Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 12 of 135
Found at i:5491039 original size:3 final size:3
Alignment explanation
Indices: 5491031--5491061 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
5491021 AATTCAAAAG
5491031 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
5491062 AAGAAACCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:5498499 original size:18 final size:18
Alignment explanation
Indices: 5498466--5498503 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
5498456 TCTTTTAATG
5498466 TTTATTTTATTATTATTA
1 TTTATTTTATTATTATTA
5498484 TTTATATTTATT-TTATTA
1 TTTAT-TTTATTATTATTA
5498502 TT
1 TT
5498504 CATGTTTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTTATTATTATTA
Found at i:5500121 original size:21 final size:20
Alignment explanation
Indices: 5500097--5500140 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
5500087 AAAATATTAA
* *
5500097 AAATACTTTTTATAATATTTT
1 AAATAATTTTAATAAT-TTTT
*
5500118 AAATAATTTTAATGATTTTT
1 AAATAATTTTAATAATTTTT
5500138 AAA
1 AAA
5500141 AATAAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
AAATAATTTTAATAATTTTT
Found at i:5500196 original size:7 final size:8
Alignment explanation
Indices: 5500161--5500202 Score: 75
Period size: 8 Copynumber: 5.2 Consensus size: 8
5500151 TGAATTTTTG
5500161 AATTTTAA
1 AATTTTAA
5500169 AATTTTAA
1 AATTTTAA
5500177 AATTTTAA
1 AATTTTAA
5500185 AATTTTAA
1 AATTTTAA
*
5500193 ATTTTTAA
1 AATTTTAA
5500201 AA
1 AA
5500203 ACTAATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
AATTTTAA
Found at i:5500202 original size:24 final size:24
Alignment explanation
Indices: 5500143--5500202 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
5500133 TTTTTAAAAA
* **
5500143 TAAATTTTT-GAATTTTTGAATTT
1 TAAATTTTTAAAATTTTAAAATTT
*
5500166 TAAAATTTTAAAATTTTAAAATTT
1 TAAATTTTTAAAATTTTAAAATTT
5500190 TAAATTTTTAAAA
1 TAAATTTTTAAAA
5500203 ACTAATTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
23 8 0.26
24 23 0.74
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (24 bp):
TAAATTTTTAAAATTTTAAAATTT
Found at i:5500922 original size:20 final size:19
Alignment explanation
Indices: 5500890--5500932 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
5500880 AAAAAATAAT
*
5500890 TTTTAATTCTTTTATTCTC
1 TTTTAATTATTTTATTCTC
*
5500909 TTTTACATTATTTTTTTCTC
1 TTTTA-ATTATTTTATTCTC
5500929 TTTT
1 TTTT
5500933 TCCCCTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTAATTATTTTATTCTC
Found at i:5502991 original size:3 final size:3
Alignment explanation
Indices: 5502977--5503038 Score: 97
Period size: 3 Copynumber: 20.0 Consensus size: 3
5502967 ATACTTCAAG
5502977 ATA ATGA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
5503023 ATA ACA ATAA ATA ATA
1 ATA ATA AT-A ATA ATA
5503039 TGAAGATTTG
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
3 49 0.89
4 6 0.11
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:5504123 original size:16 final size:16
Alignment explanation
Indices: 5504102--5504135 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
5504092 TCAATCTTTC
5504102 TTCTCTTTCTCCTATT
1 TTCTCTTTCTCCTATT
* *
5504118 TTCTCTTTGTGCTATT
1 TTCTCTTTCTCCTATT
5504134 TT
1 TT
5504136 GTTATTTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.24, G:0.06, T:0.65
Consensus pattern (16 bp):
TTCTCTTTCTCCTATT
Found at i:5504389 original size:14 final size:15
Alignment explanation
Indices: 5504367--5504395 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5504357 TTTTGGGCTG
5504367 GTAATTTGGGTTATT
1 GTAATTTGGGTTATT
5504382 GTAA-TTGGGTTATT
1 GTAATTTGGGTTATT
5504396 TTTGGACTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (15 bp):
GTAATTTGGGTTATT
Found at i:5505731 original size:35 final size:35
Alignment explanation
Indices: 5505683--5505758 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
5505673 GATTATAAGA
* * *
5505683 AAAAATACTCAAATAAAATATCACTAAGTTTATAT
1 AAAATTACCCAAATAAAATATCACTAAATTTATAT
5505718 AAAATTACCCAAATAAAATATCACTAAATTTATAT
1 AAAATTACCCAAATAAAATATCACTAAATTTATAT
*
5505753 AGAATT
1 AAAATT
5505759 TTTCTTTAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.32
Consensus pattern (35 bp):
AAAATTACCCAAATAAAATATCACTAAATTTATAT
Found at i:5506930 original size:18 final size:19
Alignment explanation
Indices: 5506909--5506945 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
5506899 TTATTAAAAA
5506909 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
5506927 TATAAATATTTAGAATTTT
1 TATAAATATTTAGAATTTT
5506946 GAAAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:5506951 original size:18 final size:18
Alignment explanation
Indices: 5506910--5506952 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
5506900 TATTAAAAAT
*
5506910 ATAAATTTTAGAATTTTT
1 ATAAATTTTAGAATTTTG
5506928 ATAAATATTTAGAATTTTG
1 ATAAAT-TTTAGAATTTTG
5506947 A-AAATT
1 ATAAATT
5506953 AATTTGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 12 0.52
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (18 bp):
ATAAATTTTAGAATTTTG
Found at i:5511168 original size:32 final size:32
Alignment explanation
Indices: 5511122--5511203 Score: 101
Period size: 32 Copynumber: 2.6 Consensus size: 32
5511112 TGTCAATCAT
*
5511122 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAACTTAAAACATAATAAA
* * * *
5511154 TTCAATATCTAACAAATTTAAGACATAATAAT
1 TTCAATATCCAACAAACTTAAAACATAATAAA
* *
5511186 TTCAAAACCCAACAAACT
1 TTCAATATCCAACAAACT
5511204 AATTTCAATA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (32 bp):
TTCAATATCCAACAAACTTAAAACATAATAAA
Found at i:5514683 original size:4 final size:4
Alignment explanation
Indices: 5514676--5514758 Score: 166
Period size: 4 Copynumber: 20.8 Consensus size: 4
5514666 TTATTACTGA
5514676 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
5514724 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
5514759 AAATATGCAA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 79 1.00
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:5515740 original size:17 final size:18
Alignment explanation
Indices: 5515718--5515751 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
5515708 AACATCACAT
5515718 ATAAATTCATTT-ATAAC
1 ATAAATTCATTTCATAAC
*
5515735 ATAAATTGATTTCATAA
1 ATAAATTCATTTCATAA
5515752 GATGCATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (18 bp):
ATAAATTCATTTCATAAC
Found at i:5533240 original size:28 final size:28
Alignment explanation
Indices: 5533153--5533241 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 28
5533143 TATACAGTGT
* * *
5533153 CAGT-ACAGTGTGGGCCTTCGCCCATTA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
* ** * *
5533180 CAGTATCAGCGTGGACCTTAGCCTAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
5533208 CAGTAACAATGTGGGCCTTAGCCCAGTA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
5533236 TAGTAA
1 CAGTAA
5533242 ATAGTACAAT
Statistics
Matches: 48, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
27 4 0.08
28 44 0.92
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (28 bp):
CAGTAACAATGTGGGCCTTAGCCCAATA
Found at i:5533376 original size:26 final size:26
Alignment explanation
Indices: 5533346--5533425 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
5533336 GTCAACACAC
5533346 CAATATCGCAGCAAAGCTGCCAGTAA
1 CAATATCGCAGCAAAGCTGCCAGTAA
* *
5533372 TAATAAT-GCAGCAGAGCTGCCAGTAA
1 CAAT-ATCGCAGCAAAGCTGCCAGTAA
* * *
5533398 CAGTAGCACAGCAAAGCTGCCAGTAA
1 CAATATCGCAGCAAAGCTGCCAGTAA
5533424 CA
1 CA
5533426 GTATTTGTGG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
25 1 0.02
26 42 0.93
27 2 0.04
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (26 bp):
CAATATCGCAGCAAAGCTGCCAGTAA
Found at i:5533638 original size:27 final size:26
Alignment explanation
Indices: 5533619--5533738 Score: 78
Period size: 27 Copynumber: 4.5 Consensus size: 26
5533609 TTTGCCTTAT
5533619 GGGGGTATTTCGGGCATTTTACCCTTC
1 GGGGGTATTTCGGGCATTTTA-CCTTC
* *
5533646 GGGGGTATTTTGGTCATTTTACCTTTC
1 GGGGGTATTTCGGGCATTTTACC-TTC
*** **** *
5533673 AAAGGTATTTCAATAATTTTACCCTTT
1 GGGGGTATTTCGGGCATTTTA-CCTTC
* ** *
5533700 GAGGGTATTTCGGTAATTTTACCTTAT
1 GGGGGTATTTCGGGCATTTTACCTT-C
5533727 GGGGGTATTTCG
1 GGGGGTATTTCG
5533739 ATAATTTTAC
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
26 6 0.08
27 67 0.89
28 2 0.03
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.42
Consensus pattern (26 bp):
GGGGGTATTTCGGGCATTTTACCTTC
Found at i:5533731 original size:81 final size:80
Alignment explanation
Indices: 5533621--5533883 Score: 321
Period size: 81 Copynumber: 3.3 Consensus size: 80
5533611 TGCCTTATGG
** * * *
5533621 GGGTATTTCGGGCATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCTTTCAAAGGTATTTCAA
1 GGGTATTTCGGTAATTTTA-CCTTTGGGGGTATTTTGGTAATTTTACCTTTCAAAGGTATTTCGA
5533686 TAATTTTACCCTTTGA
65 TAATTTTACCCTTTGA
* * *
5533702 GGGTATTTCGGTAATTTTACCTTATGGGGGTATTTCGATAATTTTACCCTTT-GAAGGTATTTCG
1 GGGTATTTCGGTAATTTTACCTT-TGGGGGTATTTTGGTAATTTTA-CCTTTCAAAGGTATTTCG
5533766 ATAATTTTACCCTTTGA
64 ATAATTTTACCCTTTGA
** * * * * ** *
5533783 GGGTATTTTAGTAATTTTACCCTTGAGGGTATTTTAGTAATTTTACCCTTCAGTGGTATTTCGGT
1 GGGTATTTCGGTAATTTTACCTTTGGGGGTATTTTGGTAATTTTACCTTTCAAAGGTATTTCGAT
*
5533848 AATTTTATCCTTTGA
66 AATTTTACCCTTTGA
*
5533863 GGGTATTTTGGTAATTTTACC
1 GGGTATTTCGGTAATTTTACC
5533884 CTATATGAGT
Statistics
Matches: 157, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
79 4 0.03
80 66 0.42
81 82 0.52
82 5 0.03
ACGTcount: A:0.21, C:0.14, G:0.20, T:0.45
Consensus pattern (80 bp):
GGGTATTTCGGTAATTTTACCTTTGGGGGTATTTTGGTAATTTTACCTTTCAAAGGTATTTCGAT
AATTTTACCCTTTGA
Found at i:5533743 original size:27 final size:27
Alignment explanation
Indices: 5533634--5533907 Score: 258
Period size: 27 Copynumber: 10.2 Consensus size: 27
5533624 TATTTCGGGC
* * * * *
5533634 ATTTTACCCTTCGGGGGTATTTTGGTC
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
5533661 ATTTTA-CCTTTCAAAGGTATTTCAATA
1 ATTTTACCCTTT-GAGGGTATTTCGATA
*
5533688 ATTTTACCCTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTTGAGGGTATTTCGATA
*
5533715 ATTTTA-CCTTATGGGGGTATTTCGATA
1 ATTTTACCCTT-TGAGGGTATTTCGATA
*
5533742 ATTTTACCCTTTGAAGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
*
