Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 23 of 135
Found at i:9158908 original size:38 final size:38
Alignment explanation
Indices: 9158857--9158932 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
9158847 TACAGAACAT
9158857 CTTGTTGTTTTAGATTTAAAACTGGTTGTTTGCTTGAA
1 CTTGTTGTTTTAGATTTAAAACTGGTTGTTTGCTTGAA
9158895 CTTGTTGTTTTAGATTTAAAACTGGTTGTTTGCTTGAA
1 CTTGTTGTTTTAGATTTAAAACTGGTTGTTTGCTTGAA
9158933 GTAGTCAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.08, G:0.21, T:0.50
Consensus pattern (38 bp):
CTTGTTGTTTTAGATTTAAAACTGGTTGTTTGCTTGAA
Found at i:9162419 original size:29 final size:29
Alignment explanation
Indices: 9162377--9162435 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
9162367 CACACTTGTC
* *
9162377 TATACATAAATTTTGTTGTTAATAAATAA
1 TATACATAAATTTTGATGTGAATAAATAA
*
9162406 TATATATAAATTTTGATGTGAATAAATAA
1 TATACATAAATTTTGATGTGAATAAATAA
9162435 T
1 T
9162436 TGAAGCATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (29 bp):
TATACATAAATTTTGATGTGAATAAATAA
Found at i:9163078 original size:29 final size:28
Alignment explanation
Indices: 9163017--9163099 Score: 100
Period size: 29 Copynumber: 3.0 Consensus size: 28
9163007 TTTAGGGAAA
*
9163017 AGAAAAGAAAAG-ATAGATTGGGATTAAG
1 AGAAAA-AAAAGAATCGATTGGGATTAAG
9163045 -GAAAAAAAAGAATCGATTGGGATTAAGG
1 AGAAAAAAAAGAATCGATTGGGATTAA-G
*
9163073 AGAAAAAAGAA-AATCGATTAGGATTAA
1 AGAAAAAA-AAGAATCGATTGGGATTAA
9163100 TATTTTAGGG
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
26 5 0.10
27 19 0.39
28 1 0.02
29 22 0.45
30 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.18
Consensus pattern (28 bp):
AGAAAAAAAAGAATCGATTGGGATTAAG
Found at i:9163083 original size:27 final size:27
Alignment explanation
Indices: 9163018--9163099 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
9163008 TTAGGGAAAA
*
9163018 GAAAAGAAAAG-ATAGATTGGGATTAAG
1 GAAAA-AAAAGAATCGATTGGGATTAAG
9163045 GAAAAAAAAGAATCGATTGGGATTAAG
1 GAAAAAAAAGAATCGATTGGGATTAAG
* *
9163072 GAGAAAAAAGAAAATCGATTAGGATTAA
1 GA-AAAAAA-AGAATCGATTGGGATTAA
9163100 TATTTTAGGG
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 5 0.10
27 22 0.45
28 6 0.12
29 16 0.33
ACGTcount: A:0.54, C:0.02, G:0.26, T:0.18
Consensus pattern (27 bp):
GAAAAAAAAGAATCGATTGGGATTAAG
Found at i:9163812 original size:198 final size:199
Alignment explanation
Indices: 9163470--9163843 Score: 475
Period size: 198 Copynumber: 1.9 Consensus size: 199
9163460 TTTGGTTATT
* * * * * *
9163470 AAAGTGTATGGCAGGTTTGGATTGTTCTAAAGTTATTATCTGCTATGTGCATACATATAGCTTTA
1 AAAGTGTATGACAGATTTGGATTGTTATAAAGATATTATCTGCCATGTGCATACATATAGCCTTA
* * * * * *
9163535 GGAAATAGATAAATTAATTCATATTTTTATGACTACTTATATCAAGCTTCTTTAGGTTCAAATAT
66 GGAAAGAGACAAATCAATTCATATTTTTATGACAACTAATATCAAGCTTATTTAGGTTCAAATAT
* *
9163600 GACAAATAAGTTCCTAATTTTCAAGAACA-TTTTTAAATGCTGATTCAAATATGATTATTGTTTG
131 GACAAATAAGTTCCTAATTGTCAAAAACATTTTTTAAATGCTGATTCAAATATGATTATTGTTTG
9163664 TATC
196 TATC
* * * * *
9163668 AAAGTGTATGACAGATTTGGATTTTTATAAAGATATTGTGTGCCATGTGCATATATATATCCTTA
1 AAAGTGTATGACAGATTTGGATTGTTATAAAGATATTATCTGCCATGTGCATACATATAGCCTTA
* * *
9163733 GGAAAGAGACAAATCAATTCCTATTTTTATGACCAAC-AATATCAAGTTTATTT-GGATTTAAAT
66 GGAAAGAGACAAATCAATTCATATTTTTATGA-CAACTAATATCAAGCTTATTTAGG-TTCAAAT
* * * *
9163796 ATGACAAATCAGTTCCTAGTTGTCAAAAATATTTTTTAAATGTTGATT
129 ATGACAAATAAGTTCCTAATTGTCAAAAACATTTTTTAAATGCTGATT
9163844 ATGATTATTG
Statistics
Matches: 147, Mismatches: 26, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
197 2 0.01
198 127 0.86
199 18 0.12
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (199 bp):
AAAGTGTATGACAGATTTGGATTGTTATAAAGATATTATCTGCCATGTGCATACATATAGCCTTA
GGAAAGAGACAAATCAATTCATATTTTTATGACAACTAATATCAAGCTTATTTAGGTTCAAATAT
GACAAATAAGTTCCTAATTGTCAAAAACATTTTTTAAATGCTGATTCAAATATGATTATTGTTTG
TATC
Found at i:9166487 original size:21 final size:21
Alignment explanation
Indices: 9166463--9166507 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
9166453 CAAGTGGTTG
*
9166463 CCCCAACTCATCAAGAAGCTA
1 CCCCAACTCACCAAGAAGCTA
*
9166484 CCCCAACTTACCAAGAAGCTA
1 CCCCAACTCACCAAGAAGCTA
9166505 CCC
1 CCC
9166508 TAAGAGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.42, G:0.09, T:0.13
Consensus pattern (21 bp):
CCCCAACTCACCAAGAAGCTA
Found at i:9170881 original size:6 final size:6
Alignment explanation
Indices: 9170870--9170910 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
9170860 TATAGAGGCT
* * *
9170870 GAGCCA GAGCCA AAGCCA GAGCCA GAGCCC GAGCCC GAGCC
1 GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCC
9170911 CGAGTGATCG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.29, C:0.39, G:0.32, T:0.00
Consensus pattern (6 bp):
GAGCCA
Found at i:9171406 original size:48 final size:48
Alignment explanation
Indices: 9171350--9171441 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 48
9171340 CAACATTATA
*
9171350 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAAAT
1 ACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAATTAAAT
9171398 ACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAATT
1 ACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAATT
9171442 TTGTAATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (48 bp):
ACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAATTAAAT
Found at i:9171454 original size:62 final size:62
Alignment explanation
Indices: 9171379--9171623 Score: 410
Period size: 62 Copynumber: 4.0 Consensus size: 62
9171369 TGGAACAAAC
9171379 TTTGTAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAAT
1 TTTGTAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAAT
* *
9171441 TTTGTAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAAATTTGAAACATAAAT
1 TTTGTAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAAT
*
9171503 TTTGTAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAA--TTGTAATAT-AAT
1 TTTGTAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAAT
*
9171562 TTTGTTAAT-T-AATTAAATACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAAT
1 TTTG-TAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAAT
9171623 T
1 T
9171624 AGGTACATTG
Statistics
Matches: 175, Mismatches: 4, Indels: 9
0.93 0.02 0.05
Matches are distributed among these distances:
58 36 0.21
59 8 0.05
60 20 0.11
61 4 0.02
62 107 0.61
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.35
Consensus pattern (62 bp):
TTTGTAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTTGTAACATAAAT
Found at i:9171490 original size:35 final size:35
Alignment explanation
Indices: 9171451--9171549 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 35
9171441 TTTGTAATAT
9171451 AAATTAAATACATTACAACATTAAAACTTGGAACA
1 AAATTAAATACATTACAACATTAAAACTTGGAACA
* * *
9171486 AAATTTGAA-ACA-T--AA-ATT-----TTGTAATA
