:37946920 original size:54 final size:54
Alignment explanation
Indices: 37946780--37947169 Score: 400
Period size: 54 Copynumber: 7.2 Consensus size: 54
37946770 CCCCAAAATA
* *** **
37946780 GGTAAAATGACCAAAATACCCCTGA-AGGGTAAAATGACTATTTTACCCATAATA-
1 GGTAAAATGACCGAAATACCCCT-ATAGGGTAAAATGACTAAAATACCC-CCATAG
** * *
37946834 TATGAAAATAACTGAAATATCCCC-ATAGGGTAAAATGACTAAAATACCCCCATAG
1 GGT-AAAATGACCGAAATA-CCCCTATAGGGTAAAATGACTAAAATACCCCCATAG
*
37946889 GGTAAAATGACCGAAATACCCCTATAGGGTAAAAT-AATAGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACTA-AAATACCCCCATAG
** * * * *
37946943 GGTAAAATGACTAAAATACTCCC-ATAGGATAAAATGACCATAATACTCCCATAG
1 GGTAAAATGACCGAAATAC-CCCTATAGGGTAAAATGACTAAAATACCCCCATAG
* *
37946997 GGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACTAAAATACCCCCATAG
* * * *
37947051 GGTAAAATGATCGAAATA-CCTTCATAGGGTAAAATGTCTAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCT-ATAGGGTAAAATGACTAAAATACCCCCATAG
** **
37947105 GGTAAAATGACCGAAATACCTTTATAGGGTAAAATGACTATTATA-CCCC-TAG
1 GGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACTAAAATACCCCCATAG
37947157 GAGATAAAATGAC
1 G-G-TAAAATGAC
37947170 TGTTATGGCT
Statistics
Matches: 281, Mismatches: 42, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.01
53 17 0.06
54 215 0.77
55 41 0.15
56 4 0.01
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.23
Consensus pattern (54 bp):
GGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACTAAAATACCCCCATAG
Found at i:37947412 original size:26 final size:26
Alignment explanation
Indices: 37947376--37947456 Score: 110
Period size: 26 Copynumber: 3.1 Consensus size: 26
37947366 TTTGCCACAT
37947376 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* * *
37947402 ATACTGA-TACTAGTAGCTCTGCTGCG
1 ATACT-ATTACTGGCAGCTTTGCTGCG
*
37947428 ATGCTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
37947454 ATA
1 ATA
37947457 TTGGTGTGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.02
26 43 0.96
27 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:37947600 original size:28 final size:28
Alignment explanation
Indices: 37947560--37947763 Score: 288
Period size: 28 Copynumber: 7.3 Consensus size: 28
37947550 TTCACTACAA
* *
37947560 TGTTACTGTATTGGGCTAAGGCCAACAT
1 TGTTACTGTATTGGGCTAAGGCCCACAC
*
37947588 TGTTACTGTATTGGGCTAAGGCCCATAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
*
37947616 TGATT-CTGTATTGGGCTAAGGCCCACAG
1 TG-TTACTGTATTGGGCTAAGGCCCACAC
37947644 TGATT-CTGTATTGGGCTAAGGCCCACAC
1 TG-TTACTGTATTGGGCTAAGGCCCACAC
* *
37947672 TGTTACTATATTGGGCTAAGGCCCACAT
1 TGTTACTGTATTGGGCTAAGGCCCACAC
* * *
37947700 TATTACTGTATTGGGCTAAAGCCTACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
37947728 TGTTACTGTATTGGGCTAAGGCCCACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
37947756 TG-TACTGT
1 TGTTACTGT
37947764 CACTTAATAG
Statistics
Matches: 158, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
27 8 0.05
28 148 0.94
29 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (28 bp):
TGTTACTGTATTGGGCTAAGGCCCACAC
Found at i:37963029 original size:138 final size:138
Alignment explanation
Indices: 37962781--37963668 Score: 1280
Period size: 138 Copynumber: 6.4 Consensus size: 138
37962771 ATATATTTTC
* *
37962781 AATTTCGGTCAAACTATAATAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
1 AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
* ** ** *
37962846 TGAATTTGATTTACCCAAAATATTAATTGTATATATTTTACTAAAATTATTAATATAAAAAGTTA
66 TGAATTTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAAAAGTTA
*
37962911 TATTAACT
131 TATTAATT
*
37962919 AATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
1 AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
** *
37962984 TGAATTTGATTGATACAAAATATTAATTGTATATATTTTACTAAAATTATTAATATAAAAAGTTA
66 TGAATTTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAAAAGTTA
*
37963049 TATTAACT
131 TATTAATT
* * * *
37963057 AATTTCAGTCAAAATATAAAAGATATGAAAATTAATATT-TTTTGGAAAGAATATAATTAGTATA
1 AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
* * * * * *
37963121 TGAATTTGATTGATATAAAATATTAATTATATATATATTACTGAATTTATCAATATAAACAGTTA
66 TGAATTTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAAAAGTTA
*
37963186 TATTAATA
131 TATTAATT
* *
37963194 AATTTCGGTTAAAATATAAAAGACATAGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
1 AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
* * * * * * * *
37963259 TGAACTTGATTCATATAAACTTTTAATTGTATACAATTTACCGAGTTTATTAATATAAACAA-TT
66 TGAATTTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAA-AAGTT
37963323 ATATTAATT
130 ATATTAATT
* * * * *
37963332 CATTT-TGCCAAAATATATAAAAGACATGAAAATTAATATTATTTTGGAAAGAATATAATTAATA
1 AATTTCGGTC-AAA-ATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATA
37963396 TATGAATTTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAACAA-
64 TATGAATTTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAA-AAG
37963460 TTATATTAATT
128 TTATATTAATT
* *
37963471 AATTTCGGTCAAATTATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATAAAATTAATATA
1 AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
* *
37963536 TGAATTTGATTGATATAAAATATTAATTGTATATATTTTTACCGAATTTATTAATATAAAAAATT
66 TGAATTTGATTGATACAAAATATTAATTGTATATA-TTTTACCGAATTTATTAATATAAAAAGTT
37963601 ATATTAATT
130 ATATTAATT
* * *
37963610 AATTTTGGTCAAAATATAAAAGATATGGAAATTAATATTCTTTTGGAAACAATATAATT
1 AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATT
37963669 CCTTTTTCTA
Statistics
Matches: 678, Mismatches: 65, Indels: 13
0.90 0.09 0.02
Matches are distributed among these distances:
137 123 0.18
138 342 0.50
139 211 0.31
140 2 0.00
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.40
Consensus pattern (138 bp):
AATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATA
TGAATTTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAAAAGTTA
TATTAATT
Found at i:37963491 original size:277 final size:274
Alignment explanation
Indices: 37962788--37963668 Score: 1289
Period size: 277 Copynumber: 3.2 Consensus size: 274
37962778 TTCAATTTCG
* * *
37962788 GTCAAACTATAATAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTT
1 GTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTT
* ** * *
37962853 GATTTACCCAAAATATTAATTGTATATATTTTACTAAAATTATTAATATAAA-AAGTTATATTAA
66 GATTGATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAA-TTATATTAA
* *
37962917 CTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATA
130 TTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATA
* ** *
37962982 TATGAATTTGATTGATACAAAATATTAATTGTATATATTTTACTAAAATTATTAATATAAAAAGT
195 TATGAATTTGATTGATATAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAAAA-T
* *
37963047 TATATTAACTAATTTCA
259 TATATTAATTAATTT-T
* *
37963064 GTCAAAATATAAAAGATATGAAAATTAATATT-TTTTGGAAAGAATATAATTAGTATATGAATTT
1 GTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTT
* * * * *
37963128 GATTGATATAAAATATTAATTATATATATATTACTGAATTTATCAATATAAACAGTTATATTAAT
66 GATTGATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAATTATATTAAT
* * *
37963193 AAATTTCGGTTAAAATATAAAAGACATAGAAATTAATATTCTTTTGGAAAGAATATAATTAATAT
131 TAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATAT
* * * * * * *
37963258 ATGAACTTGATTCATATAAACTTTTAATTGTATACAATTTACCGAGTTTATTAATATAAACAATT
196 ATGAATTTGATTGATATAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAA-AATT
*
37963323 ATATTAATTCATTTT
260 ATATTAATTAATTTT
* *
37963338 GCCAAAATATATAAAAGACATGAAAATTAATATTATTTTGGAAAGAATATAATTAATATATGAAT
1 GTC-AAA-ATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAAT
*
37963403 TTGATTGATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTA
64 TTGATTGATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAATTATATTA
* *
37963468 ATTAATTTCGGTCAAATTATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATAAAATTAAT
129 ATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAAT
37963533 ATATGAATTTGATTGATATAAAATATTAATTGTATATATTTTTACCGAATTTATTAATATAAAAA
194 ATATGAATTTGATTGATATAAAATATTAATTGTATATA-TTTTACCGAATTTATTAATAT-AAAA
37963598 ATTATATTAATTAATTTT
257 ATTATATTAATTAATTTT
* * *
37963616 GGTCAAAATATAAAAGATATGGAAATTAATATTCTTTTGGAAACAATATAATT
1 -GTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATT
37963669 CCTTTTTCTA
Statistics
Matches: 536, Mismatches: 61, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
274 2 0.00
275 210 0.39
276 56 0.10
277 223 0.42
278 40 0.07
279 5 0.01
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.40
Consensus pattern (274 bp):
GTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTT
GATTGATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAATTATATTAAT
TAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATAT
ATGAATTTGATTGATATAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAAAATTA
TATTAATTAATTTT
Found at i:37967599 original size:16 final size:16
Alignment explanation
Indices: 37967575--37967605 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37967565 AGTACTAGTA
37967575 ATAAAAGAAAAATAAC
1 ATAAAAGAAAAATAAC
*
37967591 ATAAGAGAAAAATAA
1 ATAAAAGAAAAATAA
37967606 ATTTCAAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.03, G:0.10, T:0.13
Consensus pattern (16 bp):
ATAAAAGAAAAATAAC
Found at i:37975882 original size:16 final size:16
Alignment explanation
Indices: 37975861--37975891 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37975851 AGTACTAGTA
*
37975861 ATAAAAGCAAAATAAC
1 ATAAAAGAAAAATAAC
37975877 ATAAAAGAAAAATAA
1 ATAAAAGAAAAATAA
37975892 ACTTTAAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.13
Consensus pattern (16 bp):
ATAAAAGAAAAATAAC
Found at i:37977174 original size:42 final size:42
Alignment explanation
Indices: 37977096--37977179 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
37977086 AGGGTGGAAG
** *
37977096 TAGGTTCTAAAAAAGAAAACTGCCATGGATGGTAATGTACAA
1 TAGGTTCTAAAAAAGAAAACTGCCATGGATAATAATGCACAA
* * *
37977138 TAGGTTTTGAAAAAGAAAATTGCCATGGATAATAATGCACAA
1 TAGGTTCTAAAAAAGAAAACTGCCATGGATAATAATGCACAA
37977180 ACATACAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.25