5533769 ATTTTACCCTTTGAGGGTATTT-TAGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
*
5533796 ATTTTACCC-TTGAGGGTATTT-TAGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
* *
5533822 ATTTTACCC-TTCAGTGGTATTTCGGTA
1 ATTTTACCCTTTGAG-GGTATTTCGATA
* * *
5533849 ATTTTATCCTTTGAGGGTATTTTGGTA
1 ATTTTACCCTTTGAGGGTATTTCGATA
*
5533876 ATTTTACCCTATATGA--GTATTTTGATA
1 ATTTTACCCT-T-TGAGGGTATTTCGATA
5533903 ATTTT
1 ATTTT
5533908 TCAGCCCAAG
Statistics
Matches: 211, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
26 39 0.18
27 155 0.73
28 14 0.07
29 3 0.01
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (27 bp):
ATTTTACCCTTTGAGGGTATTTCGATA
Found at i:5533885 original size:54 final size:53
Alignment explanation
Indices: 5533621--5533885 Score: 289
Period size: 54 Copynumber: 4.9 Consensus size: 53
5533611 TGCCTTATGG
** * * * *
5533621 GGGTATTTCGGGCATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCTTTCAA
1 GGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTTGGTAATTTTACCCTTC-A
* ** * * **
5533675 AGGTATTTCAATAATTTTACCCTTTGAGGGTATTTCGGTAATTTTACCTTATGG
1 GGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTTGGTAATTTTACCCT-TCA
* * * * *
5533729 GGGTATTTCGATAATTTTACCCTTTGAAGGTATTTCGATAATTTTACCCTTTGA
1 GGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTTGGTAATTTTACCC-TTCA
** *
5533783 GGGTATTTTAGTAATTTTACCC-TTGAGGGTATTTTAGTAATTTTACCCTTCA
1 GGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTTGGTAATTTTACCCTTCA
*
5533835 GTGGTATTTCGGTAATTTTATCCTTTGAGGGTATTTTGGTAATTTTACCCT
1 G-GGTATTTCGGTAATTTTACCCTTTGAGGGTATTTTGGTAATTTTACCCT
5533886 ATATGAGTAT
Statistics
Matches: 178, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
52 4 0.02
53 40 0.22
54 132 0.74
55 2 0.01
ACGTcount: A:0.21, C:0.14, G:0.20, T:0.45
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACCCTTTGAGGGTATTTTGGTAATTTTACCCTTCA
Found at i:5542128 original size:28 final size:28
Alignment explanation
Indices: 5542081--5542180 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 28
5542071 GAGCCCTATA
*
5542081 CAATATCAGT-ACAATGTGGGCCTTAGCC
1 CAATA-CAGTAACAACGTGGGCCTTAGCC
* * *
5542109 CATTACAGTAATAGCGTGGGCCTTAGCC
1 CAATACAGTAACAACGTGGGCCTTAGCC
* *
5542137 AAATACAGTAACAATGTGGGCCTTAGCC
1 CAATACAGTAACAACGTGGGCCTTAGCC
5542165 CAATACAGTAA-AACGT
1 CAATACAGTAACAACGT
5542181 ACAATGCAGT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 8 0.13
28 52 0.87
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (28 bp):
CAATACAGTAACAACGTGGGCCTTAGCC
Found at i:5542554 original size:27 final size:27
Alignment explanation
Indices: 5542510--5542971 Score: 445
Period size: 27 Copynumber: 17.2 Consensus size: 27
5542500 TATATCATTC
* *
5542510 ATTTTACCCTAT-GGGGGTATTTCGGTC
1 ATTTTACCCT-TCGAGGGTATTTCGGTA
** *
5542537 ATTTTACCCTTCGAGGGTATTTTAGTT
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
5542564 ATTTTACCCTTTGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* **
5542591 ATTTTACCCTTCGGGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * ***
5542618 ATTTTACCCTTCAAGGATATTTTAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
5542645 ATTTTACCATATTG-GGGTATTTCAGTA
1 ATTTTACCCT-TCGAGGGTATTTCGGTA
* *
5542672 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
5542699 ATTTTACCCTTCGAGGGTATTTTGGTG
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
5542726 ATTTTACCCTTCGAGGGT-TTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * * *
5542752 ATTTTACTCTTCAAGGTTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
5542779 ATTTTACCCTT--ATGGGTATTTTGGTA
1 ATTTTACCCTTCGA-GGGTATTTCGGTA
* *
5542805 ATTTTA-CCTTATGGGGGTATTTCGGTA
1 ATTTTACCCTT-CGAGGGTATTTCGGTA
* *
5542832 ATTTTACCCTAT-AAGGGTATTTCAGTA
1 ATTTTACCCT-TCGAGGGTATTTCGGTA
* **
5542859 ATTTTACCCTTTGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
5542886 ATTTTTCCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
5542913 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
5542940 ATTTTACCCTAT-GGGGGTATTTTGGTA
1 ATTTTACCCT-TCGAGGGTATTTCGGTA
5542967 ATTTT
1 ATTTT
5542972 CTGGCCCAAG
Statistics
Matches: 368, Mismatches: 55, Indels: 24
0.82 0.12 0.05
Matches are distributed among these distances:
25 5 0.01
26 41 0.11
27 316 0.86
28 5 0.01
29 1 0.00
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:5554637 original size:12 final size:11
Alignment explanation
Indices: 5554604--5554637 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
5554594 ATTCATATAC
5554604 CAAAAAAAAAA
1 CAAAAAAAAAA
5554615 -AAAAAAAAAA
1 CAAAAAAAAAA
5554625 CAAAGAAAAAAA
1 CAAA-AAAAAAA
5554637 C
1 C
5554638 GGAGATCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
11 3 0.14
12 8 0.38
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:5556861 original size:22 final size:21
Alignment explanation
Indices: 5556809--5556863 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 21
5556799 CTCTCTCCAA
*
5556809 GGTTAGGGCTTTTTATTTTTAT
1 GGTTAGGG-TTTTTATTTTTAG
5556831 GGTTAAGGG-TTTTATTTTATTAG
1 GGTT-AGGGTTTTTA-TTT-TTAG
5556854 GGTTAGGGTT
1 GGTTAGGGTT
5556864 AGGATTTAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 5 0.18
22 11 0.39
23 12 0.43
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (21 bp):
GGTTAGGGTTTTTATTTTTAG
Found at i:5561737 original size:18 final size:18
Alignment explanation
Indices: 5561714--5561750 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
5561704 AAGTTACATA
*
5561714 GGTACGGACACGGGCTGG
1 GGTACGGAAACGGGCTGG
5561732 GGTACGGAAACGGGCTGG
1 GGTACGGAAACGGGCTGG
5561750 G
1 G
5561751 ACATGACCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.51, T:0.11
Consensus pattern (18 bp):
GGTACGGAAACGGGCTGG
Found at i:5562600 original size:17 final size:18
Alignment explanation
Indices: 5562580--5562617 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
5562570 TTTTATATAA
*
5562580 TTATTAAGTA-TTTTAAG
1 TTATTAAGGAGTTTTAAG
*
5562597 TTATTTAGGAGTTTTAAG
1 TTATTAAGGAGTTTTAAG
5562615 TTA
1 TTA
5562618 ACAAAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.53
Consensus pattern (18 bp):
TTATTAAGGAGTTTTAAG
Found at i:5564202 original size:28 final size:29
Alignment explanation
Indices: 5564171--5564265 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 29
5564161 AATAGAGTTT
* * *
5564171 GCCATAATG-CATTCATTTAACTAAGATA
1 GCCATAAAGACATCCATTTAACAAAGATA
* *
5564199 GCCACAAAGACATCCTTTTAACAAAGATA
1 GCCATAAAGACATCCATTTAACAAAGATA
* * *
5564228 GCCATAAAGATATCCTTTTAACAGAGATA
1 GCCATAAAGACATCCATTTAACAAAGATA
5564257 GCCATAAAG
1 GCCATAAAG
5564266 GCTTCTTTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 7 0.12
29 51 0.88
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (29 bp):
GCCATAAAGACATCCATTTAACAAAGATA
Found at i:5564288 original size:28 final size:28
Alignment explanation
Indices: 5564186--5564335 Score: 126
Period size: 29 Copynumber: 5.2 Consensus size: 28
5564176 AATGCATTCA
* *
5564186 TTTAACTA-AGATAGCCACAAAGACATCCT
1 TTTAAC-AGAGATAGCCACAAAGGC-TTCT
* * *
5564215 TTTAACAAAGATAGCCATAAA-GATATCCT
1 TTTAACAGAGATAGCCACAAAGGCT-T-CT
*
5564244 TTTAACAGAGATAGCCATAAAGGCTTCT
1 TTTAACAGAGATAGCCACAAAGGCTTCT
* *
5564272 TTTAACAGATACT-GCCACAAAGGCTTCC
1 TTTAACAGAGA-TAGCCACAAAGGCTTCT
** *
5564300 TTTAGTAGAGATAGCCACAAAGGCTCCCT
1 TTTAACAGAGATAGCCACAAAGGCT-TCT
5564329 TTTAACA
1 TTTAACA
5564336 TAACCAGCTA
Statistics
Matches: 98, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
27 2 0.02
28 46 0.47
29 48 0.49
30 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (28 bp):
TTTAACAGAGATAGCCACAAAGGCTTCT
Found at i:5567312 original size:21 final size:20
Alignment explanation
Indices: 5567273--5567312 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
5567263 ACTGTTGATT
*
5567273 TTCAAAAGAAAATAGAGGAA
1 TTCAAAAGAAAACAGAGGAA
*
5567293 TTCAAATAGAGAACAGAGGA
1 TTCAAA-AGAAAACAGAGGA
5567313 TTTTTAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.55, C:0.07, G:0.23, T:0.15
Consensus pattern (20 bp):
TTCAAAAGAAAACAGAGGAA
Found at i:5569465 original size:112 final size:113
Alignment explanation
Indices: 5569313--5569545 Score: 337
Period size: 112 Copynumber: 2.1 Consensus size: 113
5569303 AGAATTAAAC
* *
5569313 AAAA-AAATTAAGAATGTGTTGGGCTGAGTAACTGCGGTGGGGTGCTTGGGTTGTCATTCCACTT
1 AAAATAAATTAAGAATATGTTGGGCTGAGTAACTGCGGTGGGGTG-TTGGGTTGTCACTCCACTT
*
5569377 CGCGTCAAAAGGGCCAAAACATTCTTAAACA-AAAAAAAAAATATAAT-
65 CGCGTCAAAAGGGCCAAAACATTCTTAAACATAAAAAAAAAATAAAATA
* * * *
5569424 ATAATAAATTAAGAGTATGTTGGGCTGAGTAACTGGGGTGGGGTGTTTGGTTGTCACTCCACTTC
1 AAAATAAATTAAGAATATGTTGGGCTGAGTAACTGCGGTGGGGTGTTGGGTTGTCACTCCACTTC
* * * *
5569489 GCGTCAAAAGGGCCAATACATTTTTAAGCATTAAAAAAAAATAAAATA
66 GCGTCAAAAGGGCCAAAACATTCTTAAACATAAAAAAAAAATAAAATA
5569537 AAAATAAAT
1 AAAATAAAT
5569546 AAGTAAAACG
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
111 48 0.45
112 51 0.48
113 8 0.07
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (113 bp):
AAAATAAATTAAGAATATGTTGGGCTGAGTAACTGCGGTGGGGTGTTGGGTTGTCACTCCACTTC
GCGTCAAAAGGGCCAAAACATTCTTAAACATAAAAAAAAAATAAAATA
Found at i:5569525 original size:111 final size:110
Alignment explanation
Indices: 5569315--5569541 Score: 330
Period size: 111 Copynumber: 2.1 Consensus size: 110
5569305 AATTAAACAA
* *
5569315 AAAAATTAAGAATGTGTTGGGCTGAGTAACTGCGGTGGGGTGCTTGGGTTGTCATTCCACTTCGC
1 AAAAATTAAGAATATGTTGGGCTGAGTAACTGCGGTGGGGTGCTTGGGTTGTCACTCCACTTCGC
*
5569380 GTCAAAAGGGCCAAAACATTCTTAAACAAAAAAAAAAATATAATAT
66 GTCAAAAGGGCCAAAACATTCTTAAACAAAAAAAAAAA-ATAAAAT
* * *
5569426 AATAAATTAAGAGTATGTTGGGCTGAGTAACTGGGGTGGGGTG-TTTGGTTGTCACTCCACTTCG
1 AA-AAATTAAGAATATGTTGGGCTGAGTAACTGCGGTGGGGTGCTTGGGTTGTCACTCCACTTCG
* * * **
5569490 CGTCAAAAGGGCCAATACATTTTTAAGCATTAAAAAAAAATAAAAT
65 CGTCAAAAGGGCCAAAACATTCTTAAACAAAAAAAAAAAATAAAAT
5569536 AAAAAT
1 AAAAAT
5569542 AAATAAGTAA
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
109 4 0.04
110 8 0.08
111 55 0.53
112 37 0.36
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.27
Consensus pattern (110 bp):
AAAAATTAAGAATATGTTGGGCTGAGTAACTGCGGTGGGGTGCTTGGGTTGTCACTCCACTTCGC
GTCAAAAGGGCCAAAACATTCTTAAACAAAAAAAAAAAATAAAAT
Found at i:5576516 original size:18 final size:18
Alignment explanation
Indices: 5576493--5576528 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