1 AAA-TTAAATACATTACAACATTAAAACTTGGAACA
9171512 TAAATTAAATACATTACAACATTAAAACTTGGAACA
1 -AAATTAAATACATTACAACATTAAAACTTGGAACA
9171548 AA
1 AA
9171550 TTGTAATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 24
0.61 0.08 0.32
Matches are distributed among these distances:
26 10 0.22
27 6 0.13
28 1 0.02
30 2 0.04
31 6 0.13
32 2 0.04
34 1 0.02
35 8 0.17
36 10 0.22
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (35 bp):
AAATTAAATACATTACAACATTAAAACTTGGAACA
Found at i:9178252 original size:6 final size:6
Alignment explanation
Indices: 9178239--9178280 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
9178229 ATTCTATTTG
* *
9178239 AAAATA ACAATA ACAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
9178281 CATTTTCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:9178429 original size:27 final size:27
Alignment explanation
Indices: 9178393--9178458 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
9178383 ACTGGTGCTG
* * *
9178393 CCTATTAGATTGGGGTCACCAATGCCA
1 CCTATCAGATAGGAGTCACCAATGCCA
* * *
9178420 CCTATCAGATAGGAGTCACTAGTGCCG
1 CCTATCAGATAGGAGTCACCAATGCCA
*
9178447 CCTATCAAATAG
1 CCTATCAGATAG
9178459 ACACCATACC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (27 bp):
CCTATCAGATAGGAGTCACCAATGCCA
Found at i:9183927 original size:34 final size:34
Alignment explanation
Indices: 9183884--9184025 Score: 151
Period size: 34 Copynumber: 4.2 Consensus size: 34
9183874 TCTAAGGACT
* * * *
9183884 AAATTGAATAATTCAGAATACACACCCAAAGACC
1 AAATTGAATAAATCAAAAAACACATCCAAAGACC
* ***
9183918 AAATTGAATAAATAAAAAAACACATTTGAAGACC
1 AAATTGAATAAATCAAAAAACACATCCAAAGACC
***
9183952 AAATTGAATAAAT-AAAAAACACATTTGAAGACC
1 AAATTGAATAAATCAAAAAACACATCCAAAGACC
* * *
9183985 AAATTGAATAAATCAAATAACAGATCCAAAGACT
1 AAATTGAATAAATCAAAAAACACATCCAAAGACC
9184019 AAATTGA
1 AAATTGA
9184026 TTAACTTCAG
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
33 33 0.35
34 60 0.65
ACGTcount: A:0.56, C:0.15, G:0.09, T:0.20
Consensus pattern (34 bp):
AAATTGAATAAATCAAAAAACACATCCAAAGACC
Found at i:9183974 original size:33 final size:34
Alignment explanation
Indices: 9183912--9184006 Score: 165
Period size: 33 Copynumber: 2.8 Consensus size: 34
9183902 TACACACCCA
9183912 AAGACCAAATTGAATAAATAAAAAAACACATTTG
1 AAGACCAAATTGAATAAATAAAAAAACACATTTG
9183946 AAGACCAAATTGAATAAAT-AAAAAACACATTTG
1 AAGACCAAATTGAATAAATAAAAAAACACATTTG
* *
9183979 AAGACCAAATTGAATAAATCAAATAACA
1 AAGACCAAATTGAATAAATAAAAAAACA
9184007 GATCCAAAGA
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
33 33 0.56
34 26 0.44
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.20
Consensus pattern (34 bp):
AAGACCAAATTGAATAAATAAAAAAACACATTTG
Found at i:9184425 original size:144 final size:144
Alignment explanation
Indices: 9184183--9184447 Score: 372
Period size: 144 Copynumber: 1.8 Consensus size: 144
9184173 AAATCACGAC
* * * *
9184183 TGGCGGTGGCTATGTCTATCAAAGAGGTCCTCACCTGGCTGAAAGGTTTCTCCTCGTTAATGGAA
1 TGGCGGAGGCTATGTCTATCAAAGAGGTCCGCACCTAGCTGAAAGATTTCTCCTCGTTAATGGAA
* * *
9184248 CCACGACTGGTGATGGCTATGTCTATCAAAGAGGCCCTCACTTGGCTGAAAGGTTTCTCCCCGTT
66 CCACGACTGGAGATGGCTATGTCTATCAAAGAGGCCATCACTTGGCTGAAAAGTTTCTCCCCGTT
9184313 AACGAAACCATGGT
131 AACGAAACCATGGT
* *
9184327 TGGCGGAGGCTATGTCTATTAGAGAGGTCCGCACCTAGCTGAAAGATTTCTTCCT-GTTAATGGA
1 TGGCGGAGGCTATGTCTATCAAAGAGGTCCGCACCTAGCTGAAAGATTTC-TCCTCGTTAATGGA
* * * * *
9184391 ATCACGGCTGGCAGA-GGCTATGTCTATTAGAGAGGCCATCACTTGGTTGAAAAGTTT
65 ACCACGACTGG-AGATGGCTATGTCTATCAAAGAGGCCATCACTTGGCTGAAAAGTTT
9184448 GGGCTTGGAT
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
144 99 0.94
145 6 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (144 bp):
TGGCGGAGGCTATGTCTATCAAAGAGGTCCGCACCTAGCTGAAAGATTTCTCCTCGTTAATGGAA
CCACGACTGGAGATGGCTATGTCTATCAAAGAGGCCATCACTTGGCTGAAAAGTTTCTCCCCGTT
AACGAAACCATGGT
Found at i:9184442 original size:72 final size:73
Alignment explanation
Indices: 9184161--9184417 Score: 297
Period size: 72 Copynumber: 3.6 Consensus size: 73
9184151 ACATTGTTTA
* *
9184161 TCCTCGTTAATGAAATCACGACTGGCGGTGGCTATGTCTATCAAAGAGGTCCTCACCTGGCTGAA
1 TCCTCGTTAATGAAACCACGACTGGCGGAGGCTATGTCTATCAAAGAGGTCCTCACCTGGCTGAA
9184226 AGGTTTC-
66 AGGTTTCT
* * * *
9184233 TCCTCGTTAATGGAACCACGACTGG-TGATGGCTATGTCTATCAAAGAGGCCCTCACTTGGCTGA
1 TCCTCGTTAATGAAACCACGACTGGCGGA-GGCTATGTCTATCAAAGAGGTCCTCACCTGGCTGA
9184297 AAGGTTTC-
65 AAGGTTTCT
* * * ** * * * *
9184305 TCCCCGTTAACGAAACCATGGTTGGCGGAGGCTATGTCTATTAGAGAGGTCCGCACCTAGCTGAA
1 TCCTCGTTAATGAAACCACGACTGGCGGAGGCTATGTCTATCAAAGAGGTCCTCACCTGGCTGAA
*
9184370 AGATTTCT
66 AGGTTTCT
* * * *
9184378 TCCT-GTTAATGGAATCACGGCTGGCAGAGGCTATGTCTAT
1 TCCTCGTTAATGAAACCACGACTGGCGGAGGCTATGTCTAT
9184418 TAGAGAGGCC
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
71 1 0.01
72 149 0.96
73 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (73 bp):
TCCTCGTTAATGAAACCACGACTGGCGGAGGCTATGTCTATCAAAGAGGTCCTCACCTGGCTGAA
AGGTTTCT
Found at i:9200038 original size:3 final size:3
Alignment explanation
Indices: 9200030--9200060 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
9200020 AATTACTATC
9200030 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9200061 GGGTAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:9201967 original size:94 final size:95
Alignment explanation
Indices: 9201790--9202138 Score: 327
Period size: 94 Copynumber: 3.7 Consensus size: 95
9201780 TTAATCCGAT
** * * *
9201790 CCACTGTC-ACTTCAGGGACATAGGATTCATAGCTTC-ATCTAGCTT-CACTACAACTTCAGAAA
1 CCACTG-CAACTTCAGGGGTATAGGATTTATAGCTTCAATCTTG-TTCCACTACAACTTCAGAGA
* * *
9201852 GATAATATTCATCATCATAGTTTCATTCCAAC
64 GATAAGATTCACCATCGTAGTTTCATTCCAAC
* * * *
9201884 CCACTGCAACTTCAGGGGTATAGGATTTGTAACTTC-ATCTTGTTCCACTGCAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGGTATAGGATTTATAGCTTCAATCTTGTTCCACTACAACTTCAGAGAGA
* *
9201948 TAAGAGTCACCATCGTAGTTGCATTCCAAC
66 TAAGATTCACCATCGTAGTTTCATTCCAAC
* * * * * *
9201978 CCACTGAAATTTCAAGGGTATAGGATTTATAGCTTCAAT-TT-TCTCCACCATAACTTTAGAGAG
1 CCACTGCAACTTCAGGGGTATAGGATTTATAGCTTCAATCTTGT-TCCACTACAACTTCAGAGAG
* * * * * *
9202041 ATAAGATTTACTATGGTAGATTCAATGCAAC
65 ATAAGATTCACCATCGTAGTTTCATTCCAAC
* * * * *
9202072 CCACTGCAATTTCAGGGGTATAGGATTTGTAGCTTCAATC-TGCTCTACTGCAACTTCA-AGGAG
1 CCACTGCAACTTCAGGGGTATAGGATTTATAGCTTCAATCTTGTTCCACTACAACTTCAGA-GAG
9202135 ATAA
65 ATAA
9202139 AATTTGCTAT
Statistics
Matches: 207, Mismatches: 41, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
93 5 0.02
94 200 0.97
95 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (95 bp):
CCACTGCAACTTCAGGGGTATAGGATTTATAGCTTCAATCTTGTTCCACTACAACTTCAGAGAGA
TAAGATTCACCATCGTAGTTTCATTCCAAC
Found at i:9202149 original size:94 final size:94
Alignment explanation
Indices: 9201873--9202192 Score: 310
