Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 18 of 135
Found at i:7302387 original size:22 final size:22
Alignment explanation
Indices: 7302362--7302405 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7302352 AAATTTTAAA
7302362 ATTTCAATCCTGACATAAATGT
1 ATTTCAATCCTGACATAAATGT
* * *
7302384 ATTTTAGTCTTGACATAAATGT
1 ATTTCAATCCTGACATAAATGT
7302406 CTATCATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (22 bp):
ATTTCAATCCTGACATAAATGT
Found at i:7303435 original size:30 final size:30
Alignment explanation
Indices: 7303401--7303469 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
7303391 TTTATACAGA
*
7303401 TTTTAAATGATTAAATTAGAATGTTATTAT
1 TTTTAAATGATCAAATTAGAATGTTATTAT
* * * * *
7303431 TTTTAGAGGATCAAATTATAATTTTATTTT
1 TTTTAAATGATCAAATTAGAATGTTATTAT
7303461 TTATTAAAT
1 TT-TTAAAT
7303470 TAAAATATTG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.52
Consensus pattern (30 bp):
TTTTAAATGATCAAATTAGAATGTTATTAT
Found at i:7304379 original size:2 final size:2
Alignment explanation
Indices: 7304372--7304407 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7304362 TTAAAACTTC
7304372 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7304408 TTAAACTACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7305242 original size:16 final size:16
Alignment explanation
Indices: 7305221--7305252 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7305211 ACAAGATTAG
7305221 ATCGATGAATCAGATT
1 ATCGATGAATCAGATT
*
7305237 ATCGATGAATCGGATT
1 ATCGATGAATCAGATT
7305253 GAGAAGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (16 bp):
ATCGATGAATCAGATT
Found at i:7306722 original size:24 final size:24
Alignment explanation
Indices: 7306695--7306741 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7306685 AAAAGTCCAA
7306695 ACCCATTAAAATTTAAAATTCAAT
1 ACCCATTAAAATTTAAAATTCAAT
* * *
7306719 ACCCGTTAATATTTAGAATTCAA
1 ACCCATTAAAATTTAAAATTCAA
7306742 ATTGATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (24 bp):
ACCCATTAAAATTTAAAATTCAAT
Found at i:7309356 original size:27 final size:27
Alignment explanation
Indices: 7309324--7309381 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7309314 CCCATTTTTT
* * **
7309324 AATAAAACACCAAAAATTTATTTTAAA
1 AATAAAAAACAAAAAAAGTATTTTAAA
*
7309351 AATAAAAAATAAAAAAAGTATTTTAAA
1 AATAAAAAACAAAAAAAGTATTTTAAA
7309378 AATA
1 AATA
7309382 TTTTAAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (27 bp):
AATAAAAAACAAAAAAAGTATTTTAAA
Found at i:7312610 original size:22 final size:22
Alignment explanation
Indices: 7312585--7312628 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7312575 AAATTTTAAA
7312585 ATTTCAATCCTGACATAAATGT
1 ATTTCAATCCTGACATAAATGT
* * *
7312607 ATTTTAGTCTTGACATAAATGT
1 ATTTCAATCCTGACATAAATGT
7312629 CTATCATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (22 bp):
ATTTCAATCCTGACATAAATGT
Found at i:7313658 original size:30 final size:30
Alignment explanation
Indices: 7313624--7313692 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
7313614 TTTATACAGA
*
7313624 TTTTAAATGATTAAATTAGAATGTTATTAT
1 TTTTAAATGATCAAATTAGAATGTTATTAT
* * * * *
7313654 TTTTAGAGGATCAAATTATAATTTTATTTT
1 TTTTAAATGATCAAATTAGAATGTTATTAT
7313684 TTATTAAAT
1 TT-TTAAAT
7313693 TAAAATATTG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.52
Consensus pattern (30 bp):
TTTTAAATGATCAAATTAGAATGTTATTAT
Found at i:7314602 original size:2 final size:2
Alignment explanation
Indices: 7314595--7314630 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7314585 TTAAAACTTC
7314595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7314631 TTAAACTACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7315465 original size:16 final size:16
Alignment explanation
Indices: 7315444--7315475 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7315434 ACAAGATTAG
7315444 ATCGATGAATCAGATT
1 ATCGATGAATCAGATT
*
7315460 ATCGATGAATCGGATT
1 ATCGATGAATCAGATT
7315476 GAGAAGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (16 bp):
ATCGATGAATCAGATT
Found at i:7316813 original size:31 final size:31
Alignment explanation
Indices: 7316773--7316839 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
7316763 ATTAGTTTAT
7316773 TCGA-TTGATTTTCAATTTTCATATTTTAAA
1 TCGATTTGATTTTCAATTTTCATATTTTAAA
7316803 TCGATTTGATTTTCAATTTTCATATTTTAAA
1 TCGATTTGATTTTCAATTTTCATATTTTAAA
7316834 TCGATT
1 TCGATT
7316840 CAATCATAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.54
Consensus pattern (31 bp):
TCGATTTGATTTTCAATTTTCATATTTTAAA
Found at i:7316976 original size:24 final size:24
Alignment explanation
Indices: 7316949--7316995 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7316939 AAAAGTCCAA
7316949 ACCCATTAAAATTTAAAATTCAAT
1 ACCCATTAAAATTTAAAATTCAAT
* * *
7316973 ACCCGTTAATATTTAGAATTCAA
1 ACCCATTAAAATTTAAAATTCAA
7316996 ATTGATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (24 bp):
ACCCATTAAAATTTAAAATTCAAT
Found at i:7321825 original size:11 final size:11
Alignment explanation
Indices: 7321811--7321839 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
7321801 CTTTCATGCA
7321811 TTCATCAAATT
1 TTCATCAAATT
7321822 TTCAT-AAATT
1 TTCATCAAATT
7321832 TTCATCAA
1 TTCATCAA
7321840 TTCATAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (11 bp):
TTCATCAAATT
Found at i:7325083 original size:128 final size:128
Alignment explanation
Indices: 7324852--7325110 Score: 491
Period size: 128 Copynumber: 2.0 Consensus size: 128
7324842 AAATATATGG
7324852 AAAAACTTTGAAAAAAAATTAACGGAGTTGTATCCAACACTCACAGTCGAGTTTAAGTTACATGG
1 AAAAACTTTGAAAAAAAATTAACGGAGTTGTATCCAACACTCACAGTCGAGTTTAAGTTACATGG
*
7324917 AGGAAATGTATTCAGAGAGAATTATTTCTATTTAAATGTGTTTCCAGTGTGTGTAGCATATAT
66 AGGAAATGTATTAAGAGAGAATTATTTCTATTTAAATGTGTTTCCAGTGTGTGTAGCATATAT
*
7324980 AAAAACTTTGAAAAAAATTTAACGGAGTTGTATCCAACACTCACAGTCGAGTTTAAGTTACATGG
1 AAAAACTTTGAAAAAAAATTAACGGAGTTGTATCCAACACTCACAGTCGAGTTTAAGTTACATGG
*
7325045 AGGAAATGTATTAAGAGAGAATTATTTCTATTTGAATGTGTTTCCAGTGTGTGTAGCATATAT
66 AGGAAATGTATTAAGAGAGAATTATTTCTATTTAAATGTGTTTCCAGTGTGTGTAGCATATAT
7325108 AAA
1 AAA
7325111 TGCTAATGTT
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 128 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (128 bp):
AAAAACTTTGAAAAAAAATTAACGGAGTTGTATCCAACACTCACAGTCGAGTTTAAGTTACATGG
AGGAAATGTATTAAGAGAGAATTATTTCTATTTAAATGTGTTTCCAGTGTGTGTAGCATATAT
Found at i:7329757 original size:49 final size:49
Alignment explanation
Indices: 7329685--7329783 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
7329675 CCCTTAACCC
7329685 GAAATGATGAGGCTTTCGAGGGATGATTGTTCTGTGACTGGAACATGTT
1 GAAATGATGAGGCTTTCGAGGGATGATTGTTCTGTGACTGGAACATGTT
*
7329734 GAAATGATGAGGCTTTCGAGGGATGATTGTTCTGTGACTGTAACATGTT
1 GAAATGATGAGGCTTTCGAGGGATGATTGTTCTGTGACTGGAACATGTT
7329783 G
1 G
7329784 TCTAGAACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.24, C:0.10, G:0.32, T:0.33
Consensus pattern (49 bp):
GAAATGATGAGGCTTTCGAGGGATGATTGTTCTGTGACTGGAACATGTT
Found at i:7331925 original size:3 final size:3
Alignment explanation
Indices: 7331919--7331944 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7331909 CTCCCTGCTA
7331919 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
7331945 TTCCCCTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:7332320 original size:3 final size:3
Alignment explanation
Indices: 7332312--7332363 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
7332302 GCAAATATCC
7332312 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7332360 TTA T
1 TTA T
7332364 GAATGTTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7333432 original size:21 final size:21
Alignment explanation
Indices: 7333408--7333454 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
7333398 AATCATTGAG
7333408 ACTGCAT-TATCCTTTGATCAT
1 ACTGCATGTA-CCTTTGATCAT
*
7333429 ACTG-GTGTACCTTTGATCAT
1 ACTGCATGTACCTTTGATCAT
7333449 ACTGCA
1 ACTGCA
7333455 CCTAATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (21 bp):
ACTGCATGTACCTTTGATCAT
Found at i:7336023 original size:31 final size:31
Alignment explanation
Indices: 7335988--7336056 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
7335978 TGATTAATTC
7335988 AAAAATTTT-AGGAGAGCTGAATTAAAA-TTTT
1 AAAAATTTTGA-GAGAGCT-AATTAAAATTTTT
* * *
7336019 AAAAAATTTGAGTGATCTAATTAAAATTTTT
1 AAAAATTTTGAGAGAGCTAATTAAAATTTTT
7336050 AAAAATT
1 AAAAATT
7336057 AAAAATTTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 8 0.25
31 23 0.72
32 1 0.03
ACGTcount: A:0.48, C:0.03, G:0.12, T:0.38
Consensus pattern (31 bp):
AAAAATTTTGAGAGAGCTAATTAAAATTTTT
Found at i:7345379 original size:16 final size:16
Alignment explanation
Indices: 7345358--7345393 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7345348 CCTTATTGTA
* *
7345358 TATTCTTATAAAAAAT
1 TATTCTTAAAAAAAAG
7345374 TATTCTTAAAAAAAAG
1 TATTCTTAAAAAAAAG
7345390 TATT
1 TATT
7345394 TGCAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (16 bp):
TATTCTTAAAAAAAAG
Found at i:7347434 original size:14 final size:14
Alignment explanation
Indices: 7347417--7347447 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7347407 CAAAGTATAT
7347417 TAAAAATTAAAGTA
1 TAAAAATTAAAGTA
*
7347431 TAAAGATTAAAGTA
1 TAAAAATTAAAGTA
7347445 TAA
1 TAA
7347448 TGAAGAGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (14 bp):
TAAAAATTAAAGTA
Found at i:7347911 original size:22 final size:20
Alignment explanation
Indices: 7347886--7347934 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 20
7347876 CTCCAATAAT
*
7347886 TTGTATTTTAATAAGATAAATA
1 TTGTATTGTAA-AAGATAAA-A
7347908 TTGTAATTGTAAAAGATAAAA
1 TTGT-ATTGTAAAAGATAAAA
7347929 TTGTAT
1 TTGTAT
7347935 AGTGTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 5 0.20
22 12 0.48
23 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (20 bp):
TTGTATTGTAAAAGATAAAA
Found at i:7352199 original size:29 final size:28
Alignment explanation
Indices: 7352166--7352220 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
7352156 TAGAAGAAAA
7352166 AAATAATTTAAAAATCACAATATTTTTCT
1 AAATAATTTAAAAAT-ACAATATTTTTCT
* **
7352195 AAATATTTTTTAAATACAATATTTTT
1 AAATAATTTAAAAATACAATATTTTT
7352221 AAAAGGTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (28 bp):