5576483 TCCCTCTCCC
5576493 TTCTCTTTTTTTCTATAT
1 TTCTCTTTTTTTCTATAT
*
5576511 TTCTCTTTTTTTGTATAT
1 TTCTCTTTTTTTCTATAT
5576529 AAAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.14, G:0.03, T:0.72
Consensus pattern (18 bp):
TTCTCTTTTTTTCTATAT
Found at i:5579745 original size:30 final size:30
Alignment explanation
Indices: 5579711--5579790 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
5579701 AGCTTCGGGT
*
5579711 ATCAAATTATAAAAAGGGATGGTAACAACC
1 ATCAAATTATGAAAAGGGATGGTAACAACC
** * *
5579741 ATCAAACAATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTAACAACC
*
5579771 ATTAAATTATGAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
5579791 TGCTTCGACT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.20
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATGGTAACAACC
Found at i:5598520 original size:14 final size:14
Alignment explanation
Indices: 5598501--5598540 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
5598491 TTGATTGGCA
5598501 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
5598515 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
5598529 GGAAAATGTTTT
1 GTAAAATGTTTT
5598541 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:5598549 original size:20 final size:20
Alignment explanation
Indices: 5598524--5598563 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
5598514 CGTAAAATGA
*
5598524 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
5598544 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
5598564 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:5598553 original size:34 final size:35
Alignment explanation
Indices: 5598509--5598575 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
5598499 CAGTAAAATG
*
5598509 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
5598543 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
5598576 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:5598579 original size:14 final size:15
Alignment explanation
Indices: 5598503--5598579 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
5598493 GATTGGCAGT
* *
5598503 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
5598517 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
5598531 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
5598551 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
5598566 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
5598580 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:5598640 original size:32 final size:32
Alignment explanation
Indices: 5598556--5598641 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 32
5598546 TCTGTAAAAT
* * *
5598556 GATTTACTGGAAAATATTTTCTGGTGTTTGATT
1 GATTTCCT-GAAAATATTTTCTGCTGTTTGATA
* *
5598589 GA-ATCTGTGTAAAATATTTTCTGCTGTTTGATA
1 GATTTC-CTG-AAAATATTTTCTGCTGTTTGATA
5598622 GATTTCCTGAAAATATTTTC
1 GATTTCCTGAAAATATTTTC
5598642 CGGAAAAGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
32 13 0.30
33 28 0.65
34 2 0.05
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (32 bp):
GATTTCCTGAAAATATTTTCTGCTGTTTGATA
Found at i:5601037 original size:7 final size:7
Alignment explanation
Indices: 5601025--5601050 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
5601015 AACAAATATT
5601025 GGGTTTA
1 GGGTTTA
5601032 GGGTTTA
1 GGGTTTA
5601039 GGGTTTA
1 GGGTTTA
5601046 GGGTT
1 GGGTT
5601051 GGGTTGGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.46, T:0.42
Consensus pattern (7 bp):
GGGTTTA
Found at i:5601367 original size:11 final size:11
Alignment explanation
Indices: 5601351--5601376 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
5601341 AACCATCTGT
5601351 ATATAACCAAA
1 ATATAACCAAA
5601362 ATATAACCAAA
1 ATATAACCAAA
5601373 ATAT
1 ATAT
5601377 CATCCAGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (11 bp):
ATATAACCAAA
Found at i:5601693 original size:18 final size:19
Alignment explanation
Indices: 5601656--5601699 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
5601646 GTTGCAATCC
*
5601656 AAGGGGAAGGGAAAATGG-
1 AAGGGGAAGGGAAAAGGGA
*
5601674 AAGGGGAAGGGAAAGGGGA
1 AAGGGGAAGGGAAAAGGGA
5601693 AAGGGGA
1 AAGGGGA
5601700 GAAGAAGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.55, T:0.02
Consensus pattern (19 bp):
AAGGGGAAGGGAAAAGGGA
Found at i:5602747 original size:21 final size:21
Alignment explanation
Indices: 5602705--5602745 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
5602695 CCATTAAAAG
5602705 AACAAATCAATTTAGCACTTT
1 AACAAATCAATTTAGCACTTT
5602726 AACAAAT-AA-TTAGCATCTTT
1 AACAAATCAATTTAGCA-CTTT
5602746 TACTTTTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (21 bp):
AACAAATCAATTTAGCACTTT
Found at i:5604065 original size:18 final size:18
Alignment explanation
Indices: 5604042--5604077 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
5604032 CGATCTCAAG
*
5604042 CTTCGTATAAAATTTCAC
1 CTTCGTATAAAATCTCAC
*
5604060 CTTCGTGTAAAATCTCAC
1 CTTCGTATAAAATCTCAC
5604078 GACGAAACTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (18 bp):
CTTCGTATAAAATCTCAC
Found at i:5607500 original size:39 final size:39
Alignment explanation
Indices: 5607417--5607508 Score: 105
Period size: 39 Copynumber: 2.4 Consensus size: 39
5607407 AAAATTGGGA
* * * * *
5607417 ATTAGCGGTGCTTCTGAGAAAGCCCCGCTAAAAATGAGC
1 ATTAGCGGCGTTTCTAAGAAAACCCCACTAAAAATGAGC
* *
5607456 TTTAGCGGCGTTTCTAAGAAAACGCCACTAAAAAT-ATGC
1 ATTAGCGGCGTTTCTAAGAAAACCCCACTAAAAATGA-GC
5607495 ATTAGCGGCGTTTC
1 ATTAGCGGCGTTTC
5607509 CGCCAAAAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
38 1 0.02
39 43 0.98
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (39 bp):
ATTAGCGGCGTTTCTAAGAAAACCCCACTAAAAATGAGC
Found at i:5608655 original size:15 final size:16
Alignment explanation
Indices: 5608637--5608675 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
5608627 TAGGAGTTAG
5608637 GGGTTAGGA-ATTTAA
1 GGGTTAGGAGATTTAA
*
5608652 GGGTTAGGAGATTTAT
1 GGGTTAGGAGATTTAA
5608668 GGGTTAGG
1 GGGTTAGG
5608676 GGTTAGGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.33
Consensus pattern (16 bp):
GGGTTAGGAGATTTAA
Found at i:5608676 original size:22 final size:21
Alignment explanation
Indices: 5608652--5608693 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
5608642 AGGAATTTAA
5608652 GGGTTAGGAGATTTATGGGTTAG
1 GGGTTAGG-GATTTA-GGGTTAG
5608675 GGGTTAGGGATTTAGGGTT
1 GGGTTAGGGATTTAGGGTT
5608694 TAAGGTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.26
22 6 0.32
23 8 0.42
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.36
Consensus pattern (21 bp):
GGGTTAGGGATTTAGGGTTAG
Found at i:5608682 original size:23 final size:21
Alignment explanation
Indices: 5608593--5608693 Score: 88
Period size: 22 Copynumber: 4.9 Consensus size: 21
5608583 GTATGGATTA
* * *
5608593 GGGTTTGGGATATAAGGTTTAG
1 GGGTTAGGGAT-TTAGGGTTAG
5608615 GGGTTAGGGATTTAGGAGTTAG
1 GGGTTAGGGATTTAGG-GTTAG
*
5608637 GGGTTAGGAATTTA-----A-
1 GGGTTAGGGATTTAGGGTTAG
5608652 GGGTTAGGAGATTTATGGGTTAG
1 GGGTTAGG-GATTTA-GGGTTAG
5608675 GGGTTAGGGATTTAGGGTT
1 GGGTTAGGGATTTAGGGTT
5608694 TAAGGTGTTA
Statistics
Matches: 65, Mismatches: 5, Indels: 19
0.73 0.06 0.21
Matches are distributed among these distances:
15 8 0.12
16 6 0.09
21 9 0.14
22 34 0.52
23 8 0.12
ACGTcount: A:0.23, C:0.00, G:0.43, T:0.35
Consensus pattern (21 bp):
GGGTTAGGGATTTAGGGTTAG
Found at i:5610166 original size:24 final size:24
Alignment explanation
Indices: 5610132--5610177 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
5610122 CGAAAAAGCT
5610132 ATTTTCTCCCCAAAAATTCCCCCCA
1 ATTTTCTCCCCAAAAA-TCCCCCCA
5610157 ATTTT-TCCCCAAAAATCCCCC
1 ATTTTCTCCCCAAAAATCCCCC
5610178 AAATCTAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 10 0.48
25 5 0.24
ACGTcount: A:0.28, C:0.43, G:0.00, T:0.28
Consensus pattern (24 bp):
ATTTTCTCCCCAAAAATCCCCCCA
Found at i:5610597 original size:12 final size:12
Alignment explanation
Indices: 5610580--5610604 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5610570 AGTTTGAAAC
5610580 TGTTCATAATTT
1 TGTTCATAATTT
5610592 TGTTCATAATTT
1 TGTTCATAATTT
5610604 T
1 T
5610605 CACTATCTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TGTTCATAATTT
Found at i:5610659 original size:17 final size:17
Alignment explanation
Indices: 5610632--5610671 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
5610622 TATAGAAAAC
5610632 AATAA-AATGTTATTA-G
1 AATAATAATGTTA-TACG
5610648 AATAATAATGTTATACG
1 AATAATAATGTTATACG
5610665 AATAATA
1 AATAATA
5610672 TTATGAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.35
Consensus pattern (17 bp):
AATAATAATGTTATACG
Found at i:5611008 original size:26 final size:26
Alignment explanation
Indices: 5610979--5611036 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
5610969 CTCGTTGCAT
* *
5610979 AATAATTCTTACTTTATAGCTTATCA
1 AATAATTCTTACTCTATAGCTTATAA
5611005 AATAATTCTTACTCTATAGCTTATAA
1 AATAATTCTTACTCTATAGCTTATAA
5611031 AATAAT
1 AATAAT
5611037 ATAAATCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.03, T:0.43
Consensus pattern (26 bp):
AATAATTCTTACTCTATAGCTTATAA
Found at i:5612613 original size:21 final size:21
Alignment explanation
Indices: 5612589--5612628 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
5612579 CAGATGCGGT
5612589 AGCGAAAGAAGCAGAGGCTAC
1 AGCGAAAGAAGCAGAGGCTAC
** *
5612610 AGCGAGGGAAGTAGAGGCT
1 AGCGAAAGAAGCAGAGGCT
5612629 GCAATGAGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.15, G:0.40, T:0.07
Consensus pattern (21 bp):
AGCGAAAGAAGCAGAGGCTAC
Found at i:5612829 original size:10 final size:10
Alignment explanation
Indices: 5612816--5612862 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
5612806 AATTTTATTT
5612816 TATTTATTGA
1 TATTTATTGA
5612826 TATTTATTGA
1 TATTTATTGA
5612836 TATTTATTGA
1 TATTTATTGA
5612846 TATTTATT-A
1 TATTTATTGA
5612855 TATATTAT
1 TAT-TTAT
5612863 AGATTTATTG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.11
10 32 0.89
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (10 bp):
TATTTATTGA
Found at i:5612830 original size:20 final size:21
Alignment explanation
Indices: 5612807--5612862 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
5612797 AATAATACGA
*
5612807 ATTTTATT-TTATTTATTGAT