Period size: 94 Copynumber: 3.4 Consensus size: 94
9201863 TCATCATAGT
* * * *
9201873 TTCATTCCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAACTTC-ATCTTGTTCCACTGCAA
1 TTCAATCCAACCCACTGCAATTTCAGGGGTATAGGATTTGTAGCTTCAATC-TGCTCCACTGCAA
* * * * *
9201937 CTTCAGGGAGATAAGAGTCACCATCGTAG-
65 CTTCAAGGAGATAAGATTTACTATGGTAGA
* * * * * * ***
9201966 TTGCATTCCAACCCACTGAAATTTCAAGGGTATAGGATTTATAGCTTCAATTTTCTCCACCATAA
1 TT-CAATCCAACCCACTGCAATTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAA
*
9202031 CTT-TAGAGAGATAAGATTTACTATGGTAGA
65 CTTCAAG-GAGATAAGATTTACTATGGTAGA
* *
9202061 TTCAATGCAACCCACTGCAATTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCTACTGCAAC
1 TTCAATCCAACCCACTGCAATTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAAC
* *
9202126 TTCAAGGAGATAAAATTTGCTATGGT-GA
66 TTCAAGGAGATAAGATTTACTATGGTAGA
* * * *
9202154 CTTCAACCCAATCCACTGTAACTTT-A-GGGTATATGATTT
1 -TTCAATCCAACCCACTGCAA-TTTCAGGGGTATAGGATTT
9202193 ATGGTTTCAC
Statistics
Matches: 184, Mismatches: 36, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
93 17 0.09
94 158 0.86
95 9 0.05
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (94 bp):
TTCAATCCAACCCACTGCAATTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAAC
TTCAAGGAGATAAGATTTACTATGGTAGA
Found at i:9206954 original size:158 final size:156
Alignment explanation
Indices: 9206546--9206990 Score: 419
Period size: 158 Copynumber: 2.8 Consensus size: 156
9206536 TTTATTGAAA
* * * * *
9206546 TAAAAACTCTTACTTCGGCCCTTTCTTCATATTTTTTTCTCCGTATTTTATTACTTTAAAAAATA
1 TAAAAACTCTTACTTTGGCCCTTTATTCGTATTTTTTTCTCCGAATTTTATTATTTTAAAAAATA
*
9206611 TCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTG-AA-ATTTATTAATT
66 TCATAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATATTTATTAATT
* * *
9206674 TAGTGTGTTTTTTAAATTAATTTAGTG
131 TAGTCTGATTTTTAAATAAATTTAG-G
* * * *
9206701 TAAAAAAAAACCCTTA-TTCCT-GCCCTTTACTCGTATTATTTTC-CCGAATTTTATTACTTTCA
1 T----AAAAACTCTTACTT--TGGCCCTTTATTCGTATTTTTTTCTCCGAATTTTATTA-TTT-T
* * * * * * *
9206763 ATAAAAATAT-ATTATTTTCGT-ATTTTATTATTTTATATTGTTTCAGTACATTTTATTTGAAAT
58 A-AAAAATATCATAATTTT--TAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAAT
*
9206826 ATTTGTATTAA-TTATTTCTGAATTTTTAAA-AAATTTA-G
120 A-TT-TATTAATTTA-GTCTG-ATTTTTAAATAAATTTAGG
* * * * *
9206864 TAAAACACTCTTACTTTGGTCATTTGTTCGTATTTTTTTCTCTGCATTTTATTATTTTAAAAAAT
1 TAAAA-ACTCTTACTTTGGCCCTTTATTCGTATTTTTTTCTCCGAATTTTATTATTTTAAAAAAT
9206929 ATCATAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTG-AA-ATTTATTAA
65 ATCATAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATATTTATTAA
9206991 ATATACCATT
Statistics
Matches: 230, Mismatches: 37, Indels: 47
0.73 0.12 0.15
Matches are distributed among these distances:
154 6 0.03
155 3 0.01
156 1 0.00
157 3 0.01
158 54 0.23
159 43 0.19
160 33 0.14
161 53 0.23
162 3 0.01
163 3 0.01
164 5 0.02
165 15 0.07
166 8 0.03
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (156 bp):
TAAAAACTCTTACTTTGGCCCTTTATTCGTATTTTTTTCTCCGAATTTTATTATTTTAAAAAATA
TCATAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATATTTATTAATT
TAGTCTGATTTTTAAATAAATTTAGG
Found at i:9207334 original size:10 final size:10
Alignment explanation
Indices: 9207319--9207501 Score: 83
Period size: 10 Copynumber: 17.9 Consensus size: 10
9207309 AAATTACATT
9207319 TTTTTCTTTC
1 TTTTTCTTTC
*
9207329 TTTTTCCTTC
1 TTTTTCTTTC
* **
9207339 CTTCCCTATTC
1 TTTTTCT-TTC
*
9207350 TTCTTCTTTC
1 TTTTTCTTTC
9207360 TTTCATT-TTTC
1 TTT--TTCTTTC
*
9207371 TCTTATCCTTTC
1 T-TT-TTCTTTC
*
9207383 CTTTTCTTTCC
1 TTTTTCTTT-C
*
9207394 TTCTT-TTTC
1 TTTTTCTTTC
9207403 TTTTT-TTT-
1 TTTTTCTTTC
*
9207411 TTCTTCTTCTC
1 TTTTTCTT-TC
* *
9207422 CTTTCCTTT-
1 TTTTTCTTTC
* *
9207431 TCTTTCCTTC
1 TTTTTCTTTC
9207441 TTTTTCTTTC
1 TTTTTCTTTC
9207451 TTTTCTCTCCTTTC
1 -TTT-T-T-CTTTC
*
9207465 CTTTTCTTTC
1 TTTTTCTTTC
9207475 TTTTTCTTTC
1 TTTTTCTTTC
9207485 --TTTCTTTC
1 TTTTTCTTTC
*
9207493 TTCTTCTTT
1 TTTTTCTTT
9207502 TCCTCTCCTT
Statistics
Matches: 128, Mismatches: 29, Indels: 32
0.68 0.15 0.17
Matches are distributed among these distances:
8 12 0.09
9 15 0.12
10 55 0.43
11 28 0.22
12 10 0.08
13 3 0.02
14 5 0.04
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:9207424 original size:44 final size:44
Alignment explanation
Indices: 9207347--9207516 Score: 194
Period size: 44 Copynumber: 4.0 Consensus size: 44
9207337 TCCTTCCCTA
* *
9207347 TTCTTCTTCTTTCTTTCATTTTTC-TCTTATCCTTTCCTTTTCT
1 TTCTTCTTCTTTCTTTCTTTTTTCTTCTTCTCCTTTCCTTTTCT
*
9207390 TTCCTTCTT-TTTCTTTTTTTTTTCTTCTTCTCCTTTCCTTTTCT
1 TT-CTTCTTCTTTCTTTCTTTTTTCTTCTTCTCCTTTCCTTTTCT
*
9207434 TTC--CTTC-TT-TTTCTTTCTT-TTC-TCTCCTTTCCTTTTCT
1 TTCTTCTTCTTTCTTTCTTTTTTCTTCTTCTCCTTTCCTTTTCT
* * * * *
9207472 TTCTTTTTCTTTCTTTCTTTCTTCTTCTTTTCCTCTCCTTCTCT
1 TTCTTCTTCTTTCTTTCTTTTTTCTTCTTCTCCTTTCCTTTTCT
9207516 T
1 T
9207517 CTCCCCACCC
Statistics
Matches: 109, Mismatches: 9, Indels: 17
0.81 0.07 0.13
Matches are distributed among these distances:
38 19 0.17
39 3 0.03
40 11 0.10
41 7 0.06
42 10 0.09
43 19 0.17
44 40 0.37
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.69
Consensus pattern (44 bp):
TTCTTCTTCTTTCTTTCTTTTTTCTTCTTCTCCTTTCCTTTTCT
Found at i:9207442 original size:38 final size:39
Alignment explanation
Indices: 9207365--9207499 Score: 134
Period size: 38 Copynumber: 3.3 Consensus size: 39
9207355 CTTTCTTTCA
*
9207365 TTTTTC-TCTTATCCTTTCCTTTTCTTTCCTTCTTTTTCTTTTT
1 TTTTTCTTCTTCTCCTTTCCTTTTCTTT-C-TC---TTCTTTTT
9207408 TTTTTCTTCTTCTCCTTTCCTTTTCTTTC-CTTCTTTTT
1 TTTTTCTTCTTCTCCTTTCCTTTTCTTTCTCTTCTTTTT
*
9207446 CTTTCTT-TTC-TCTCCTTTCCTTTTCTTTCTTTTTCTTTCTT
1 -TTT-TTCTTCTTCTCCTTTCCTTTTCTTTC-TCTTCTTT-TT
*
9207487 TCTTTCTTCTTCT
1 TTTTTCTTCTTCT
9207500 TTTCCTCTCC
Statistics
Matches: 81, Mismatches: 3, Indels: 18
0.79 0.03 0.18
Matches are distributed among these distances:
38 27 0.33
39 8 0.10
40 13 0.16
41 6 0.07
43 7 0.09
44 20 0.25
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (39 bp):
TTTTTCTTCTTCTCCTTTCCTTTTCTTTCTCTTCTTTTT
Found at i:9207480 original size:34 final size:35
Alignment explanation
Indices: 9207388--9207487 Score: 118
Period size: 34 Copynumber: 2.8 Consensus size: 35
9207378 CTTTCCTTTT
9207388 CTTTCCTTCTT-TTTCTTTTT-TTT-TTCTTCTTCTC
1 CTTTCCTT-TTCTTTCTTTTTCTTTCTT-TTCTTCTC
9207422 CTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTTC-TCTC
1 CTTTCCTTTTC--T--TTCTTTTTCTTTCTTTTCTTCTC
9207460 CTTTCCTTTTCTTTCTTTTTCTTTCTTT
1 CTTTCCTTTTCTTTCTTTTTCTTTCTTT
9207488 CTTTCTTCTT
Statistics
Matches: 59, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
33 2 0.03
34 24 0.41
36 2 0.03
38 23 0.39
39 6 0.10
40 2 0.03
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (35 bp):
CTTTCCTTTTCTTTCTTTTTCTTTCTTTTCTTCTC