AAATAATTTAAAAATACAATATTTTTCT
Found at i:7352295 original size:41 final size:41
Alignment explanation
Indices: 7352244--7352328 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
7352234 TTTCTTTATT
*
7352244 TCTTTATCATCAAAATTCTTTTTCTAAGTGTGATATTCTTA
1 TCTTTATCATCAAAATTCTTTTTCCAAGTGTGATATTCTTA
7352285 TCTTTATCATCAAAATTCTTTTTCCAAGTGTGATATTCTTA
1 TCTTTATCATCAAAATTCTTTTTCCAAGTGTGATATTCTTA
7352326 TCT
1 TCT
7352329 CAAAACAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.26, C:0.16, G:0.07, T:0.51
Consensus pattern (41 bp):
TCTTTATCATCAAAATTCTTTTTCCAAGTGTGATATTCTTA
Found at i:7355577 original size:27 final size:27
Alignment explanation
Indices: 7355539--7355615 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
7355529 TAGTATTGGC
7355539 GCCTATCTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
7355566 GCCTACCTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
7355593 GCC-ATTCTGAGAGGCGCCAATGG
1 GCCTA-TCTGGGAGGCGCCAATGG
7355616 GCCGGGTCGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.17, C:0.25, G:0.39, T:0.19
Consensus pattern (27 bp):
GCCTATCTGGGAGGCGCCAATGGTGGT
Found at i:7355857 original size:19 final size:19
Alignment explanation
Indices: 7355835--7355872 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7355825 AATTTAATTT
*
7355835 ATTAGTAATAAATTACTAA
1 ATTACTAATAAATTACTAA
*
7355854 ATTACTAATAAGTTACTAA
1 ATTACTAATAAATTACTAA
7355873 TAAATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (19 bp):
ATTACTAATAAATTACTAA
Found at i:7356023 original size:22 final size:22
Alignment explanation
Indices: 7355968--7356054 Score: 129
Period size: 22 Copynumber: 3.7 Consensus size: 22
7355958 ATATACCGAC
7355968 ATTACAATATTCATACAAAATTATAA
1 ATTACAATATTCATAC-AAA--A-AA
7355994 TATTACAATATTCATACAAAAAA
1 -ATTACAATATTCATACAAAAAA
7356017 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAA
7356039 ATTACAATATTCATAC
1 ATTACAATATTCATAC
7356055 TAAATATAGA
Statistics
Matches: 60, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
22 38 0.63
23 2 0.03
24 1 0.02
26 3 0.05
27 16 0.27
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (22 bp):
ATTACAATATTCATACAAAAAA
Found at i:7359097 original size:9 final size:9
Alignment explanation
Indices: 7359085--7359112 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7359075 TTTTATTACA
7359085 ACAATTAAT
1 ACAATTAAT
7359094 ACAATTAAT
1 ACAATTAAT
7359103 ACAATTAAT
1 ACAATTAAT
7359112 A
1 A
7359113 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:7359144 original size:68 final size:66
Alignment explanation
Indices: 7359071--7359196 Score: 225
Period size: 68 Copynumber: 1.9 Consensus size: 66
7359061 AAATATAATA
7359071 TAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA
1 TAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGATAAATTTACTAATCAAA
7359136 TGT
64 TGT
*
7359139 TAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAATTTTACTAA
1 TAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAAATTTACTAA
7359197 CAATTAATTT
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
66 27 0.47
67 1 0.02
68 29 0.51
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (66 bp):
TAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAAATTTACTAATCAAATG
T
Found at i:7359206 original size:16 final size:16
Alignment explanation
Indices: 7359185--7359226 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7359175 AATAATTTGA
*
7359185 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
7359201 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
7359217 TAGTTTTAAT
1 TAATTTTAAT
7359227 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:7359210 original size:22 final size:23
Alignment explanation
Indices: 7359200--7359255 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
7359190 TTACTAACAA
* * *
7359200 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
7359222 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
7359245 TTAATTTTAAT
1 TTAATTTTAAT
7359256 TTTAATTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:7359215 original size:59 final size:66
Alignment explanation
Indices: 7359071--7359218 Score: 202
Period size: 68 Copynumber: 2.3 Consensus size: 66
7359061 AAATATAATA
7359071 TAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA
1 TAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA
7359136 TGT
65 -GT
*
7359139 TAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGATAATTTTACTAA-C-AA
1 TAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA
7359200 -T
65 GT
*
7359201 TA-ATTTTA-ATAACAATTA
1 TAGATTTTATACAACAATTA
7359219 GTTTTAATTT
Statistics
Matches: 78, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
59 9 0.12
61 6 0.08
62 3 0.04
64 2 0.03
65 1 0.01
66 27 0.35
67 1 0.01
68 29 0.37
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (66 bp):
TAGATTTTATACAACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAG
T
Found at i:7371286 original size:23 final size:23
Alignment explanation
Indices: 7371260--7371304 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7371250 TTATACTCAG
* *
7371260 TATTTGTATTTTTTATTTAATAT
1 TATTTGTAATTTTTAATTAATAT
*
7371283 TATTTTTAATTTTTAATTAATA
1 TATTTGTAATTTTTAATTAATA
7371305 AATATTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
TATTTGTAATTTTTAATTAATAT
Found at i:7371314 original size:14 final size:14
Alignment explanation
Indices: 7371295--7371351 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
7371285 TTTTTAATTT
*
7371295 TTAATTAATAAATA
1 TTAATTAAAAAATA
7371309 TTAATTAAAAAATA
1 TTAATTAAAAAATA
** * *
7371323 AAAAATAAAACAACA
1 TTAATTAAAA-AATA
*
7371338 TTAAATAAAAAATA
1 TTAATTAAAAAATA
7371352 CAAATATTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 23 0.68
15 11 0.32
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (14 bp):
TTAATTAAAAAATA
Found at i:7371460 original size:19 final size:19
Alignment explanation
Indices: 7371422--7371460 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7371412 TAATCTAACC
*
7371422 AAAAAACCAATGCATTAAA
1 AAAAAACCAATGCATAAAA
* *
7371441 AAAAAACCATTGTATAAAA
1 AAAAAACCAATGCATAAAA
7371460 A
1 A
7371461 GTGTGTTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAAAACCAATGCATAAAA
Found at i:7372027 original size:14 final size:14
Alignment explanation
Indices: 7372008--7372051 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
7371998 TTAATTTATG
7372008 AAAATTTTATTTTT
1 AAAATTTTATTTTT
*
7372022 AAAATTTTAATTTT
1 AAAATTTTATTTTT
*
7372036 AATTAATTATATTTTT
1 AA--AATTTTATTTTT
7372052 TAATTTTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 15 0.60
16 10 0.40
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AAAATTTTATTTTT
Found at i:7372034 original size:15 final size:15
Alignment explanation
Indices: 7371996--7372035 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
7371986 TATGCTATTT
7371996 TTTTAATTTATGAAAA
1 TTTTAATTT-TGAAAA
*
7372012 TTTT-ATTTTTAAAA
1 TTTTAATTTTGAAAA
7372026 TTTTAATTTT
1 TTTTAATTTT
7372036 AATTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 9 0.41
15 9 0.41
16 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TTTTAATTTTGAAAA
Found at i:7374260 original size:15 final size:16
Alignment explanation
Indices: 7374228--7374261 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7374218 AGTTCATCTC
*
7374228 TGCTTTATTTTTTCAT
1 TGCTATATTTTTTCAT
7374244 TGCTATATTTTTT-AT
1 TGCTATATTTTTTCAT
7374259 TGC
1 TGC
7374262 ACTAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.15, C:0.12, G:0.09, T:0.65
Consensus pattern (16 bp):
TGCTATATTTTTTCAT
Found at i:7387322 original size:65 final size:65
Alignment explanation
Indices: 7387249--7387518 Score: 540
Period size: 65 Copynumber: 4.2 Consensus size: 65
7387239 ATCTTTAACC
7387249 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
1 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
7387314 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
1 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
7387379 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
1 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
7387444 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
1 GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
7387509 GTTAACCGAA
1 GTTAACCGAA
7387519 TTAACCAAAA
Statistics
Matches: 205, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 205 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (65 bp):
GTTAACCGAACCGAAATTTTTTCAAAAAAATTAACCGACCGAAATTTTTTCGGTTAATTCGGTCG
Found at i:7387330 original size:37 final size:36
Alignment explanation
Indices: 7387279--7387517 Score: 148
Period size: 28 Copynumber: 7.2 Consensus size: 36
7387269 TTCAAAAAAA
7387279 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
1 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
*****
7387315 TTAACCGAACCGAAATTTTTTC----AA----AAAAA
1 TTAACCG-ACCGAAATTTTTTCGGTTAATTCGGTCGG
7387344 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
1 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
*****
7387380 TTAACCGAACCGAAATTTTTTC----AA----AAAAA
1 TTAACCG-ACCGAAATTTTTTCGGTTAATTCGGTCGG
7387409 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
1 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
*****
7387445 TTAACCGAACCGAAATTTTTTC----AA----AAAAA
1 TTAACCG-ACCGAAATTTTTTCGGTTAATTCGGTCGG
7387474 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
1 TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
7387510 TTAACCGA
1 TTAACCGA
7387518 ATTAACCAAA
Statistics
Matches: 146, Mismatches: 30, Indels: 54
0.63 0.13 0.23
Matches are distributed among these distances:
28 42 0.29
29 21 0.14
32 6 0.04
33 6 0.04
36 29 0.20
37 42 0.29
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (36 bp):
TTAACCGACCGAAATTTTTTCGGTTAATTCGGTCGG
Found at i:7387581 original size:18 final size:18
Alignment explanation
Indices: 7387558--7387651 Score: 152
Period size: 18 Copynumber: 5.2 Consensus size: 18
7387548 TTTGGTTAAA
*
7387558 AATTAACCGAATTAACCG
1 AATTAACCGAATTACCCG
*
7387576 AATTAACCGAATTATCCG
1 AATTAACCGAATTACCCG
7387594 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
*
7387612 AATTAACCAAATTACCCG