Consensus pattern (42 bp):
TAGGTTCTAAAAAAGAAAACTGCCATGGATAATAATGCACAA
Found at i:37978407 original size:43 final size:43
Alignment explanation
Indices: 37978344--37978428 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
37978334 ATGTTATTGA
37978344 TATTGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAAG
1 TATTGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAAG
* *
37978387 TATTGAAATGGA-AAATATGAGAAATGAATATGAGATGGGAAA
1 TATTGAAAT-GACAAAGATGAGAAATGAATATGAGATGAGAAA
37978429 TGAAAAATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 37 0.95
44 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.26, T:0.22
Consensus pattern (43 bp):
TATTGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAAG
Found at i:37978460 original size:27 final size:27
Alignment explanation
Indices: 37978403--37978453 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
37978393 AATGGAAAAT
* *
37978403 ATGAGAAATG-AAT-ATGAGATGGGAA
1 ATGAAAAATGAAATGATGAAATGGGAA
37978428 ATGAAAAATGAAATGATGAAATGGGA
1 ATGAAAAATGAAATGATGAAATGGGA
37978454 TGTGAAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.41
26 3 0.14
27 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.29, T:0.20
Consensus pattern (27 bp):
ATGAAAAATGAAATGATGAAATGGGAA
Found at i:37982542 original size:75 final size:75
Alignment explanation
Indices: 37982394--37982542 Score: 210
Period size: 75 Copynumber: 2.0 Consensus size: 75
37982384 ATAGGAATTA
* * * * **
37982394 ATATTCTTTTGGAAAAAATATAATTCATTTTTCTAACTTTTCATTTGCCTTCTCTATTAATGAGG
1 ATATTCTTTTAGAAAAAATATAATTCAATTTTCTAACTTTCCATTTGCCTTCCCTATTAATGAAA
37982459 GAAGAATCCT
66 GAAGAATCCT
*
37982469 ATATTCTTTTAGAAATAATATAATTCAATTTTCTAACTTTCCATTTGCCTTCCCTATTAAT-ACA
1 ATATTCTTTTAGAAAAAATATAATTCAATTTTCTAACTTTCCATTTGCCTTCCCTATTAATGA-A
*
37982533 AGAATAATCC
65 AGAAGAATCC
37982543 ATGTTTTCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
74 1 0.02
75 64 0.98
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (75 bp):
ATATTCTTTTAGAAAAAATATAATTCAATTTTCTAACTTTCCATTTGCCTTCCCTATTAATGAAA
GAAGAATCCT
Found at i:37999267 original size:41 final size:42
Alignment explanation
Indices: 37999208--37999373 Score: 169
Period size: 41 Copynumber: 4.0 Consensus size: 42
37999198 GAGCCTAGCA
* * * * *
37999208 GGTTTTGAGCCCAGTCGGCTTCGTACCGGTGTCTTGGATCAG
1 GGTTTTGTGCCTAGTCGGCTTCGTGCCGGTGTATTGTATCAG
* **
37999250 GGTTTT-TGCCTTGTCGGCTTCGTGCTAGTGTATTGTATCA-
1 GGTTTTGTGCCTAGTCGGCTTCGTGCCGGTGTATTGTATCAG
**
37999290 GGTTTTGTGCCTAGAAGGCTTCGTGCCGGTGTATTGTATCA-
1 GGTTTTGTGCCTAGTCGGCTTCGTGCCGGTGTATTGTATCAG
** * *
37999331 GGCCTTGAGCCTAG-CAGGCTTCGTGTCGGTGTATTGTATCAG
1 GGTTTTGTGCCTAGTC-GGCTTCGTGCCGGTGTATTGTATCAG
37999373 G
1 G
37999374 CAAATTGTAC
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
40 6 0.06
41 90 0.87
42 7 0.07
ACGTcount: A:0.13, C:0.20, G:0.32, T:0.36
Consensus pattern (42 bp):
GGTTTTGTGCCTAGTCGGCTTCGTGCCGGTGTATTGTATCAG
Found at i:38031473 original size:23 final size:23
Alignment explanation
Indices: 38031447--38031490 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
38031437 GAAAACCTAA
*
38031447 AGACTTGCTAGAGAAGCAGACAG
1 AGACGTGCTAGAGAAGCAGACAG
* *
38031470 AGACGTGCTAGGGTAGCAGAC
1 AGACGTGCTAGAGAAGCAGAC
38031491 TACTTTCCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.18, G:0.34, T:0.14
Consensus pattern (23 bp):
AGACGTGCTAGAGAAGCAGACAG
Found at i:38035334 original size:24 final size:24
Alignment explanation
Indices: 38035298--38035351 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
38035288 TCATTATTTA
*
38035298 TTGCTCACAATATCTCACATTTTG
1 TTGCCCACAATATCTCACATTTTG
* *
38035322 TTGCCCACGATATCTCTCATTTTG
1 TTGCCCACAATATCTCACATTTTG
38035346 TGTGCC
1 T-TGCC
38035352 TCTTCTGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.41
Consensus pattern (24 bp):
TTGCCCACAATATCTCACATTTTG
Found at i:38039497 original size:21 final size:18
Alignment explanation
Indices: 38039465--38039510 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 18
38039455 AACAGATAAT
38039465 TATATTTTAAAATATAAAA
1 TATATTTTAAAAT-TAAAA
38039484 TATATGTTATAAAATTAAAA
1 TATAT-TT-TAAAATTAAAA
38039504 TACTATT
1 TA-TATT
38039511 ATTGCATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.21
20 10 0.42
21 9 0.38
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
TATATTTTAAAATTAAAA
Found at i:38041493 original size:65 final size:65
Alignment explanation
Indices: 38041389--38041519 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
38041379 AGTTCTCAAG
38041389 ATAACCATTCACAGGGGAGAGATAACTTATGTTATCAATGTGATACGAAAGATCATTAGTCACAT
1 ATAACCATTCACAGGGGAGAGATAACTTATGTTATCAATGTGATACGAAAGATCATTAGTCACAT
38041454 ATAACCATTCACAGGGGAGAGATAACTTATGTTATCAATGTGATACGAAAGATCATTAGTCACAT
1 ATAACCATTCACAGGGGAGAGATAACTTATGTTATCAATGTGATACGAAAGATCATTAGTCACAT
38041519 A
1 A
38041520 CTTGTTATAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (65 bp):
ATAACCATTCACAGGGGAGAGATAACTTATGTTATCAATGTGATACGAAAGATCATTAGTCACAT
Found at i:38057212 original size:29 final size:31
Alignment explanation
Indices: 38057162--38057236 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 31
38057152 GCTTGATTAA
** * *
38057162 CAGATAGCCATGAA-GGCATCCACTTGAC-T
1 CAGATAGCCACAAAGGGCATCCACATAACAT
* *
38057191 TAGATAGCCA-AAAGGGCGTCCACATAACAT
1 CAGATAGCCACAAAGGGCATCCACATAACAT
38057221 CAGATAGCCACAAAGG
1 CAGATAGCCACAAAGG
38057237 TGTCCTGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
28 2 0.05
29 20 0.54
30 10 0.27
31 5 0.14
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.16
Consensus pattern (31 bp):
CAGATAGCCACAAAGGGCATCCACATAACAT
Found at i:38057341 original size:29 final size:30
Alignment explanation
Indices: 38057278--38057334 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
38057268 AATGCGCTTC
*
38057278 TAACAGAATCAGCCACGAAGGCTCTTCTCA
1 TAACAGAATCAGCCACGAAGGCGCTTCTCA
38057308 TAACAGAATCAGCCAC-AAGG-GCTTCTC
1 TAACAGAATCAGCCACGAAGGCGCTTCTC
38057335 CTTAACAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 6 0.23
29 4 0.15
30 16 0.62
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (30 bp):
TAACAGAATCAGCCACGAAGGCGCTTCTCA
Found at i:38059630 original size:25 final size:23
Alignment explanation
Indices: 38059602--38059647 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
38059592 TGAAAATAAG
38059602 TAAATAAATAAAAGAATAAAAATAT
1 TAAATAAA-AAAA-AATAAAAATAT
*
38059627 TAAATAAAACAAAATAAAAAT
1 TAAATAAAAAAAAATAAAAAT
38059648 CATAATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 3 0.15
25 8 0.40
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (23 bp):
TAAATAAAAAAAAATAAAAATAT
Found at i:38059665 original size:12 final size:12
Alignment explanation
Indices: 38059650--38059679 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
38059640 ATAAAAATCA
38059650 TAATAATAATAG
1 TAATAATAATAG
38059662 TAATAATAATAG
1 TAATAATAATAG
38059674 TAATAA
1 TAATAA
38059680 NNNNNNNNNN
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:38065293 original size:27 final size:27
Alignment explanation
Indices: 38065250--38065394 Score: 175
Period size: 27 Copynumber: 5.4 Consensus size: 27
38065240 CCCTAAAATA
* * *
38065250 GGTATAATGACTGTAATACCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
* * * * *
38065277 GGCAAAATGACCATAATGCCCATATAA
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
38065304 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
38065331 GGTAAAATGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
* * *
38065358 GGTAAAATGATCGTAATGCCCCTGGAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
38065385 GGT-AAATGAC
1 GGTAAAATGAC
38065395 TATATTTCCC
Statistics
Matches: 100, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 6 0.06
27 94 0.94
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCTTGTAG
Found at i:38065585 original size:27 final size:27
Alignment explanation
Indices: 38065542--38065601 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
38065532 GGAAGTTTTG
38065542 TACTGGTGGCTCTGCCACA-ATCACTAT
1 TACTGGTGGCTCTGCCACATAT-ACTAT
38065569 TACTGGTGGCT-TGGCCACATATACTAT
1 TACTGGTGGCTCT-GCCACATATACTAT
38065596 TACTGG
1 TACTGG
38065602 CAGCTTTGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 1 0.03
27 28 0.90
28 2 0.06
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACATATACTAT
Found at i:38065607 original size:27 final size:27
Alignment explanation
Indices: 38065555--38065607 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
38065545 TGGTGGCTCT
**
38065555 GCCACAATCACTATTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
38065582 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
38065608 TGCTGCGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:38065627 original size:26 final size:26
Alignment explanation
Indices: 38065589--38065668 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
38065579 TTGGCCACAT
* *
38065589 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTGTTGCTGGCAGCTTTGCTGCG
*
38065615 ATACTGTTGCTGGCAGCTTTGCTGTG
1 ATACTGTTGCTGGCAGCTTTGCTGCG
* *
38065641 ATACTGTTGCTGGTAGCTTTACTGCG
1 ATACTGTTGCTGGCAGCTTTGCTGCG
38065667 AT
1 AT
38065669 GGTACTGATG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.38
Consensus pattern (26 bp):
ATACTGTTGCTGGCAGCTTTGCTGCG
Found at i:38065712 original size:32 final size:32
Alignment explanation
Indices: 38065671--38065826 Score: 199
Period size: 32 Copynumber: 4.9 Consensus size: 32
38065661 ACTGCGATGG
* *
38065671 TACTGATGGCTTTGTGCCGATAATATTATCGT
1 TACTGATGGCTTTGTGCCGATCATATTATCAT
38065703 TACTGATGGCTTTGTGCCGATCATATTATCAT
1 TACTGATGGCTTTGTGCCGATCATATTATCAT
* *
38065735 TACTGATGGCTTTGTGTCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTATCAT
* * * *
38065767 TACTGATGG-TTGTATGTCGATCATATCA-CTAC
1 TACTGATGGCTT-TGTGCCGATCATATTATC-AT
*
38065799 TACTGATGGCTTTGTGCCAATCATATTA
1 TACTGATGGCTTTGTGCCGATCATATTA
38065827 CTGTACTTAT
Statistics
Matches: 110, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
31 3 0.03
32 105 0.95