1 ATTTTATTGATATTTATTGAT
5612827 A-TTTATTGATATTTATTGAT
1 ATTTTATTGATATTTATTGAT
5612847 A-TTTATT-ATATATTAT
1 ATTTTATTGATAT-TTAT
5612863 AGATTTATTG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 10 0.30
20 23 0.70
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTTTATTGATATTTATTGAT
Found at i:5613073 original size:43 final size:43
Alignment explanation
Indices: 5613002--5613093 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
5612992 AAAAACACCA
* * * **
5613002 CTAAAGGTCATGGTCTTTTGCGGTGTTTG-TGGGAAAAGCGCCG
1 CTAAAGATCAGGGTCTTTAGCGACGTTTGTTGGG-AAAGCGCCG
*
5613045 CTAAAGATCAGGGTCTTTAGCGACGTTTGTTTGGAAAGCGCCG
1 CTAAAGATCAGGGTCTTTAGCGACGTTTGTTGGGAAAGCGCCG
5613088 CTAAAG
1 CTAAAG
5613094 GTTGTCGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 39 0.93
44 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (43 bp):
CTAAAGATCAGGGTCTTTAGCGACGTTTGTTGGGAAAGCGCCG
Found at i:5616271 original size:44 final size:45
Alignment explanation
Indices: 5616203--5616287 Score: 129
Period size: 44 Copynumber: 1.9 Consensus size: 45
5616193 GAAGTAAAAT
* *
5616203 TTGCTATTCTCGGTCTGCCCCACTGCAA-CTGTAGGGAGATATGAC
1 TTGCTATTCTCAGTCTACCCCACTGCAACCT-TAGGGAGATATGAC
5616248 TTGCT-TTCTCAGTCTACCCCACTGCAACCTTAGGGAGATA
1 TTGCTATTCTCAGTCTACCCCACTGCAACCTTAGGGAGATA
5616288 AGACCTGATG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
44 30 0.81
45 7 0.19
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
TTGCTATTCTCAGTCTACCCCACTGCAACCTTAGGGAGATATGAC
Found at i:5616391 original size:44 final size:44
Alignment explanation
Indices: 5616309--5617159 Score: 418
Period size: 44 Copynumber: 19.6 Consensus size: 44
5616299 GATCTACCCT
* * *
5616309 ACTGCAACTTC-GGAGAGATAAGATCTAT-TATTTTAATCTGCTCC
1 ACTGCAACTTCAGG-GAGATAAGAT-TATCAACTTCAATCTGCTCC
* ** *
5616353 TCTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTGCACC
1 ACTGCAACTTCAGGGAGATAAGATTATCAACTTCAATCTGCTCC
* * * * *
5616397 ACTGCAACCTCAGGGAGATAAGATTGA-CATCTTCGATTTGCCCC
1 ACTGCAACTTCAGGGAGATAAGATT-ATCAACTTCAATCTGCTCC
** * * * **
5616441 ACTGCAACTTCAGGTG-GATAAGA-GCT-GA-TGCGATCCACTCC
1 ACTGCAACTTCAGG-GAGATAAGATTATCAACTTCAATCTGCTCC
* * * * * *
5616482 ACTACAACTTC-GGAGAGATCAGATCTAT-TATTTTAATCCGCTCC
1 ACTGCAACTTCAGG-GAGATAAGAT-TATCAACTTCAATCTGCTCC
*
5616526 ACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTATCAACTTCAATCTGCTCC
* * *
5616570 ACTGCAACCTCAGGGAGATAAGATT-TGCCATA-TTCGATCTGCCCC
1 ACTGCAACTTCAGGGAGATAAGATTAT--CA-ACTTCAATCTGCTCC
* * * * ** *
5616615 ACTGCAACTTCAGTGG-GATAAGACT-T-GA-TGCTATCCACTCT
1 ACTGCAACTTCAG-GGAGATAAGATTATCAACTTCAATCTGCTCC
* * * * * *
5616656 ACTGCAACTTAAGAGACATAAGATCTAT-TACTTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGAT-TATCAACTTCAATCTGCTCC
** *
5616700 ACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTATCAACTTCAATCTGCTCC
* * *
5616744 ACTGCAACCTCAGGGAGATAAGATT-TGCCATCTTCGATCTGC-CC
1 ACTGCAACTTCAGGGAGATAAGATTAT--CAACTTCAATCTGCTCC
* ** * * * ** *
5616788 ACTGCAACTTCAGGGGGATAAGA-CCT-GA-TGCGATCCACTCT
1 ACTGCAACTTCAGGGAGATAAGATTATCAACTTCAATCTGCTCC
* * * *
5616829 ACTGCAAC-TCCGGAGAAATAAGATCTAT-TACTTTAAT-TCGCTCC
1 ACTGCAACTTCAGG-GAGATAAGAT-TATCAACTTCAATCT-GCTCC
* ** *
5616873 ACTGTAACTTCAGGGAGATGGGATTATCAACTTCAATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGATTATCAACTTCAATCTGCTCC
* * * * *
5616917 ACTACAACCTCAGGGAGATAAGATT-TGCCATCTTCGATCTGCCCC
1 ACTGCAACTTCAGGGAGATAAGATTAT--CAACTTCAATCTGCTCC
* * * * * *
5616962 ACTGCAACTTCAGGGGGATAAGACCT-GCTTAC-TCAGTCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGA-TTATC-AACTTCAATCTGCTCC
* ** * *** ** *
5617006 GCTGCAACTTCAGGGAGATAAGA-CCT-GA-TGGGATCCACTCT
1 ACTGCAACTTCAGGGAGATAAGATTATCAACTTCAATCTGCTCC
* * *
5617047 ACTGCAACTTCAGAGAGATAAGATCTAT-TACTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGAT-TATCAACTTCAATCTGCTCC
* * *
5617091 ACTGTAACTTCAGGGAGATAGGATTATCGA-TCTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTATCAACT-TCAATCTGCTCC
* *
5617135 -CTTGCAACCTCAGGGAGGTAAGATT
1 AC-TGCAACTTCAGGGAGATAAGATT
5617160 TGCCATCTTC
Statistics
Matches: 603, Mismatches: 160, Indels: 88
0.71 0.19 0.10
Matches are distributed among these distances:
40 15 0.02
41 94 0.16
42 1 0.00
43 28 0.05
44 371 0.62
45 90 0.15
46 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTATCAACTTCAATCTGCTCC
Found at i:5616511 original size:173 final size:174
Alignment explanation
Indices: 5616264--5616988 Score: 1134
Period size: 173 Copynumber: 4.2 Consensus size: 174
5616254 TCTCAGTCTA
* *
5616264 CCCCACTGCAACCTT-AGGGAGATAAGACCTGATGCGATCTAC-CCTACTGCAACTTCGGAGAGA
1 CCCCACTGCAA-CTTCAGGGGGATAAGACCTGATGCGATCCACTCC-ACTGCAACTTCGGAGAGA
* * *
5616327 TAAGATCTATTATTTTAATCTGCTCCTCTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCT
64 TAAGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCT
* * *
5616392 GCACCACTGCAACCTCAGGGAGATAAGA-TTGACATCTTCGATTTG
129 GCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG
* * * *
5616437 CCCCACTGCAACTTCAGGTGGATAAGAGCTGATGCGATCCACTCCACTACAACTTCGGAGAGATC
1 CCCCACTGCAACTTCAGGGGGATAAGACCTGATGCGATCCACTCCACTGCAACTTCGGAGAGATA
* *
5616502 AGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTGC
66 AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTGC
*
5616567 TCCACTGCAACCTCAGGGAGATAAGATTTGCCATATTCGATCTG
131 TCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG
* * * * ** *
5616611 CCCCACTGCAACTTCAGTGGGATAAGACTTGATGCTATCCACTCTACTGCAACTTAAGAGACATA
1 CCCCACTGCAACTTCAGGGGGATAAGACCTGATGCGATCCACTCCACTGCAACTTCGGAGAGATA
*
5616676 AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTGC
66 AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTGC
5616741 TCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG
131 TCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG
* * *
5616785 -CCCACTGCAACTTCAGGGGGATAAGACCTGATGCGATCCACTCTACTGCAACTCCGGAGAAATA
1 CCCCACTGCAACTTCAGGGGGATAAGACCTGATGCGATCCACTCCACTGCAACTTCGGAGAGATA
* * *
5616849 AGATCTATTACTTTAATTCGCTCCACTGTAACTTCAGGGAGATGGGATTATCAACTTCAATCTAC
66 AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTGC
*
5616914 TCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG
131 TCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG
5616958 CCCCACTGCAACTTCAGGGGGATAAGACCTG
1 CCCCACTGCAACTTCAGGGGGATAAGACCTG
5616989 CTTACTCAGT
Statistics
Matches: 508, Mismatches: 40, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
172 3 0.01
173 300 0.59
174 205 0.40
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (174 bp):
CCCCACTGCAACTTCAGGGGGATAAGACCTGATGCGATCCACTCCACTGCAACTTCGGAGAGATA
AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTGC
TCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG
Found at i:5616899 original size:347 final size:346
Alignment explanation
Indices: 5616264--5616988 Score: 1139
Period size: 347 Copynumber: 2.1 Consensus size: 346
5616254 TCTCAGTCTA
* ** *
5616264 CCCCACTGCAACCTT-AGGGAGATAAGACCTGATGCGATCTACCCTACTGCAACTTCGGAGAGAT
1 CCCCACTGCAA-CTTCAGGG-GATAAGACCTGATGCGATCCACCCTACTGCAACTTAAGAGACAT
* * * *
5616328 AAGATCTATTATTTTAATCTGCTCCTCTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTG
64 AAGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTG
* *
5616393 CACCACTGCAACCTCAGGGAGATAAGATTGACATCTTCGATTTGCCCCACTGCAACTTCAGGTGG
129 CACCACTGCAACCTCAGGGAGATAAGATTGACATCTTCGATCTGCCCCACTGCAACTTCAGGGGG
* * * * *
5616458 ATAAGAGCTGATGCGATCCACTCCACTACAACTTCGGAGAGATCAGATCTATTATTTTAATCCGC
194 ATAAGACCTGATGCGATCCACTCCACTACAACTCCGGAGAAATAAGATCTATTACTTTAATCCGC
* *
5616523 TCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTGCTCCACTGCAACCTCAGGGAGA
259 TCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAGA
5616588 TAAGATTTGCCATATTCGATCTG
324 TAAGATTTGCCATATTCGATCTG
* * *
5616611 CCCCACTGCAACTTCAGTGGGATAAGACTTGATGCTATCCACTCTACTGCAACTTAAGAGACATA
1 CCCCACTGCAACTTCAG-GGGATAAGACCTGATGCGATCCACCCTACTGCAACTTAAGAGACATA
5616676 AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTGC
65 AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTGC
* *
5616741 TCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG-CCCACTGCAACTTCAGGGGG
130 ACCACTGCAACCTCAGGGAGATAAGA-TTGACATCTTCGATCTGCCCCACTGCAACTTCAGGGGG
* * *
5616805 ATAAGACCTGATGCGATCCACTCTACTGCAACTCCGGAGAAATAAGATCTATTACTTTAATTCGC
194 ATAAGACCTGATGCGATCCACTCCACTACAACTCCGGAGAAATAAGATCTATTACTTTAATCCGC
* *
5616870 TCCACTGTAACTTCAGGGAGATGGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAGA
259 TCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAGA
*
5616935 TAAGATTTGCCATCTTCGATCTG
324 TAAGATTTGCCATATTCGATCTG
5616958 CCCCACTGCAACTTCAGGGGGATAAGACCTG
1 CCCCACTGCAACTTCA-GGGGATAAGACCTG
5616989 CTTACTCAGT
Statistics
Matches: 345, Mismatches: 29, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
346 3 0.01
347 324 0.94
348 18 0.05
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (346 bp):
CCCCACTGCAACTTCAGGGGATAAGACCTGATGCGATCCACCCTACTGCAACTTAAGAGACATAA
GATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTGCA
CCACTGCAACCTCAGGGAGATAAGATTGACATCTTCGATCTGCCCCACTGCAACTTCAGGGGGAT
AAGACCTGATGCGATCCACTCCACTACAACTCCGGAGAAATAAGATCTATTACTTTAATCCGCTC
CACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAGATA
AGATTTGCCATATTCGATCTG
Found at i:5617053 original size:347 final size:348
Alignment explanation
Indices: 5616264--5617115 Score: 1088
Period size: 347 Copynumber: 2.5 Consensus size: 348
5616254 TCTCAGTCTA
* * * * * ** *
5616264 CCCCACTGCAACCTT-AGGGAGATAAGACCTGATGCGATCTACCCTACTGCAACTTCGGAGAGAT
1 CCCCACTGCAA-CTTCAGGGGGATAAGACCTGATACTATCCACTCTACTGCAACTTAAGAGACAT
* * ** ** *
5616328 AAGATCTATTATTTTAATCTGCTCCTCTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTG
65 AAGATCTATGACTGGAATCCACTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTG
* * *
5616393 CACCACTGCAACCTCAGGGAGATAAGA-TTGACATCTTCGATTTGCCCCACTGCAACTTCAGGTG
130 CTCCACTGCAACCTCAGGGAGATAAGATTTGACATCTTCGATCTGCCCCACTGCAACTTCAGGGG
* * * * *
5616457 GATAAGAGCTGATGCGATCCACTCCACTACAACTTCGGAGAGATCAGATCTATTATTTTAATCCG
195 GATAAGACCTGATGCGATCCACTCCACTACAACTCCGGAGAAATAAGATCTATTACTTTAATCCG
* *
5616522 CTCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTGCTCCACTGCAACCTCAGGGAG
260 CTCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAG
5616587 ATAAGATTTGCCATATTCGATCTG
325 ATAAGATTTGCCATATTCGATCTG
* * *
5616611 CCCCACTGCAACTTCAGTGGGATAAGACTTGATGCTATCCACTCTACTGCAACTTAAGAGACATA
1 CCCCACTGCAACTTCAGGGGGATAAGACCTGATACTATCCACTCTACTGCAACTTAAGAGACATA
* ** * *
5616676 AGATCTATTACTTTAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTGC
66 AGATCTATGACTGGAATCCACTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTGC
*
5616741 TCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTG-CCCACTGCAACTTCAGGGGG
131 TCCACTGCAACCTCAGGGAGATAAGATTTGACATCTTCGATCTGCCCCACTGCAACTTCAGGGGG
* * *
5616805 ATAAGACCTGATGCGATCCACTCTACTGCAACTCCGGAGAAATAAGATCTATTACTTTAATTCGC
196 ATAAGACCTGATGCGATCCACTCCACTACAACTCCGGAGAAATAAGATCTATTACTTTAATCCGC
* *
5616870 TCCACTGTAACTTCAGGGAGATGGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAGA
261 TCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAGA
*
5616935 TAAGATTTGCCATCTTCGATCTG
326 TAAGATTTGCCATATTCGATCTG
* ** * * * *
5616958 CCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCAGTCTGCTCTGCTGCAACTTCAGGGAG
1 CCCCACTGCAACTTCAGGGGGATAAGACCTG-ATACT-A-TCCACTCTACTGCAACTTAAGAGAC
* * * * ** * *
5617023 ATAAGA-C-CTGA-TGGGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTAT-TACTTTAAT
63 ATAAGATCTATGACTGGAATCCACTCCACTGCAACTTCAGGGAGATGGGAT-TATCAACTTCAAT
* * *
5617084 CTGCTCCACTGTAACTTCAGGGAGATAGGATT
127 CTGCTCCACTGCAACCTCAGGGAGATAAGATT
5617116 ATCGATCTCA
Statistics
Matches: 443, Mismatches: 56, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
346 3 0.01
347 390 0.88
348 23 0.05
349 2 0.00
350 25 0.06
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (348 bp):
CCCCACTGCAACTTCAGGGGGATAAGACCTGATACTATCCACTCTACTGCAACTTAAGAGACATA
AGATCTATGACTGGAATCCACTCCACTGCAACTTCAGGGAGATGGGATTATCAACTTCAATCTGC
TCCACTGCAACCTCAGGGAGATAAGATTTGACATCTTCGATCTGCCCCACTGCAACTTCAGGGGG
ATAAGACCTGATGCGATCCACTCCACTACAACTCCGGAGAAATAAGATCTATTACTTTAATCCGC
TCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTACTCCACTACAACCTCAGGGAGA
TAAGATTTGCCATATTCGATCTG
Found at i:5617301 original size:217 final size:218
Alignment explanation
Indices: 5616781--5617333 Score: 830
Period size: 218 Copynumber: 2.5 Consensus size: 218
5616771 CCATCTTCGA
* * * *
5616781 TCTGC-CCACTGCAACTTCAGGGGGATAAGACCTGATGCGATCCACTCTACTGCAACTCCGGAGA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGA-A
*
5616845 A-ATAAGATCTATTACTTTAAT-TCGCTCCACTGTAACTTCAGGGAGATGGGATTATCAACTTCA
65 AGATAAGATCTATTACTTTAATCT-GCTCCACTGTAACTTCAGGGAGATAGGATTATCAACTTCA
* *
5616908 ATCTACTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGCAACTTC
129 ATCTACTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATATGCCCCACTACAACTTC
*
5616973 AGGGGGATAAGACCTGCTTACTCAG
194 AGCGGGATAAGACCTGCTTACTCAG
* * *
5616998 TCTGCTCTGCTGCAACTTCAGGGAGATAAGACCTGATGGGATCCACTCTACTGCAACTTCAGAGA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAAA
*
5617063 GATAAGATCTATTACTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATTATCGA-TCTCAA
66 GATAAGATCTATTACTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATTATCAACT-TCAA
* * *
5617127 TCTGCTCC-CTTGCAACCTCAGGGAGGTAAGATTTGCCATCTTCGATATGCCCCA-TACAACTTC
130 TCTACTCCAC-TACAACCTCAGGGAGATAAGATTTGCCATCTTCGATATGCCCCACTACAACTTC
*
5617190 AGCGGGATAAGACCTGCTTTCTCAG
194 AGCGGGATAAGACCTGCTTACTCAG
* *
5617215 TCTGCTCCGCTGCAACTTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTTAGAAA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAAA
* * * *
5617280 GATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTA
66 GATAAGATCTATTACTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATTA
5617334 GTGGTTTCAC
Statistics
Matches: 306, Mismatches: 25, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
217 149 0.49
218 156 0.51
219 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (218 bp):
TCTGCTCCGCTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAAA
GATAAGATCTATTACTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATTATCAACTTCAAT
CTACTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATATGCCCCACTACAACTTCAG
CGGGATAAGACCTGCTTACTCAG
Found at i:5617310 original size:391 final size:389
Alignment explanation
Indices: 5616439--5617333 Score: 1015
Period size: 391 Copynumber: 2.3 Consensus size: 389
5616429 TCGATTTGCC
* * * * * *
5616439 CCACTGCAACTTCAGGTG-GATAAGAGCTGATGCGATCCACTCCACTACAACTTCGGAGAGATCA
1 CCACTGCAACTTCAGGAGAGATAAGACCTGATGCGATCTACTCCACTGCAACTTCAGAGAGATAA
*
5616503 GATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTGCT
66 GATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTGCC
** *
5616568 CCACTGCAACCTCAGGGAGATAAGATTTGCCATATTCGATCTGCCCCACTGCAACTTCAGTGGGA
131 CCACTGCAACCTCAGGGAGATAAGACCTGCCATACTCGATCTGCCCCACTGCAACTTCAGTGGGA
* *
5616633 TAAGACTTGATGCTATCCACTCTACTGCAACTTAAGAGACATAAGATCTATTACTTTAATCCGCT
196 TAAGACCTGATGCGATCCACTCTACTGCAACTTAAGAGACATAAGATCTATTACTTTAATCCGCT
*
5616698 CCACTGCAACTTCAGGGAGATGGGATTATCAACATCAATCTGCTCCACTGCAACCTCAGGGAGAT
261 CCACTGCAACTTCAGGGAGATAGGATTATCAACATCAATCTGCTCCACTGCAACCTCAGGGAGAT
* * * *
5616763 AAGATTTGCCATCTTCGATCTGCCCACTGCAACTTCAGGGGGATAAGACCTGATGCGATCCACT
326 AAGATTTGCCATCTTCGATATGCCCACTACAACTTCAGCGGGATAAGACCTGATGCCATCCACT
* * * * * * * * *
5616827 CTACTGCAAC-TCCGGAGAAATAAGATCT-ATTACTTTAAT-TCGCTCCACTGTAACTTCAGGGA
1 CCACTGCAACTTCAGGAGAGATAAGACCTGA-TGC---GATCT-ACTCCACTGCAACTTCAGAGA
** * * * ** * * * *
5616889 GATGGGAT-TATCAACTTCAATCTACTCCACTACAACCTCAGGGAGATAAGATT-TGCCATCTTC
61 GATAAGATCTAT-TATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAT--CAACTTC
* * * * * **
5616952 GATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTG-CTTACTC-AGTCTGCTCTGCTGCAACT
123 AATCTGCCCCACTGCAACCTCAGGGAGATAAGACCTGCCATACTCGA-TCTGCCCCACTGCAACT
* * *
5617015 TCAG-GGAGATAAGACCTGATGGGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACT
187 TCAGTGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTAAGAGACATAAGATCTATTACT
* * *
5617079 TTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATTATCGATC-TCAATCTGCTCC-CTTGCAA
251 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATC-AACATCAATCTGCTCCAC-TGCAA
*
5617142 CCTCAGGGAGGTAAGATTTGCCATCTTCGATATGCCC-CATACAACTTCAGCGGGATAAGACCTG
314 CCTCAGGGAGATAAGATTTGCCATCTTCGATATGCCCAC-TACAACTTCAGCGGGATAAGACCTG
* * **
5617206 CTTTCTCAGTCTGCT
378 -ATGC-CA-TCCACT
* * * *
5617221 CCGCTGCAACTTCAGG-GAGATAAGACCTGATGCGATCTACTCTACTGCAACTTTAGAAAGATAA
1 CCACTGCAACTTCAGGAGAGATAAGACCTGATGCGATCTACTCCACTGCAACTTCAGAGAGATAA
*
5617285 GATCTATTATTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTA
66 GATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTA
5617334 GTGGTTTCAC
Statistics
Matches: 408, Mismatches: 77, Indels: 40
0.78 0.15 0.08
Matches are distributed among these distances:
387 6 0.01
388 19 0.05
390 9 0.02
391 299 0.73
392 45 0.11
393 1 0.00
394 24 0.06
395 5 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (389 bp):
CCACTGCAACTTCAGGAGAGATAAGACCTGATGCGATCTACTCCACTGCAACTTCAGAGAGATAA
GATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAACTTCAATCTGCC
CCACTGCAACCTCAGGGAGATAAGACCTGCCATACTCGATCTGCCCCACTGCAACTTCAGTGGGA
TAAGACCTGATGCGATCCACTCTACTGCAACTTAAGAGACATAAGATCTATTACTTTAATCCGCT
CCACTGCAACTTCAGGGAGATAGGATTATCAACATCAATCTGCTCCACTGCAACCTCAGGGAGAT
AAGATTTGCCATCTTCGATATGCCCACTACAACTTCAGCGGGATAAGACCTGATGCCATCCACT
Found at i:5618601 original size:7 final size:7
Alignment explanation
Indices: 5618586--5618636 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
5618576 GGCCTCTTCA
*
5618586 TTTCTTT
1 TTTCATT
5618593 TTTCATT
1 TTTCATT
*
5618600 TTTCGTT
1 TTTCATT
5618607 TTTCA-T
1 TTTCATT
5618613 TTTCATT
1 TTTCATT
*
5618620 TTTTATT
1 TTTCATT
*
5618627 TTTTATT
1 TTTCATT
5618634 TTT
1 TTT
5618637 TTCTGACTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
6 6 0.15
7 33 0.85
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (7 bp):
TTTCATT
Found at i:5618628 original size:20 final size:20
Alignment explanation
Indices: 5618592--5618635 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
5618582 TTCATTTCTT
*
5618592 TTTTCATTTTTCGTTTTTCA
1 TTTTCATTTTTCATTTTTCA
* *
5618612 TTTTCATTTTTTATTTTTTA
1 TTTTCATTTTTCATTTTTCA
5618632 TTTT
1 TTTT
5618636 TTTCTGACTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTCATTTTTCATTTTTCA
Found at i:5619543 original size:26 final size:25
Alignment explanation
Indices: 5619514--5619562 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
5619504 TTTCTCATAT
5619514 TTTTCATTTTCACTTTTTGACTTTGA
1 TTTTCATTTTCACTTTTT-ACTTTGA
* **
5619540 TTTTGATTTTTTCTTTTTACTTT
1 TTTTCATTTTCACTTTTTACTTT
5619563 TGCTTTTGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.12, C:0.12, G:0.06, T:0.69
Consensus pattern (25 bp):
TTTTCATTTTCACTTTTTACTTTGA
Found at i:5619546 original size:6 final size:6
Alignment explanation
Indices: 5619528--5619593 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
5619518 CATTTTCACT
* ** * * * *
5619528 TTTTGA CTTTGA TTTTGA TTTTTTC TTTTTA CTTTTGC TTTTGC TTTTGC
1 TTTTGA TTTTGA TTTTGA -TTTTGA TTTTGA -TTTTGA TTTTGA TTTTGA
5619578 TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTT
5619594 TTTCTTCCCC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
6 42 0.84
7 8 0.16
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:5625700 original size:43 final size:43
Alignment explanation
Indices: 5625653--5625978 Score: 388
Period size: 43 Copynumber: 7.6 Consensus size: 43
5625643 GGGTTATTAC
* * *
5625653 AAAGGTTATTGTCTTTAGCGGCGTTTCTCGGATAAGCGCCGCT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGTCGGATAAGCGCCGCT
* * *
5625696 AAAGGTCATGGTCTTTAGCGGCGTTTGTTGGAAAAGCGCTGCT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGTCGGATAAGCGCCGCT
* *
5625739 AAAGGTCATTGTCTTTAGCGGCGTTTGTCGGATAAGTGCCGCT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGTCGGATAAGCGCCGCT
*
5625782 AAAGGTCATGGTC-TTATCCGGCGTTTGTCGGATAAGCGCCGCT
1 AAAGGTCATGGTCTTTA-GCGGCGTTTGTCGGATAAGCGCCGCT
* * * *
5625825 AAAGGTCTTGGTCTTTAGCGGTGTTTGTCGGAAAAGTGCCGCT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGTCGGATAAGCGCCGCT
* * * *
5625868 AAAGGTCATAGCCTTTAGCGGCGTTTGTGGGA-AAGCGCCACT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGTCGGATAAGCGCCGCT
** ** * * *
5625910 AAAGACCATGACCTTTAGCGGCGTTTGTGCTGA-AAGAGCTGCT