Found at i:9207499 original size:24 final size:23
Alignment explanation
Indices: 9207384--9207513 Score: 115
Period size: 24 Copynumber: 5.6 Consensus size: 23
9207374 TATCCTTTCC
9207384 TTTTCTTTCCTTCTTTTTCTT-T
1 TTTTCTTTCCTTCTTTTTCTTCT
* * *
9207406 TTTT-TTT-CTTCTTCTCCTTTCC
1 TTTTCTTTCCTTCTTTTTC-TTCT
9207428 TTTTCTTTCCTTCTTTTTCTT-T
1 TTTTCTTTCCTTCTTTTTCTTCT
* *
9207450 CTTTTCTCTCCTTTCCTTTTCTTTCT
1 -TTTTCTTTCC-TTCTTTTTC-TTCT
*
9207476 TTTTCTTTCTTTCTTTCTTCTTCT
1 TTTTCTTTCCTTCTTT-TTCTTCT
* *
9207500 TTTCCTCTCCTTCT
1 TTTTCTTTCCTTCT
9207514 CTTCTCCCCA
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
20 8 0.09
21 5 0.06
22 8 0.09
23 14 0.16
24 36 0.42
25 13 0.15
26 1 0.01
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTCTTTCCTTCTTTTTCTTCT
Found at i:9207588 original size:27 final size:27
Alignment explanation
Indices: 9207558--9207625 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
9207548 ATATAGGCAA
9207558 TGCCGCCTATGGGAGGGGAACCA-TCGG
1 TGCCGCCTATGGGAGGGGAA-CATTCGG
* * *
9207585 TGCCGCTTATGGGAGGGGCACATTTGG
1 TGCCGCCTATGGGAGGGGAACATTCGG
9207612 TGCCGCCTATGGGA
1 TGCCGCCTATGGGA
9207626 TACCCTCCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.21
Consensus pattern (27 bp):
TGCCGCCTATGGGAGGGGAACATTCGG
Found at i:9209120 original size:12 final size:12
Alignment explanation
Indices: 9209083--9209120 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
9209073 GCTACATTTC
9209083 TTATTATTTCTT
1 TTATTATTTCTT
*
9209095 TTAGTAGTTT-TT
1 TTATTA-TTTCTT
9209107 TTATTATTTCTT
1 TTATTATTTCTT
9209119 TT
1 TT
9209121 TTTTAAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 3 0.14
12 16 0.73
13 3 0.14
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (12 bp):
TTATTATTTCTT
Found at i:9215558 original size:124 final size:125
Alignment explanation
Indices: 9215419--9215666 Score: 480
Period size: 124 Copynumber: 2.0 Consensus size: 125
9215409 CAAAAATATT
9215419 TATGAGCCAACAATTCTCAAAGATTGTATCGTACCTCCACACTCAGAACTCTATCAACACTCGCT
1 TATGAGCCAACAATTCTCAAAGATTGTATCGTACCTCCACACTCAGAACTCTATCAACACTCGCT
9215484 ACACTCTTACTTCACCAATTAGAAACCTATTTAACATATATATTTAAAGAAAAAAAAAAG
66 ACACTCTTACTTCACCAATTAGAAACCTATTTAACATATATATTTAAAGAAAAAAAAAAG
*
9215544 TATGAGCCAA-AATTCTCAAAGTTTGTATCGTACCTCCACACTCAGAACTCTATCAACACTCGCT
1 TATGAGCCAACAATTCTCAAAGATTGTATCGTACCTCCACACTCAGAACTCTATCAACACTCGCT
9215608 ACACTCTTACTTCACCAATTAGAAACCTATTTAACATATATATTTAAAGAAAAAAAAAA
66 ACACTCTTACTTCACCAATTAGAAACCTATTTAACATATATATTTAAAGAAAAAAAAAA
9215667 AAAGGTTGCA
Statistics
Matches: 122, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
124 112 0.92
125 10 0.08
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.28
Consensus pattern (125 bp):
TATGAGCCAACAATTCTCAAAGATTGTATCGTACCTCCACACTCAGAACTCTATCAACACTCGCT
ACACTCTTACTTCACCAATTAGAAACCTATTTAACATATATATTTAAAGAAAAAAAAAAG
Found at i:9218641 original size:32 final size:30
Alignment explanation
Indices: 9218606--9218664 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
9218596 AACAAGAGAG
* *
9218606 AGAGAGAGAGATCCTTTGCTCTATGTGAGT
1 AGAGAGAGAGATCCTCTGCCCTATGTGAGT
9218636 AGAGAGAGAGATCCTCTGCCCTATGTGAG
1 AGAGAGAGAGATCCTCTGCCCTATGTGAG
9218665 CCCCAGACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (30 bp):
AGAGAGAGAGATCCTCTGCCCTATGTGAGT
Found at i:9235968 original size:23 final size:22
Alignment explanation
Indices: 9235921--9235964 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
9235911 CTGTAAACTC
*
9235921 TTTTTCTTAATTTAGTATTTAA
1 TTTTTCTTAATTTAGCATTTAA
* *
9235943 TTTTTTTTAATTTGGCATTTAA
1 TTTTTCTTAATTTAGCATTTAA
9235965 ATTTGTCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.64
Consensus pattern (22 bp):
TTTTTCTTAATTTAGCATTTAA
Found at i:9240008 original size:23 final size:23
Alignment explanation
Indices: 9239981--9240026 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9239971 ACATCTTAAA
9239981 AATATTTTTATTTTTTTTAGCTT
1 AATATTTTTATTTTTTTTAGCTT
9240004 AATATTTTTATTTTTTTTAGCTT
1 AATATTTTTATTTTTTTTAGCTT
9240027 TCCCTCCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (23 bp):
AATATTTTTATTTTTTTTAGCTT
Found at i:9244685 original size:24 final size:24
Alignment explanation
Indices: 9244648--9244693 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
9244638 GCAATTCATT
9244648 TCGATGGTGTTATTTTAGAAACAA
1 TCGATGGTGTTATTTTAGAAACAA
*
9244672 TCGATGGT-TGTATTTTTGAAAC
1 TCGATGGTGT-TATTTTAGAAAC
9244694 TCATTAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (24 bp):
TCGATGGTGTTATTTTAGAAACAA
Found at i:9247348 original size:12 final size:12
Alignment explanation
Indices: 9247315--9247348 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9247305 CTTTATAATT
* *
9247315 TATATATATACA
1 TATATACATGCA
9247327 TATATACATGCA
1 TATATACATGCA
9247339 TATATACATG
1 TATATACATG
9247349 TTTTTATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (12 bp):
TATATACATGCA
Found at i:9247426 original size:23 final size:24
Alignment explanation
Indices: 9247400--9247445 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
9247390 ATATATCTAC
* *
9247400 ATATATATCTTCCT-TTTTTATAA
1 ATATATATATACCTATTTTTATAA
9247423 ATATATATATACCTATTTTTATA
1 ATATATATATACCTATTTTTATA
9247446 TTTTTCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATATATACCTATTTTTATAA
Found at i:9247488 original size:13 final size:13
Alignment explanation
Indices: 9247470--9247494 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9247460 AAATGTACCA
9247470 TTTTTATATATAT
1 TTTTTATATATAT
9247483 TTTTTATATATA
1 TTTTTATATATA
9247495 CATACATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTATATATAT
Found at i:9251723 original size:23 final size:24
Alignment explanation
Indices: 9251678--9251723 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
9251668 AGATTCATTC
* *
9251678 AAAAAAATCAATCAAAGTCAAAAT
1 AAAAAAATCAATAAAAATCAAAAT
*
9251702 AAAAAAAT-AATAAAAATGAAAA
1 AAAAAAATCAATAAAAATCAAAA
9251724 AAGAGAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.15
Consensus pattern (24 bp):
AAAAAAATCAATAAAAATCAAAAT
Found at i:9252323 original size:15 final size:15
Alignment explanation
Indices: 9252303--9252334 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
9252293 TCAAGGTCGG
9252303 ATGTACCAGAAACAA
1 ATGTACCAGAAACAA
9252318 ATGTACCAGAAACAA
1 ATGTACCAGAAACAA
9252333 AT
1 AT
9252335 AAATAGGGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.19, G:0.12, T:0.16
Consensus pattern (15 bp):
ATGTACCAGAAACAA
Found at i:9252598 original size:6 final size:6
Alignment explanation
Indices: 9252589--9252630 Score: 66
Period size: 6 Copynumber: 6.7 Consensus size: 6
9252579 AAAAAAATAA
9252589 AAAATG AAAATG AAAATG AAAATG AAAAATG AAAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAA
9252631 AGTAAAAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 22 0.63
7 13 0.37
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:9252604 original size:13 final size:13
Alignment explanation
Indices: 9252582--9252631 Score: 75
Period size: 12 Copynumber: 3.8 Consensus size: 13
9252572 TGAGTCAAAA
*
9252582 AAAATAAAAAATG
1 AAAATGAAAAATG
9252595 AAAATG-AAAATG
1 AAAATGAAAAATG
9252607 AAAATGAAAAATG
1 AAAATGAAAAATG
9252620 AAAAATGAAAAA
1 -AAAATGAAAAA
9252632 GTAAAAGTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 12 0.35
13 11 0.32
14 11 0.32
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:9252637 original size:13 final size:13
Alignment explanation
Indices: 9252582--9252637 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
9252572 TGAGTCAAAA
*
9252582 AAAAT-AAAAAAT
1 AAAATGAAAAAGT
*
9252594 GAAAATGAAAATG-
1 -AAAATGAAAAAGT
*
9252607 AAAATGAAAAATGA
1 AAAATGAAAAA-GT
9252621 AAAATGAAAAAGT
1 AAAATGAAAAAGT
9252634 AAAA
1 AAAA
9252638 GTGGAGAGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
12 10 0.28
13 11 0.31
14 15 0.42
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.14
Consensus pattern (13 bp):
AAAATGAAAAAGT
Found at i:9253946 original size:44 final size:44
Alignment explanation
Indices: 9253899--9255609 Score: 1135
Period size: 44 Copynumber: 39.6 Consensus size: 44
9253889 TATCAAGTCC
* ** *
9253899 TATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * **
9253943 TATCTCCCTAAGTAGTAGTGGAGCAGGTCAAAGATGGTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * * * * *
9253987 TATCTCCCTAAGCAGTAGTGGAACAGATCGAGGACGGCAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * * * ** *** *
9254031 TATCTTCCTAAGCAGTAGTGAATCAGATTTAAGCCACCAG-TCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * ** *
9254074 TATCTCCCTAAGCAGTAGGGGAGCAAGTCGAAGATGGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * * ** *
9254118 TATCTCCCTAAGCAGTAGTAGAGTAGGTCAAAGATGGTAGATAT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * *
9254162 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGC-GAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAG-ATCT
* * * * ** * ***
9254206 TATCTTCCTAAGCAGTAGTGAAGTAGATTTAGGCCACCAG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
** *
9254249 TATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGA-TGCCAGATCT
* * * *
9254293 TATCTACCTAAGCAGTAGTGGAGCAGATCG--CAT-CAAG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* ** *
9254333 TATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-GAAGATGCCAGATCT
* * * *
9254376 TAACTCCCTGAGCAGTAGTGGAGTAGGTCGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGA-TGCCAGATCT
* * * *
9254420 TATCTCCCTAAGCAGTAGTGGAGCAGATTG--CAT-CAAG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* ** *
9254460 TATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-GAAGATGCCAGATCT
* * * * * *
9254503 TATCTCCCTGAGCAGCAGTAGG-GTAGGTTGAATATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGT-GGAGCAGGTCGAAGA-TGCCAGATCT
* * * *
9254547 TATTTCCCTAAGCAGTAGTGGAGCAGATCG--CAT-CAAG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* ** * *
9254587 TATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGA-AACAAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-GAAGATGCCAGATCT
* * * * * * ***
9254630 TATCTCCCTGAGCAGCAGTAGAGTAGGTTGAATATTATAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * *
9254674 TATCTCCCTAAGCAGTAGTGGAGCAGATCG--CAT-CAAG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* ** *
9254714 TATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-GAAGATGCCAGATCT
* * * * ** * ***
9254757 TATCTCCCTGAGCAGCAGTAGAGTAGGTTTAATATTATAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * *
9254801 TATCTCCCTAAGCAGTAGTGGAGCAGATCG--CAT-CAAG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * * ** *
9254841 TATCTCCCTAAGCAATAGTGGAGCAGATAGAAGAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * *
9254884 TATCTCCCTAAGCAGCAGTGGAGCAGGTCAAAGATGACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * * *
9254928 TATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACGGC-GAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAG-ATCT
* * * * * ** *** *
9254972 TATCTTCCTAAGCAATAGTGAATCAGATTTAAGCCACCAG-TCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * ** *
9255015 TATCTCCTTAAGCAGTAGTGGAGCA-GACAGAAGAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-GAAGATGCCAGATCT
* ** *
9255058 TATCTCCCTAAGCAGTAGTAGAGCAGGTCGAAGATGGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
*
9255102 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-AACGATGACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAA-GATGCCAGATCT
* ** * *
9255146 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGAC-GAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAG-ATCT
* * * * ** ** *
9255190 TATCTTCCTAAGCAATAGTGAAGCAGATTTAA-ACCACCAG-TCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGA-TGCCAGATCT
* ** *
9255233 TATCTCCTTAAGCAGTAGTGGAGCAGGTTAAAGATGACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * * * *
9255277 TATCTCCCAAAGTAGTAGTGGAGCAGATCGAAGACGAC-GAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAG-ATCT
* * * ** ** *
9255321 TATCTTCCTAAGCAGTAGTGAAGCAGATTTAA-ACCACCAG-TCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGA-TGCCAGATCT
* * ** *
9255364 TATCTCCCTAAGCAGTAGTGGAGAAGGTCGAATATGGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * *
9255408 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGACAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
** *
9255452 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* * *
9255496 TATCTCCCTAAGTAGTAGTGGAGCAGGTCAAAGATGACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
* *
9255540 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA--CAACGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCA-G-ATCT
* *
9255584 TATCTTCCTAAGCAGTAGTGAAGCAG
1 TATCTCCCTAAGCAGTAGTGGAGCAG
9255610 ATTTAAGCCA
Statistics
Matches: 1303, Mismatches: 299, Indels: 130
0.75 0.17 0.08
Matches are distributed among these distances:
39 3 0.00
40 145 0.11
41 13 0.01
42 14 0.01
43 345 0.26
44 777 0.60
45 6 0.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (44 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGCCAGATCT
Found at i:9254174 original size:131 final size:130
Alignment explanation
Indices: 9253940--9255638 Score: 1211
Period size: 127 Copynumber: 13.1 Consensus size: 130
9253930 AGATGGTAGA
* * *** *
9253940 TCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCA-GTCGAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* * * * ** * * * * * *
9254005 TGGAACAGATCGAGGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAATCAGATTTAAGCCACCA
65 TGGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACAA
9254070 G
130 G
* ***
9254071 TCCTATCTCCCTAAGCAGTAGGGGAGCAAGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGC-AGTCGAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* * * * ** **
9254136 TAGAGTAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG
65 TGGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCAC-
9254201 AA-
128 AAG
* * * * ** * ** *
9254203 TCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAGGCCACCAG-TCTTATCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAG-TCGAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* * *
9254267 TGGAGCAGGTTAAAGATTGTAGATCTTATCTACCTAAGCAGTAGTGGAGCAGA--T-CG-CATCA
65 TGGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA-CA
9254328 AG
129 AG
* * * * *
9254330 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACCA-ATCCTAACTCCCTGAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGTC-GAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* *
9254394 TGGAGTAGGTCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TT--G-CATCA
65 TGGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA-CA
9254455 AG
129 AG
* * * * *
9254457 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACCA-ATCCTATCTCCCTGAGCAGCAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGTC-GAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* ** * * *
9254521 TAGG-GTAGGTTGAATATTGTAGATCTTATTTCCCTAAGCAGTAGTGGAGCAGA--T-CG-CATC
65 T-GGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA-C
9254581 AAG
128 AAG
* * * * * *
9254584 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGA-AACAAATCCTATCTCCCTGAGCAGCAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGTC-GAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* * ** * * *
9254648 TAGAGTAGGTTGAATATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA--T-CG-CATCA
65 TGGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA-CA
9254709 AG
129 AG
* * * * *
9254711 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACCA-ATCCTATCTCCCTGAGCAGCAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGTC-GAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* * ** * * *
9254775 TAGAGTAGGTTTAATATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA--T-CG-CATCA
65 TGGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA-CA
9254836 AG
129 AG
* * * * *
9254838 TCTTATCTCCCTAAGCAATAGTGGAGCAGATAGAAGAAACCA-ATCCTATCTCCCTAAGCAGCAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAG-TCGAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* * ** **
9254902 TGGAGCAGGTCAAAGA-TGACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACGGC
65 TGGAGCAGGTCAAAGATTG-TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCAC
9254966 GAA-
128 -AAG
* * * * * ** ** *
9254969 TCTTATCTTCCTAAGCAATAGTGAATCAGATTTAAGCCACCAG-TCCTATCTCCTTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAG-TCGAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* **** * * * ** *****
9255033 TGGAGCA-GACAGAAGAAACCA-ATCCTATCTCCCTAAGCAGTAGTAGAGCAGGTCGAAGATGGT
65 TGGAGCAGGTCA-AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACA
9255096 AG
129 AG
*
9255098 ATCCTATCTCCCTAAGCAGTAGTGGAGCAGGTC-AACGATGA-CAGATCTTATCTCCCTAAGCAG
1 -TCCTATCTCCCTAAGCAGTAGTGGAGCA-GTCGAA-GAT-ACCAGATCCTATCTCCCTAAGCAG
* * * * * * *
9255161 TAGTGGAGCAGATTAAAGA-CG-ACGAATCTTATCTTCCTAAGCAATAGTGAAGCAGATTTAAAC
62 TAGTGGAGCAGGTCAAAGATTGTA-G-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGC
*
9255224 CACCAG
125 CACAAG
* ** * * *
9255230 TCCTATCTCCTTAAGCAGTAGTGGAGCAGGTTAAAGATGA-CAGATCTTATCTCCCAAAGTAGTA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCA-GTCGAAGAT-ACCAGATCCTATCTCCCTAAGCAGTA
* * * * * *
9255294 GTGGAGCAGATCGAAGA-CG-ACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAACCA
64 GTGGAGCAGGTCAAAGATTGTA-G-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA
*
9255357 CCAG
127 CAAG
* * ***
9255361 TCCTATCTCCCTAAGCAGTAGTGGAGAAGGTCGAATATGGTAGATCCTATCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCA-GTCGAAGATACCAGATCCTATCTCCCTAAGCAGTAG
* * * ** *****
9255426 TGGAGCAGGTCAAAGA-TGACAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
65 TGGAGCAGGTCAAAGATTG-TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACA
9255490 AG
129 AG
* * *
9255492 ATCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCAAAGATGA-CAGATCTTATCTCCCTAAGCAGT
1 -TCCTATCTCCCTAAGCAGTAGTGGAGCA-GTCGAAGAT-ACCAGATCCTATCTCCCTAAGCAGT
* * ** * *
9255556 AGTGGAGCAGATCGAAGA--CAACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCC
63 AGTGGAGCAGGTCAAAGATTGTA-G-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCC
*
9255619 AC-CG
126 ACAAG
9255623 ATCCTATCTCCCTAAG
1 -TCCTATCTCCCTAAG
9255639 TTTAGTAGAG
Statistics
Matches: 1333, Mismatches: 192, Indels: 86
0.83 0.12 0.05
Matches are distributed among these distances:
126 8 0.01
127 565 0.42
128 8 0.01
129 4 0.00
130 66 0.05
131 512 0.38
132 168 0.13
133 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (130 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGCAGTCGAAGATACCAGATCCTATCTCCCTAAGCAGTAGT
GGAGCAGGTCAAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACAAG
Found at i:9254191 original size:175 final size:175
Alignment explanation
Indices: 9253894--9255638 Score: 729
Period size: 175 Copynumber: 10.1 Consensus size: 175
9253884 CATCATATCA
*
9253894 AGTCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGTAGT
1 AGTCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
* * *
9253959 AGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAGGACGG
66 AGTAGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGG
9254024 CAAATCTTATCTTCCTAAGCAGTAGTGAA-TCAGATTTAAGCCACC
131 CAAATCTTATCTTCCTAAGCAGTAGTGAAGT-AGATTTAAGCCACC
* *
9254069 AGTCCTATCTCCCTAAGCAGTAGGGGAGCAAGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
* *
9254134 AGTAGAGTAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGG
66 AGTAGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGG
* *
9254199 CGAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAGGCCACC
131 CAAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACC
* * ** * * *
9254244 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTGTAGATCTTATCTACCTAAGCAGT
1 AGTCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
* * ** * *
9254309 AGTGGAGCAGATC---GCAT-CAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGA-
66 AGTAGAGCAGGTCAAAG-ATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATC-GAAGAC
** * * * * * * * ** *****
9254367 AACCAATCCTAACTCCCTGAGCAGTAGTGGAGTAGGTCGAAGATTGT
129 GGCAAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACC
* * * * * ** *
9254414 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTG--CAT-CAAG-TCTTATCTCCCTAAGCAG