1 AATTAACCGAATTACCCG
*
7387630 AATTAACCGAATTACCCA
1 AATTAACCGAATTACCCG
7387648 AATT
1 AATT
7387652 GAATCACTAC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 71 1.00
ACGTcount: A:0.43, C:0.24, G:0.09, T:0.24
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:7387651 original size:9 final size:9
Alignment explanation
Indices: 7387558--7387643 Score: 136
Period size: 9 Copynumber: 9.6 Consensus size: 9
7387548 TTTGGTTAAA
7387558 AATTAACCG
1 AATTAACCG
7387567 AATTAACCG
1 AATTAACCG
7387576 AATTAACCG
1 AATTAACCG
*
7387585 AATTATCCG
1 AATTAACCG
7387594 AATTAACCG
1 AATTAACCG
*
7387603 AATTACCCG
1 AATTAACCG
*
7387612 AATTAACCA
1 AATTAACCG
*
7387621 AATTACCCG
1 AATTAACCG
7387630 AATTAACCG
1 AATTAACCG
7387639 AATTA
1 AATTA
7387644 CCCAAATTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 69 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:7392913 original size:7 final size:7
Alignment explanation
Indices: 7392896--7392931 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
7392886 ACCCATACCC
7392896 TTTTC-T
1 TTTTCTT
7392902 TTTTCTT
1 TTTTCTT
7392909 TTTTCTT
1 TTTTCTT
7392916 TTTTCTT
1 TTTTCTT
7392923 TTTT-TT
1 TTTTCTT
7392929 TTT
1 TTT
7392932 GCTCTCCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 10 0.34
7 19 0.66
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTCTT
Found at i:7394093 original size:58 final size:58
Alignment explanation
Indices: 7394005--7394139 Score: 157
Period size: 59 Copynumber: 2.3 Consensus size: 58
7393995 TGGGAGTTAA
* *
7394005 TTTTTTTTTCTAAGTTAGCCCTGAATTTGGCAATTG-TCCCACATTCGGACCTGAACC
1 TTTTTTTTTCTAAGTTAGCCCTAAACTTGGCAATTGTTCCCACATTCGGACCTGAACC
** * * *
7394062 TTTTTTTATT-TAAGTTAGGCCCTAAACTTGGCAATTGTTCTTACATTGGGACTTTAACC
1 TTTTTTT-TTCTAAGTTA-GCCCTAAACTTGGCAATTGTTCCCACATTCGGACCTGAACC
*
7394121 TTTTTTTTGTCCAAGTTAG
1 TTTTTTTT-TCTAAGTTAG
7394140 TCCTTAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
57 14 0.22
58 20 0.31
59 25 0.38
60 6 0.09
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (58 bp):
TTTTTTTTTCTAAGTTAGCCCTAAACTTGGCAATTGTTCCCACATTCGGACCTGAACC
Found at i:7397560 original size:11 final size:12
Alignment explanation
Indices: 7397529--7397561 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
7397519 TCATAATGTT
7397529 AAAGTTCTCAAA
1 AAAGTTCTCAAA
7397541 AAAGGTTCTCAAA
1 AAA-GTTCTCAAA
7397554 AAA-TTCTC
1 AAAGTTCTC
7397562 TTGTAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.25
12 3 0.15
13 12 0.60
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.27
Consensus pattern (12 bp):
AAAGTTCTCAAA
Found at i:7399363 original size:19 final size:19
Alignment explanation
Indices: 7399325--7399441 Score: 90
Period size: 19 Copynumber: 6.4 Consensus size: 19
7399315 ACAAAATAAT
**
7399325 TTCAAAATAAATTTAGAAAA
1 TTCAAAAT-AATTTTTAAAA
7399345 TTCAAAATAATTTTTAAAA
1 TTCAAAATAATTTTTAAAA
7399364 TTCAAAAT-A--TTT---A
1 TTCAAAATAATTTTTAAAA
* *
7399377 -TAAAAATAA-ATTTAGAAA
1 TTCAAAATAATTTTTA-AAA
7399395 TTCAAAATAATTTTTAAAA
1 TTCAAAATAATTTTTAAAA
*
7399414 TTCAAAAT-ATTTATAAAAA
1 TTCAAAATAATTT-TTAAAA
7399433 TTCCAAAAT
1 TT-CAAAAT
7399442 TTTTATTTTT
Statistics
Matches: 81, Mismatches: 6, Indels: 20
0.76 0.06 0.19
Matches are distributed among these distances:
12 6 0.07
13 2 0.02
14 3 0.04
16 3 0.04
18 6 0.07
19 43 0.53
20 18 0.22
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (19 bp):
TTCAAAATAATTTTTAAAA
Found at i:7399364 original size:50 final size:50
Alignment explanation
Indices: 7399310--7399433 Score: 196
Period size: 50 Copynumber: 2.5 Consensus size: 50
7399300 ATCTTAACAA
* *
7399310 AAAATACAAAATAATT-TCAAAATAAATTTAGAAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTATAAAAATAAATTTAG-AAATTCAAAATAATTTTT
*
7399360 AAAATTCAAAATATTTATAAAAATAAATTTAGAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTATAAAAATAAATTTAGAAATTCAAAATAATTTTT
*
7399410 AAAATTCAAAATATTTATAAAAAT
1 AAAATTCAAAATAATTATAAAAAT
7399434 TCCAAAATTT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 56 0.80
51 14 0.20
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (50 bp):
AAAATTCAAAATAATTATAAAAATAAATTTAGAAATTCAAAATAATTTTT
Found at i:7399383 original size:31 final size:32
Alignment explanation
Indices: 7399348--7399413 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
7399338 TAGAAAATTC
*
7399348 AAAATAATTTTTA-AAATTCAAAAT-ATTTATA
1 AAAATAA-ATTTAGAAATTCAAAATAATTTATA
*
7399379 AAAATAAATTTAGAAATTCAAAATAATTTTTA
1 AAAATAAATTTAGAAATTCAAAATAATTTATA
7399411 AAA
1 AAA
7399414 TTCAAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 4 0.13
31 18 0.58
32 9 0.29
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (32 bp):
AAAATAAATTTAGAAATTCAAAATAATTTATA
Found at i:7403443 original size:29 final size:28
Alignment explanation
Indices: 7403393--7403595 Score: 212
Period size: 29 Copynumber: 7.5 Consensus size: 28
7403383 NNNNNNNTAT
*
7403393 TTTAATTAAAAACCCTAACCTAACTTAA
1 TTTAATTAAAAACCCTAACCTAACCTAA
7403421 TTTAATTAAAAACCCTAACCCTAACCTAA
1 TTTAATTAAAAACCCTAA-CCTAACCTAA
* * *
7403450 TTTACA-TGAAAACCCTAACCCTAACATAT
1 TTTA-ATTAAAAACCCTAA-CCTAACCTAA
7403479 TTTAATTAAAAACCCTAACCTAA-C---
1 TTTAATTAAAAACCCTAACCTAACCTAA
* *
7403503 -TTAATTAAAGACCGTAACCTAA-C---
1 TTTAATTAAAAACCCTAACCTAACCTAA
* *
7403526 -TTAATTGAAATCCCTAACCTAACCTAA
1 TTTAATTAAAAACCCTAACCTAACCTAA
*
7403553 TTTAATTAAAAACCCCAACCCTAACCTAA
1 TTTAATTAAAAACCCTAA-CCTAACCTAA
7403582 TTTAATTAAAAACC
1 TTTAATTAAAAACC
7403596 GTTGTAGTAC
Statistics
Matches: 151, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
23 39 0.26
24 1 0.01
28 38 0.25
29 72 0.48
30 1 0.01
ACGTcount: A:0.44, C:0.25, G:0.02, T:0.29
Consensus pattern (28 bp):
TTTAATTAAAAACCCTAACCTAACCTAA
Found at i:7403464 original size:23 final size:23
Alignment explanation
Indices: 7403437--7403554 Score: 105
Period size: 23 Copynumber: 4.9 Consensus size: 23
7403427 TAAAAACCCT
*
7403437 AACCCTAACCTAATTTACA-TGAA
1 AACCCTAACCTAACTTA-ATTGAA
*
7403460 AACCCTAACCCTAACATATTTTAATTAAA
1 AACCCTAA-CCTAAC-----TTAATTGAA
7403489 AACCCTAACCTAACTTAATT-AA
1 AACCCTAACCTAACTTAATTGAA
*
7403511 AGACCGTAACCTAACTTAATTGAA
1 A-ACCCTAACCTAACTTAATTGAA
* *
7403535 ATCCCTAACCTAACCTAATT
1 AACCCTAACCTAACTTAATT
7403555 TAATTAAAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
22 3 0.04
23 48 0.60
24 8 0.10
28 7 0.09
29 14 0.17
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.28
Consensus pattern (23 bp):
AACCCTAACCTAACTTAATTGAA
Found at i:7403572 original size:23 final size:23
Alignment explanation
Indices: 7403480--7403583 Score: 82
Period size: 23 Copynumber: 4.3 Consensus size: 23
7403470 CTAACATATT
*
7403480 TTAATTAAAAACCCTAACCTAAC
1 TTAATTAAAAACCCCAACCTAAC
* **
7403503 TTAATTAAAGACCGTAACCTAAC
1 TTAATTAAAAACCCCAACCTAAC
** *
7403526 TTAATTGAAATCCCTAACCTAACCTAAT
1 TTAATT-AAAAACC---CC-AACCTAAC
7403554 TTAATTAAAAACCCCAACCCTAAC
1 TTAATTAAAAACCCCAA-CCTAAC
*
7403578 CTAATT
1 TTAATT
7403584 TAATTAAAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
23 29 0.45
24 17 0.27
27 5 0.08
28 13 0.20
ACGTcount: A:0.43, C:0.26, G:0.03, T:0.28
Consensus pattern (23 bp):
TTAATTAAAAACCCCAACCTAAC
Found at i:7408909 original size:45 final size:45
Alignment explanation
Indices: 7408845--7409024 Score: 360
Period size: 45 Copynumber: 4.0 Consensus size: 45
7408835 TCAGAAATTT
7408845 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
1 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
7408890 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
1 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
7408935 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
1 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
7408980 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
1 TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
7409025 ATCTCAAAAG
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 135 1.00
ACGTcount: A:0.49, C:0.07, G:0.22, T:0.22
Consensus pattern (45 bp):
TACGTAATAATGAGGGTTAAAGAGCTTAAAAAGAGAATGATCAAA
Found at i:7415084 original size:43 final size:44
Alignment explanation
Indices: 7414978--7415086 Score: 193
Period size: 44 Copynumber: 2.5 Consensus size: 44
7414968 CGGATCACAT
7414978 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* *
7415022 TTATCACTTGTAACCGATCAGATAAGTGTAGCTAAA-CTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
7415065 TTATCACTTGTCACTGATCAGA
1 TTATCACTTGTCACTGATCAGA
7415087 AGTACTCAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
43 27 0.44
44 34 0.56
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (44 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:7418136 original size:16 final size:17
Alignment explanation
Indices: 7418115--7418148 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7418105 ACAAAATTAT
*
7418115 TAGTAA-AAGGTTAATA
1 TAGTAATAAGGTAAATA
7418131 TAGTAATAAGGTAAATA
1 TAGTAATAAGGTAAATA
7418148 T
1 T
7418149 TAACTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
TAGTAATAAGGTAAATA
Found at i:7419103 original size:30 final size:30
Alignment explanation
Indices: 7419043--7419110 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
7419033 GACGACGACG
* * *
7419043 CAGGCCCATCAACAGCGCCCCCACAATCAC
1 CAGGCCCAGCAACAGCACCCACACAATCAC
* *
7419073 CAGGCCCAGCAACAGCACCGACACAGTCAC
1 CAGGCCCAGCAACAGCACCCACACAATCAC
*
7419103 CCGGCCCA
1 CAGGCCCA
7419111 ACACTTCAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.29, C:0.49, G:0.18, T:0.04
Consensus pattern (30 bp):
CAGGCCCAGCAACAGCACCCACACAATCAC
Found at i:7419187 original size:18 final size:18
Alignment explanation
Indices: 7419164--7419201 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7419154 TGCCAGGTGC
* *
7419164 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
7419182 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
7419200 GT
1 GT
7419202 TTCATTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:7420211 original size:24 final size:23
Alignment explanation
Indices: 7420184--7420239 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
7420174 AATAAGCACC
7420184 AAAAATTTATTTTTAAAAAAATTA
1 AAAAATTTA-TTTTAAAAAAATTA
** * *
7420208 AAAAAAGTATTTTAAAAATATTT
1 AAAAATTTATTTTAAAAAAATTA
7420231 AAAAATTTA