1 AAAGGTCATGGTCTTTAGCGGCGTTTGT-CGGATAAGCGCCGCT
*
5625953 AAAGGTCTTGGTCTTTAGCGGCGTTT
1 AAAGGTCATGGTCTTTAGCGGCGTTT
5625979 ATTTCTAAAA
Statistics
Matches: 240, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
42 35 0.15
43 202 0.84
44 3 0.01
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (43 bp):
AAAGGTCATGGTCTTTAGCGGCGTTTGTCGGATAAGCGCCGCT
Found at i:5637881 original size:15 final size:16
Alignment explanation
Indices: 5637861--5637893 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
5637851 TATATATTAA
*
5637861 TTGTATGTTAA-ATAT
1 TTGTATATTAATATAT
5637876 TTGTATATTAATATAT
1 TTGTATATTAATATAT
5637892 TT
1 TT
5637894 AATTTAACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (16 bp):
TTGTATATTAATATAT
Found at i:5638984 original size:15 final size:16
Alignment explanation
Indices: 5638964--5638996 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
5638954 TATATATTAA
*
5638964 TTGTATGTTAA-ATAT
1 TTGTATATTAATATAT
5638979 TTGTATATTAATATAT
1 TTGTATATTAATATAT
5638995 TT
1 TT
5638997 AATTTAACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (16 bp):
TTGTATATTAATATAT
Found at i:5639227 original size:166 final size:175
Alignment explanation
Indices: 5639047--5639370 Score: 495
Period size: 179 Copynumber: 1.9 Consensus size: 175
5639037 AGTTCATCAC
* * *
5639047 CCAAAATGTGGCTTGGATTCGAGTCGTGTTACATTTAGGATTTACTCTCCTCTTAT-ATT-TC-A
1 CCAAAATGTGGCTTGGATTCAAGTCGTGTTACATTAAGGATTTACTCTCCTCTTATAATTCACAA
* * *
5639109 T-TA-A-AT-TA-A-ATATATATTTAATTTAATGAAAGTTGCAATTTTAAATTATTAATATTAAT
66 TATATATATATATATATATATATTTAATTTAACGAAAGTTGCAATTTTAAATTATTAATAGTAAG
5639168 TGTATGTTATTTAACAAAAGTTGTACTGGCTTGATGATCAGGGAG
131 TGTATGTTATTTAACAAAAGTTGTACTGGCTTGATGATCAGGGAG
5639213 CCAAAATGTGGCTTGGATTCAAGTCGTGTTACATTAAGGATTTACTCTCCTCTTATAATTCACCA
1 CCAAAATGTGGCTTGGATTCAAGTCGTGTTACATTAAGGATTTACTCTCCTCTTATAATT---CA
5639278 CAAATATATATATATATATATATATATTTAATTTAACGAAAGTTGCAATTTTAAATTATTAATAG
63 C-AATATATATATATATATATATATATTTAATTTAACGAAAGTTGCAATTTTAAATTATTAATAG
5639343 TAAGTGTATGTTATTTAACAAAAGTTGT
127 TAAGTGTATGTTATTTAACAAAAGTTGT
5639371 GTAAGGCGAT
Statistics
Matches: 139, Mismatches: 6, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
166 54 0.39
167 3 0.02
171 1 0.01
173 2 0.01
174 2 0.01
175 1 0.01
176 2 0.01
177 2 0.01
178 1 0.01
179 71 0.51
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (175 bp):
CCAAAATGTGGCTTGGATTCAAGTCGTGTTACATTAAGGATTTACTCTCCTCTTATAATTCACAA
TATATATATATATATATATATATTTAATTTAACGAAAGTTGCAATTTTAAATTATTAATAGTAAG
TGTATGTTATTTAACAAAAGTTGTACTGGCTTGATGATCAGGGAG
Found at i:5641037 original size:19 final size:18
Alignment explanation
Indices: 5641015--5641058 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
5641005 TTGAATTAGA
5641015 AATTAGTTGTT-GAATGTT
1 AATTAGTTGTTCG-ATGTT
*
5641033 GAATTAATTGTTCGATGTT
1 -AATTAGTTGTTCGATGTT
5641052 AATTAGT
1 AATTAGT
5641059 ATGAATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 6 0.27
19 15 0.68
20 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (18 bp):
AATTAGTTGTTCGATGTT
Found at i:5643484 original size:25 final size:25
Alignment explanation
Indices: 5643453--5643522 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
5643443 CGTTCTGACC
5643453 CACAGCTCGTGTGAGCATACCGATT
1 CACAGCTCGTGTGAGCATACCGATT
* * *
5643478 TACAGCTTGTGTGAGCATATCGATT
1 CACAGCTCGTGTGAGCATACCGATT
5643503 CACAGCTCGTGTGAGCATAC
1 CACAGCTCGTGTGAGCATAC
5643523 ATGTACAAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
CACAGCTCGTGTGAGCATACCGATT
Found at i:5651044 original size:25 final size:25
Alignment explanation
Indices: 5650980--5651121 Score: 158
Period size: 25 Copynumber: 5.6 Consensus size: 25
5650970 CAACCCATAG
* * * *
5650980 CTCGTTTGAGCAGACCCATTTTCACAG
1 CTCGTGTGAGCATACCGA-TTT-ACAA
*
5651007 CTCGTGTGAGCATACCAATTTACAA
1 CTCGTGTGAGCATACCGATTTACAA
*
5651032 CTCGTGTGGGCATACCGATTTACAA
1 CTCGTGTGAGCATACCGATTTACAA
* * *
5651057 CTCATGTGAGGATACCGATTTACAG
1 CTCGTGTGAGCATACCGATTTACAA
* * *
5651082 CTCATGTGAGCATACCGATTTATAG
1 CTCGTGTGAGCATACCGATTTACAA
5651107 CTCGTGTGAGCATAC
1 CTCGTGTGAGCATAC
5651122 ATGTCCAGGA
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
25 84 0.82
26 3 0.03
27 15 0.15
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (25 bp):
CTCGTGTGAGCATACCGATTTACAA
Found at i:5655961 original size:16 final size:16
Alignment explanation
Indices: 5655937--5655985 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
5655927 TTCGCTGTAT
5655937 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
* *
5655953 TGGATTAGAGGTGTAA
1 TGGAATAGAGGCGTAA
5655969 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
5655985 T
1 T
5655986 AGCAAATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:5656015 original size:45 final size:44
Alignment explanation
Indices: 5655964--5656054 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 44
5655954 GGATTAGAGG
5655964 TGTAATGGAATAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAA
* *
5656009 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
5656053 TG
1 TG
5656055 GAATAGAGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.42
45 24 0.56
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
Found at i:5656235 original size:16 final size:16
Alignment explanation
Indices: 5656198--5656239 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
5656188 TTAATCATAT
*
5656198 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
5656214 TT-AAATATATTATAA
1 TTAAAATATATTATAA
5656229 TTAAAATATAT
1 TTAAAATATAT
5656240 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:5656246 original size:14 final size:15
Alignment explanation
Indices: 5656207--5656248 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
5656197 TTTAAACATA
*
5656207 ATTATTATTAAATAT
1 ATTATAATTAAATAT
5656222 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
5656236 A-TATAATTTAATA
1 ATTATAATTAAATA
5656249 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:5656460 original size:24 final size:25
Alignment explanation
Indices: 5656414--5656461 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
5656404 TATGAATTTG
5656414 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
5656440 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
5656462 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:5656465 original size:92 final size:92
Alignment explanation
Indices: 5656369--5656597 Score: 236
Period size: 92 Copynumber: 2.5 Consensus size: 92
5656359 TGATTTAATA
* * *
5656369 AAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTA
*
5656431 ATTATTACATATAATTTAATAATTAATATT
64 A-TATTAAATATAATTTAATAATTAATATT
* * * * *
5656461 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
* *
5656526 ATTAAATATAATTTAAT-AGTGATA-T
66 ATTAAATATAATTTAATAATTAATATT
* * *
5656551 ATAATTTCATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 A-AATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
5656598 CTAAAATCAA
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
90 2 0.02
91 27 0.23
92 81 0.68
93 9 0.08
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (92 bp):
AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAATATT
Found at i:5660477 original size:25 final size:24
Alignment explanation
Indices: 5660421--5660574 Score: 157
Period size: 25 Copynumber: 6.2 Consensus size: 24
5660411 AGACACACCA
*
5660421 CAGCTCGTATGAGCTTACCGATTT
1 CAGCTCATATGAGCTTACCGATTT
*
5660445 CAGCTCATGA-GAGGTTACCGATTCT
1 CAGCTCAT-ATGAGCTTACCGATT-T
5660470 CAGCTCATATGAGCTTACCGATTAT
1 CAGCTCATATGAGCTTACCGATT-T
* *
5660495 TAGCTCATATGAGCTTACCGTTTGT
1 CAGCTCATATGAGCTTACCGATT-T
* *
5660520 TAGCTCGTATGAGCTTACCGATTGT
1 CAGCTCATATGAGCTTACCGATT-T
* ** *
5660545 AAGCTTGTATGAGCTTACCAATTT
1 CAGCTCATATGAGCTTACCGATTT
5660569 CCAGCT
1 -CAGCT
5660575 TGTGAGAGCA
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
24 21 0.19
25 92 0.81
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (24 bp):
CAGCTCATATGAGCTTACCGATTT
Found at i:5660556 original size:75 final size:74
Alignment explanation
Indices: 5660422--5660563 Score: 178
Period size: 75 Copynumber: 1.9 Consensus size: 74
5660412 GACACACCAC
* * *
5660422 AGCTCGTATGAGCTTACCGATTTCAGCTCATGAGAGGTTACCGATTCTCAGCTCATATGAGCTTA
1 AGCTCATATGAGCTTACCGATTTCAGCTCATGAGAGCTTACCGATTCTAAGCTCATATGAGCTTA
5660487 CCGATTATT
66 CCGATTATT
* * * * **
5660496 AGCTCATATGAGCTTACCGTTTGTTAGCTCGT-ATGAGCTTACCGATTGTAAGCTTGTATGAGCT
1 AGCTCATATGAGCTTACCGATT-TCAGCTCATGA-GAGCTTACCGATTCTAAGCTCATATGAGCT
5660560 TACC
64 TACC
5660564 AATTTCCAGC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
74 21 0.37
75 36 0.63
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (74 bp):
AGCTCATATGAGCTTACCGATTTCAGCTCATGAGAGCTTACCGATTCTAAGCTCATATGAGCTTA
CCGATTATT
Found at i:5664773 original size:19 final size:20
Alignment explanation
Indices: 5664749--5664790 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
5664739 AGGGCATTGA
**
5664749 CTTCTTAGGTTTG-TTCCTT
1 CTTCTTAGGCCTGCTTCCTT
5664768 CTTCTTAGGCCTGCTTCCTT
1 CTTCTTAGGCCTGCTTCCTT
5664788 CTT
1 CTT
5664791 TGTATGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.05, C:0.29, G:0.14, T:0.52
Consensus pattern (20 bp):
CTTCTTAGGCCTGCTTCCTT
Found at i:5667948 original size:42 final size:42
Alignment explanation
Indices: 5667864--5668040 Score: 250
Period size: 42 Copynumber: 4.2 Consensus size: 42
5667854 ACCGACACTT
* *
5667864 AGCCTGCTAGACATATAA-TCTGA-AATGTTTCACTGGCATTA
1 AGCCTGCTAGACGTA-AAGTCTGATATTGTTTCACTGGCATTA
*
5667905 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGAATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
* * *
5667947 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
* *
5667989 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGTCAATA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
*
5668031 AGCTTGCTAG
1 AGCCTGCTAG
5668041 GCGTTAAGCC
Statistics
Matches: 121, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
40 2 0.02
41 19 0.16
42 100 0.83
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (42 bp):
AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
Found at i:5671188 original size:26 final size:26
Alignment explanation