1 AG-TCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAG
* * **** ** * * ** * * *
9254475 TAGTGGAGCA-GACAGAAGAAACCA-ATCCTATCTCCCTGAGCAGCAGTAGG-GTAGGTTGAATA
65 TAGTAGAGCAGGTCA-AAGATGGTAGATATTATCTCCCTAAGCAGTAGT-GGAACAGATCGAAGA
** * * * * * *
9254537 TTGTAGATCTTAT-TTCCCTAAGCAGTAGTGGAGCAGA--T-CG-CATCA
128 CGGCAAATCTTATCTT-CCTAAGCAGTAGTGAAGTAGATTTAAGCCA-CC
* * * *** * *
9254582 AGTCTTATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGA-AACAAATCCTATCTCCCTGAGCAG
1 AGTCCTATCTCCCTAAGCAGTAGCGGAGCAGGTC-GAAGATGGTAGATCCTATCTCCCTAAGCAG
* * ** * ** * * *
9254645 CAGTAGAGTAGGTTGAATATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---G-CA
65 TAGTAGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACG
* * * * * *** **
9254706 TCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACC
130 GCAAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACC
* * * ** * ** * ** *
9254752 AATCCTATCTCCCTGAGCAGCAGTAGAGTAGGTTTAATATTATAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
* * ** * * * * *
9254817 AGTGGAGCAGATC---GCAT-CAAG-TCTTATCTCCCTAAGCAATAGTGGAGCAGATAGAAGA-A
66 AGTAGAGCAGGTCAAAG-ATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACG
* * * * * * * * ** **
9254876 ACCAATCCTATCTCCCTAAGCAGCAGTGGAGCAGGTCAAAGATGA-C
130 GCAAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAG-CCACC
* * * * * * * *
9254922 AGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACGG-CGAATCTTATCTTCCTAAGCA
1 AG-TCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAG-ATCCTATCTCCCTAAGCA
* * * ** ***** ** * *
9254986 ATAGT-GAATCAGATTTAAGCCACCAG-TCCTATCTCCTTAAGCAGTAGTGGAGCAGA-CAGAAG
64 GTAGTAG-AGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATC-GAAG
** * * * * * ** *****
9255048 A-AACCAATCCTATCTCCCTAAGCAGTAGT-AGAGCAGGTCGAAGATGGT
127 ACGGCAAATCTTATCTTCCTAAGCAGTAGTGA-AGTAGATTTAAGCCACC
* ** *
9255096 AGATCCTATCTCCCTAAGCAGTAGTGGAGCAGGTC-AACGATGACAGATCTTATCTCCCTAAGCA
1 AG-TCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAA-GATGGTAGATCCTATCTCCCTAAGCA
* * * * * * * **
9255160 GTAGTGGAGCAGATTAAAGA-CG-ACGAATCTTATCTTCCTAAGCAATAGT-GAAGCAGATTTAA
64 GTAGTAGAGCAGGTCAAAGATGGTA-G-ATATTATCTCCCTAAGCAGTAGTGGAA-CAGATCGAA
** * * * * * * * **
9255222 -ACCACCAGTCCTATC-TCCTTAAGCAGTAGTGGAGCAGGTTAAAGATGA-C
126 GACGGCAAATCTTATCTTCC-TAAGCAGTAGTGAAGTAGATTTAAG-CCACC
* * * * * * * *
9255271 AGATCTTATCTCCCAAAGTAGTAGTGGAGCAGATCGAAGA-CG-ACGAATCTTATCTTCCTAAGC
1 AG-TCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTA-G-ATCCTATCTCCCTAAGC
* * * ** ** *
9255334 AGTAGT-GAAGCAGATTTAAACCA--CCAG-TCCTATCTCCCTAAGCAGTAGTGGAGA-AGGTCG
63 AGTAGTAG-AGCAG-GTCAAA-GATGGTAGATATTATCTCCCTAAGCAGTAGTGGA-ACAGATCG
* * * * * * * * * ** **
9255394 AATATGGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGA-C
124 AAGACGGCAAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAG-CCACC
* *
9255446 AGATCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGTAG
1 AG-TCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAG
* ** * * *
9255511 TAGTGGAGCAGGTCAAAGATGACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACA
65 TAGTAGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACG
* * *
9255576 ACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACC
130 GCAAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACC
9255622 -GATCCTATCTCCCTAAG
1 AG-TCCTATCTCCCTAAG
9255639 TTTAGTAGAG
Statistics
Matches: 1226, Mismatches: 267, Indels: 154
0.74 0.16 0.09
Matches are distributed among these distances:
166 1 0.00
167 114 0.09
168 8 0.01
169 7 0.01
170 159 0.13
171 200 0.16
172 4 0.00
173 7 0.01
174 175 0.14
175 469 0.38
176 79 0.06
177 3 0.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (175 bp):
AGTCCTATCTCCCTAAGCAGTAGCGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
AGTAGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGG
CAAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACC
Found at i:9256376 original size:20 final size:20
Alignment explanation
Indices: 9256340--9256377 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9256330 CAGCAAGGAC
9256340 AAACAGAACAAAAAAACAAA
1 AAACAGAACAAAAAAACAAA
*
9256360 AAACAAGAA-AAAGAAACA
1 AAAC-AGAACAAAAAAACA
9256378 GATAGGACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.79, C:0.13, G:0.08, T:0.00
Consensus pattern (20 bp):
AAACAGAACAAAAAAACAAA
Found at i:9259749 original size:23 final size:24
Alignment explanation
Indices: 9259696--9259749 Score: 56
Period size: 27 Copynumber: 2.2 Consensus size: 24
9259686 AATTATTTAC
* *
9259696 ATATATTTGCATGAACTTGATTGTCAC
1 ATATATTTGCATGAAC-T--TTGTAAA
9259723 ATATATTTGCATGAAC-TTGTAAA
1 ATATATTTGCATGAACTTTGTAAA
9259746 ATAT
1 ATAT
9259750 CTAAATGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 9 0.36
27 16 0.64
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (24 bp):
ATATATTTGCATGAACTTTGTAAA
Found at i:9264715 original size:3 final size:3
Alignment explanation
Indices: 9264707--9264732 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9264697 ATGTTATTAA
9264707 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
9264733 ATTGTGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:9265215 original size:3 final size:3
Alignment explanation
Indices: 9265207--9265546 Score: 680
Period size: 3 Copynumber: 113.3 Consensus size: 3
9265197 TGAATTAGGG
9265207 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9265255 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9265303 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9265351 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9265399 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9265447 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9265495 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9265543 ATT A
1 ATT A
9265547 AGATGAGTGG
Statistics
Matches: 337, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 337 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:9268789 original size:35 final size:35
Alignment explanation
Indices: 9268723--9268818 Score: 90
Period size: 35 Copynumber: 2.7 Consensus size: 35
9268713 TCATGGTGTC
9268723 GCTCCGTAGAGCCAATAGATCATTTCTATAATACT
1 GCTCCGTAGAGCCAATAGATCATTTCTATAATACT
* * *
9268758 GCTCTGTAGAGCCAGTA-AGTCATTT-TCATAAT-GT
1 GCTCCGTAGAGCCAATAGA-TCATTTCT-ATAATACT
* * *
9268792 CGCTCCATAGAACCAGTAGATCATTTC
1 -GCTCCGTAGAGCCAATAGATCATTTC
9268819 CAATCAAACC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
34 3 0.06
35 46 0.92
36 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (35 bp):
GCTCCGTAGAGCCAATAGATCATTTCTATAATACT
Found at i:9269826 original size:42 final size:42
Alignment explanation
Indices: 9269737--9269915 Score: 162
Period size: 42 Copynumber: 4.3 Consensus size: 42