33 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTATCAT
Found at i:38065844 original size:64 final size:64
Alignment explanation
Indices: 38065671--38065844 Score: 196
Period size: 64 Copynumber: 2.7 Consensus size: 64
38065661 ACTGCGATGG
* * *
38065671 TACTGATGGCTTTGTGCCGATAATATTA-TCGTTACTGATGGCTT-TGTGCCGATCATATTATCA
1 TACTGATGGCTTTGTGCCGATCATATTACT-G-TACTGATGGCTTGTATGCCGATCATATCATCA
*
38065734 T
64 C
* *
38065735 TACTGATGGCTTTGTGTCGATCATATTACCAT-TACTGATGG-TTGTATGTCGATCATATCA-CT
1 TACTGATGGCTTTGTGCCGATCATATTA-C-TGTACTGATGGCTTGTATGCCGATCATATCATC-
38065797 AC
63 AC
* *
38065799 TACTGATGGCTTTGTGCCAATCATATTACTGTACTTATGGCTTGTA
1 TACTGATGGCTTTGTGCCGATCATATTACTGTACTGATGGCTTGTA
38065845 GCCATTCTGT
Statistics
Matches: 94, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
62 1 0.01
63 12 0.13
64 80 0.85
67 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (64 bp):
TACTGATGGCTTTGTGCCGATCATATTACTGTACTGATGGCTTGTATGCCGATCATATCATCAC
Found at i:38074418 original size:138 final size:139
Alignment explanation
Indices: 38074252--38074808 Score: 783
Period size: 138 Copynumber: 4.1 Consensus size: 139
38074242 GAGAACATAG
* *
38074252 ATATAATTAATATATGAATTTGATTCATACAAAATAATAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
*
38074317 AATATAAACAATTATATTAATTAATTTCGA-TCAAAATATAAAAGATATAGAAATTAATATTCTT
66 AATATAAACAATTATATTAATTAATTTCGAGTCAAAATATAAAAGACATAGAAATTAATATTCTT
38074381 TTGGAAAGA
131 TTGGAAAGA
* * * *
38074390 ATATAATTAATATCTGAATGTGATTCATA-AAAATATTAATTATATATATTTTACCGAATTTAAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* *
38074454 AATATAAATAGA-TATATTAAATAATTTC-AGTCAAAATATAAAAGACAT-GAAAATTAATATTC
66 AATATAAACA-ATTATATTAATTAATTTCGAGTCAAAATATAAAAGACATAG-AAATTAATATTC
* *
38074516 TTTTGAAAAAA
129 TTTTGGAAAGA
* *
38074527 ATATAATTAATATATGAATTTGATTCATAAAAAATATTAA-T-TATATATATTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * * * * *
38074590 AATATAATCAGTTATATTGATTAATTT-TAGTCAAAATATTAAAGACATAGAAATTAATTTTCTT
66 AATATAAACAATTATATTAATTAATTTCGAGTCAAAATATAAAAGACATAGAAATTAATATTCTT
*
38074654 TTGGGAAGA
131 TTGGAAAGA
38074663 ATATAATTAATATAT-AGATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
1 ATATAATTAATATATGA-ATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
* * * * **
38074727 TAATATAAGCAGTTATATTAATTAATTTCG-GCCAAAATATAAATGACACGGAAATTAATATTCT
65 TAATATAAACAATTATATTAATTAATTTCGAGTCAAAATATAAAAGACATAGAAATTAATATTCT
38074791 TTTGGAAAGA
130 TTTGGAAAGA
38074801 ATATAATT
1 ATATAATT
38074809 CTTTTTTCTA
Statistics
Matches: 371, Mismatches: 37, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
135 1 0.00
136 118 0.32
137 123 0.33
138 129 0.35
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (139 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAATTATATTAATTAATTTCGAGTCAAAATATAAAAGACATAGAAATTAATATTCTT
TTGGAAAGA
Found at i:38090232 original size:24 final size:23
Alignment explanation
Indices: 38090179--38090263 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 23
38090169 ATCTTCATCT
* *
38090179 TCTTCATCTTCACCCCGATCCCT-G
1 TCTTCATCTTCA-TCTG-TCCCTCG
*
38090203 TATTCATCTTCATCTAGTCCCTCG
1 TCTTCATCTTCATCT-GTCCCTCG
*
38090227 TCTTCATCTTCATCTCTACCCTCG
1 TCTTCATCTTCATCTGT-CCCTCG
*
38090251 TTTTCATCTTCAT
1 TCTTCATCTTCAT
38090264 TTCCATCTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
23 7 0.13
24 45 0.87
ACGTcount: A:0.14, C:0.38, G:0.06, T:0.42
Consensus pattern (23 bp):
TCTTCATCTTCATCTGTCCCTCG
Found at i:38092211 original size:18 final size:19
Alignment explanation
Indices: 38092188--38092236 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
38092178 AACTTGAGAA
*
38092188 AATTGAGAGAGTTA-AGAG
1 AATTGAGAGAGTTAGACAG
*
38092206 AATTGAGAG-TTTAGACAG
1 AATTGAGAGAGTTAGACAG
*
38092224 AATAGAGAGAGTT
1 AATTGAGAGAGTT
38092237 GGATTTGACC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.80
19 2 0.08
ACGTcount: A:0.43, C:0.02, G:0.31, T:0.24
Consensus pattern (19 bp):
AATTGAGAGAGTTAGACAG
Found at i:38104696 original size:28 final size:27
Alignment explanation
Indices: 38104665--38104717 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
38104655 TTATATTATT
38104665 ATTTT-AAAATTTAAAAATATATAAAAAC
1 ATTTTAAAAATTT-AAAATATA-AAAAAC
*
38104693 ATTTTAAAAATTTTAAATATAAAAA
1 ATTTTAAAAATTTAAAATATAAAAA
38104718 TTAATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 12 0.52
29 7 0.30
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
ATTTTAAAAATTTAAAATATAAAAAAC
Found at i:38106447 original size:23 final size:23
Alignment explanation
Indices: 38106420--38106463 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
38106410 TTTTTGGTTA
38106420 TTACTAATGTT-CCACTTATTATT
1 TTACTAATGTTACCA-TTATTATT
*
38106443 TTACTATTGTTACCATTATTA
1 TTACTAATGTTACCATTATTA
38106464 AATAGTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.27, C:0.16, G:0.05, T:0.52
Consensus pattern (23 bp):
TTACTAATGTTACCATTATTATT
Found at i:38107378 original size:24 final size:25
Alignment explanation
Indices: 38107349--38107396 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
38107339 TTTACATTTT
*
38107349 TAAAAT-TTATATTTTATAATAAAC
1 TAAAATGTGATATTTTATAATAAAC
38107373 TAAAATGTGATATTTTATAATAAA
1 TAAAATGTGATATTTTATAATAAA
38107397 AAAAGTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (25 bp):
TAAAATGTGATATTTTATAATAAAC
Found at i:38109750 original size:24 final size:23
Alignment explanation
Indices: 38109723--38109773 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
38109713 GGTGCTTCCT
38109723 GTTAATTGATCTTCGGAGCTACTC
1 GTTAATTGATCTTCGGAGCTAC-C
* *
38109747 GTTAATTGCTCTTTGGAGCTACC
1 GTTAATTGATCTTCGGAGCTACC
38109770 GTTA
1 GTTA
38109774 TAGGCTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (23 bp):
GTTAATTGATCTTCGGAGCTACC
Found at i:38109780 original size:23 final size:24
Alignment explanation
Indices: 38109723--38109790 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
38109713 GGTGCTTCCT
* * *
38109723 GTTAATTGATCTTCGGAGCTACTC
1 GTTAATGGCTCTTTGGAGCTACTC
*
38109747 GTTAATTGCTCTTTGGAGCTAC-C
1 GTTAATGGCTCTTTGGAGCTACTC
38109770 GTT-ATAGGCTCTTTGTGAGCT
1 GTTAAT-GGCTCTTTG-GAGCT
38109791 TTCTGTTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
22 2 0.05
23 12 0.31
24 25 0.64
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.40
Consensus pattern (24 bp):
GTTAATGGCTCTTTGGAGCTACTC
Found at i:38112180 original size:15 final size:16
Alignment explanation
Indices: 38112151--38112187 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
38112141 TTACTTTGGG
38112151 TTTAATATAGTTAGGC
1 TTTAATATAGTTAGGC
38112167 TTTAATAT-GTTAGGC
1 TTTAATATAGTTAGGC
*
38112182 CTTAAT
1 TTTAAT
38112188 GGTAACTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (16 bp):
TTTAATATAGTTAGGC
Found at i:38115358 original size:24 final size:24
Alignment explanation
Indices: 38115331--38115407 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
38115321 GTATCTGGAA
*
38115331 ATAGGGGTTCATATGTGTCTAGTG
1 ATAGGGGTTCATAGGTGTCTAGTG
*
38115355 ATAGGGGTCCATAGGTGTCTAGT-
1 ATAGGGGTTCATAGGTGTCTAGTG
** *
38115378 ATAGGGGTTCGCAGGTGTCTGGTG
1 ATAGGGGTTCATAGGTGTCTAGTG
38115402 ATAGGG
1 ATAGGG
38115408 ATTGTAACAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 19 0.41
24 27 0.59
ACGTcount: A:0.19, C:0.10, G:0.39, T:0.31
Consensus pattern (24 bp):
ATAGGGGTTCATAGGTGTCTAGTG
Found at i:38116870 original size:46 final size:46
Alignment explanation
Indices: 38116818--38116927 Score: 168
Period size: 46 Copynumber: 2.4 Consensus size: 46
38116808 CGATATGAAG
* *
38116818 CCTGCTAGGTACAAGGCCTGATACATTATAGTACACCGGCATAAAA
1 CCTGCTAGGTACAAGGCCTGATACATTAAAATACACCGGCATAAAA
* *
38116864 CCTGCTAGGCACAAGGCTTGATACATTAAAATACACCGGCATAAAA
1 CCTGCTAGGTACAAGGCCTGATACATTAAAATACACCGGCATAAAA
38116910 CCTGCTAGGCT-CAAGGCC
1 CCTGCTAGG-TACAAGGCC
38116928 CGATTCAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (46 bp):
CCTGCTAGGTACAAGGCCTGATACATTAAAATACACCGGCATAAAA
Found at i:38119009 original size:24 final size:24
Alignment explanation
Indices: 38118927--38119074 Score: 131
Period size: 24 Copynumber: 6.2 Consensus size: 24
38118917 TAGGGATTCA
38118927 CAGGTGTCTGGTGATATGG-GTTCG
1 CAGGTGTCTGGTGATA-GGTGTTCG
* * * *
38118951 CATGTGTCTAGTGGTA-GTGTTTTG
1 CAGGTGTCTGGTGATAGGTG-TTCG
*
38118975 CATGTGTCTGGTGATAGGTGTTCG
1 CAGGTGTCTGGTGATAGGTGTTCG
*
38118999 CAGGTATCTGGTGATAGG-GTTCG
1 CAGGTGTCTGGTGATAGGTGTTCG
* * *
38119022 CATGTGTCTAGTAATAGGTGTTCG
1 CAGGTGTCTGGTGATAGGTGTTCG
* * * * *
38119046 TAGGTATTTGGTGATAGGGGTTTG
1 CAGGTGTCTGGTGATAGGTGTTCG
38119070 CAGGT
1 CAGGT
38119075 TACATGCTAG
Statistics
Matches: 98, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
22 1 0.01
23 20 0.20
24 74 0.76
25 3 0.03
ACGTcount: A:0.16, C:0.10, G:0.37, T:0.37
Consensus pattern (24 bp):
CAGGTGTCTGGTGATAGGTGTTCG
Found at i:38119039 original size:47 final size:47
Alignment explanation
Indices: 38118974--38119064 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 47
38118964 GTAGTGTTTT
* *
38118974 GCATGTGTCTGGTGATAGGTGTTCGCAGGTATCTGGTGATAGGGTTC
1 GCATGTGTCTAGTAATAGGTGTTCGCAGGTATCTGGTGATAGGGTTC
* *
38119021 GCATGTGTCTAGTAATAGGTGTTCGTAGGTATTTGGTGATAGGG
1 GCATGTGTCTAGTAATAGGTGTTCGCAGGTATCTGGTGATAGGG
38119065 GTTTGCAGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.18, C:0.10, G:0.37, T:0.35
Consensus pattern (47 bp):
GCATGTGTCTAGTAATAGGTGTTCGCAGGTATCTGGTGATAGGGTTC
Found at i:38119059 original size:71 final size:72
Alignment explanation
Indices: 38118916--38119074 Score: 187
Period size: 71 Copynumber: 2.2 Consensus size: 72
38118906 ACGGGCTATT
* * * ** * * *
38118916 ATAGGGATTCACAGGTGTCTGGTGATATGGGTTCGCATGTGTCTAGTGGTAGTGTTTTGCATGTG
1 ATAGGGGTTCGCAGGTATCTGGTGATATGGGTTCGCATGTGTCTAGTAATAGTGTTTCGCAGGTA
38118981 TCTGGTG
66 TCTGGTG
* *
38118988 ATAGGTGTTCGCAGGTATCTGGTGATA-GGGTTCGCATGTGTCTAGTAATAG-GTGTTCGTAGGT
1 ATAGGGGTTCGCAGGTATCTGGTGATATGGGTTCGCATGTGTCTAGTAATAGTGT-TTCGCAGGT
*
38119051 ATTTGGTG
65 ATCTGGTG
*
38119059 ATAGGGGTTTGCAGGT
1 ATAGGGGTTCGCAGGT
38119075 TACATGCTAG
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