1 AAAAATTTA
7420240 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
AAAAATTTATTTTAAAAAAATTA
Found at i:7440167 original size:14 final size:15
Alignment explanation
Indices: 7440142--7440170 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7440132 CCATTCAATT
7440142 AATCAGTTCATAACA
1 AATCAGTTCATAACA
7440157 AATCA-TTCATAACA
1 AATCAGTTCATAACA
7440171 TATTCAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
AATCAGTTCATAACA
Found at i:7440410 original size:40 final size:39
Alignment explanation
Indices: 7440355--7440486 Score: 117
Period size: 40 Copynumber: 3.4 Consensus size: 39
7440345 TCAGTTTGGT
* *
7440355 ACCCAGTACCTCATCGGATAATTCGAAGTACTAAGTTGAC
1 ACCCAGTGCCTCATCGGATAATCCGAAGTA-TAAGTTGAC
* * * *
7440395 ACCCAGTGTCTCATCGGCTAAACCGAAGTA-AA-TTGGC
1 ACCCAGTGCCTCATCGGATAATCCGAAGTATAAGTTGAC
* *
7440432 ACCTAGTGCCTCATCGAATTAATCCGAAGTA-ATAGATTGAC
1 ACCCAGTGCCTCATCGGA-TAATCCGAAGTATA-AG-TTGAC
* *
7440473 ACCCCGTGTCTCAT
1 ACCCAGTGCCTCAT
7440487 TGACTTGTAA
Statistics
Matches: 73, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
37 18 0.25
38 14 0.19
39 1 0.01
40 25 0.34
41 15 0.21
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (39 bp):
ACCCAGTGCCTCATCGGATAATCCGAAGTATAAGTTGAC
Found at i:7447191 original size:19 final size:18
Alignment explanation
Indices: 7447163--7447199 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
7447153 CTAATGTAGT
*
7447163 AAAAAGAAAAGAAGAAGA
1 AAAAAGAAAAGAAAAAGA
7447181 AAAAAGAAAAAGAAAAAGA
1 AAAAAG-AAAAGAAAAAGA
7447200 CTTGGTCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAGAAAAAGA
Found at i:7449091 original size:99 final size:100
Alignment explanation
Indices: 7448974--7449172 Score: 391
Period size: 99 Copynumber: 2.0 Consensus size: 100
7448964 ATAAAGATAT
7448974 ATATATTTTTTATGAATTTTATTAATAATTAATTATATATATATAGTTGCCAATAGAGTCTGAAC
1 ATATATTTTTTATGAATTTTATTAATAATTAATTATATATATATAGTTGCCAATAGAGTCTGAAC
7449039 TCTGTCAGATTGACATTGTTGCTACTATATGAAGA
66 TCTGTCAGATTGACATTGTTGCTACTATATGAAGA
7449074 ATATA-TTTTTATGAATTTTATTAATAATTAATTATATATATATAGTTGCCAATAGAGTCTGAAC
1 ATATATTTTTTATGAATTTTATTAATAATTAATTATATATATATAGTTGCCAATAGAGTCTGAAC
7449138 TCTGTCAGATTGACATTGTTGCTACTATATGAAGA
66 TCTGTCAGATTGACATTGTTGCTACTATATGAAGA
7449173 CGTAGGTTAA
Statistics
Matches: 99, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 94 0.95
100 5 0.05
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (100 bp):
ATATATTTTTTATGAATTTTATTAATAATTAATTATATATATATAGTTGCCAATAGAGTCTGAAC
TCTGTCAGATTGACATTGTTGCTACTATATGAAGA
Found at i:7455790 original size:18 final size:17
Alignment explanation
Indices: 7455767--7455810 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7455757 AATTTCAAAA
7455767 AATTATTTTAAAAATTAT
1 AATTATTTT-AAAATTAT
**
7455785 AATTATAATAAAATTAT
1 AATTATTTTAAAATTAT
*
7455802 AAATATTTT
1 AATTATTTT
7455811 TAATTTTAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTATTTTAAAATTAT
Found at i:7457935 original size:22 final size:22
Alignment explanation
Indices: 7457910--7457966 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 22
7457900 TACAAATTAA
7457910 ATCTCTAAGATTACAAAATCAT
1 ATCTCTAAGATTACAAAATCAT
* *
7457932 ATCTTCTAAGATTGC-ATATCAT
1 ATC-TCTAAGATTACAAAATCAT
7457954 A--TCTAAGATTACA
1 ATCTCTAAGATTACA
7457967 TATCCTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 10 0.33
22 10 0.33
23 10 0.33
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (22 bp):
ATCTCTAAGATTACAAAATCAT
Found at i:7457943 original size:23 final size:22
Alignment explanation
Indices: 7457900--7457957 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7457890 AAAGGGTATC
* *
7457900 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7457921 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
7457944 TGCATATCATATCT
1 TACAAATCATATCT
7457958 AAGATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7468867 original size:2 final size:2
Alignment explanation
Indices: 7468860--7468915 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
7468850 CAACAGGCTC
* *
7468860 CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT AT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7468902 CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT
7468916 TACTATCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.02, C:0.46, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:7469274 original size:15 final size:16
Alignment explanation
Indices: 7469246--7469276 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7469236 ACATGATACC
7469246 TAGAATTTCTTTTTTA
1 TAGAATTTCTTTTTTA
*
7469262 TAGATTTTCTTTTTT
1 TAGAATTTCTTTTTT
7469277 TCAAAATTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (16 bp):
TAGAATTTCTTTTTTA
Found at i:7469830 original size:29 final size:29
Alignment explanation
Indices: 7469797--7469872 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
7469787 TAATACATTC
7469797 AGAAG-AGAAGGACATCT-TGGTTTATAGTT
1 AGAAGCAGAAGGA-A-CTATGGTTTATAGTT
**
7469826 AGAAGCAGACTGAACTATGGTTTATAGTT
1 AGAAGCAGAAGGAACTATGGTTTATAGTT
**
7469855 AGAAGCAGACTGAACTAT
1 AGAAGCAGAAGGAACTAT
7469873 CTAGAAAGCG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 2 0.05
29 36 0.84
30 5 0.12
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.28
Consensus pattern (29 bp):
AGAAGCAGAAGGAACTATGGTTTATAGTT
Found at i:7475283 original size:154 final size:154
Alignment explanation
Indices: 7475003--7475309 Score: 605
Period size: 154 Copynumber: 2.0 Consensus size: 154
7474993 ACTTTTTTAT
7475003 GCCTATGTCTATCTAGGACCTTTCTCTCTGTTCTTTCTTCTCTGATAATGCAGAGTGGTTGGGGT
1 GCCTATGTCTATCTAGGACCTTTCTCTCTGTTCTTTCTTCTCTGATAATGCAGAGTGGTTGGGGT
7475068 GTTGGCAGCATTAACTTTTGTATGTCAATGGTTGTTCGGGATCAGTATATCAATTATTGGTTAAA
66 GTTGGCAGCATTAACTTTTGTATGTCAATGGTTGTTCGGGATCAGTATATCAATTATTGGTTAAA
7475133 GTAATAAGCAATTTGTTTTGTACA
131 GTAATAAGCAATTTGTTTTGTACA
7475157 GCCTATGTCTATCTAGGACCTTTCTCTCTGTTCTTTCTTCTCTGATAATGCAGAGTGGTTGGGGT
1 GCCTATGTCTATCTAGGACCTTTCTCTCTGTTCTTTCTTCTCTGATAATGCAGAGTGGTTGGGGT
*
7475222 GTTGGCAGCATTAACTTTTGTATGTCGATGGTTGTTCGGGATCAGTATATCAATTATTGGTTAAA
66 GTTGGCAGCATTAACTTTTGTATGTCAATGGTTGTTCGGGATCAGTATATCAATTATTGGTTAAA
7475287 GTAATAAGCAATTTGTTTTGTAC
131 GTAATAAGCAATTTGTTTTGTAC
7475310 GGTCTATCAA
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 152 1.00
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.41
Consensus pattern (154 bp):
GCCTATGTCTATCTAGGACCTTTCTCTCTGTTCTTTCTTCTCTGATAATGCAGAGTGGTTGGGGT
GTTGGCAGCATTAACTTTTGTATGTCAATGGTTGTTCGGGATCAGTATATCAATTATTGGTTAAA
GTAATAAGCAATTTGTTTTGTACA
Found at i:7480193 original size:69 final size:69
Alignment explanation
Indices: 7480111--7480249 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
7480101 CAAATTGGGT
*
7480111 ATACAAGAAAAGAAATAGAATTGCCTACTTCGAGTTTCCATTTCATGAGATTTTGCGGATACACA
1 ATACAAGAAAAGAAATAGAATTGCCTACTCCGAGTTTCCATTTCATGAGATTTTGCGGATACACA
7480176 ATAA
66 ATAA
*
7480180 ATACAAGAAAAGAAATAGAATTGCCTACTCCGAGTTTCCATTTCATGAGATTTTGTGGATACACA
1 ATACAAGAAAAGAAATAGAATTGCCTACTCCGAGTTTCCATTTCATGAGATTTTGCGGATACACA
7480245 ATAA
66 ATAA
7480249 A
1 A
7480250 GGGGAATGGG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (69 bp):
ATACAAGAAAAGAAATAGAATTGCCTACTCCGAGTTTCCATTTCATGAGATTTTGCGGATACACA
ATAA
Found at i:7486571 original size:14 final size:14
Alignment explanation
Indices: 7486552--7486586 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7486542 TAATAAACAC
* *
7486552 AAAAATAAAATTTT
1 AAAAATAAAAATAT
7486566 AAAAATAAAAATAT
1 AAAAATAAAAATAT
7486580 AAAAATA
1 AAAAATA
7486587 TTTTTAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAAATAAAAATAT
Found at i:7489536 original size:44 final size:45
Alignment explanation
Indices: 7489479--7489568 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
7489469 ACCTCCATCC
7489479 CATTCAACCAAACACA-AGA-ATACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACA-ATAGATATACTATTACGCCTCTATTCCATTA
* * * * *
7489523 CATTCAACTAAACAATTGATTTGCTATTACGCCTCTATTTCATTA
1 CATTCAACCAAACAATAGATATACTATTACGCCTCTATTCCATTA
7489568 C
1 C
7489569 GCCTCTATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
43 1 0.03
44 15 0.38
45 23 0.59
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.33
Consensus pattern (45 bp):
CATTCAACCAAACAATAGATATACTATTACGCCTCTATTCCATTA
Found at i:7489569 original size:16 final size:16
Alignment explanation
Indices: 7489548--7489584 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
7489538 TTGATTTGCT
*
7489548 ATTACGCCTCTATTTC
1 ATTACGCCTCTATTCC
7489564 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
7489580 ATTAC
1 ATTAC
7489585 AACGAAGCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:7501063 original size:17 final size:17
Alignment explanation
Indices: 7501041--7501079 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
7501031 GAAGAAGAAA
7501041 GGAAGAAAGAGTTGGTG
1 GGAAGAAAGAGTTGGTG
7501058 GGAAGAAAGAGTTGGTG
1 GGAAGAAAGAGTTGGTG
7501075 GGAAG
1 GGAAG
7501080 GGAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.49, T:0.15
Consensus pattern (17 bp):
GGAAGAAAGAGTTGGTG
Found at i:7510849 original size:31 final size:31
Alignment explanation
Indices: 7510810--7511004 Score: 152
Period size: 31 Copynumber: 6.4 Consensus size: 31
7510800 CAAAAAAAGA
7510810 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
* * ***** *
7510841 TCAGGTACCAAATT-GCACCCCCA--AAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
* * * *
7510869 TTAAGTACCAACTTAAGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
*
7510900 TTAGGTACCAAATTAGGAAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGG-AAAAAGAGTCAAGT
* *
7510932 TTAGATACCAAATT-GGACCAAAA-A--AAAGT
1 TTAGGTACCAAATTAGGA--AAAAGAGTCAAGT
* *
7510961 TTAAGTACCAAATTAGGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
*
7510992 TCAGGTACCAAAT
1 TTAGGTACCAAAT
7511005 GTTATATTAA
Statistics
Matches: 122, Mismatches: 32, Indels: 20
0.70 0.18 0.11
Matches are distributed among these distances:
28 19 0.16
29 17 0.14
30 7 0.06
31 48 0.39
32 31 0.25
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (31 bp):
TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
Found at i:7510927 original size:32 final size:31