Indices: 5671152--5671217 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
5671142 TAAATTTTTC
5671152 AAGTATGTTTTAATCATTTCTTCCAT
1 AAGTATGTTTTAATCATTTCTTCCAT
* *
5671178 AAGTATGTTTTTATCATTTCTTTCAT
1 AAGTATGTTTTAATCATTTCTTCCAT
*
5671204 AAGTTTGTTTTAAT
1 AAGTATGTTTTAAT
5671218 AAATGAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.55
Consensus pattern (26 bp):
AAGTATGTTTTAATCATTTCTTCCAT
Found at i:5683627 original size:3 final size:3
Alignment explanation
Indices: 5683619--5683649 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
5683609 CATAAAGAAT
5683619 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
5683650 ATGAAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:5685189 original size:42 final size:42
Alignment explanation
Indices: 5685083--5685189 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 42
5685073 GGTAAGGCAT
* ** * *
5685083 ATGGGTGTGTGTCTAGACCGTGTGAGTCACCTAGACAAGGAC
1 ATGGGTGTGTGTCCAGGTCGTGTGAGCCACCGAGACAAGGAC
* **
5685125 ATAGGCATGTGTCCA-GTCCGTGTGAGCCACACGAG-CAAGGAC
1 ATGGGTGTGTGTCCAGGT-CGTGTGAGCCAC-CGAGACAAGGAC
5685167 ATGGGTGTGTGTCCAGGTCGTGT
1 ATGGGTGTGTGTCCAGGTCGTGT
5685190 CACATATAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
42 46 0.90
43 5 0.10
ACGTcount: A:0.21, C:0.21, G:0.35, T:0.23
Consensus pattern (42 bp):
ATGGGTGTGTGTCCAGGTCGTGTGAGCCACCGAGACAAGGAC
Found at i:5691878 original size:42 final size:42
Alignment explanation
Indices: 5691804--5691915 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 42
5691794 ATACGACTAG
* * ** * *
5691804 GGACATGGGCGTGTGCCCAAGCTGTGTCAGTCATAC-GAAAAA
1 GGACATGGGCGTGTGTCCAGGCCATGTGAGTCACACTG-AAAA
**
5691846 GGACATGGGCGTGTGTCCAGGCCATGTGAGTCACACTGGCAA
1 GGACATGGGCGTGTGTCCAGGCCATGTGAGTCACACTGAAAA
* *
5691888 GGACATAGGCGTGTGTCCAGGTCATGTG
1 GGACATGGGCGTGTGTCCAGGCCATGTG
5691916 GCATATAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 58 0.98
43 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.35, T:0.21
Consensus pattern (42 bp):
GGACATGGGCGTGTGTCCAGGCCATGTGAGTCACACTGAAAA
Found at i:5705671 original size:31 final size:30
Alignment explanation
Indices: 5705630--5705688 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 30
5705620 AGAATGAAAA
*
5705630 AAAAACAAAGTTTAAAACCT-AAGAGAAAGG
1 AAAAACAAAGTCTAAAA-CTAAAGAGAAAGG
5705660 AAAAACTAAAGTCTAAAACTAAAGAGAAA
1 AAAAAC-AAAGTCTAAAACTAAAGAGAAA
5705689 ATTATACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.63, C:0.10, G:0.14, T:0.14
Consensus pattern (30 bp):
AAAAACAAAGTCTAAAACTAAAGAGAAAGG
Found at i:5706172 original size:20 final size:21
Alignment explanation
Indices: 5706147--5706189 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
5706137 CAACTTACAC
*
5706147 ATTTATTAAAAT-TAACTAAA
1 ATTTATCAAAATATAACTAAA
*
5706167 ATTTATCAAAATATAATTAAA
1 ATTTATCAAAATATAACTAAA
5706188 AT
1 AT
5706190 GCAACAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTTATCAAAATATAACTAAA
Found at i:5706834 original size:22 final size:22
Alignment explanation
Indices: 5706803--5706847 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
5706793 CTCTCCACAT
5706803 AGGAGACACAACATAATATAAC
1 AGGAGACACAACATAATATAAC
*
5706825 AGGAGTCACAACATAATATAAC
1 AGGAGACACAACATAATATAAC
5706847 A
1 A
5706848 ATCATGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.18, G:0.13, T:0.16
Consensus pattern (22 bp):
AGGAGACACAACATAATATAAC
Found at i:5724902 original size:15 final size:16
Alignment explanation
Indices: 5724882--5724925 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
5724872 GAAGAAAATA
5724882 TTGAGACAA-AAGCTG
1 TTGAGACAAGAAGCTG
*
5724897 TTGAGA-AAGAATCTG
1 TTGAGACAAGAAGCTG
5724912 TTGAGGACAAGAAG
1 TTGA-GACAAGAAG
5724926 TAGCTGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 2 0.08
15 15 0.62
16 2 0.08
17 5 0.21
ACGTcount: A:0.41, C:0.09, G:0.30, T:0.20
Consensus pattern (16 bp):
TTGAGACAAGAAGCTG
Found at i:5736044 original size:31 final size:32
Alignment explanation
Indices: 5736009--5736079 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 32
5735999 TAAAAGGGTT
*
5736009 TATTAATTTCATGTAAATATCTTTTATA-TTA
1 TATTAATTTAATGTAAATATCTTTTATACTTA
* *
5736040 TATTAATTTAATGTAAATATTTTTTGTACTTA
1 TATTAATTTAATGTAAATATCTTTTATACTTA
5736072 TCATTAAT
1 T-ATTAAT
5736080 CACTATTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 25 0.71
32 4 0.11
33 6 0.17
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (32 bp):
TATTAATTTAATGTAAATATCTTTTATACTTA
Found at i:5740417 original size:81 final size:81
Alignment explanation
Indices: 5740327--5740651 Score: 641
Period size: 81 Copynumber: 4.0 Consensus size: 81
5740317 GATGAGTATG
5740327 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
1 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
5740392 CACTTTTATTAAATTA
66 CACTTTTATTAAATTA
5740408 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
1 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
5740473 CACTTTTATTAAATTA
66 CACTTTTATTAAATTA
5740489 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
1 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
5740554 CACTTTTATTAAATTA
66 CACTTTTATTAAATTA
5740570 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
1 TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
*
5740635 CACTTTTAATAAATTA
66 CACTTTTATTAAATTA
5740651 T
1 T
5740652 TTTTTATTAT
Statistics
Matches: 243, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 243 1.00
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (81 bp):
TGTCATAATCTAGTTTTTTAATATAAATATTTTCATTATATTATAACTAATGGCAATATTTATTT
CACTTTTATTAAATTA
Found at i:5744638 original size:20 final size:18
Alignment explanation
Indices: 5744595--5744631 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
5744585 AAAAAACTAC
5744595 AATTTTATGAATAAATAT
1 AATTTTATGAATAAATAT
5744613 AATTTTATGAATAAATAT
1 AATTTTATGAATAAATAT
5744631 A
1 A
5744632 TTATTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
AATTTTATGAATAAATAT
Found at i:5754119 original size:50 final size:50
Alignment explanation
Indices: 5754008--5754255 Score: 221
Period size: 50 Copynumber: 4.8 Consensus size: 50
5753998 ATTTGGGTAA
* * * * *
5754008 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGTGATTATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA-C----CGA-GATG
* * *
5754064 AGAGGTCCCATGTAAGACCATGTTTGGGCCATGGCGTTGGCACCGCGATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
* * *
5754114 AGAGGTCTCATATAAGACCATGTCTGGGACATGG-AGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCA-TTGGCACCGAGATG
* * * * *
5754164 AGAGGTCTCC-CGTAAGACCATGTATGGGACATGACATGGGCACCGATATG
1 AGAGGTC-CCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
** * * *
5754214 AGAACTCCCATGCAAGACCATATTTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA
5754256 GTACAAGAAA
Statistics
Matches: 158, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
49 2 0.01
50 115 0.73
51 3 0.02
55 1 0.01
56 37 0.23
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
Found at i:5756095 original size:25 final size:22
Alignment explanation
Indices: 5756054--5756117 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 22
5756044 AGCTTGGGGC
*
5756054 AGAAA-AAATAAAAAGGAAAGAGA
1 AGAAAGAAAGAAAAAGG-AAGA-A
5756077 AGAAAGAAAGAAAGAAGGAAGAA
1 AGAAAGAAAGAAA-AAGGAAGAA
5756100 AGAAAATGAAAGAAAAAG
1 AG-AAA-GAAAGAAAAAG
5756118 AATGAAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
23 8 0.22
24 16 0.44
25 12 0.33
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (22 bp):
AGAAAGAAAGAAAAAGGAAGAA
Found at i:5756098 original size:15 final size:15
Alignment explanation
Indices: 5756074--5756114 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
5756064 AAAAGGAAAG
5756074 AGAAGAAAGAAAGAA
1 AGAAGAAAGAAAGAA
*
5756089 AGAAGGAAGAAAGAA
1 AGAAGAAAGAAAGAA
*
5756104 A-ATGAAAGAAA
1 AGAAGAAAGAAA
5756115 AAGAATGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (15 bp):
AGAAGAAAGAAAGAA
Found at i:5756126 original size:10 final size:10
Alignment explanation
Indices: 5756063--5756126 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
5756053 CAGAAAAAAT
5756063 AAAAAGGAAAG
1 AAAAA-GAAAG
*
5756074 -AGAAGAAAG
1 AAAAAGAAAG
5756083 --AAAGAAAG
1 AAAAAGAAAG
*
5756091 AAGGAAGAAAG
1 AA-AAAGAAAG
*
5756102 AAAATGAAAG
1 AAAAAGAAAG
*
5756112 AAAAAGAATG
1 AAAAAGAAAG
5756122 AAAAA
1 AAAAA
5756127 TTTCCATAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
8 7 0.16
9 5 0.12
10 22 0.51
11 9 0.21
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:5758182 original size:40 final size:40
Alignment explanation
Indices: 5758116--5758217 Score: 161
Period size: 40 Copynumber: 2.5 Consensus size: 40
5758106 ACCAGTGTTC
*
5758116 CATTTCATATATCTATT-TTCATATAACCGATTCATATAAA
1 CATTTCATATATC-ATTCTTCACATAACCGATTCATATAAA
*
5758156 CATTTCATATATCATTCTTCACATAACCGATTCATATAAC
1 CATTTCATATATCATTCTTCACATAACCGATTCATATAAA
*
5758196 CATTTCATAAATCATTCTTCAC
1 CATTTCATATATCATTCTTCAC
5758218 CCGATGAACC
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 3 0.05
40 55 0.95
ACGTcount: A:0.35, C:0.23, G:0.02, T:0.40
Consensus pattern (40 bp):
CATTTCATATATCATTCTTCACATAACCGATTCATATAAA
Found at i:5758202 original size:13 final size:13
Alignment explanation
Indices: 5758115--5758204 Score: 69
Period size: 13 Copynumber: 6.8 Consensus size: 13
5758105 AACCAGTGTT
*
5758115 CCATTTCATATAT
1 CCATTTCATATAA
*
5758128 CTATTTTCATATAA
1 CCA-TTTCATATAA
5758142 CCGA-TTCATATAA
1 CC-ATTTCATATAA
*
5758155 ACATTTCATAT-A
1 CCATTTCATATAA
* *
5758167 TCATTCTTCACATAA
1 CCA-T-TTCATATAA
5758182 CCGA-TTCATATAA
1 CC-ATTTCATATAA
5758195 CCATTTCATA
1 CCATTTCATA
5758205 AATCATTCTT
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
12 5 0.08
13 36 0.59
14 16 0.26
15 3 0.05
16 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.02, T:0.40
Consensus pattern (13 bp):
CCATTTCATATAA
Found at i:5760335 original size:17 final size:17
Alignment explanation
Indices: 5760313--5760346 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
5760303 GTAGTCAATC
5760313 GGAAGCTTGTTCGAGTT
1 GGAAGCTTGTTCGAGTT
*
5760330 GGAAGCTTGTTGGAGTT
1 GGAAGCTTGTTCGAGTT
5760347 ATATCACACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.38, T:0.35
Consensus pattern (17 bp):