70 2 0.03
71 48 0.66
72 23 0.32
ACGTcount: A:0.17, C:0.10, G:0.36, T:0.36
Consensus pattern (72 bp):
ATAGGGGTTCGCAGGTATCTGGTGATATGGGTTCGCATGTGTCTAGTAATAGTGTTTCGCAGGTA
TCTGGTG
Found at i:38120519 original size:29 final size:29
Alignment explanation
Indices: 38120484--38120548 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
38120474 TTTGGCCACT
*
38120484 CAATTATGAAAAGTTACAAAATGGTCACC
1 CAATTATGAAAAGTTACAAAATGATCACC
*
38120513 CAATTATGAAAAGTTACAGAATGATCACC
1 CAATTATGAAAAGTTACAAAATGATCACC
*
38120542 TAATTAT
1 CAATTAT
38120549 TCAATTTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (29 bp):
CAATTATGAAAAGTTACAAAATGATCACC
Found at i:38123318 original size:31 final size:32
Alignment explanation
Indices: 38123242--38123318 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 32
38123232 ATAACTTTTC
* * *
38123242 ATAGTTA-GATGACCAAAAAATAAATTTACTA
1 ATAGTTAGGATGACTAAAAAAGAAATTGACTA
38123273 ATAGTT-GGATGACTAAAAAAGAAATTGACTA
1 ATAGTTAGGATGACTAAAAAAGAAATTGACTA
38123304 ATAGTTAGGA-GACTA
1 ATAGTTAGGATGACTA
38123319 CTAGTGTGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
31 38 0.93
32 3 0.07
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (32 bp):
ATAGTTAGGATGACTAAAAAAGAAATTGACTA
Found at i:38123354 original size:13 final size:14
Alignment explanation
Indices: 38123336--38123367 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
38123326 GATGTACCCT
38123336 ATATTTTAT-ATTA
1 ATATTTTATAATTA
38123349 ATATTTTATAATTA
1 ATATTTTATAATTA
38123363 A-ATTT
1 ATATTT
38123368 AAATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATTTTATAATTA
Found at i:38124227 original size:153 final size:145
Alignment explanation
Indices: 38124070--38124348 Score: 333
Period size: 145 Copynumber: 1.9 Consensus size: 145
38124060 GCCAAATTAA
* * ** ** *
38124070 ATAAAATTAAAATGTAAATATTAAATATTAAATATAATCATAGTAGGGGGACTAAAATTGAAATT
1 ATAAAATTAAAATATAAAGATTAAATACCAAATATAATCATAG-A--AAGACTAAAATTAAAATT
* *
38124135 TGGCGAAAGACTACACATTTAAGGCATTAGGGACAAAAAAGAAAGAAGAAAAAGAGACACTACAC
63 T---G-AACA-TAAACATTTAAGGCATTAGGGACAAAAAAGAAAGAAGAAAAAGAGACACTACAC
38124200 GTGTTAGATGATAAAACCTTAGG
123 GTGTTAGATGATAAAACCTTAGG
* *
38124223 ATAAAATTAAAATATAGAGATTAAATACCAAATATAATCATAGAAAGATTAAAATTAAAATTTGA
1 ATAAAATTAAAATATAAAGATTAAATACCAAATATAATCATAGAAAGACTAAAATTAAAATTTGA
* * * * * *
38124288 CCATAAACGTTTAAGGTATTAGGGACAAAAAAGAAAGAAGAACAAGAGACGCTACATGTGT
66 ACATAAACATTTAAGGCATTAGGGACAAAAAAGAAAGAAGAAAAAGAGACACTACACGTGT
38124349 CACATAGTAA
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
145 52 0.48
146 2 0.02
147 1 0.01
150 15 0.14
152 1 0.01
153 38 0.35
ACGTcount: A:0.51, C:0.09, G:0.17, T:0.24
Consensus pattern (145 bp):
ATAAAATTAAAATATAAAGATTAAATACCAAATATAATCATAGAAAGACTAAAATTAAAATTTGA
ACATAAACATTTAAGGCATTAGGGACAAAAAAGAAAGAAGAAAAAGAGACACTACACGTGTTAGA
TGATAAAACCTTAGG
Found at i:38126554 original size:50 final size:50
Alignment explanation
Indices: 38126400--38126554 Score: 113
Period size: 50 Copynumber: 3.1 Consensus size: 50
38126390 TTCATTATTC
38126400 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAAT
1 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAAT
* **** ** * * * *
38126450 TC-T-GTATTTTAG-CAGGGGCGAAGCCAAAAAT-TCTTTTTGA-AGTTGACAGAAT
1 TCTTGGTATATTAGCCAGATTAG-A-CC---AATGTC-TTAAGAGA-ATCAAATAAT
38126502 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAAT
1 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAAT
38126552 TCT
1 TCT
38126555 GTATTTTAGC
Statistics
Matches: 71, Mismatches: 22, Indels: 24
0.61 0.19 0.21
Matches are distributed among these distances:
47 4 0.06
48 9 0.13
49 3 0.04
50 18 0.25
51 6 0.08
52 15 0.21
53 3 0.04
54 9 0.13
55 4 0.06
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (50 bp):
TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAAT
Found at i:38126576 original size:102 final size:102
Alignment explanation
Indices: 38126400--38126628 Score: 458
Period size: 102 Copynumber: 2.2 Consensus size: 102
38126390 TTCATTATTC
38126400 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAATTCTGTATTTTAGCAG
1 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAATTCTGTATTTTAGCAG
38126465 GGGCGAAGCCAAAAATTCTTTTTGAAGTTGACAGAAT
66 GGGCGAAGCCAAAAATTCTTTTTGAAGTTGACAGAAT
38126502 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAATTCTGTATTTTAGCAG
1 TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAATTCTGTATTTTAGCAG
38126567 GGGCGAAGCCAAAAATTCTTTTTGAAGTTGACAGAAT
66 GGGCGAAGCCAAAAATTCTTTTTGAAGTTGACAGAAT
38126604 TCTTGGTATATTAGCCAGATTAGAC
1 TCTTGGTATATTAGCCAGATTAGAC
38126629 AACCGCCCCC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 127 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (102 bp):
TCTTGGTATATTAGCCAGATTAGACCAATGTCTTAAGAGAATCAAATAATTCTGTATTTTAGCAG
GGGCGAAGCCAAAAATTCTTTTTGAAGTTGACAGAAT
Found at i:38127500 original size:9 final size:9
Alignment explanation
Indices: 38127486--38127516 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
38127476 GTTAAACGAA
38127486 TCGAGTTAT
1 TCGAGTTAT
*
38127495 TCGAGTTAA
1 TCGAGTTAT
38127504 TCGAGTTAT
1 TCGAGTTAT
38127513 TCGA
1 TCGA
38127517 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:38130792 original size:228 final size:228
Alignment explanation
Indices: 38130395--38130853 Score: 855
Period size: 228 Copynumber: 2.0 Consensus size: 228
38130385 ACCGTCCTAC
*
38130395 TCATTTGTACATCTCAATGACAAAAAGCTATGTCACTCTCTTGTCCACATTCTAACTTGACTCAA
1 TCATTTGTACATCTCAACGACAAAAAGCTATGTCACTCTCTTGTCCACATTCTAACTTGACTCAA
*
38130460 ACATAATCCTCTTGATTCACAACACTTGGCTTCGTTTTGCCCACAGTCTCTCGGCCTCTTTACTC
66 ACAGAATCCTCTTGATTCACAACACTTGGCTTCGTTTTGCCCACAGTCTCTCGGCCTCTTTACTC
*
38130525 AAGAACTTCGAAAGGGCCCCTATGTTCTTGCCAAGTCAACAAGTTAGAATGCAACACACTATCAA
131 AAGAACTTCGAAAGGGCCCCTACGTTCTTGCCAAGTCAACAAGTTAGAATGCAACACACTATCAA
* *
38130590 AATGTTCATAATATACATTTGCGTTTACTCTGG
196 AATGTTCATAATATACATTTGCATTTAATCTGG
* *
38130623 TCATTTGTACATCTCAACGACAAGAAGCTATGTCACTCTCTTGTCCACATTCTAACTTGACTCGA
1 TCATTTGTACATCTCAACGACAAAAAGCTATGTCACTCTCTTGTCCACATTCTAACTTGACTCAA
38130688 ACAGAATCCTCTTGATTCACAACACTTGGCTTCGTTTTGCCCACAGTCTCTCGGCCTCTTTACTC
66 ACAGAATCCTCTTGATTCACAACACTTGGCTTCGTTTTGCCCACAGTCTCTCGGCCTCTTTACTC
38130753 AAGAACTTCGAAAGGGCCCCTACGTTCTTGCCAAGTCAACAAGTTAGAATGCAACACACTATCAA
131 AAGAACTTCGAAAGGGCCCCTACGTTCTTGCCAAGTCAACAAGTTAGAATGCAACACACTATCAA
38130818 AATGTTCATAATATACATTTGCATTTAATCTGG
196 AATGTTCATAATATACATTTGCATTTAATCTGG
38130851 TCA
1 TCA
38130854 ACTGTCCCAC
Statistics
Matches: 224, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
228 224 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (228 bp):
TCATTTGTACATCTCAACGACAAAAAGCTATGTCACTCTCTTGTCCACATTCTAACTTGACTCAA
ACAGAATCCTCTTGATTCACAACACTTGGCTTCGTTTTGCCCACAGTCTCTCGGCCTCTTTACTC
AAGAACTTCGAAAGGGCCCCTACGTTCTTGCCAAGTCAACAAGTTAGAATGCAACACACTATCAA
AATGTTCATAATATACATTTGCATTTAATCTGG
Found at i:38136996 original size:76 final size:77
Alignment explanation
Indices: 38136869--38137022 Score: 274
Period size: 76 Copynumber: 2.0 Consensus size: 77
38136859 ACCTTGCATA
*
38136869 ACTTAGTCTCCACAAAAAAAGACTACCTGGGGATTATACATCTTCAGCACATGCCGAAGTCTTCT
1 ACTTAGTCTCCACAAAAAAAGACTACCTGGGGATTATACATCTTCAGCACATGCCGAAGTCCTCT
*
38136934 AACTGCCCGTGG
66 AACTACCCGTGG
*
38136946 ACTTAGTCTCCAC-AAAAAAGACTACCTGGGGATTATACATCTTTAGCACATGCCGAAGTCCTCT
1 ACTTAGTCTCCACAAAAAAAGACTACCTGGGGATTATACATCTTCAGCACATGCCGAAGTCCTCT
38137010 AACTACCCGTGG
66 AACTACCCGTGG
38137022 A
1 A
38137023 TTACCCAAAC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
76 61 0.82
77 13 0.18
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (77 bp):
ACTTAGTCTCCACAAAAAAAGACTACCTGGGGATTATACATCTTCAGCACATGCCGAAGTCCTCT
AACTACCCGTGG
Found at i:38139249 original size:20 final size:20
Alignment explanation
Indices: 38139224--38139270 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
38139214 AGGAGCCTTT
38139224 AAATCAATTTGAATAAAATC
1 AAATCAATTTGAATAAAATC
*
38139244 AAATCAATTTGATTAAAATC
1 AAATCAATTTGAATAAAATC
38139264 AAATCAA
1 AAATCAA
38139271 AACGAGATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.30
Consensus pattern (20 bp):
AAATCAATTTGAATAAAATC
Found at i:38141326 original size:35 final size:35
Alignment explanation
Indices: 38141280--38141404 Score: 117
Period size: 35 Copynumber: 3.4 Consensus size: 35
38141270 TATTTACCAA
38141280 TTTATTTTATTTTCTTAAATTTATTTTTGCATTAT
1 TTTATTTTATTTTCTTAAATTTATTTTTGCATTAT
* ** ** *
38141315 TTTATTTTATTTTAGCTAAGCTTAAA-ATATTTTATTTACCAA
1 TTTATTTTA-TTT---T---CTTAAATTTATTTT-TGCATTAT
38141357 TTTATTTTATTTTCTTAAATTTATTTTTGCATTAT
1 TTTATTTTATTTTCTTAAATTTATTTTTGCATTAT
38141392 TTTATTTTATTTT
1 TTTATTTTATTTT
38141405 ATTACACTTC
Statistics
Matches: 69, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
35 31 0.45
36 9 0.13
38 1 0.01
39 1 0.01
41 9 0.13
42 18 0.26
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (35 bp):
TTTATTTTATTTTCTTAAATTTATTTTTGCATTAT
Found at i:38141350 original size:77 final size:78
Alignment explanation
Indices: 38141251--38141405 Score: 303
Period size: 77 Copynumber: 2.0 Consensus size: 78
38141241 CAAGGCTAAG
38141251 GCTAAGCTTAAAAATATTTTATTTACCAATTTATTTTATTTTCTTAAATTTATTTTTGCATTATT
1 GCTAAGCTTAAAAATATTTTATTTACCAATTTATTTTATTTTCTTAAATTTATTTTTGCATTATT
38141316 TTATTTTATTTTA
66 TTATTTTATTTTA
38141329 GCTAAGCTT-AAAATATTTTATTTACCAATTTATTTTATTTTCTTAAATTTATTTTTGCATTATT
1 GCTAAGCTTAAAAATATTTTATTTACCAATTTATTTTATTTTCTTAAATTTATTTTTGCATTATT
38141393 TTATTTTATTTTA
66 TTATTTTATTTTA
38141406 TTACACTTCA
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 68 0.88
78 9 0.12
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (78 bp):
GCTAAGCTTAAAAATATTTTATTTACCAATTTATTTTATTTTCTTAAATTTATTTTTGCATTATT
TTATTTTATTTTA
Found at i:38145787 original size:13 final size:13
Alignment explanation
Indices: 38145771--38145835 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
38145761 TAAATTTCAA
38145771 ATTTAGTGATAAT
1 ATTTAGTGATAAT
*
38145784 ATTTA--GA-ATT
1 ATTTAGTGATAAT
38145794 ATTTAGTGATAAT
1 ATTTAGTGATAAT
*
38145807 ATTTA--GA-ATT