Alignment explanation
Indices: 7510865--7511004 Score: 153
Period size: 31 Copynumber: 4.5 Consensus size: 31
7510855 GCACCCCCAA
* * *
7510865 AAGTTTAAGTACCAACTTAAGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
7510896 AAGTTTAGGTACCAAATTAGGAAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGG-AAAAAGTGTC
* **
7510928 AAGTTTAGATACCAAATT-GGACCAAAA---AA
1 AAGTTTAGGTACCAAATTAGGA--AAAAGTGTC
*
7510957 AAGTTTAAGTACCAAATTAGGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
*
7510988 AAGTTCAGGTACCAAAT
1 AAGTTTAGGTACCAAAT
7511005 GTTATATTAA
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
28 4 0.04
29 16 0.18
30 4 0.04
31 35 0.39
32 31 0.34
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (31 bp):
AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
Found at i:7510983 original size:92 final size:90
Alignment explanation
Indices: 7510810--7511004 Score: 282
Period size: 92 Copynumber: 2.1 Consensus size: 90
7510800 CAAAAAAAGA
* ***
7510810 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTGCACCCCCAAAAGTTTAAGT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGATACCAAATTGCACCAAAAAAAGTTTAAGT
*
7510875 ACCAACTTAAGAAAAAGTGTCAAGT
66 ACCAAATTAAGAAAAAGTGTCAAGT
* * *
7510900 TTAGGTACCAAATTAGGAAAAAAGTGTCAAGTTTAGATACCAAATTGGACCAAAAAAAAGTTTAA
1 TTAGGTACCAAATTAGG-AAAAAGAGTCAAGTTCAGATACCAAATTGCACC-AAAAAAAGTTTAA
*
7510965 GTACCAAATTAGGAAAAAGTGTCAAGT
64 GTACCAAATTAAGAAAAAGTGTCAAGT
*
7510992 TCAGGTACCAAAT
1 TTAGGTACCAAAT
7511005 GTTATATTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
90 17 0.18
91 29 0.31
92 47 0.51
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (90 bp):
TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGATACCAAATTGCACCAAAAAAAGTTTAAGT
ACCAAATTAAGAAAAAGTGTCAAGT
Found at i:7515690 original size:5 final size:5
Alignment explanation
Indices: 7515680--7515711 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7515670 GAGATTCCCA
7515680 TTTCT TTTCT TTTCT TTTCT TTTCT TTT-T TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
7515712 GTATTCAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTCT
Found at i:7519160 original size:117 final size:118
Alignment explanation
Indices: 7519012--7519247 Score: 456
Period size: 117 Copynumber: 2.0 Consensus size: 118
7519002 AACAAAATCT
7519012 TCTTTTGTATAATTTGTTTTCTTGTGTATGAAGAGGCTTAGAGATTTAAAAAATTTTAAATTTAT
1 TCTTTTGTATAATTTGTTTTCTTGTGTATGAAGAGGCTTAGAGATTTAAAAAATTTTAAATTTAT
7519077 TATGTTTAATAATAACATTATTATTAAATTTATTTGAATAATAACTTGAAATA
66 TATGTTTAATAATAACATTATTATTAAATTTATTTGAATAATAACTTGAAATA
7519130 TCTTTTGTAT-ATTTGTTTTCTTGTGTATGAAGAGGCTTAGAGATTTAAAAAATTTTAAATTTAT
1 TCTTTTGTATAATTTGTTTTCTTGTGTATGAAGAGGCTTAGAGATTTAAAAAATTTTAAATTTAT
*
7519194 TATGTTTAATAATAACATTATTATTAAATTTTTTTGAATAATAACTTGAAATA
66 TATGTTTAATAATAACATTATTATTAAATTTATTTGAATAATAACTTGAAATA
7519247 T
1 T
7519248 GGATTATGCT
Statistics
Matches: 117, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
117 107 0.91
118 10 0.09
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.48
Consensus pattern (118 bp):
TCTTTTGTATAATTTGTTTTCTTGTGTATGAAGAGGCTTAGAGATTTAAAAAATTTTAAATTTAT
TATGTTTAATAATAACATTATTATTAAATTTATTTGAATAATAACTTGAAATA
Found at i:7521848 original size:120 final size:120
Alignment explanation
Indices: 7521635--7522538 Score: 1808
Period size: 120 Copynumber: 7.5 Consensus size: 120
7521625 ATTGCTTTGA
7521635 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7521700 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7521755 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7521820 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7521875 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7521940 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7521995 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7522060 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7522115 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7522180 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7522235 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7522300 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7522355 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7522420 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7522475 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATC
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATC
7522539 TATTTTTCAT
Statistics
Matches: 784, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 784 1.00
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.36
Consensus pattern (120 bp):
CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
Found at i:7524978 original size:120 final size:120
Alignment explanation
Indices: 7524765--7525348 Score: 1168
Period size: 120 Copynumber: 4.9 Consensus size: 120
7524755 ATTGCTTTGA
7524765 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7524830 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7524885 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7524950 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7525005 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7525070 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7525125 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7525190 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
7525245 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
1 CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
7525310 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTA
66 GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTA
7525349 GGGAAAGGGG
Statistics
Matches: 464, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 464 1.00
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.35
Consensus pattern (120 bp):
CTCCTAACCAATTGCTTTGACTCTCATTCCCACTTCTATTTTCAGACTGCCCTCTTCTATTATCA
GAGAACAAAAGAGAGCAATTATCAGACTGCCCTCTTCTATTTTCACCTTCTTCAT
Found at i:7529698 original size:19 final size:21
Alignment explanation
Indices: 7529657--7529705 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
7529647 GTAAATAATT
7529657 TTTTTGTTATATTATTTTGGTA
1 TTTTT-TTATATTATTTTGGTA
*
7529679 TTTTTTTAT-TTCTTTT-GTA
1 TTTTTTTATATTATTTTGGTA
*
7529698 TTATTTTA
1 TTTTTTTA
7529706 GTAAAAATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.40
20 6 0.24
21 4 0.16
22 5 0.20
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.73
Consensus pattern (21 bp):
TTTTTTTATATTATTTTGGTA
Found at i:7529721 original size:33 final size:33
Alignment explanation
Indices: 7529684--7529798 Score: 90
Period size: 33 Copynumber: 3.3 Consensus size: 33
7529674 TGGTATTTTT
7529684 TTATTTCTTTTGTATTATTTTAGTAAAAATCCC
1 TTATTTCTTTTGTATTATTTTAGTAAAAATCCC
** * **
7529717 TTATTTCTTTCT-TAATATATTTTA-TCCTAACTCGTATTT
1 TTATTTCTTT-TGT-AT-TATTTTAGT-AAAAATC----CC
*
7529756 TTTTTTCTTTTGTATTATTTTAGTAAAAATCCC
1 TTATTTCTTTTGTATTATTTTAGTAAAAATCCC
7529789 TTATTTCTTT
1 TTATTTCTTT
7529799 CTTAATATAT
Statistics
Matches: 60, Mismatches: 12, Indels: 20
0.65 0.13 0.22
Matches are distributed among these distances:
33 20 0.33
34 4 0.07
35 11 0.18
37 11 0.18
38 4 0.07
39 10 0.17
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.59
Consensus pattern (33 bp):
TTATTTCTTTTGTATTATTTTAGTAAAAATCCC
Found at i:7529764 original size:72 final size:73
Alignment explanation
Indices: 7529680--7529821 Score: 277
Period size: 72 Copynumber: 2.0 Consensus size: 73
7529670 ATTTTGGTAT
7529680 TTTTTTATTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTCTTTCTTAATATATTTTATCCT
1 TTTTTTATTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTCTTTCTTAATATATTTTATCCT
7529745 AACTCGTA
66 AACTCGTA
7529753 TTTTTT-TTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTCTTTCTTAATATATTTTATCCT
1 TTTTTTATTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTCTTTCTTAATATATTTTATCCT
7529817 AACTC
66 AACTC
7529822 ATAACTTTTC
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
72 63 0.91
73 6 0.09
ACGTcount: A:0.24, C:0.14, G:0.04, T:0.58
Consensus pattern (73 bp):
TTTTTTATTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTCTTTCTTAATATATTTTATCCT
AACTCGTA
Found at i:7529800 original size:37 final size:37
Alignment explanation
Indices: 7529687--7529801 Score: 112
Period size: 37 Copynumber: 3.2 Consensus size: 37
7529677 TATTTTTTTA
7529687 TTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTC
1 TTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTC
** *** * * *
7529724 TTTC-TTAATA-TATTTTA-TCCTAA-CTCGTATTTTTT
1 TTTCTTTTGTATTATTTTAGTAAAAATC-CCT-TATTTC
7529759 TTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTC
1 TTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTC
7529796 TTTCTT
1 TTTCTT
7529802 AATATATTTT
Statistics
Matches: 56, Mismatches: 16, Indels: 12
0.67 0.19 0.14
Matches are distributed among these distances:
33 1 0.02
34 5 0.09
35 15 0.27
36 8 0.14
37 21 0.38
38 5 0.09
39 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.04, T:0.59
Consensus pattern (37 bp):
TTTCTTTTGTATTATTTTAGTAAAAATCCCTTATTTC
Found at i:7541866 original size:189 final size:189
Alignment explanation
Indices: 7541546--7541925 Score: 742
Period size: 189 Copynumber: 2.0 Consensus size: 189
7541536 CCCATTTGAA
7541546 CACTATAAACAACTCAAGTAAATTAGGTTTAGAAATTCTTTGTTAATGAGCAAAGTCTTCAGCTA
1 CACTATAAACAACTCAAGTAAATTAGGTTTAGAAATTCTTTGTTAATGAGCAAAGTCTTCAGCTA
7541611 TATATATATCCTTTAAAAGATCTAACAGTGCCAAACTCATCCTCAATGCATCAACCCTTTTTCAC
66 TATATATATCCTTTAAAAGATCTAACAGTGCCAAACTCATCCTCAATGCATCAACCCTTTTTCAC
7541676 AGATCAAAGAAGGTCAATCGTGAGTACCAAAGCACCTCAAAGTCCAAAATAGCCAAGAT
131 AGATCAAAGAAGGTCAATCGTGAGTACCAAAGCACCTCAAAGTCCAAAATAGCCAAGAT
*
7541735 CACTATAAACAACTCAAGTAAATTAGGTTTAGAAATTCTTTGTTAATGAGCAAAGTCTTCAGTTA
1 CACTATAAACAACTCAAGTAAATTAGGTTTAGAAATTCTTTGTTAATGAGCAAAGTCTTCAGCTA
*
7541800 TATATATATCCTTTAAAAGATCTAACAGTGCCAAACTCATCCTCCATGCATCAACCCTTTTTCAC
66 TATATATATCCTTTAAAAGATCTAACAGTGCCAAACTCATCCTCAATGCATCAACCCTTTTTCAC
7541865 AGATCAAAGAAGGTCAATCGTGAGTACCAAAGCACCTCAAAGTCCAAAATAGCCAAGAT
131 AGATCAAAGAAGGTCAATCGTGAGTACCAAAGCACCTCAAAGTCCAAAATAGCCAAGAT
7541924 CA
1 CA
7541926 ACACCACCAA
Statistics
Matches: 189, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 189 1.00