GGAAGCTTGTTCGAGTT
Found at i:5760542 original size:71 final size:71
Alignment explanation
Indices: 5760462--5760603 Score: 266
Period size: 71 Copynumber: 2.0 Consensus size: 71
5760452 CCAATGTGTT
* *
5760462 TTGACTTGAGAATTTGGTATTTTGAATGTTTGAAATGGTTGAATACATTTTTATGTGTATGTGGC
1 TTGACTTGAGAATTTGGTATTTTGAATGTTTGAAATGGTTGAATACATTGTTATGTGTATATGGC
5760527 CTTATA
66 CTTATA
5760533 TTGACTTGAGAATTTGGTATTTTGAATGTTTGAAATGGTTGAATACATTGTTATGTGTATATGGC
1 TTGACTTGAGAATTTGGTATTTTGAATGTTTGAAATGGTTGAATACATTGTTATGTGTATATGGC
5760598 CTTATA
66 CTTATA
5760604 ATGGTTGAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.46
Consensus pattern (71 bp):
TTGACTTGAGAATTTGGTATTTTGAATGTTTGAAATGGTTGAATACATTGTTATGTGTATATGGC
CTTATA
Found at i:5762776 original size:13 final size:13
Alignment explanation
Indices: 5762758--5762789 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
5762748 TTGACTCGTA
5762758 AATATTAAATAAT
1 AATATTAAATAAT
5762771 AATATTAAATAAT
1 AATATTAAATAAT
5762784 AATATT
1 AATATT
5762790 TACGGGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
AATATTAAATAAT
Found at i:5771666 original size:40 final size:39
Alignment explanation
Indices: 5771605--5771738 Score: 141
Period size: 40 Copynumber: 3.5 Consensus size: 39
5771595 TTTATCAGTC
* * * *
5771605 TATCTGACTAGTGCAGAGCACACCATTATATCTGTCAGTT
1 TATCTGACTAGCGCTGGGCACA-CATTATATCTGTCAATT
* *
5771645 TATCCGACTAGCGCTGGGCACA-ACT-T-TC-GTCAATT
1 TATCTGACTAGCGCTGGGCACACATTATATCTGTCAATT
* * *
5771680 TATCTGACTAGTGCTGGGCACAACATTATATTTTTCAATT
1 TATCTGACTAGCGCTGGGCAC-ACATTATATCTGTCAATT
5771720 TATCTGACTAGCGCTGGGC
1 TATCTGACTAGCGCTGGGC
5771739 GCAAATCTTC
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
35 25 0.32
36 3 0.04
37 3 0.04
38 3 0.04
39 1 0.01
40 42 0.55
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (39 bp):
TATCTGACTAGCGCTGGGCACACATTATATCTGTCAATT
Found at i:5771689 original size:35 final size:36
Alignment explanation
Indices: 5771638--5771772 Score: 119
Period size: 40 Copynumber: 3.7 Consensus size: 36
5771628 CATTATATCT
* *
5771638 GTCAGTTTATCCGACTAGCGCTGGGCACAACT-TTC
1 GTCAATTTATCTGACTAGCGCTGGGCACAACTATTC
* *
5771673 GTCAATTTATCTGACTAGTGCTGGGCACAACATTATATTT
1 GTCAATTTATCTGACTAGCGCTGGGCACAAC----TATTC
* * * *
5771713 TTCAATTTATCTGACTAGCGCTGGGCGCAAATCTTC
1 GTCAATTTATCTGACTAGCGCTGGGCACAACTATTC
* * * *
5771749 ATCAGTTTATTTGACTAGTGCTGG
1 GTCAATTTATCTGACTAGCGCTGG
5771773 TCGCAAATCT
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
35 28 0.35
36 23 0.28
39 1 0.01
40 29 0.36
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (36 bp):
GTCAATTTATCTGACTAGCGCTGGGCACAACTATTC
Found at i:5771722 original size:75 final size:76
Alignment explanation
Indices: 5771605--5771772 Score: 221
Period size: 75 Copynumber: 2.2 Consensus size: 76
5771595 TTTATCAGTC
* * * * *
5771605 TATCTGACTAGTGCAGAGCACACCATTATATCTGTCAGTTTATCCGACTAGCGCTGGGCACAACT
1 TATCTGACTAGTGCTGGGCACAACATTATATCTGTCAATTTATCCGACTAGCGCTGGGCACAAAT
*
5771670 -TTCGTCAATT
66 CTTCATCAATT
* * * *
5771680 TATCTGACTAGTGCTGGGCACAACATTATATTTTTCAATTTATCTGACTAGCGCTGGGCGCAAAT
1 TATCTGACTAGTGCTGGGCACAACATTATATCTGTCAATTTATCCGACTAGCGCTGGGCACAAAT
*
5771745 CTTCATCAGTT
66 CTTCATCAATT
*
5771756 TATTTGACTAGTGCTGG
1 TATCTGACTAGTGCTGG
5771773 TCGCAAATCT
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
75 56 0.70
76 24 0.30
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (76 bp):
TATCTGACTAGTGCTGGGCACAACATTATATCTGTCAATTTATCCGACTAGCGCTGGGCACAAAT
CTTCATCAATT
Found at i:5771792 original size:36 final size:36
Alignment explanation
Indices: 5771639--5771805 Score: 131
Period size: 36 Copynumber: 4.6 Consensus size: 36
5771629 ATTATATCTG
* * * * *
5771639 TCAGTTTATCCGACTAGCGCTGGGCACAACT-TTCG
1 TCAGTTTATCTGACTAGTGCTGGGCGCAAATCTTCA
* * * **
5771674 TCAATTTATCTGACTAGTGCTGGGCACAACATTATATTTT
1 TCAGTTTATCTGACTAGTGCTGGGCGC-A-A--ATCTTCA
* *
5771714 TCAATTTATCTGACTAGCGCTGGGCGCAAATCTTCA
1 TCAGTTTATCTGACTAGTGCTGGGCGCAAATCTTCA
* * **
5771750 TCAGTTTATTTGACTAGTGCTGGTCGCAAATCTTTG
1 TCAGTTTATCTGACTAGTGCTGGGCGCAAATCTTCA
*
5771786 TTAGTTTA-CTGACTAGTGCT
1 TCAGTTTATCTGACTAGTGCT
5771806 AGGCACACTC
Statistics
Matches: 108, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
35 35 0.32
36 42 0.39
37 1 0.01
38 1 0.01
39 2 0.02
40 27 0.25
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (36 bp):
TCAGTTTATCTGACTAGTGCTGGGCGCAAATCTTCA
Found at i:5775656 original size:14 final size:15
Alignment explanation
Indices: 5775637--5775676 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
5775627 ACTGATAAGA
*
5775637 TCTTGCGA-AGATGT
1 TCTTGCGATAGAAGT
5775651 TCTTGC-ATAGAAGT
1 TCTTGCGATAGAAGT
5775665 TCTTGCG-TAGAA
1 TCTTGCGATAGAA
5775677 ACTTCACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 1 0.04
14 22 0.96
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (15 bp):
TCTTGCGATAGAAGT
Found at i:5787163 original size:27 final size:27
Alignment explanation
Indices: 5787125--5787178 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
5787115 ATACTAATAA
5787125 AATATAATATCTTAATATTTTGATACT
1 AATATAATATCTTAATATTTTGATACT
5787152 AATATAATATCTTAATATTTTGATACT
1 AATATAATATCTTAATATTTTGATACT
5787179 TATCTTCTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (27 bp):
AATATAATATCTTAATATTTTGATACT
Found at i:5790083 original size:28 final size:28
Alignment explanation
Indices: 5790051--5790136 Score: 84
Period size: 28 Copynumber: 3.1 Consensus size: 28
5790041 CTTTAATCCC
* *
5790051 TAACGGATATTCCACCCAAGATAGTCTT
1 TAACGGACATTCCACTCAAGATAGTCTT
* *
5790079 TAAC-GAGCATTCCACTTAAGATAGTCCT
1 TAACGGA-CATTCCACTCAAGATAGTCTT
* * * *
5790107 TGATGGACATTCCATTGAAGATAGTCTT
1 TAACGGACATTCCACTCAAGATAGTCTT
5790135 TA
1 TA
5790137 GCGAACTTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
27 2 0.04
28 42 0.91
29 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (28 bp):
TAACGGACATTCCACTCAAGATAGTCTT
Found at i:5791290 original size:53 final size:53
Alignment explanation
Indices: 5791224--5791327 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 53
5791214 AGCGCTAAAT
* * *
5791224 ACCATATCGTGTAAGACCATAACTGGTGGGTTATGGCATCACATGAAAAAAAG
1 ACCATATCATGTAAGACCATAACCGGTGGGTTATGACATCACATGAAAAAAAG
*** * *
5791277 ACCATATCATGTAAGATTGTAACCGGTGGGTTATGACATCATATGGAAAAA
1 ACCATATCATGTAAGACCATAACCGGTGGGTTATGACATCACATGAAAAAA
5791328 TCTAAATTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (53 bp):
ACCATATCATGTAAGACCATAACCGGTGGGTTATGACATCACATGAAAAAAAG
Found at i:5791537 original size:28 final size:28
Alignment explanation
Indices: 5791505--5791568 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
5791495 TACTTAATGG
5791505 AAAGGACA-CATTTGTAGCAACCTCTATT
1 AAAGGA-AGCATTTGTAGCAACCTCTATT
* * * *
5791533 AAAGGAAGCATTTGTGGCAATCTTTGTT
1 AAAGGAAGCATTTGTAGCAACCTCTATT
5791561 AAAGGAAG
1 AAAGGAAG
5791569 GCTTTGTGGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (28 bp):
AAAGGAAGCATTTGTAGCAACCTCTATT
Found at i:5792380 original size:18 final size:19
Alignment explanation
Indices: 5792359--5792396 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
5792349 TTAGAGGTAG
5792359 AATAAGT-GGAGTA-ATGTA
1 AATAAGTAGGA-TATATGTA
5792377 AATAAGTAGGATATATGTA
1 AATAAGTAGGATATATGTA
5792396 A
1 A
5792397 TTGTAAATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
AATAAGTAGGATATATGTA
Found at i:5793074 original size:33 final size:34
Alignment explanation
Indices: 5793023--5793132 Score: 87
Period size: 35 Copynumber: 3.2 Consensus size: 34
5793013 CCAACTTCAG
* * *
5793023 AGAGTCAGGAAACCATTTTCATGGTGTCGCTCC-
1 AGAGCCAGCAAACAATTTTCATGGTGTCGCTCCA
* * * ** *
5793056 AGAGCCTGCAAATAATTTTTATATTATCGCTCCA
1 AGAGCCAGCAAACAATTTTCATGGTGTCGCTCCA
* * *
5793090 TAGAGCCAGTAAACCATTTTCATGGTGTCGCTCCGT
1 -AGAGCCAGCAAACAATTTTCATGGTGTCGCTCC-A
5793126 AGAGCCA
1 AGAGCCA
5793133 ATAGATTATT
Statistics
Matches: 56, Mismatches: 18, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
33 24 0.43
35 32 0.57
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (34 bp):
AGAGCCAGCAAACAATTTTCATGGTGTCGCTCCA
Found at i:5795902 original size:3 final size:3
Alignment explanation
Indices: 5795894--5795919 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
5795884 TTCTAGATGA
5795894 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
5795920 TAGTTTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:5800443 original size:36 final size:36
Alignment explanation
Indices: 5800396--5800464 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
5800386 ACAACAAAAA
5800396 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
5800432 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5800465 AAGACAATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.96, C:0.04, G:0.00, T:0.00
Consensus pattern (36 bp):
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
Found at i:5800444 original size:38 final size:38
Alignment explanation
Indices: 5800394--5800466 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
5800384 CCACAACAAA
5800394 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
5800432 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5800467 GACAATTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.96, C:0.04, G:0.00, T:0.00
Consensus pattern (38 bp):
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
Found at i:5800445 original size:37 final size:37
Alignment explanation
Indices: 5800395--5800465 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
5800385 CACAACAAAA
5800395 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
5800432 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5800466 AGACAATTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.96, C:0.04, G:0.00, T:0.00
Consensus pattern (37 bp):
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
Found at i:5800479 original size:1 final size:1
Alignment explanation
Indices: 5800391--5800466 Score: 125
Period size: 1 Copynumber: 76.0 Consensus size: 1
5800381 ATACCACAAC
***
5800391 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5800456 AAAAAAAAAAA
1 AAAAAAAAAAA
5800467 GACAATTCAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.96, C:0.04, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Done.