1 ATTTAGTGATAAT
38145817 ATTTAGTGATAAT
1 ATTTAGTGATAAT
*
38145830 GTTTAG
1 ATTTAG
38145836 GAAAAATCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
10 14 0.34
11 4 0.10
12 4 0.10
13 19 0.46
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
ATTTAGTGATAAT
Found at i:38145801 original size:23 final size:23
Alignment explanation
Indices: 38145771--38145835 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
38145761 TAAATTTCAA
38145771 ATTTAGTGATAATATTTAGAATT
1 ATTTAGTGATAATATTTAGAATT
38145794 ATTTAGTGATAATATTTAGAATT
1 ATTTAGTGATAATATTTAGAATT
*
38145817 ATTTAGTGATAATGTTTAG
1 ATTTAGTGATAATATTTAG
38145836 GAAAAATCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (23 bp):
ATTTAGTGATAATATTTAGAATT
Found at i:38147313 original size:23 final size:23
Alignment explanation
Indices: 38147293--38147337 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
38147283 TTAAATTTTG
38147293 AATTATTTAGTGATAACATTTAA
1 AATTATTTAGTGATAACATTTAA
*
38147316 AATTATTTAGTGATAATATTTA
1 AATTATTTAGTGATAACATTTA
38147338 GGAAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (23 bp):
AATTATTTAGTGATAACATTTAA
Found at i:38148191 original size:18 final size:17
Alignment explanation
Indices: 38148160--38148210 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
38148150 TTTATTTACC
38148160 AATTTATTTTATTTTCTT
1 AATTTATTTTATTTT-TT
38148178 AATTT-TTTTCATTTTTT
1 AATTTATTTT-ATTTTTT
* *
38148195 CATTTGTTTTTATTTT
1 AATTT-ATTTTATTTT
38148211 ATTTTATTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 10 0.34
18 15 0.52
19 4 0.14
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.75
Consensus pattern (17 bp):
AATTTATTTTATTTTTT
Found at i:38153102 original size:29 final size:30
Alignment explanation
Indices: 38153042--38153112 Score: 90
Period size: 29 Copynumber: 2.3 Consensus size: 30
38153032 TTGGGGCAAA
* *
38153042 ATAAATTATGGTTTAATGTGTAATTGTATAT
1 ATAAATTTTGGTTT-ATATGTAATTGTATAT
*
38153073 ATAAATTTTGGTTT-TATGTAATTTTATAT
1 ATAAATTTTGGTTTATATGTAATTGTATAT
38153102 ATAAAATTTTG
1 AT-AAATTTTG
38153113 ATTTGATCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 15 0.42
30 8 0.22
31 13 0.36
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (30 bp):
ATAAATTTTGGTTTATATGTAATTGTATAT
Found at i:38153316 original size:29 final size:30
Alignment explanation
Indices: 38153279--38153348 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
38153269 CGATTAGAGT
* * * *
38153279 TTCACGTATATAATTGC-ACTAAATTAAAG
1 TTCATGTATACAATTACAACTAAATCAAAG
*
38153308 TTCATGTATACAATTACATATTAAATCAAAG
1 TTCATGTATACAATTACA-ACTAAATCAAAG
38153339 TTCATGTATA
1 TTCATGTATA
38153349 ATTTTGAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 14 0.41
31 20 0.59
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (30 bp):
TTCATGTATACAATTACAACTAAATCAAAG
Found at i:38157133 original size:32 final size:32
Alignment explanation
Indices: 38157097--38157179 Score: 114
Period size: 32 Copynumber: 2.6 Consensus size: 32
38157087 TGAACCTCAA
*
38157097 TAAGCCTCACAACTAGGTTTCTT-AATCATCAG
1 TAAGCCTCACAACTAGGTTT-TTAAATCATAAG
*
38157129 TAAGCCTTACAACTAGGTTTTTAAATCATAAG
1 TAAGCCTCACAACTAGGTTTTTAAATCATAAG
* *
38157161 TAAACCTCAAAACTAGGTT
1 TAAGCCTCACAACTAGGTT
38157180 CCATAATTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
31 2 0.04
32 43 0.96
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.31
Consensus pattern (32 bp):
TAAGCCTCACAACTAGGTTTTTAAATCATAAG
Found at i:38161032 original size:11 final size:11
Alignment explanation
Indices: 38161016--38161041 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
38161006 GGTAAACAAC
38161016 CTTAAAATCAA
1 CTTAAAATCAA
38161027 CTTAAAATCAA
1 CTTAAAATCAA
38161038 CTTA
1 CTTA
38161042 CCTTGGACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (11 bp):
CTTAAAATCAA
Found at i:38171801 original size:100 final size:99
Alignment explanation
Indices: 38171624--38171815 Score: 269
Period size: 100 Copynumber: 1.9 Consensus size: 99
38171614 TACCTACATA
* * * ** *
38171624 TAAAGTAACATCCCTAACCTGTCTTCGTCACTGGATTAGGGTTACGATGCATTACCGTACAATCG
1 TAAAGTAACACCCCTAACCCGTCTCCGTCACCAGATTAGGGTTACGATGCATTACCATACAATCG
*
38171689 AAAACATTTAAACATTTTAACACTGAAGAATTTC
66 AAAACATTTAAACATTTGAACACTGAAGAATTTC
*
38171723 TAAATGTAACACCCCTAACCCGTCTCCGTCGCCAGATTAGGGTTACGGA-GCATTACCATACAAT
1 TAAA-GTAACACCCCTAACCCGTCTCCGTCACCAGATTAGGGTTAC-GATGCATTACCATACAAT
* *
38171787 CGGAAACATTTAAACATTTGAACATTGAA
64 CGAAAACATTTAAACATTTGAACACTGAA
38171816 TATTTTAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
99 4 0.05
100 75 0.93
101 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (99 bp):
TAAAGTAACACCCCTAACCCGTCTCCGTCACCAGATTAGGGTTACGATGCATTACCATACAATCG
AAAACATTTAAACATTTGAACACTGAAGAATTTC
Found at i:38172748 original size:49 final size:49
Alignment explanation
Indices: 38172676--38172769 Score: 179
Period size: 49 Copynumber: 1.9 Consensus size: 49
38172666 TGCTATGCAA
*
38172676 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTATACTT
1 TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACTT
38172725 TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
38172770 TCCTTCTTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.23, C:0.27, G:0.07, T:0.43
Consensus pattern (49 bp):
TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACTT
Found at i:38174037 original size:43 final size:43
Alignment explanation
Indices: 38173989--38174074 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
38173979 TCATATTTCA
* *
38173989 TTTCTCATCTCATAATCATTTTTCATAATTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTATCATAATTTCCATTCCAATAT
* ** **
38174032 TTTCTCATCTCGTTTTCATTTATCATCTTTTCCATTCCAATAT
1 TTTCTCATCTCATAATCATTTATCATAATTTCCATTCCAATAT
38174075 CAATCATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.23, G:0.01, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTATCATAATTTCCATTCCAATAT
Found at i:38175254 original size:16 final size:18
Alignment explanation
Indices: 38175233--38175265 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
38175223 CATCTCTTTT
38175233 TCTTTC-TTTT-ATTATA
1 TCTTTCATTTTAATTATA
38175249 TCTTTCATTTTAATTAT
1 TCTTTCATTTTAATTAT
38175266 TATAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTTCATTTTAATTATA
Found at i:38175490 original size:16 final size:18
Alignment explanation
Indices: 38175459--38175492 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
38175449 TTTATAACTC
38175459 CTAATTTCACAAAATTTA
1 CTAATTTCACAAAATTTA
38175477 CTAA-TTCA-AAAATTTA
1 CTAATTTCACAAAATTTA
38175493 ATTAGCTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (18 bp):
CTAATTTCACAAAATTTA
Found at i:38180464 original size:49 final size:49
Alignment explanation
Indices: 38180389--38180482 Score: 143
Period size: 49 Copynumber: 1.9 Consensus size: 49
38180379 TGCTATGCAA
* *
38180389 TGCTAAAATTGGTCTTCCACTATCTACACTTTTATCACTATTTATACAT
1 TGCTAAAATTAGTCTTCCACTATCTACACTCTTATCACTATTTATACAT
* * *
38180438 TGCTAAACTTAGTCTTCCATTGTCTACACTCTTATCACTATTTAT
1 TGCTAAAATTAGTCTTCCACTATCTACACTCTTATCACTATTTAT
38180483 CCCTTCTTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (49 bp):
TGCTAAAATTAGTCTTCCACTATCTACACTCTTATCACTATTTATACAT
Found at i:38181749 original size:25 final size:25
Alignment explanation
Indices: 38181721--38181768 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
38181711 CTCATAATCA
*
38181721 TTTCTCATATTTGTAATTTCAATAT
1 TTTCTCATATTTGCAATTTCAATAT
* *
38181746 TTTCTCATCTTTGCCATTTCAAT
1 TTTCTCATATTTGCAATTTCAAT
38181769 GTTAATGACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.19, G:0.04, T:0.54
Consensus pattern (25 bp):
TTTCTCATATTTGCAATTTCAATAT
Found at i:38182904 original size:16 final size:18
Alignment explanation
Indices: 38182883--38182915 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
38182873 CATCTCTTTT
38182883 TCTTTC-TTTT-ATTATA
1 TCTTTCATTTTAATTATA
38182899 TCTTTCATTTTAATTAT
1 TCTTTCATTTTAATTAT
38182916 TATAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTTCATTTTAATTATA
Found at i:38186134 original size:39 final size:39
Alignment explanation
Indices: 38186111--38186265 Score: 175
Period size: 39 Copynumber: 4.0 Consensus size: 39
38186101 AGGAGTACTG
** ** *
38186111 AAGTACAACAAGGGCACGTAAGTGTGTTTAGGGGTACTA
1 AAGTACAACAAGGGCACGTAAGTGCATCCAGGGGTACCA
* * * *
38186150 AAGTACAATAGGGGCACATAAGTGCATCCAGGGGTACCG
1 AAGTACAACAAGGGCACGTAAGTGCATCCAGGGGTACCA
* * *
38186189 AAGTAGAACAATGGCAAGTAAGTGCATCCAGGGGTACCA
1 AAGTACAACAAGGGCACGTAAGTGCATCCAGGGGTACCA
* * *
38186228 AAGTACAACAGGGGCACATAAGTGCATTCAGGGGTACC
1 AAGTACAACAAGGGCACGTAAGTGCATCCAGGGGTACC
38186266 GAACTACATC
Statistics
Matches: 94, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.17
Consensus pattern (39 bp):
AAGTACAACAAGGGCACGTAAGTGCATCCAGGGGTACCA
Found at i:38186222 original size:78 final size:77
Alignment explanation
Indices: 38186091--38186273 Score: 231
Period size: 78 Copynumber: 2.3 Consensus size: 77
38186081 CAAGACACGA
* * * ** ** *
38186091 AAGTGCTATCAGGAGTACTGAAGTACAACAAGGGCACGTAAGTGTGTTTAGGGGTACTAAAGTAC
1 AAGTGC-ATCAGGGGTACCGAAGTACAACAAGGGCAAGTAAGTGCATCCAGGGGTACCAAAGTAC
*
38186156 AATAGGGGCACAT
65 AACAGGGGCACAT
* *
38186169 AAGTGCATCCAGGGGTACCGAAGTAGAACAATGGCAAGTAAGTGCATCCAGGGGTACCAAAGTAC
1 AAGTGCAT-CAGGGGTACCGAAGTACAACAAGGGCAAGTAAGTGCATCCAGGGGTACCAAAGTAC
38186234 AACAGGGGCACAT
65 AACAGGGGCACAT
*
38186247 AAGTGCATTCAGGGGTACCGAACTACA
1 AAGTGCA-TCAGGGGTACCGAAGTACA
38186274 TCAATTTTCT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
77 2 0.02
78 87 0.97
79 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (77 bp):
AAGTGCATCAGGGGTACCGAAGTACAACAAGGGCAAGTAAGTGCATCCAGGGGTACCAAAGTACA
ACAGGGGCACAT
Found at i:38189564 original size:550 final size:550
Alignment explanation
Indices: 38188524--38189624 Score: 2114
Period size: 550 Copynumber: 2.0 Consensus size: 550
38188514 GGCATCTCTC
38188524 TCTGATGATAAACCATCATCTTTTGCACATGAAATATCTGAAGAACATGCTGATGAGCTACAAAA
1 TCTGATGATAAACCATCATCTTTTGCACATGAAATATCTGAAGAACATGCTGATGAGCTACAAAA
*