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (189 bp):
CACTATAAACAACTCAAGTAAATTAGGTTTAGAAATTCTTTGTTAATGAGCAAAGTCTTCAGCTA
TATATATATCCTTTAAAAGATCTAACAGTGCCAAACTCATCCTCAATGCATCAACCCTTTTTCAC
AGATCAAAGAAGGTCAATCGTGAGTACCAAAGCACCTCAAAGTCCAAAATAGCCAAGAT
Found at i:7542307 original size:2 final size:2
Alignment explanation
Indices: 7542300--7542326 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7542290 GCTAAAACAA
7542300 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7542327 AGATGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7544604 original size:23 final size:21
Alignment explanation
Indices: 7544564--7544621 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
7544554 TATAATAACG
*
7544564 AAACCACAAC-AAAATAATGA
1 AAACAACAACAAAAATAATGA
7544584 CATAACAACAACAAAAATAATGA
1 -A-AACAACAACAAAAATAATGA
*
7544607 AAACAACATCAAAAA
1 AAACAACAACAAAAA
7544622 GCAGTAACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.42
22 9 0.27
23 10 0.30
ACGTcount: A:0.67, C:0.19, G:0.03, T:0.10
Consensus pattern (21 bp):
AAACAACAACAAAAATAATGA
Found at i:7544613 original size:21 final size:22
Alignment explanation
Indices: 7544555--7544621 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
7544545 TAGTAGTAAT
* *
7544555 ATAATAACGAAACCACAAC-AAA
1 ATAATGAC-AAACAACAACAAAA
7544577 ATAATGACATAACAACAACAAAA
1 ATAATGACA-AACAACAACAAAA
*
7544600 ATAATGA-AAACAACATCAAAA
1 ATAATGACAAACAACAACAAAA
7544621 A
1 A
7544622 GCAGTAACCT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
21 14 0.35
22 16 0.40
23 10 0.25
ACGTcount: A:0.66, C:0.18, G:0.04, T:0.12
Consensus pattern (22 bp):
ATAATGACAAACAACAACAAAA
Found at i:7552059 original size:3 final size:3
Alignment explanation
Indices: 7552053--7552079 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7552043 ACAACAAGAA
7552053 GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
7552080 TTCTTCAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:7559540 original size:18 final size:17
Alignment explanation
Indices: 7559517--7559551 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7559507 GAATAGATTT
7559517 TTAATTAAATAAATTTAA
1 TTAATTAAA-AAATTTAA
7559535 TTAATTAAAAAATTTAA
1 TTAATTAAAAAATTTAA
7559552 ACCCTAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAATTAAAAAATTTAA
Found at i:7562954 original size:7 final size:8
Alignment explanation
Indices: 7562937--7562961 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7562927 AAACTTGCTT
7562937 AAAGAAAA
1 AAAGAAAA
7562945 AAAGAAAA
1 AAAGAAAA
7562953 AAAGAAAA
1 AAAGAAAA
7562961 A
1 A
7562962 TTGTGGGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAGAAAA
Found at i:7575276 original size:12 final size:12
Alignment explanation
Indices: 7575259--7575297 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7575249 GAACCCTGGT
7575259 TTTCCTTTTCCA
1 TTTCCTTTTCCA
**
7575271 TTTCCTTTTCGT
1 TTTCCTTTTCCA
*
7575283 TTTCGTTTTCCA
1 TTTCCTTTTCCA
7575295 TTT
1 TTT
7575298 TCTGAGTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.05, C:0.26, G:0.05, T:0.64
Consensus pattern (12 bp):
TTTCCTTTTCCA
Found at i:7592843 original size:134 final size:134
Alignment explanation
Indices: 7592603--7592874 Score: 517
Period size: 134 Copynumber: 2.0 Consensus size: 134
7592593 GAAGGCGTAC
7592603 CTCTGTTCTTTGTTTCCTTTCATGATTAACAAAAGCAAGGGTTGTATCAAAATCTTGCTGAAGAA
1 CTCTGTTCTTTGTTTCCTTTCATGATTAACAAAAGCAAGGGTTGTATCAAAATCTTGCTGAAGAA
* *
7592668 ATCTCCTACAAAAATATACACATTTTAAGCACAAGGAAAAGAACTCGTAATAAAATTATTGAGTT
66 ACCTCCTACAAAAATATACACATTTTAAGCACAAGGAAAAGAACTCATAATAAAATTATTGAGTT
7592733 TCAA
131 TCAA
7592737 CTCTGTTCTTTGTTTCCTTTCATGATTAACAAAAGCAAGGGTTGTATCAAAATCTTGCTGAAGAA
1 CTCTGTTCTTTGTTTCCTTTCATGATTAACAAAAGCAAGGGTTGTATCAAAATCTTGCTGAAGAA
*
7592802 ACCTCCTACAAAAATATACACATTTTAAGCACAAGGAAAAGAACTCATACTAAAATTATTGAGTT
66 ACCTCCTACAAAAATATACACATTTTAAGCACAAGGAAAAGAACTCATAATAAAATTATTGAGTT
7592867 TCAA
131 TCAA
7592871 CTCT
1 CTCT
7592875 TCAGCAGACA
Statistics
Matches: 135, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
134 135 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.32
Consensus pattern (134 bp):
CTCTGTTCTTTGTTTCCTTTCATGATTAACAAAAGCAAGGGTTGTATCAAAATCTTGCTGAAGAA
ACCTCCTACAAAAATATACACATTTTAAGCACAAGGAAAAGAACTCATAATAAAATTATTGAGTT
TCAA
Found at i:7597271 original size:114 final size:114
Alignment explanation
Indices: 7597068--7597298 Score: 365
Period size: 114 Copynumber: 2.0 Consensus size: 114
7597058 AGATATTTCT
* *
7597068 TTTTCAATTTATCCTCTTTGAAATTATCATCAAATGATAAAGCCGTCTAAAAGCTACACACTCCA
1 TTTTCAATTTATCCTCTTTGAAATTATCATCAAATG--AAAGCCATCTAAAAACTACACACTCCA
* * * *
7597133 GCTGAAATCACTCGAATTCTATGAATAGTAAGCCCTTCCATATCTTCATGGA
64 GATGAAATCACTCAAATTCTATGAATAG-AAGCACTTCCACATCTTCATGGA
*
7597185 TTTTCAGTTTATCCTCTTTGAAATTATCATCAAATG-AAGCCATCTAAAAACTACACACTCCAGA
1 TTTTCAATTTATCCTCTTTGAAATTATCATCAAATGAAAGCCATCTAAAAACTACACACTCCAGA
7597249 TGAAATCACTCAAATTCTATGAATAGAAGCACTTCCACATCTTCATGGA
66 TGAAATCACTCAAATTCTATGAATAGAAGCACTTCCACATCTTCATGGA
7597298 T
1 T
7597299 AATCACAAGC
Statistics
Matches: 107, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
113 22 0.21
114 50 0.47
117 35 0.33
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (114 bp):
TTTTCAATTTATCCTCTTTGAAATTATCATCAAATGAAAGCCATCTAAAAACTACACACTCCAGA
TGAAATCACTCAAATTCTATGAATAGAAGCACTTCCACATCTTCATGGA
Found at i:7599344 original size:21 final size:21
Alignment explanation
Indices: 7599281--7599344 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
7599271 AATCAAAGTA
7599281 CTATGGGGACAGAACTTTATG
1 CTATGGGGACAGAACTTTATG
** *
7599302 CT-T-TTGACAGTTAAC-TAATG
1 CTATGGGGACAG--AACTTTATG
7599322 CTATGGGGACAGAACTTTATG
1 CTATGGGGACAGAACTTTATG
7599343 CT
1 CT
7599345 TAATATAATG
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
19 5 0.16
20 10 0.31
21 12 0.38
22 5 0.16
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (21 bp):
CTATGGGGACAGAACTTTATG
Found at i:7603893 original size:12 final size:12
Alignment explanation
Indices: 7603876--7603902 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7603866 GCAGAAACAA
7603876 AAACTAAAAAAT
1 AAACTAAAAAAT
7603888 AAACTAAAAAAT
1 AAACTAAAAAAT
7603900 AAA
1 AAA
7603903 AGAAAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACTAAAAAAT
Found at i:7604818 original size:88 final size:87
Alignment explanation
Indices: 7604726--7604899 Score: 217
Period size: 88 Copynumber: 2.0 Consensus size: 87
7604716 TTTTAAGTCT
* * * * *
7604726 TTTTTTTACATTTATTTAGGTACTTAAACTTTCAAAATTCATAAAAAAAGTCTCTTAAA-TCTTT
1 TTTTTTTACACTTAATTAGGTACTTAAACTTTCAAAATGCAT--AAAAAGACTCTGAAACT-TTT
*
7604790 TCAAA-AAAAATAATTAAATCCCTA
63 TCAAATAAAAATAATTAAACCCCTA
* * *
7604814 TTTTTTTTCACTTAATTGGGTACTTGAACTTTCAAAATGCATAAAAAGACTCTGAAACTTTTTCA
1 TTTTTTTACACTTAATTAGGTACTTAAACTTTCAAAATGCATAAAAAGACTCTGAAACTTTTTCA
*
7604879 AATAAAAGTAATTAAACCCCT
66 AATAAAAATAATTAAACCCCT
7604900 GCTTTTATTA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
86 21 0.28
87 17 0.23
88 36 0.49
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (87 bp):
TTTTTTTACACTTAATTAGGTACTTAAACTTTCAAAATGCATAAAAAGACTCTGAAACTTTTTCA
AATAAAAATAATTAAACCCCTA
Found at i:7605117 original size:59 final size:59
Alignment explanation
Indices: 7605007--7605132 Score: 148
Period size: 59 Copynumber: 2.1 Consensus size: 59
7604997 ATAAAAATAT
* * *
7605007 ATATACAAAAAATTGTAAAATTTTATAAAAATCGTAAAAAAAAGTATAAAATATACAGAA
1 ATATA-AAAAAATTATAAAATTTTATAAAAATCGTAAAAAAAAGTACAAAATATAAAGAA
* * * *
7605067 ATATAAAAAAATTATAAAATTTTAT-CAAGTCGTAAGAAAATTA-TACAAAATATAAAGAT
1 ATATAAAAAAATTATAAAATTTTATAAAAATCGTAA-AAAA-AAGTACAAAATATAAAGAA
7605126 ATATAAA
1 ATATAAA
7605133 TTTTGTAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
58 8 0.14
59 43 0.75
60 6 0.11
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29
Consensus pattern (59 bp):
ATATAAAAAAATTATAAAATTTTATAAAAATCGTAAAAAAAAGTACAAAATATAAAGAA
Found at i:7605158 original size:35 final size:35
Alignment explanation
Indices: 7605118--7605188 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
7605108 TATACAAAAT
* *
7605118 ATAAAGATATATAAATTTTGTAAAAAA-ATTTATAA
1 ATAAAGAAAAATAAATTTTGTAAAAAAGA-TTATAA
7605153 ATAAAGAAAAATAAATTTTGTAAAAAAGATTATAA
1 ATAAAGAAAAATAAATTTTGTAAAAAAGATTATAA
7605188 A
1 A
7605189 AAAATCATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 32 0.97
36 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (35 bp):
ATAAAGAAAAATAAATTTTGTAAAAAAGATTATAA
Found at i:7605252 original size:7 final size:8
Alignment explanation
Indices: 7605235--7605260 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7605225 ATAACTTTAA
7605235 TTTATTTT
1 TTTATTTT
7605243 TTTATTTT
1 TTTATTTT
7605251 TTTATTTT
1 TTTATTTT
7605259 TT
1 TT
7605261 GCCACATATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:7605390 original size:34 final size:34
Alignment explanation
Indices: 7605324--7605392 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
7605314 AGGGTCATTA
* * *
7605324 ATTTTTTATGATTTTTATAAAATTTTATATTTTT
1 ATTTTTTACGATTTTTATAAAAATCTATATTTTT
*
7605358 ATTTTTTACGGTTTTTATAAAAAATCTA-ATTTTT
1 ATTTTTTACGATTTTTAT-AAAAATCTATATTTTT
7605392 A
1 A
7605393 ATAAATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 23 0.77
35 7 0.23
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (34 bp):
ATTTTTTACGATTTTTATAAAAATCTATATTTTT
Found at i:7605417 original size:59 final size:59
Alignment explanation
Indices: 7605346--7605478 Score: 266
Period size: 59 Copynumber: 2.3 Consensus size: 59
7605336 TTTTATAAAA
7605346 TTTTATATTTTTATTTTTTACGGTTTTTATAAAAAATCTAATTTTTAATAAATTTTAAT
1 TTTTATATTTTTATTTTTTACGGTTTTTATAAAAAATCTAATTTTTAATAAATTTTAAT
7605405 TTTTATATTTTTATTTTTTACGGTTTTTATAAAAAATCTAATTTTTAATAAATTTTAAT
1 TTTTATATTTTTATTTTTTACGGTTTTTATAAAAAATCTAATTTTTAATAAATTTTAAT
7605464 TTTTATATTTTTATT
1 TTTTATATTTTTATT
7605479 AAAATTTAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (59 bp):
TTTTATATTTTTATTTTTTACGGTTTTTATAAAAAATCTAATTTTTAATAAATTTTAAT
Found at i:7609734 original size:14 final size:14
Alignment explanation
Indices: 7609707--7609749 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
7609697 ACTACAGCGG
**
7609707 CCTAAATCCCAAAC