38188589 AATGATTCAATCTCAGGAGATCGAGTGTGAAAAAATAAAATTGGAACTTATATAACTTTCAAAAG
66 AATGATTCAATCTCAGGAGATCGAGTGTGAAAAAATAAAATTGGAACTTATACAACTTTCAAAAG
*
38188654 AGAAGAGTGAGATATGTTTCCAAAATAAAAAACTGACTGAAGAAGCCTCATATGTAAAAGAATTA
131 AGAAGAGTGAGATATGTTTCCAAAATAAAAAACTGACTGAAGAAGCCTCATATGCAAAAGAATTA
38188719 GCATATTTAGCTCATGTTGAGTTTAAGAATTTAGTTGGTGAGGCGATCAGGCTTTCGGTGAAAAA
196 GCATATTTAGCTCATGTTGAGTTTAAGAATTTAGTTGGTGAGGCGATCAGGCTTTCGGTGAAAAA
38188784 TGAAAAATTGAAGAATGAATTATTGGTTGCAAGAAGATCTGTTAATCAAATTATAAATGGTGTTA
261 TGAAAAATTGAAGAATGAATTATTGGTTGCAAGAAGATCTGTTAATCAAATTATAAATGGTGTTA
38188849 ATCACAAGTATAGTGAAAATACAAGACCTTCGAGGAAAGGGTGACACTCTGGTCACTCTCTAATT
326 ATCACAAGTATAGTGAAAATACAAGACCTTCGAGGAAAGGGTGACACTCTGGTCACTCTCTAATT
38188914 TTTGTGGAGTAGTTGGTGATGATTTTAAATTGTAGAATTTTAATTTAGATGATCTAAATATGAAA
391 TTTGTGGAGTAGTTGGTGATGATTTTAAATTGTAGAATTTTAATTTAGATGATCTAAATATGAAA
38188979 CAGCAGATCAGGAAGCAATTGGAAGCAGCTCTTGATGTTGCACTAGTCTAGAAGGAATTCATAGA
456 CAGCAGATCAGGAAGCAATTGGAAGCAGCTCTTGATGTTGCACTAGTCTAGAAGGAATTCATAGA
38189044 AAACGAATAACAAATATTTTTATTAAAATT
521 AAACGAATAACAAATATTTTTATTAAAATT
38189074 TCTGATGAT-AACCATCATCTTTTGCACATGAAATATCTGAAGAACATGCTGATGAGCTACAAAA
1 TCTGATGATAAACCATCATCTTTTGCACATGAAATATCTGAAGAACATGCTGATGAGCTAC-AAA
* *
38189138 AAATGATTCAATCTCAGGAGATCGAGTGTGAAAAAATAAATTTGGAACTTATGCAACTTTCAAAA
65 AAATGATTCAATCTCAGGAGATCGAGTGTGAAAAAATAAAATTGGAACTTATACAACTTTCAAAA
*
38189203 GAGAAGAGTGAGATATGTTTCCAAAATAAAAAACTGACTGAAGAAGCCTTATATGCAAAAGAATT
130 GAGAAGAGTGAGATATGTTTCCAAAATAAAAAACTGACTGAAGAAGCCTCATATGCAAAAGAATT
38189268 AGCATATTTAGCTCATGTTGAGTTTAAGAATTTAGTTGGTGAGGCGATCAGGCTTTCGGTGAAAA
195 AGCATATTTAGCTCATGTTGAGTTTAAGAATTTAGTTGGTGAGGCGATCAGGCTTTCGGTGAAAA
* *
38189333 ATTAAAAATTGAAGACTGAATTATTGGTTGCAAGAAGATCTGTTAATCAAATTATAAATGGTGTT
260 ATGAAAAATTGAAGAATGAATTATTGGTTGCAAGAAGATCTGTTAATCAAATTATAAATGGTGTT
38189398 AATCACAAGTATAGTGAAAATACAAGACCTTCGAGGAAAGGGTGACACTCTGGTCACTCTCTAAT
325 AATCACAAGTATAGTGAAAATACAAGACCTTCGAGGAAAGGGTGACACTCTGGTCACTCTCTAAT
*
38189463 TTTTGTGGAGTAGTTGGTGATGATTTTAAATTGTAGAATTTTGATTTAGATGATCTAAATATGAA
390 TTTTGTGGAGTAGTTGGTGATGATTTTAAATTGTAGAATTTTAATTTAGATGATCTAAATATGAA
38189528 ACAGCAGATCAGGAAGCAATTGGAAGCAGCTCTTGATGTTGCACTAGTCTAGAAGGAATTCATAG
455 ACAGCAGATCAGGAAGCAATTGGAAGCAGCTCTTGATGTTGCACTAGTCTAGAAGGAATTCATAG
38189593 AAAACGAATAACAAATATTTTTATTAAAATT
520 AAAACGAATAACAAATATTTTTATTAAAATT
38189624 T
1 T
38189625 TTCATGTTAG
Statistics
Matches: 542, Mismatches: 8, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
549 51 0.09
550 491 0.91
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (550 bp):
TCTGATGATAAACCATCATCTTTTGCACATGAAATATCTGAAGAACATGCTGATGAGCTACAAAA
AATGATTCAATCTCAGGAGATCGAGTGTGAAAAAATAAAATTGGAACTTATACAACTTTCAAAAG
AGAAGAGTGAGATATGTTTCCAAAATAAAAAACTGACTGAAGAAGCCTCATATGCAAAAGAATTA
GCATATTTAGCTCATGTTGAGTTTAAGAATTTAGTTGGTGAGGCGATCAGGCTTTCGGTGAAAAA
TGAAAAATTGAAGAATGAATTATTGGTTGCAAGAAGATCTGTTAATCAAATTATAAATGGTGTTA
ATCACAAGTATAGTGAAAATACAAGACCTTCGAGGAAAGGGTGACACTCTGGTCACTCTCTAATT
TTTGTGGAGTAGTTGGTGATGATTTTAAATTGTAGAATTTTAATTTAGATGATCTAAATATGAAA
CAGCAGATCAGGAAGCAATTGGAAGCAGCTCTTGATGTTGCACTAGTCTAGAAGGAATTCATAGA
AAACGAATAACAAATATTTTTATTAAAATT
Found at i:38196756 original size:693 final size:689
Alignment explanation
Indices: 38193638--38197923 Score: 3725
Period size: 705 Copynumber: 6.2 Consensus size: 689
38193628 AAACCAACAA
* * *
38193638 TTTTATTAATGTAAACATCATATTAAA-TAAATTTTAAA--TATTTTGTTGAATTTATATATTTA
1 TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTA
* * * * * * * *
38193700 TATATATTACAAACTTATAGAATTACAACCCTTGTTTAGTTACTCAAGAAGTTATCGAAAAATCA
66 TATATATAACAAACTTATAGAATT-CCACACTTGTTTAGTTACTC-GGAGGTTACCGAACAACCA
* * * * * * *
38193765 AATG-CCTTCAAATCGAAACCATAAATCAAAACTAAAATTGAATCACCTGATCAAAATCGAATCT
129 AAAGAGCTTCGAATCGAAACCACAAACCAAAATTGAAATTGAATC-CC----C---A---AAT-T
* * * * * ***
38193829 AAAACCCCAAACAAAAACCCTAAATTGAAACCTA-AGTCAAAATATTAAATTTAAGGCTTTCAAT
182 GAAA-TCGAATCTAAAACCCTAAA-TGAAACCTATA-TCAAAATCCCAAATTTAAGGCTTTCAAT
* * ** * * * *
38193893 AGATTTGGGTAAATAAATTTAAAACTTTCTAAAACCTTCTATTGTTGCTCATTCTAGTCGAACAT
244 AGATTTGGATAACTAAATTTAAGGCTTTCAAAAACCTTTTATTGTTGTTCATTCTAGTCGAACGT
* ** * * * * * ***
38193958 GAGATTATTTCTATTGTACAAAATGAGATCTTTTCATTGGCATGTTTTCCAAGTCAAAATGAACT
309 GAGATGATTTCTATTGTATGAAATGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAAATGTGTT
* * * *
38194023 CTGTGTTAAAAGAACCATGCTCCGAAAGTAGCCTACTTGAAATAGAAAACTTTCAAATTCTAGGC
374 CTGTCTTAAAAGAACCAAGCTCC-AAAGTAGCCTACTTGAAACAGAAAACTTTGAAATTCTAGGC
* * * * * *
38194088 AAGTTGTGATGATTTTTAAAGTTTTAAGCACCGAATATTAGGCTTTTAGTTACTCTATTTGAT-A
438 AAGTTGTGACGATTTTCAATGTTTTAAGCCCCGAATATTAGGCTTTTGGTTACTCTTTTTGATCA
* * *
38194152 AA-AAAATTTTTT-TTTTAGAATTACATTTCAACTCTAAATTAATACTATTAAAACAATCAAATT
503 AACAAAATTTTTTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACCACCAAATT
* **
38194215 TTTGAAAGAGCATAAAGTTTTGATAACTTAAAATGAACCAAAAAGTC-TATGAGATTCTGAAATA
568 TTTGAAAGAGCATAGAGTTTTGATAACTTAAAATGAGTCAAAAAGTCAT-TGAGATTCTGAAATA
* ** * * *
38194279 TA-GA-ATACAATTTTTTTATATTATTTCATTTTAATATTATTGTT-TTCCAAATTATG
632 TATGATATAAAAACTTTATATTTTATTTCATTTTAATATTATTGTTGGT-CAAATTATG
** * *
38194335 TTTTATTAATATAAACATCATACTAAATTAATTTTT-AATTTTTTTTGTTAAATTTATATATTTA
1 TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATA--T-
*
38194399 TATATATATATATTACAAACTTATAGAATTTCAACACTTGTTTAGTTACTCCGGAGGTTACCGAA
63 T-TATATATATA--ACAAACTTATAGAA-TTCCACACTTGTTTAGTTACT-CGGAGGTTACCGAA
* ** *
38194464 CAACCAAAA-AGACTTTGAATCGAAACCACATGCCAAACTTGAAATTGAATCCCCAAATTGAAAT
123 CAACCAAAAGAG-CTTCGAATCGAAACCACAAACCAAAATTGAAATTGAATCCCCAAATTGAAAT
* * ** * * *
38194528 CGAATATAAAACCCCAAACCAAACCCTAATTTGAAATATAAGTTGAAATCTCAAATTGAAGGCTT
187 CGAATCTAAAACCCTAAATGAAA-CC-----T---ATATCA----AAATCCCAAATTTAAGGCTT
* * * * * *
38194593 TCAACAGGTTTGGGTAACTAAATTTAAGGCGTTT-TAAAACCTTTTATTGTTGGTCATTCTATTC
239 TCAATAGATTTGGATAACTAAATTTAAGGC-TTTCAAAAACCTTTTATTGTTGTTCATTCTAGTC
* * * * *
38194657 GAACGTGAGATGATATCTGTTGTATGAAATGCGATCTTTCCATTGGTATGTTTTGCAAGCCAAAA
303 GAACGTGAGATGATTTCTATTGTATGAAATGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAAA
** * * * * *
38194722 TAAGTTCTGTGTTAAAAGAACCTAGCACCGAAATTAGCGTACTTGAAACAGAAAACTTTGAAATT
368 TGTGTTCTGTCTTAAAAGAACCAAGCTCC-AAAGTAGCCTACTTGAAACAGAAAACTTTGAAATT
* * * * * * * *
38194787 CTAGGCAAGTTGTGACGATTTTAAATTTTTTTACCCCCAAATTTTTGGCATTTGGTTACTCTTTT
432 CTAGGCAAGTTGTGACGATTTTCAATGTTTTAAGCCCCGAATATTAGGCTTTTGGTTACTCTTTT
* * * *
38194852 TGATTAAACAAAAATTTTCTTATTTTAAAATTACATTTCAACTATAAATTAATATTATTAAAACC
497 TGATCAAAC-AAAATTTT-TTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACC
* *
38194917 ACCAAATTTTTGAAAGAG--TAGAGTTTTGGTAACTTAAAATGAG-CTAAAAAGTCAATGAGATT
560 ACCAAATTTTTGAAAGAGCATAGAGTTTTGATAACTTAAAATGAGTC-AAAAAGTCATTGAGATT
** *
38194979 C-GAAA-ATATAGAATATAAATTTCTTT-TATTTTATTTCATTTTAATATTATTGTTGGCCAAAT
624 CTGAAATATAT-G-ATATAAA-AACTTTATATTTTATTTCATTTTAATATTATTGTTGGTCAAAT
38195041 TATG
686 TATG
* * * * *
38195045 TTTTATTCATGTAAATATAATATTAAATTAATTTTTAAA-TTTTTTTGTTGAATTTATATATTAA
1 TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTA
* * * * * * *
38195109 AATATATTACAAACTTATAGAATTACAACAATTGTTTAGTT--GC-GAGGTTACCGAGCAACTAA
66 TATATATAACAAACTTATAGAATT-CCACACTTGTTTAGTTACTCGGAGGTTACCGAACAACCAA
* * * * * * * * * *
38195171 AAGACCTTCGAAT-AAAAGGCA-AGACCAAAACAT-AAATCT-ACTCTCCATATCGAAATTGAAT
130 AAGAGCTTCGAATCGAAA-CCACAAACCAAAA-TTGAAAT-TGAATCCCCAAATTGAAATCGAAT
* * * * *
38195232 CTAAAACCC------AAACC---A--AAAATCCTAAATTGAA-AC-TT--A-AG---T-CAAAAT
192 CTAAAACCCTAAATGAAACCTATATCAAAATCCCAAATTTAAGGCTTTCAATAGATTTGGATAA-
* * * * * *
38195277 CTCAAATTTAAAGCTTTCTAAATCCTTCTATTGTTGTTCATTCTAGTCGAACGTGAGGTTATTTC
256 CT-AAATTTAAGGCTTTCAAAAACCTTTTATTGTTGTTCATTCTAGTCGAACGTGAGATGATTTC
* * * * * * *
38195342 TATTGTA-GAAAATGTCATCTTTTCATTTGTCTGTTTTCCATGCCAAAATGTGTTCTATGTTAAA
320 TATTGTATG-AAATGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAAATGTGTTCTGTCTTAAA
** *
38195406 AGAACCAAGCTCCCAAAGTATTCTACTTGAAACA-AGAAACTTTAAAATTCTAGGCAAGTTGTGA
384 AGAACCAAGCT-CCAAAGTAGCCTACTTGAAACAGA-AAACTTTGAAATTCTAGGCAAGTTGTGA
* ** ** *
38195470 CGATTTTCAAAGTTTTAAGCCTTGAACCTTAGGCTTTTGGTTACT-TTGTTTGAT-AAA-AAAAA
447 CGATTTTCAATGTTTTAAGCCCCGAATATTAGGCTTTTGGTTACTCTT-TTTGATCAAACAAAAT
* * * * *
38195532 ATATTGTTTTAGAATTACATTTGAACTCTAAATTAATATTAATAAAACAACCAAATTTTTGAAAG
511 TTTTTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACCACCAAATTTTTGAAAG
* * * * * *
38195597 AGTATAGAGTTTTGATAGCTTAAAATGAGTCAAAAAGTTATGGAGATTCTGAAATATATAATAAA
576 AGCATAGAGTTTTGATAACTTAAAATGAGTCAAAAAGTCATTGAGATTCTGAAATATATGATATA
* ** *
38195662 AAAAATTTCGATTTTATTTTATTTTAATATTATTGTTGGTCAAATTATG
641 AAAACTTTATATTTTATTTCATTTTAATATTATTGTTGGTCAAATTATG
* * *
38195711 TTTTATTAAGATAAACATCATATTAAATTAATTTTTAAAATTTTTTTGTTGAATATATATATTTA
1 TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTA
* *
38195776 TATATATTACAAACTTATAGAATTGCCACACTTGTTTAGTTACTCCGGAGGTTACCGAATAACCA
66 TATATATAACAAACTTATAGAATT-CCACACTTGTTTAGTTACT-CGGAGGTTACCGAACAACCA
* * * * ** *
38195841 AAAGGGCTTCGAATTGCAACCACAAACCAAAATTGAACTTGAATCCCCAAATTGAAGCCAAATCT
129 AAAGAGCTTCGAATCGAAACCACAAACCAAAATTGAAATTGAATCCCCAAATTGAAATCGAATCT
* * *
38195906 AAAACCCAAACCAAAAATCTAAATTGAAACCTATGTCGAAATCCCAAATTTAAGGCTTTCATTAG
194 ---A---AAACC------CTAAA-TGAAACCTATATCAAAATCCCAAATTTAAGGCTTTCAATAG
* * * * * * *
38195971 ATTTGGGTAACTAAATTAAAGGCTTTCAGAAACCTTTTATT-TTTTCTCATTCTAATTGAAAGTG
246 ATTTGGATAACTAAATTTAAGGCTTTCAAAAACCTTTTATTGTTGT-TCATTCTAGTCGAACGTG
* * ** *
38196035 AGAGGATTTGTATTGTATGAAATGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAGTTGTGTTG
310 AGATGATTTCTATTGTATGAAATGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAAATGTGTTC
*
38196100 TGTCTTAAAAGAACCAAGCTCTCAAAGTAGCCTACTTGAAACAGAAAACTTTGAAATT-TTGAGC
375 TGTCTTAAAAGAACCAAGCTC-CAAAGTAGCCTACTTGAAACAGAAAACTTTGAAATTCTAG-GC
* * * * * * * * *
38196164 CAGTTGCGACAATTTTGAATGTTTTAAGCCCTGAGTGTTAGGCTTTCGGTTACTCTTTTTTATCA
438 AAGTTGTGACGATTTTCAATGTTTTAAGCCCCGAATATTAGGCTTTTGGTTACTCTTTTTGATCA
* * * *
38196229 AGCAAAATTTTTTGTTTTAGAATTACATTCCAGCTCTAAATTAATATTATTAAAACCACCAAAAT
503 AACAAAATTTTTTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACCACCAAATT
* * *
38196294 TTTGAAAGATCATAGAGTTTTGATAACTTAAAATGAGTGAAAAAGTCATTGAGGTTCTGAAATAT
568 TTTGAAAGAGCATAGAGTTTTGATAACTTAAAATGAGTCAAAAAGTCATTGAGATTCTGAAATAT
* * * * * ** *
38196359 ATGTTATAAAAACTTTATATTTTATTCCATATTATTATTGTTGTTGGTCAAACAATT
633 ATGATATAAAAACTTTATATTTTATTTCATTTTAATATTATTGTTGGTCAAATTATG
* *
38196416 TTTTATTAAGGTAAACATTATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTG
1 TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTA
* * ** *
38196481 TATATATAACAAACTTATAGAATTGTCACACTTGTTTAGTTCCTCTGGAGGACACCGAATAACCA
66 TATATATAACAAACTTATAGAATT-CCACACTTGTTTAGTTACTC-GGAGGTTACCGAACAACCA
* * * *
38196546 AAAGAGCTTTGGATCGAAACCACAAACCAAAATTGAAATTGAATCCCCAAATTGAAACCAAATCT
129 AAAGAGCTTCGAATCGAAACCACAAACCAAAATTGAAATTGAATCCCCAAATTGAAATCGAATCT
38196611 AAAACCCTAAAGTGAAACCTATATCAAAATCCCAAATTTAAGGCTTTCAATAGATTTGGATAACT
194 AAAACCCTAAA-TGAAACCTATATCAAAATCCCAAATTTAAGGCTTTCAATAGATTTGGATAACT
* * * * * * *
38196676 AAATATAAGGCTTTAAAAAACCTTTTATTATTTTTCATTTTAGTTGAACGTGAGATGATTTATAT
258 AAATTTAAGGCTTTCAAAAACCTTTTATTGTTGTTCATTCTAGTCGAACGTGAGATGATTTCTAT
* * * *
38196741 TGTATTAACTGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAATTATG-TCGTGTCTTAAAAGA
323 TGTATGAAATGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAAATGTGTTC-TGTCTTAAAAGA
* *
38196805 ACCAAGCTCCCAAAGTAGCCTACTTGAAATAGAAAACTTTGAAATT-TTGAGCAAGTTGTGACGA
387 ACCAAGCT-CCAAAGTAGCCTACTTGAAACAGAAAACTTTGAAATTCTAG-GCAAGTTGTGACGA
* * *
38196869 TTTTGAATGTTTTAAGCCCCGAATCTTAGGCTTTTGGTTACTCTTTTTGATCAAACAAAATTTCT
450 TTTTCAATGTTTTAAGCCCCGAATATTAGGCTTTTGGTTACTCTTTTTGATCAAACAAAATTTTT
* * * *
38196934 TATTTTAGAATTAAATTTCAGCTCTAAATTAATATTATTAAAACCACCAAATTTTTGAAAGACCA
515 TGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACCACCAAATTTTTGAAAGAGCA
* * * *
38196999 TAGAGTTTTGATAACTTAAAATGAGGCAAAAAGTAATTGAGGTTTTGAAATATA-GAATATAAAA
580 TAGAGTTTTGATAACTTAAAATGAGTCAAAAAGTCATTGAGATTCTGAAATATATG-ATATAAAA
* *
38197063 A---T-TA---TA---GATTTT-ATA--ATTGTTGGTC-AAGT-T-
644 ACTTTATATTTTATTTCATTTTAATATTATTGTTGGTCAAATTATG
* * *
38197093 TTTTATTAAGGT-GA-A-CATATTAAATTAA-TTTTGAATATTTTTTGTTGAATTTATATATTTA
1 TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTA
* * * * * * *
38197154 TATATATTAA-AAACTTAAAAAATTACCACACTAGCTCAGTTACTCGAGAGGTAACCGAACAATC
66 TATATA-TAACAAACTTATAGAATT-CCACACTTGTTTAGTTACTCG-GAGGTTACCGAACAACC
* ** * * ** * * ** * ** * *
38197218 GAAA-CCCTTCGAATCGAGACCTCAAATAAAAAATCAAATCAAATTCCCAAATCAAAATTGAATT
128 AAAAGAGCTTCGAATCGAAACCACAAACCAAAATTGAAATTGAATCCCCAAATTGAAATCGAATC
* ** * * * *
38197282 TAAAACCCCAAACCAAACCCTAAATTAAAA--CC-----TAA----ATC-A-A-A-----AT-CC
193 TAAAACCCTAAATGAAA-CCTATATCAAAATCCCAAATTTAAGGCTTTCAATAGATTTGGATAAC
* * * * *
38197327 CAAATTGAAGGATTTCAAAAACCTTTTATTGTTGCTCATTCTAGTCGAATGTGAGATGATTTCTA
257 TAAATTTAAGGCTTTCAAAAACCTTTTATTGTTGTTCATTCTAGTCGAACGTGAGATGATTTCTA
* ** * *
38197392 CTGTATGAAATGCAAT-TGTTCCATTAGTATGTTTTTCAAGCCAAATTGTG-T-TGTCTTAAAAG
322 TTGTATGAAATGTGATCT-TTCCATTAGTATGTTTTCCAAGCCAAAATGTGTTCTGTCTTAAAAG
* * *
38197454 AATCAAGCTCTCAAAGTAGCATACTTGAAACAGAAAA-TTTGAAATT-T-GGCAAGTTGTGACCA
386 AACCAAGCTC-CAAAGTAGCCTACTTGAAACAGAAAACTTTGAAATTCTAGGCAAGTTGTGACGA
* * *
38197516 TTCTCAATGTTTTAAGCCCCGAATATTAGGTTTTTGGTTACTCTTTTTGATCAAACAAAATTTTC
450 TTTTCAATGTTTTAAGCCCCGAATATTAGGCTTTTGGTTACTCTTTTTGATCAAACAAAATTTTT
* * ** ** *
38197581 TGTTTTAGAATTACGTTCCAGGTCTAAATTAATATTATTAAAATTACCAAATTTTTTAAAGAGCA
515 TGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACCACCAAATTTTTGAAAGAGCA
* * * * * * *
38197646 TAGAGTTTTGATAACTTATAATGAGCCAAAAAGTTATTGAGGTTTTGAAATATATAATATAAAAT
580 TAGAGTTTTGATAACTTAAAATGAGTCAAAAAGTCATTGAGATTCTGAAATATATGATATAAAAA
* * * * * * * *
38197711 TTTTAGATTTTATTCCATATTATTATTGTTGTTGATCAAATTATT
645 CTTTATATTTTATTTCATTTTAATATTATTGTTGGTCAAATTATG
* * * *
38197756 TTTTATTAAGGTAAACATTATATTAAATTAA-ATTTGAATTTTTTTTGTTCAATTTATATATTTA
1 TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTA
** * * * * *
38197820 TATATATTAA-AGGCTTATAGAATTACCATACTTGTTCAATTACTCAAGAGGTTATCGAACAACC
66 TATATA-TAACAAACTTATAGAATT-CCACACTTGTTTAGTTACTC-GGAGGTTACCGAACAACC
* * * * *
38197884 GAAATG-CCTTCTAATCGAAACCTCAAACCAAAAATGAAAT
128 -AAAAGAGCTTCGAATCGAAACCACAAACCAAAATTGAAAT
38197924 CAAATCAACA
Statistics
Matches: 2969, Mismatches: 477, Indels: 316
0.79 0.13 0.08
Matches are distributed among these distances:
647 187 0.06
648 1 0.00
649 11 0.00
650 44 0.01
651 2 0.00
652 96 0.03
653 2 0.00
654 2 0.00
657 4 0.00
658 3 0.00
659 1 0.00
660 9 0.00
661 5 0.00
662 1 0.00
663 12 0.00
664 59 0.02
665 12 0.00
666 210 0.07
667 109 0.04
668 196 0.07
669 2 0.00
670 5 0.00
671 35 0.01
672 92 0.03
673 81 0.03
674 16 0.01
675 15 0.01
676 1 0.00
677 12 0.00
678 6 0.00
679 3 0.00
680 9 0.00
681 1 0.00
682 2 0.00
683 4 0.00
684 1 0.00
686 2 0.00
689 2 0.00
690 1 0.00
691 5 0.00
692 7 0.00
693 414 0.14
694 9 0.00
695 3 0.00
696 13 0.00
697 28 0.01
698 11 0.00
699 61 0.02
700 30 0.01
701 9 0.00
702 9 0.00
703 200 0.07
704 39 0.01
705 616 0.21
706 49 0.02
707 6 0.00
708 48 0.02
709 3 0.00
710 147 0.05
711 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (689 bp):
TTTTATTAAGGTAAACATCATATTAAATTAATTTTTAAATTTTTTTTGTTGAATTTATATATTTA
TATATATAACAAACTTATAGAATTCCACACTTGTTTAGTTACTCGGAGGTTACCGAACAACCAAA
AGAGCTTCGAATCGAAACCACAAACCAAAATTGAAATTGAATCCCCAAATTGAAATCGAATCTAA
AACCCTAAATGAAACCTATATCAAAATCCCAAATTTAAGGCTTTCAATAGATTTGGATAACTAAA
TTTAAGGCTTTCAAAAACCTTTTATTGTTGTTCATTCTAGTCGAACGTGAGATGATTTCTATTGT
ATGAAATGTGATCTTTCCATTAGTATGTTTTCCAAGCCAAAATGTGTTCTGTCTTAAAAGAACCA
AGCTCCAAAGTAGCCTACTTGAAACAGAAAACTTTGAAATTCTAGGCAAGTTGTGACGATTTTCA
ATGTTTTAAGCCCCGAATATTAGGCTTTTGGTTACTCTTTTTGATCAAACAAAATTTTTTGTTTT
AGAATTACATTTCAACTCTAAATTAATATTATTAAAACCACCAAATTTTTGAAAGAGCATAGAGT
TTTGATAACTTAAAATGAGTCAAAAAGTCATTGAGATTCTGAAATATATGATATAAAAACTTTAT
ATTTTATTTCATTTTAATATTATTGTTGGTCAAATTATG
Found at i:38198190 original size:143 final size:143
Alignment explanation
Indices: 38197932--38198215 Score: 433
Period size: 143 Copynumber: 2.0 Consensus size: 143
38197922 ATCAAATCAA
* * *
38197932 CAAATCGTGGACAAATCTAAAACCCCAAACTAGACCCTAAATTTAAACATAACTTAAAATCCCAA
1 CAAATCGTAGACAAATCTAAAACCCCAAACCAGACCCCAAATTTAAACATAACTTAAAATCCCAA
* *
38197997 ATTAAAGCTGTGAACAAATTTAGGTAACTAAATTTCAAGCTTTCTAAAACATTCTATTGTAGCTC
66 ATTAAAGCTGTCAACAAATTTAGGTAAATAAATTTCAAGCTTTCTAAAACATTCTATTGTAGCTC
38198062 ATTCTAGTCAACC
131 ATTCTAGTCAACC
* * *
38198075 CAAATCGTAGACGAATCTAAAACCCCAAACCAGACCCCAAATTTAAACCTAAGTTAAAATCCCAA
1 CAAATCGTAGACAAATCTAAAACCCCAAACCAGACCCCAAATTTAAACATAACTTAAAATCCCAA
* * * * * * *
38198140 ATTGAAGCTTTCAATAGATTTGGGTAAATAAGTTTCAAGCTTTCTAAAACATTCTATTGTTGCTC
66 ATTAAAGCTGTCAACAAATTTAGGTAAATAAATTTCAAGCTTTCTAAAACATTCTATTGTAGCTC
38198205 ATTCTAGTCAA
131 ATTCTAGTCAA
38198216 ACATAAGATG
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
143 126 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (143 bp):
CAAATCGTAGACAAATCTAAAACCCCAAACCAGACCCCAAATTTAAACATAACTTAAAATCCCAA
ATTAAAGCTGTCAACAAATTTAGGTAAATAAATTTCAAGCTTTCTAAAACATTCTATTGTAGCTC
ATTCTAGTCAACC
Found at i:38198773 original size:25 final size:24
Alignment explanation
Indices: 38198737--38198817 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 24
38198727 GTCTTTGAAA
*
38198737 TGAAACCACAAACCAAACTTGAAAT
1 TGAAACCCCAAACCAAACTT-AAAT
* **
38198762 TGAATCCCCAAATTGAAAC-TAAAT
1 TGAAACCCCAAA-CCAAACTTAAAT
38198786 CT-AAACCCCCAAACCAAACCTTAAAT
1 -TGAAA-CCCCAAACCAAA-CTTAAAT
38198812 TGAAAC
1 TGAAAC
38198818 ATAAGTCGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
24 9 0.21
25 22 0.51
26 12 0.28
ACGTcount: A:0.48, C:0.27, G:0.06, T:0.19
Consensus pattern (24 bp):
TGAAACCCCAAACCAAACTTAAAT
Found at i:38198786 original size:19 final size:20
Alignment explanation
Indices: 38198749--38198786 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
38198739 AAACCACAAA
* *
38198749 CCAAACTTGAAATTGAATCC
1 CCAAACTTGAAACTAAATCC
38198769 CCAAA-TTGAAACTAAATC
1 CCAAACTTGAAACTAAATC
38198787 TAAACCCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.24
Consensus pattern (20 bp):
CCAAACTTGAAACTAAATCC
Found at i:38200282 original size:7 final size:7
Alignment explanation
Indices: 38200272--38200320 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
38200262 CCACAAACAA
38200272 TAAACCC
1 TAAACCC
38200279 TAAACCC
1 TAAACCC
38200286 TAAACCC
1 TAAACCC
*
38200293 -AAATCC
1 TAAACCC
*
38200299 -AAACCT
1 TAAACCC
*
38200305 TAAACAC
1 TAAACCC
38200312 TAAACCC
1 TAAACCC
38200319 TA
1 TA
38200321 TTTCTTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
6 9 0.26
7 26 0.74
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:38200924 original size:68 final size:69
Alignment explanation
Indices: 38200792--38200926 Score: 179
Period size: 69 Copynumber: 2.0 Consensus size: 69
38200782 GAGTATTTTG
* *
38200792 ATAAAAAAATTAGAGGTGTTAACAAATTGACTTTAAAATCTGAAATATGAAAAGTACATGGACTA
1 ATAAAAAAATTAGAGGTGTGAACAAATTGACTTTAAAATCTGAAATATGAAAAGTAAATGGACTA
38200857 AAAT
66 AAAT
* *
38200861 ATAAAGAAATTAGTA-GTGTGAACAATTTGAC-TTAAATAT-TGAAATATGAAAAGTATAAT-GA
1 ATAAAAAAATTAG-AGGTGTGAACAAATTGACTTTAAA-ATCTGAAATATGAAAAGTA-AATGGA
38200922 CTAAA
63 CTAAA
38200927 TTTGAAATAT
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
68 28 0.47
69 30 0.51
70 1 0.02
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (69 bp):
ATAAAAAAATTAGAGGTGTGAACAAATTGACTTTAAAATCTGAAATATGAAAAGTAAATGGACTA
AAAT
Found at i:38205122 original size:40 final size:40
Alignment explanation
Indices: 38205051--38205158 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 40
38205041 ACCAAAATGT
* *
38205051 AAACAAGGGCACGTAAGTGCAATCAGGGGTACCAAAGTAC
1 AAACAAGGGCACGTATGTGCAATCAGAGGTACCAAAGTAC
* * *
38205091 AAACAGGGGCACGTATGTGTAATC-GAAGGTACCGAAGTAC
1 AAACAAGGGCACGTATGTGCAATCAG-AGGTACCAAAGTAC
* *
38205131 AAATAAGGTCACGTATGTGCAATCAGAG
1 AAACAAGGGCACGTATGTGCAATCAGAG
38205159 TATAATTTAC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.02