1 CCTAAATCTTAAAC
7609721 CCTAAATCTTAAAC
1 CCTAAATCTTAAAC
*
7609735 CCCAAACTCTTAAAC
1 CCTAAA-TCTTAAAC
7609750 TAAAAAACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.21
Consensus pattern (14 bp):
CCTAAATCTTAAAC
Found at i:7610274 original size:115 final size:115
Alignment explanation
Indices: 7610060--7611015 Score: 1087
Period size: 115 Copynumber: 8.4 Consensus size: 115
7610050 ATGCATGGTT
* * * *
7610060 AAGACCACAACTCTGCGTTTTGGTTAAGATATTTTCCGGCGCTTCTCAAAAAGCGCCGCTAATAC
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATAC
* * *
7610125 TATGCTTTAGCGGCGTTTTCTCGTGAA-CGCCACTAATTCCAGTATACATC
66 TATGCTTTAGCGGCGTTTTCCCAT-AAGCGCCACTAATTCTAGTATACATC
* ** * * *
7610175 AATACTTAAACGCTGCGTTTTGGTTAATATATTTTGCGGCGCTTCTCAAAATGTGCCGCTAATAG
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATAC
* * * *
7610240 TATGCTTTAGCGGCGTGTTCCCATAAGAGCCACTAATTCTAATATACCTC
66 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
** * *
7610290 AAGACC-AAACTTTGCGTTTTGG-TGAGCATATTTTGCGGCGCTTTTTGC-AAA-GCGCCGCTAA
1 AAGACCAAAACGCTGCGTTTTGGTTAAG-ATATTTTGCGGCGC-TTCT-CAAAATGCGCCGCTAA
* * *
7610351 TACTATGATTTAGCGGCGTTTT-CCAGTATGCGCCACTAATTATAGTATACATC
63 TACTATGCTTTAGCGGCGTTTTCCCA-TAAGCGCCACTAATTCTAGTATACATC
* * * * *
7610404 AAGACCAAAACGCTACGTTTTGGTTAAGAAATTTTGCGGCGCTTCTCCAAACGCGCCGCTAATAG
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATAC
* ** * * *
7610469 TATGCGTTAGCGGCGTTTTCCC-TTTGCGCTACTAATTATAGTATACCTC
66 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
* * *
7610518 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAA-ACGCCTCTAATA
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCA-AAATGCGCCGCTAATA
* * * * *
7610581 TTATGCTTTAGCGGCGTTTTCCCGTAAGCGCCACTAATTGTAATATACACC
65 CTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
* * * * *
7610632 AAGACCAAAACGGTGCGTTTTGGTTAGGATATTTTGCGGCGCTTCTAAAAAAGCGCCACTAATAC
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATAC
* * * *
7610697 TATGCTTTAGCGACGTTTTCTCTTGAA-CGCCACTAATTCCAGTATACATC
66 TATGCTTTAGCGGCGTTTTCCCAT-AAGCGCCACTAATTCTAGTATACATC
** * *
7610747 AAGACTTAAACGCTGCGTTTTGGTTAATATATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATAG
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATAC
* * * *
7610812 TATGCTTTAGCGGCGTTTT-TCGTAAGCGCCACTAATTCTAATATACAGC
66 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
* * * * *
7610861 GAGACCAAAACGATGCGTTTTCGTTAAGAT-TTTTGAGGCGCTT-TCCACAATGCGCCGCTAATA
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCT-CAAAATGCGCCGCTAATA
* *
7610924 CT-TGCTTTAGCGGCGTTTTCTCATAATCGCCACTAATTCTAGTATACATC
65 CTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
* * * *
7610974 AAAACCAAAACGATGCGTTTTGGTCT-TGAGATTTTGCGGCGC
1 AAGACCAAAACGCTGCGTTTTGGT-TAAGATATTTTGCGGCGC
7611016 AGGATGGTAA
Statistics
Matches: 714, Mismatches: 107, Indels: 41
0.83 0.12 0.05
Matches are distributed among these distances:
112 18 0.03
113 155 0.22
114 212 0.30
115 321 0.45
116 8 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (115 bp):
AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATAC
TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
Found at i:7610481 original size:229 final size:227
Alignment explanation
Indices: 7610060--7611015 Score: 1107
Period size: 229 Copynumber: 4.2 Consensus size: 227
7610050 ATGCATGGTT
* *
7610060 AAGACCACAACTCTGCGTTTTGGTTAAGATATTTTCCGGCGCTTCTCAAAAAGCGCCGCTAATAC
1 AAGACCA-AACTCTGCGTTTTGG-TAAGATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATAC
* * * **
7610125 TATGCTTTAGCGGCGTTTTCTCGTGAA-CGCCACTAATTCCAGTATACATCAATACTTAAACGCT
64 TATGCTTTAGCGGCGTTTTC-CGT-AAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCT
* * * *
7610189 GCGTTTTGGTTAATATATTTTGCGGCGCTTCTCAAAATGTGCCGCTAATAGTATGCTTTAGCGGC
127 GCGTTTTGGTTAAGAAATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATACTATGCTTTAGCGGC
* * * *
7610254 GTGTTCCCATAAGAGCCACTAATTCTAATATACCTC
192 GTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
* * * **
7610290 AAGACCAAACTTTGCGTTTTGGTGAGCATATTTTGCGGCGCTTTTTGCAAAGCGCCGCTAATACT
1 AAGACCAAACTCTGCGTTTTGGTAAG-ATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATACT
* * * * *
7610355 ATGATTTAGCGGCGTTTTCCAGTATGCGCCACTAATTATAGTATACATCAAGACCAAAACGCTAC
65 ATGCTTTAGCGGCGTTTTCC-GTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
* * * *
7610420 GTTTTGGTTAAGAAATTTTGCGGCGCTTCTCCAAACGCGCCGCTAATAGTATGCGTTAGCGGCGT
129 GTTTTGGTTAAGAAATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATACTATGCTTTAGCGGCGT
** * * *
7610485 TTTCCC-TTTGCGCTACTAATTATAGTATACCTC
194 TTTCCCATAAGCGCCACTAATTCTAGTATACATC
* * *
7610518 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCTCTAATATT
1 AAGACCAAACTCTGCGTTTTGG-TAAGATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATACT
* * *
7610583 ATGCTTTAGCGGCGTTTTCCCGTAAGCGCCACTAATTGTAATATACACCAAGACCAAAACGGTGC
65 ATGCTTTAGCGGCGTTTT-CCGTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
* * * * * *
7610648 GTTTTGGTTAGGATATTTTGCGGCGCTTCTAAAAAAGCGCCACTAATACTATGCTTTAGCGACGT
129 GTTTTGGTTAAGAAATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATACTATGCTTTAGCGGCGT
* * *
7610713 TTTCTCTTGAA-CGCCACTAATTCCAGTATACATC
194 TTTCCCAT-AAGCGCCACTAATTCTAGTATACATC
* * *
7610747 AAGACTTAAACGCTGCGTTTTGGTTAATATATTTTGCGGCGCTTCTCA-AAATGCGCCGCTAATA
1 AAGAC-CAAACTCTGCGTTTTGG-TAAGATATTTTGCGGCGCTTCTCACAAA-GCGCCGCTAATA
* * * * *
7610811 GTATGCTTTAGCGGCGTTTTTCGTAAGCGCCACTAATTCTAATATACAGCGAGACCAAAACGATG
63 CTATGCTTTAGCGGCGTTTTCCGTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTG
* * * *
7610876 CGTTTTCGTTAAG-ATTTTTGAGGCGCTT-TCCACAATGCGCCGCTAATACT-TGCTTTAGCGGC
128 CGTTTTGGTTAAGAAATTTTGCGGCGCTTCT-CAAAATGCGCCGCTAATACTATGCTTTAGCGGC
* *
7610938 GTTTTCTCATAATCGCCACTAATTCTAGTATACATC
192 GTTTTCCCATAAGCGCCACTAATTCTAGTATACATC
* ** ** *
7610974 AAAACCAAAACGATGCGTTTTGGTCTTGAGATTTTGCGGCGC
1 AAGACC-AAACTCTGCGTTTTGGT-AAGATATTTTGCGGCGC
7611016 AGGATGGTAA
Statistics
Matches: 624, Mismatches: 89, Indels: 29
0.84 0.12 0.04
Matches are distributed among these distances:
226 3 0.00
227 75 0.12
228 223 0.36
229 248 0.40
230 75 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (227 bp):
AAGACCAAACTCTGCGTTTTGGTAAGATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATACTA
TGCTTTAGCGGCGTTTTCCGTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCGT
TTTGGTTAAGAAATTTTGCGGCGCTTCTCAAAATGCGCCGCTAATACTATGCTTTAGCGGCGTTT
TCCCATAAGCGCCACTAATTCTAGTATACATC
Found at i:7610993 original size:457 final size:457
Alignment explanation
Indices: 7610073--7611015 Score: 1170
Period size: 457 Copynumber: 2.1 Consensus size: 457
7610063 ACCACAACTC
*
7610073 TGCGTTTTGGTTAAGATATTTTCCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
1 TGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
* * * * ** *
7610138 CGTTTTCTCGTGAACGCCACTAATTCCAGTATACATCAATACTTAAACGCTGCGTTTTGGTTAAT
66 CGTTTTCCCGTGAACGCCACTAATTCCAATATACACCAAGACCAAAACGCTGCGTTTTGGTTAAG
* * * * * *
7610203 ATATTTTGCGGCGCTTCTCAAAATGTGCCGCTAATAGTATGCTTTAGCGGCGTGTTCCCATAAGA
131 ATATTTTGCGGCGCTTCTAAAAAAGCGCCACTAATACTATGCTTTAGCGACGTGTTCCCATAAGA
* * ** *
7610268 GCCACTAATTCTAATATACCTCAAGACCAAACTTTGCGTTTTGGTGAGCATATTTTGCGGCGCTT
196 GCCACTAATTCCAATATACATCAAGACCAAACGCTGCGTTTTGGTGAACATATTTTGCGGCGCTT
* * *
7610333 TTTGCAAAGCGCCGCTAATACTATGATTTAGCGGCGTTTTCCAGTATGCGCCACTAATTATAGTA
261 TCTGCAAAGCGCCGCTAATACTATGATTTAGCGGCGTTTTCCAGTAAGCGCCACTAATTATAATA
* * * *
7610398 TACATCAAGACCAAAACGCTACGTTTTGGTTAAGAAATTTTGCGGCGCTTCTCCAAACGCGCCGC
326 TACAGCAAGACCAAAACGATACGTTTTCGTTAAGAAATTTTGAGGCGCTTCTCCAAACGCGCCGC
* * * * * *
7610463 TAATAGTATGCGTTAGCGGCGTTTTCCCTTTGCGCTACTAATTATAGTATACCTCAAGACCAAAC
391 TAATACTATGCGTTAGCGGCGTTTTCCATATGCGCCACTAATTATAGTATACATCAAAACCAAAC
**
7610528 TC
456 GA
* *
7610530 TGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAA-CGCCTCTAATATTATGCTTTAGCG
1 TGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCA-AAAAGCGCCGCTAATACTATGCTTTAGCG
** *
7610594 GCGTTTTCCCGT-AAGCGCCACTAATTGTAATATACACCAAGACCAAAACGGTGCGTTTTGGTTA
65 GCGTTTTCCCGTGAA-CGCCACTAATTCCAATATACACCAAGACCAAAACGCTGCGTTTTGGTTA
* * * *
7610658 GGATATTTTGCGGCGCTTCTAAAAAAGCGCCACTAATACTATGCTTTAGCGACGTTTTCTCTTGA
129 AGATATTTTGCGGCGCTTCTAAAAAAGCGCCACTAATACTATGCTTTAGCGACGTGTTCCCAT-A
* * * * *
7610723 A-CGCCACTAATTCCAGTATACATCAAGACTTAAACGCTGCGTTTTGGTTAATATATTTTGCGGC
193 AGAGCCACTAATTCCAATATACATCAAGAC-CAAACGCTGCGTTTTGGTGAACATATTTTGCGGC
* * *
7610787 GC-TTCT-CAAAATGCGCCGCTAATAGTATGCTTTAGCGGCGTTTTTC-GTAAGCGCCACTAATT
257 GCTTTCTGC-AAA-GCGCCGCTAATACTATGATTTAGCGGCGTTTTCCAGTAAGCGCCACTAATT
* * * * *
7610849 CTAATATACAGCGAGACCAAAACGATGCGTTTTCGTTAAG-ATTTTTGAGGCGCTT-TCCACAAT
320 ATAATATACAGCAAGACCAAAACGATACGTTTTCGTTAAGAAATTTTGAGGCGCTTCTCCA-AAC
* *
7610912 GCGCCGCTAATACT-TGCTTTAGCGGCGTTTTCTCATAAT-CGCCACTAATTCTAGTATACATCA
384 GCGCCGCTAATACTATGCGTTAGCGGCGTTTTC-CAT-ATGCGCCACTAATTATAGTATACATCA
7610975 AAACCAAAACGA
447 AAACC-AAACGA
* *
7610987 TGCGTTTTGGTCT-TGAGATTTTGCGGCGC
1 TGCGTTTTGGT-TAAGATATTTTGCGGCGC
7611016 AGGATGGTAA
Statistics
Matches: 415, Mismatches: 60, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
455 21 0.05
456 58 0.14
457 268 0.65
458 68 0.16
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (457 bp):
TGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
CGTTTTCCCGTGAACGCCACTAATTCCAATATACACCAAGACCAAAACGCTGCGTTTTGGTTAAG
ATATTTTGCGGCGCTTCTAAAAAAGCGCCACTAATACTATGCTTTAGCGACGTGTTCCCATAAGA
GCCACTAATTCCAATATACATCAAGACCAAACGCTGCGTTTTGGTGAACATATTTTGCGGCGCTT
TCTGCAAAGCGCCGCTAATACTATGATTTAGCGGCGTTTTCCAGTAAGCGCCACTAATTATAATA
TACAGCAAGACCAAAACGATACGTTTTCGTTAAGAAATTTTGAGGCGCTTCTCCAAACGCGCCGC
TAATACTATGCGTTAGCGGCGTTTTCCATATGCGCCACTAATTATAGTATACATCAAAACCAAAC
GA
Found at i:7622124 original size:467 final size:468
Alignment explanation
Indices: 7621241--7622175 Score: 1863
Period size: 467 Copynumber: 2.0 Consensus size: 468
7621231 TTCATGCATT
7621241 TAATTTTTATTTATATATTAAACAAAAATATTTAAATATATAAAATAATGTATCAATGTTTTATT
1 TAATTTTTATTTATATATTAAACAAAAATATTTAAATATATAAAATAATGTATCAATGTTTTATT
7621306 AGTTTTGATATTGTAAGTTCCATTCCATACGGTTTCTAACAATAATTTTTTTCCTCATTATAATT
66 AGTTTTGATATTGTAAGTTCCATTCCATACGGTTTCTAACAATAATTTTTTTCCTCATTATAATT