40 55 0.96
41 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.28, T:0.17
Consensus pattern (40 bp):
AAACAAGGGCACGTATGTGCAATCAGAGGTACCAAAGTAC
Found at i:38207828 original size:50 final size:50
Alignment explanation
Indices: 38207721--38207918 Score: 234
Period size: 50 Copynumber: 3.8 Consensus size: 50
38207711 ATTTGGGTAA
* *
38207721 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
*
38207777 AGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
38207827 AGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
38207877 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
38207919 GTAAAGAAAA
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
50 81 0.65
53 3 0.02
55 1 0.01
56 40 0.32
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:38209887 original size:26 final size:26
Alignment explanation
Indices: 38209857--38209960 Score: 79
Period size: 26 Copynumber: 3.9 Consensus size: 26
38209847 CTATTTACCC
38209857 TTTTTA-TCT-ATTTATTTCTTATTTTA
1 TTTTTATTCTAATTTA-TT-TTATTTTA
38209883 TTTTTATTCTAATTTATTTTATTTTA
1 TTTTTATTCTAATTTATTTTATTTTA
* * * *
38209909 TCTTTCTTTTATTTTATTTTTAGTATTTA
1 TTTTTATTCTAATTTA-TTTTA-T-TTTA
* *
38209938 TTCTTATTCTTA-TTATTGTTATT
1 TTTTTATTCTAATTTATT-TTATT
38209961 CACTATTATT
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
26 27 0.44
27 13 0.21
28 12 0.19
29 10 0.16
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (26 bp):
TTTTTATTCTAATTTATTTTATTTTA
Found at i:38209899 original size:21 final size:19
Alignment explanation
Indices: 38209875--38209930 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 19
38209865 TATTTATTTC
38209875 TTATTTTATTTTTATTCTAAT
1 TTATTTTATTTTTATTCT--T
*
38209896 TTATTTTATTTTATCTTTCTT
1 TTATTTTATTTT-T-ATTCTT
38209917 TTATTTTATTTTTA
1 TTATTTTATTTTTA
38209931 GTATTTATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 1 0.03
21 25 0.81
22 1 0.03
23 4 0.13
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (19 bp):
TTATTTTATTTTTATTCTT
Found at i:38211551 original size:6 final size:6
Alignment explanation
Indices: 38211540--38211606 Score: 66
Period size: 6 Copynumber: 11.0 Consensus size: 6
38211530 TTTTTCAATA
* * *
38211540 TTATTT TTATTT TTATTT TTATTT TTACTT TTACTT TTA-CT TT-TTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
38211586 TTAGTTGT GTTATTT TTATTT
1 TTA-TT-T -TTATTT TTATTT
38211607 CTTAGACTTC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
5 6 0.11
6 38 0.72
7 3 0.06
8 3 0.06
9 3 0.06
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:38215917 original size:25 final size:25
Alignment explanation
Indices: 38215889--38215939 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
38215879 AACGCCTTTT
38215889 AATCAAAACACCAAACCAAAAATGA
1 AATCAAAACACCAAACCAAAAATGA
* * * *
38215914 AATCGAATCACCAAATCAAAATTGA
1 AATCAAAACACCAAACCAAAAATGA
38215939 A
1 A
38215940 GCACAAAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.59, C:0.22, G:0.06, T:0.14
Consensus pattern (25 bp):
AATCAAAACACCAAACCAAAAATGA
Found at i:38216270 original size:54 final size:53
Alignment explanation
Indices: 38216197--38216302 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
38216187 AATATAAAAT
*
38216197 CAAAATTAAGAATTCGAATTTTAAGATGCATCAATCAAATTCAAAATTTTGAAA
1 CAAAATTAAGAATTCGAATTTTAAGATGCATCAACCAAATT-AAAATTTTGAAA
* * * *
38216251 CAAAATTATA-AATTTGAATTTTAAGATTCCTCAACCAAATTTAAATTTTGAA
1 CAAAATTA-AGAATTCGAATTTTAAGATGCATCAACCAAATTAAAATTTTGAA
38216303 GAAAAAAACC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 10 0.22
54 35 0.76
55 1 0.02
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.35
Consensus pattern (53 bp):
CAAAATTAAGAATTCGAATTTTAAGATGCATCAACCAAATTAAAATTTTGAAA
Found at i:38216920 original size:11 final size:11
Alignment explanation
Indices: 38216891--38216971 Score: 112
Period size: 11 Copynumber: 7.4 Consensus size: 11
38216881 TAAATCCTTT
38216891 CTCTCAATTT-
1 CTCTCAATTTC
38216901 CTCTCCAATATT-
1 CTCT-CAAT-TTC
38216913 CTCTCAATTTC
1 CTCTCAATTTC
38216924 CTCTCAATTTC
1 CTCTCAATTTC
38216935 CTCTCAATTTC
1 CTCTCAATTTC
*
38216946 CTTTCAATTTC
1 CTCTCAATTTC
*
38216957 CTCTCAAATTC
1 CTCTCAATTTC
38216968 CTCT
1 CTCT
38216972 TAAAAATGCT
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
10 6 0.09
11 53 0.82
12 6 0.09
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:38218589 original size:7 final size:7
Alignment explanation
Indices: 38218577--38218601 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
38218567 AGTCGATTGA
38218577 TATTTAG
1 TATTTAG
38218584 TATTTAG
1 TATTTAG
38218591 TATTTAG
1 TATTTAG
38218598 TATT
1 TATT
38218602 ATGTATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:38219250 original size:18 final size:18
Alignment explanation
Indices: 38219227--38219269 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
38219217 TGCCAGGTGC
* *
38219227 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTCTAT
38219245 GTATCCTAACCCTTCTAT
1 GTATCCTAACCCTTCTAT
*
38219263 GTTTCCT
1 GTATCCT
38219270 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.16, C:0.30, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTCTAT
Found at i:38219535 original size:21 final size:21
Alignment explanation
Indices: 38219510--38219569 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
38219500 CCAACACCGA
38219510 CAACCAG-ATCCCCTACCGGAG
1 CAACCAGAATCCCC-ACCGGAG
* *
38219531 GAACCAGAATCCCCGCCGGAG
1 CAACCAGAATCCCCACCGGAG
* *
38219552 CAACCACAACCCCCACCG
1 CAACCAGAATCCCCACCG
38219570 AAAGCTGGAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 26 0.81
22 6 0.19
ACGTcount: A:0.30, C:0.47, G:0.18, T:0.05
Consensus pattern (21 bp):
CAACCAGAATCCCCACCGGAG
Found at i:38219732 original size:34 final size:35
Alignment explanation
Indices: 38219688--38219755 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 35
38219678 ATTTTGAATA
*
38219688 TTTTGATATTATTTGATGTAATAAAATAAAAATTC
1 TTTTGATATTATTTAATGTAATAAAATAAAAATTC
*
38219723 TTTT-ATATTATTTAATGTAATAAAATAGAAATT
1 TTTTGATATTATTTAATGTAATAAAATAAAAATT
38219756 TACTTTTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 27 0.87
35 4 0.13
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.47
Consensus pattern (35 bp):
TTTTGATATTATTTAATGTAATAAAATAAAAATTC
Found at i:38219779 original size:35 final size:34
Alignment explanation
Indices: 38219695--38219784 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 34
38219685 ATATTTTGAT
* * *
38219695 ATTATTTGATGTAATAAAATAAAAATTCTTTTAT
1 ATTATTTAATATAATAAAATAAAAATTCTTTTAC
* *
38219729 ATTATTTAATGTAATAAAATAGAAATTTACTTTTAC
1 ATTATTTAATATAATAAAATA-AAAATT-CTTTTAC
38219765 ATT-TTTAATATAATAGAAAT
1 ATTATTTAATATAATA-AAAT
38219785 TCTTTTAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 20 0.41
35 16 0.33
36 13 0.27
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (34 bp):
ATTATTTAATATAATAAAATAAAAATTCTTTTAC
Found at i:38223196 original size:125 final size:125
Alignment explanation
Indices: 38222963--38223256 Score: 444
Period size: 125 Copynumber: 2.3 Consensus size: 125
38222953 TCAGGCCAAA
* * * * *
38222963 CAGGAACTGCTGTAGCAAAAGCGCATCCACGTGGGAGCTTCTTTCAGTACTTTTGCTTACAAAGC
1 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTT-TTTCAGTACTTTTCCTAACAAAGC
* * * *
38223028 GTCCTGCTTAAAGCGTTTTTGACACTATTTGCTCTGAACCGTCTACTCAAAATTATTTTTT
65 ATCCTGCTTAAAGCGTTTTTAACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
* * * *
38223089 TAGGAGCTACTGTAGTAAAAGCGCGTCCACGTGAGAGCTTTTTCAGTATTTTTCCTAACAAAGCA
1 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTCAGTACTTTTCCTAACAAAGCA
*
38223154 TCCTGCTTAAAGCGTTTTTAACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTT
66 TCCTGCTTAAAGCGTTTTTAACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
*
38223214 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTT
1 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTT
38223257 TAAATTAACA
Statistics
Matches: 150, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
125 116 0.77
126 34 0.23
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (125 bp):
CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTCAGTACTTTTCCTAACAAAGCA
TCCTGCTTAAAGCGTTTTTAACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
Found at i:38225798 original size:16 final size:16
Alignment explanation
Indices: 38225777--38225807 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
38225767 AAATAAATCT
38225777 TTTAATTAGATTTATA
1 TTTAATTAGATTTATA
38225793 TTTAATTAGATTTAT
1 TTTAATTAGATTTAT
38225808 TTAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTAATTAGATTTATA
Found at i:38229729 original size:26 final size:26
Alignment explanation
Indices: 38229702--38229781 Score: 85
Period size: 26 Copynumber: 3.1 Consensus size: 26
38229692 TGTATGATAG
*
38229702 TTGGGCTAGGTGTAGTTGGGTTTAAGT
1 TTGGGCTAGGT-TAATTGGGTTTAAGT
*
38229729 TTGGGCTAGGTTAATTGGG-TTAGATT
1 TTGGGCTAGGTTAATTGGGTTTA-AGT
*
38229755 TTGGGCT-GG-TAACTTGGGTTTAGGT
1 TTGGGCTAGGTTAA-TTGGGTTTAAGT
38229780 TT
1 TT
38229782 AATTTATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
24 3 0.07
25 13 0.28
26 19 0.41
27 11 0.24
ACGTcount: A:0.15, C:0.05, G:0.38, T:0.42
Consensus pattern (26 bp):
TTGGGCTAGGTTAATTGGGTTTAAGT
Found at i:38230525 original size:14 final size:15
Alignment explanation
Indices: 38230489--38230529 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
38230479 CATTAGCTTC
* *
38230489 TTTGTTTTATTCATT
1 TTTGCTTTATTTATT
38230504 TTTGCTTTATTTATT
1 TTTGCTTTATTTATT
38230519 TTT-CTTTATTT
1 TTTGCTTTATTT
38230530 GATTGGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.76
Consensus pattern (15 bp):
TTTGCTTTATTTATT
Found at i:38238956 original size:24 final size:23
Alignment explanation
Indices: 38238922--38238967 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
38238912 TAAAAATAAA
*
38238922 GTTGATATTATTCACATAAAAATT
1 GTTGATATTATTCA-ACAAAAATT
*
38238946 GTTGATTTTATTCAACAAAAAT
1 GTTGATATTATTCAACAAAAAT
38238968 ATAGCGTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (23 bp):
GTTGATATTATTCAACAAAAATT
Done.