7621371 AACCTTACTAATGTAAAATTTGAATACAAAAACAAGAAATTAAACCAAAATGGGGCTTCTATAGC
131 AACCTTACTAATGTAAAATTTGAATACAAAAACAAGAAATTAAACCAAAATGGGGCTTCTATAGC
7621436 TATACATAGTCAATGAAAATACATAGGGTTGGATTGAGTTTAGTCCACAAATGCAGGCAAAACAT
196 TATACATAGTCAATGAAAATACATAGGGTTGGATTGAGTTTAGTCCACAAATGCAGGCAAAACAT
7621501 CTATTCAAAAACCTGCTAAACATCCCTTTTTCATTTAAAATATGAAATTGGAGTCGTACATTTCA
261 CTATTCAAAAACCTGCTAAACATCCCTTTTTCATTTAAAATATGAAATTGGAGTCGTACATTTCA
7621566 CACATGACTAATTCAACAAATATAAACATATATACCTATATCTATACATCTATATATAGATATAG
326 CACATGACTAATTCAACAAATATAAACATATATACCTATATCTATACATCTATATATAGATATAG
7621631 ATATCTCCAGAAACCCTCCAAATGTGAAGTCTGAAATTGTTACATAAATACAAAAGGCAAACAAA
391 ATATCTCCAGAAACCCTCCAAATGTGAAGTCTGAAATTGTTACATAAATACAAAAGGCAAACAAA
7621696 AAACAATGCCTTG
456 AAACAATGCCTTG
7621709 TAATTTTTA-TTATATATTAAACAAAAATATTTAAATATATAAAATAATGTATCAATGTTTTATT
1 TAATTTTTATTTATATATTAAACAAAAATATTTAAATATATAAAATAATGTATCAATGTTTTATT
7621773 AGTTTTGATATTGTAAGTTCCATTCCATACGGTTTCTAACAATAATTTTTTTCCTCATTATAATT
66 AGTTTTGATATTGTAAGTTCCATTCCATACGGTTTCTAACAATAATTTTTTTCCTCATTATAATT
7621838 AACCTTACTAATGTAAAATTTGAATACAAAAACAAGAAATTAAACCAAAATGGGGCTTCTATAGC
131 AACCTTACTAATGTAAAATTTGAATACAAAAACAAGAAATTAAACCAAAATGGGGCTTCTATAGC
7621903 TATACATAGTCAATGAAAATACATAGGGTTGGATTGAGTTTAGTCCACAAATGCAGGCAAAACAT
196 TATACATAGTCAATGAAAATACATAGGGTTGGATTGAGTTTAGTCCACAAATGCAGGCAAAACAT
7621968 CTATTCAAAAACCTGCTAAACATCCCTTTTTCATTTAAAATATGAAATTGGAGTCGTACATTTCA
261 CTATTCAAAAACCTGCTAAACATCCCTTTTTCATTTAAAATATGAAATTGGAGTCGTACATTTCA
7622033 CACATGACTAATTCAACAAATATAAACATATATACCTATATCTATACATCTATATATAGATATAG
326 CACATGACTAATTCAACAAATATAAACATATATACCTATATCTATACATCTATATATAGATATAG
7622098 ATATCTCCAGAAACCCTCCAAATGTGAAGTCTGAAATTGTTACATAAATACAAAAGGCAAACAAA
391 ATATCTCCAGAAACCCTCCAAATGTGAAGTCTGAAATTGTTACATAAATACAAAAGGCAAACAAA
7622163 AAACAATGCCTTG
456 AAACAATGCCTTG
7622176 GTGTTGATTC
Statistics
Matches: 467, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
467 458 0.98
468 9 0.02
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.33
Consensus pattern (468 bp):
TAATTTTTATTTATATATTAAACAAAAATATTTAAATATATAAAATAATGTATCAATGTTTTATT
AGTTTTGATATTGTAAGTTCCATTCCATACGGTTTCTAACAATAATTTTTTTCCTCATTATAATT
AACCTTACTAATGTAAAATTTGAATACAAAAACAAGAAATTAAACCAAAATGGGGCTTCTATAGC
TATACATAGTCAATGAAAATACATAGGGTTGGATTGAGTTTAGTCCACAAATGCAGGCAAAACAT
CTATTCAAAAACCTGCTAAACATCCCTTTTTCATTTAAAATATGAAATTGGAGTCGTACATTTCA
CACATGACTAATTCAACAAATATAAACATATATACCTATATCTATACATCTATATATAGATATAG
ATATCTCCAGAAACCCTCCAAATGTGAAGTCTGAAATTGTTACATAAATACAAAAGGCAAACAAA
AAACAATGCCTTG
Found at i:7623382 original size:2 final size:2
Alignment explanation
Indices: 7623375--7623419 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7623365 ATTTTCAAAA
7623375 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7623417 AT A
1 AT A
7623420 AAATAAAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7624892 original size:30 final size:30
Alignment explanation
Indices: 7624853--7624909 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
7624843 TTTTATAAAT
7624853 AATTAATATTT-AT-TGCTTAAAAATATTTAA
1 AATTAATATTTCATATG-TT-AAAATATTTAA
*
7624883 AATTTATATTTCATATGTTAAAATATT
1 AATTAATATTTCATATGTTAAAATATT
7624910 AACAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATGTTAAAATATTTAA
Found at i:7649756 original size:2 final size:2
Alignment explanation
Indices: 7649749--7649776 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7649739 TGCTAAGCAA
7649749 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7649777 TATTCCACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7653594 original size:13 final size:13
Alignment explanation
Indices: 7653564--7653606 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
7653554 TTTAATTATC
7653564 TATTTTTTATA--
1 TATTTTTTATATT
* *
7653575 TAATTTTTATTTT
1 TATTTTTTATATT
7653588 TATTTTTTATATT
1 TATTTTTTATATT
7653601 TATTTT
1 TATTTT
7653607 AATAAAATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 9 0.35
13 17 0.65
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTTTTATATT
Found at i:7655271 original size:213 final size:213
Alignment explanation
Indices: 7655025--7655450 Score: 843
Period size: 213 Copynumber: 2.0 Consensus size: 213
7655015 TTTATTACTA
7655025 TGTTAATAAATAAACAGTAACTTACAAATTTTTTTTATTTGAATTGATTTTTACCACCTTGGTGC
1 TGTTAATAAATAAACAGTAACTTACAAATTTTTTTTATTTGAATTGATTTTTACCACCTTGGTGC
7655090 GCTAAGTGACATCAAATTCCAGTTTGATATGTATTTAAAATACGATAAAATAATATTTAAAAAAT
66 GCTAAGTGACATCAAATTCCAGTTTGATATGTATTTAAAATACGATAAAATAATATTTAAAAAAT
7655155 TTAAAATAATTGAAAGTGAAATTTGATAAAAGTATTAACAATATGAGACATAAAAAATTTTATTT
131 TTAAAATAATTGAAAGTGAAATTTGATAAAAGTATTAACAATATGAGACATAAAAAATTTTATTT
*
7655220 TTTTCTTTAAATTTAATT
196 TTTTCTTGAAATTTAATT
7655238 TGTTAATAAATAAACAGTAACTTACAAATTTTTTTTATTTGAATTGATTTTTACCACCTTGGTGC
1 TGTTAATAAATAAACAGTAACTTACAAATTTTTTTTATTTGAATTGATTTTTACCACCTTGGTGC
7655303 GCTAAGTGACATCAAATTCCAGTTTGATATGTATTTAAAATACGATAAAATAATATTTAAAAAAT
66 GCTAAGTGACATCAAATTCCAGTTTGATATGTATTTAAAATACGATAAAATAATATTTAAAAAAT
7655368 TTAAAATAATTGAAAGTGAAATTTGATAAAAGTATTAACAATATGAGACATAAAAAATTTTATTT
131 TTAAAATAATTGAAAGTGAAATTTGATAAAAGTATTAACAATATGAGACATAAAAAATTTTATTT
7655433 TTTTCTTGAAATTTAATT
196 TTTTCTTGAAATTTAATT
7655451 ACTAAAAATA
Statistics
Matches: 212, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 212 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (213 bp):
TGTTAATAAATAAACAGTAACTTACAAATTTTTTTTATTTGAATTGATTTTTACCACCTTGGTGC
GCTAAGTGACATCAAATTCCAGTTTGATATGTATTTAAAATACGATAAAATAATATTTAAAAAAT
TTAAAATAATTGAAAGTGAAATTTGATAAAAGTATTAACAATATGAGACATAAAAAATTTTATTT
TTTTCTTGAAATTTAATT
Found at i:7655838 original size:21 final size:21
Alignment explanation
Indices: 7655795--7655838 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7655785 ACTTTGGACT
* **
7655795 AAAAATGAAAATAATTCCCTA
1 AAAAATGAAAATAATACAATA
*
7655816 AAAAATGAAAATAATAGAATA
1 AAAAATGAAAATAATACAATA
7655837 AA
1 AA
7655839 TTTGATAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (21 bp):
AAAAATGAAAATAATACAATA
Found at i:7656460 original size:12 final size:12
Alignment explanation
Indices: 7656428--7656452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7656418 TGAATATACA
7656428 AAAAATTAAATT
1 AAAAATTAAATT
7656440 AAAAATTAAATT
1 AAAAATTAAATT
7656452 A
1 A
7656453 TAATTTAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAATTAAATT
Found at i:7658087 original size:30 final size:31
Alignment explanation
Indices: 7658020--7658095 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 31
7658010 GAATTTATAT
* *
7658020 ATAT-AATTTTATTATTTTTAAAAGGATTAA
1 ATATGAATTTTATTATATTTAAAAGGATCAA
* *
7658050 ATA-GAATTTTTTTATATTTAAGAGGA-CAA
1 ATATGAATTTTATTATATTTAAAAGGATCAA
7658079 ATATGAATTATTATTAT
1 ATATGAATT-TTATTAT
7658096 TTGGTACAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
29 5 0.13
30 27 0.71
31 6 0.16
ACGTcount: A:0.42, C:0.01, G:0.09, T:0.47
Consensus pattern (31 bp):
ATATGAATTTTATTATATTTAAAAGGATCAA
Found at i:7659026 original size:16 final size:18
Alignment explanation
Indices: 7659005--7659046 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
7658995 CACATATTGA
*
7659005 ATTTTTTATATTA-T-TT
1 ATTTTTTATATAACTATT
*
7659021 ATTTTTAATATAACTATT
1 ATTTTTTATATAACTATT
7659039 ATTTTTTA
1 ATTTTTTA
7659047 ATTCGTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 11 0.52
17 1 0.05
18 9 0.43
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTTTATATAACTATT
Found at i:7659875 original size:25 final size:26
Alignment explanation
Indices: 7659846--7659897 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
7659836 ATTTAATTCG
*
7659846 ATTCGACTCAAATTTCATTT-ACTCA
1 ATTCGACTCAAATTTAATTTCACTCA
*
7659871 ATTCGACTCGAATTTAATTTCACTCA
1 ATTCGACTCAAATTTAATTTCACTCA
7659897 A
1 A
7659898 CTTGATTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.38
Consensus pattern (26 bp):
ATTCGACTCAAATTTAATTTCACTCA
Found at i:7663440 original size:168 final size:169
Alignment explanation
Indices: 7663247--7663584 Score: 669
Period size: 168 Copynumber: 2.0 Consensus size: 169
7663237 TTATCATATC
7663247 GTTCTAAAATATTATATATATTAATATTTCTTAAATAATAATAAAATACATCAAATTTAACCTAC
1 GTTCTAAAATATTATATATATTAATATTTCTTAAATAATAATAAAATACATCAAATTTAACCTAC
7663312 ATAATTTATATGAATAAGATATAAACTATATCTTAAATCATTTCTATTGAATGACTTGTTACTCA
66 ATAATTTATATGAATAAGATATAAACTATATCTTAAATCATTTCTATTGAATGACTTGTTACTCA
7663377 GATTCAGAACGTAATAGTGAGTGGATTAGTGGAGTTTGA
131 GATTCAGAACGTAATAGTGAGTGGATTAGTGGAGTTTGA
7663416 GTTCTAAAAT-TTATATATATTAATATTTCTTAAATAATAATAAAATACATCAAATTTAACCTAC
1 GTTCTAAAATATTATATATATTAATATTTCTTAAATAATAATAAAATACATCAAATTTAACCTAC
7663480 ATAATTTATATGAATAAGATATAAACTATATCTTAAATCATTTCTATTGAATGACTTGTTACTCA
66 ATAATTTATATGAATAAGATATAAACTATATCTTAAATCATTTCTATTGAATGACTTGTTACTCA
7663545 GATTCAGAACGTAATAGTGAGTGGATTAGTGGAGTTTGA
131 GATTCAGAACGTAATAGTGAGTGGATTAGTGGAGTTTGA
7663584 G
1 G
7663585 GTAATGAATA
Statistics
Matches: 169, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
168 159 0.94
169 10 0.06
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (169 bp):
GTTCTAAAATATTATATATATTAATATTTCTTAAATAATAATAAAATACATCAAATTTAACCTAC
ATAATTTATATGAATAAGATATAAACTATATCTTAAATCATTTCTATTGAATGACTTGTTACTCA
GATTCAGAACGTAATAGTGAGTGGATTAGTGGAGTTTGA
Found at i:7673966 original size:29 final size:29
Alignment explanation
Indices: 7673924--7673988 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
7673914 TAATTTGTGA
*
7673924 AAATTAATTTAAAA-TAATAAATTATGTA-T
1 AAATT-ATATAAAATTAA-AAATTATGTACT
*
7673953 ATAATTATATAAAATTAAAATTTATGTACT
1 A-AATTATATAAAATTAAAAATTATGTACT
7673983 AAATTA
1 AAATTA
7673989 ATTTTTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
29 22 0.71
30 9 0.29
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.42
Consensus pattern (29 bp):
AAATTATATAAAATTAAAAATTATGTACT
Found at i:7675875 original size:20 final size:20
Alignment explanation
Indices: 7675850--7675889 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7675840 TTCACATCAC
7675850 AGTCTGTGTCTCCAGTGAGT
1 AGTCTGTGTCTCCAGTGAGT
7675870 AGTCTGTGTCTCCAGTGAGT
1 AGTCTGTGTCTCCAGTGAGT
7675890 GATTGTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.20, G:0.30, T:0.35
Consensus pattern (20 bp):
AGTCTGTGTCTCCAGTGAGT
Done.