9269727 ATGTTGACAC
* * *
9269737 GTGCATCATCAAATGAACCAAAGCAAATACACTAGCACGTAA
1 GTGCATCATCAAATGAACCAAAGTAAATATACTAGCATGTAA
* * * *
9269779 ATGCATCATCAAATTAACC-AAGATAAATATACTGGCATGTAT
1 GTGCATCATCAAATGAACCAAAG-TAAATATACTAGCATGTAA
*** *
9269821 GTGCATCATTGGATGAACCAAAGTAATTATACTAGCATGTAA
1 GTGCATCATCAAATGAACCAAAGTAAATATACTAGCATGTAA
* ** ** * * * *
9269863 GTGCATCGTCGGATGAACTGAAGTAATTATACTGGCACGCAA
1 GTGCATCATCAAATGAACCAAAGTAAATATACTAGCATGTAA
9269905 GTGCATCATCA
1 GTGCATCATCA
9269916 GATAAATTGA
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 3 0.03
42 105 0.95
43 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.25
Consensus pattern (42 bp):
GTGCATCATCAAATGAACCAAAGTAAATATACTAGCATGTAA
Found at i:9269894 original size:84 final size:84
Alignment explanation
Indices: 9269737--9269969 Score: 216
Period size: 84 Copynumber: 2.8 Consensus size: 84
9269727 ATGTTGACAC
* * * * * * ** * *
9269737 GTGCATCATCAAATGAACCAAAGCAAATACACTAGCACGTAAATGCATCATCAAATTAAC-CAAG
1 GTGCATCATCAGATAAACCAAAGCAATTATACTAGCATGTAAGTGCATCATCGGATGAACTGAAG
* * * *
9269801 ATAAATATACTGGCATGTAT
66 -TAATTATACTGGCACGCAA
** * * *
9269821 GTGCATCATTGGATGAACCAAAGTAATTATACTAGCATGTAAGTGCATCGTCGGATGAACTGAAG
1 GTGCATCATCAGATAAACCAAAGCAATTATACTAGCATGTAAGTGCATCATCGGATGAACTGAAG
9269886 TAATTATACTGGCACGCAA
66 TAATTATACTGGCACGCAA
*** * * * *
9269905 GTGCATCATCAGATAAATTGAAGCAATTGTATTGGCATGTAAGTTCATCATCGGATGAACTGAAG
1 GTGCATCATCAGATAAACCAAAGCAATTATACTAGCATGTAAGTGCATCATCGGATGAACTGAAG
9269970 CAAGTACATC
Statistics
Matches: 119, Mismatches: 29, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
84 116 0.97
85 3 0.03
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (84 bp):
GTGCATCATCAGATAAACCAAAGCAATTATACTAGCATGTAAGTGCATCATCGGATGAACTGAAG
TAATTATACTGGCACGCAA
Found at i:9269927 original size:42 final size:42
Alignment explanation
Indices: 9269775--9269969 Score: 158
Period size: 42 Copynumber: 4.6 Consensus size: 42
9269765 ACACTAGCAC
* * * * *
9269775 GTAAATGCATCATCAAATTAAC-CAAGATAAATATACTGGCAT
1 GTAAGTGCATCATCAGATAAACTGAAG-TAATTATACTGGCAT
* ** * ** *
9269817 GTATGTGCATCATTGGATGAACCAAAGTAATTATACTAGCAT
1 GTAAGTGCATCATCAGATAAACTGAAGTAATTATACTGGCAT
* * * *
9269859 GTAAGTGCATCGTCGGATGAACTGAAGTAATTATACTGGCAC
1 GTAAGTGCATCATCAGATAAACTGAAGTAATTATACTGGCAT
* * * * *
9269901 GCAAGTGCATCATCAGATAAATTGAAGCAATTGTATTGGCAT
1 GTAAGTGCATCATCAGATAAACTGAAGTAATTATACTGGCAT
* * *
9269943 GTAAGTTCATCATCGGATGAACTGAAG
1 GTAAGTGCATCATCAGATAAACTGAAG
9269970 CAAGTACATC
Statistics
Matches: 122, Mismatches: 30, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
42 119 0.98
43 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (42 bp):
GTAAGTGCATCATCAGATAAACTGAAGTAATTATACTGGCAT
Found at i:9269970 original size:42 final size:42
Alignment explanation
Indices: 9269806--9269972 Score: 190
Period size: 42 Copynumber: 4.0 Consensus size: 42
9269796 CCAAGATAAA
* * ** *
9269806 TATACTGGCATGTATGTGCATCATTGGATGAACCAAAGTAAT
1 TATACTGGCATGTAAGTGCATCATCGGATGAACTGAAGCAAT
* * *
9269848 TATACTAGCATGTAAGTGCATCGTCGGATGAACTGAAGTAAT
1 TATACTGGCATGTAAGTGCATCATCGGATGAACTGAAGCAAT
* * * * *
9269890 TATACTGGCACGCAAGTGCATCATCAGATAAATTGAAGCAAT
1 TATACTGGCATGTAAGTGCATCATCGGATGAACTGAAGCAAT
* * *
9269932 TGTATTGGCATGTAAGTTCATCATCGGATGAACTGAAGCAA
1 TATACTGGCATGTAAGTGCATCATCGGATGAACTGAAGCAA
9269973 GTACATCATC
Statistics
Matches: 103, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 103 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (42 bp):
TATACTGGCATGTAAGTGCATCATCGGATGAACTGAAGCAAT
Found at i:9269981 original size:26 final size:26
Alignment explanation
Indices: 9269945--9269995 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
9269935 ATTGGCATGT
* *
9269945 AAGTTCATCATCGGATGAACTGAAGC
1 AAGTACATCATCGGATGAACCGAAGC
9269971 AAGTACATCATCGGATGAACCGAAG
1 AAGTACATCATCGGATGAACCGAAG
9269996 TAATTATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
AAGTACATCATCGGATGAACCGAAGC
Found at i:9270009 original size:110 final size:110
Alignment explanation
Indices: 9269861--9270082 Score: 277
Period size: 110 Copynumber: 2.0 Consensus size: 110
9269851 ACTAGCATGT
* * * **
9269861 AAGTGCATCGTCGGATGAACTGAAGTAATTATACTGGCACGCAAGTGCATCATCAGATAAATTGA
1 AAGTACATCATCGGATGAACCGAAGTAATTATACTGGCACGCAAGTGCATCATCAGATAAACCGA
* * * * *
9269926 AGCAATTGTA-TTG-GCATGTAAGTTCATCATCGGATGAACTGAAGC
66 AGCAATTCTACTAGCACATCT-AGTGCATCATC-GATGAACTGAAGC
* * * * *
9269971 AAGTACATCATCGGATGAACCGAAGTAATTATATTGGCACGTAAGTGTATCATTAGATGAACCGA
1 AAGTACATCATCGGATGAACCGAAGTAATTATACTGGCACGCAAGTGCATCATCAGATAAACCGA
9270036 AGCAATTCTACTAGCACATCTAGTGCATCATCGATGAACTGAAGC
66 AGCAATTCTACTAGCACATCTAGTGCATCATCGATGAACTGAAGC
9270081 AA
1 AA
9270083 ATATATTGAA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
110 79 0.83
111 12 0.13
112 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (110 bp):
AAGTACATCATCGGATGAACCGAAGTAATTATACTGGCACGCAAGTGCATCATCAGATAAACCGA
AGCAATTCTACTAGCACATCTAGTGCATCATCGATGAACTGAAGC
Found at i:9270015 original size:68 final size:68
Alignment explanation
Indices: 9269901--9270040 Score: 165
Period size: 68 Copynumber: 2.1 Consensus size: 68
9269891 ATACTGGCAC
* ** * * *
9269901 GCAAGTGCATCATCAGATAAATTGAAGCAATTGTATTGGCATGTAAGT-TCATCATCGGATGAAC
1 GCAAGTACATCATCAGATAAACCGAAGCAATTATATTGGCACGTAAGTGT-ATCATCAGATGAAC
*
9269965 TGAA
65 CGAA
* * * *
9269969 GCAAGTACATCATCGGATGAACCGAAGTAATTATATTGGCACGTAAGTGTATCATTAGATGAACC
1 GCAAGTACATCATCAGATAAACCGAAGCAATTATATTGGCACGTAAGTGTATCATCAGATGAACC
9270034 GAA
66 GAA
9270037 GCAA
1 GCAA
9270041 TTCTACTAGC
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
68 59 0.98
69 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (68 bp):
GCAAGTACATCATCAGATAAACCGAAGCAATTATATTGGCACGTAAGTGTATCATCAGATGAACC
GAA
Found at i:9270036 original size:42 final size:41
Alignment explanation
Indices: 9269984--9270149 Score: 125
Period size: 42 Copynumber: 4.0 Consensus size: 41
9269974 TACATCATCG
* * *
9269984 GATGAACCGAAGTAATTATATTGGCACGTAAGTGTATCATTA
1 GATGAACCGAAGCAAATATATTGGCACGTAAGTGCATCA-TA
* * * * * * *
9270026 GATGAACCGAAGCAATTCTACTAGCACATCTAGTGCATCATC
1 GATGAACCGAAGCAAATATATTGGCACGT-AAGTGCATCATA
* ** * **
9270068 GATGAACTGAAGCAAATATATTGAAAAGTAAGTGCATCACCG
1 GATGAACCGAAGCAAATATATTGGCACGTAAGTGCATCA-TA
* * **
9270110 GATGAACTGAAGTAAATATATTGGCACGTACTTGCATCAT
1 GATGAACCGAAGCAAATATATTGGCACGTAAGTGCATCAT
9270150 CAGCTAAATT
Statistics
Matches: 95, Mismatches: 27, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
41 9 0.09
42 78 0.82
43 8 0.08
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (41 bp):
GATGAACCGAAGCAAATATATTGGCACGTAAGTGCATCATA
Found at i:9270100 original size:152 final size:152
Alignment explanation
Indices: 9269824--9270121 Score: 364
Period size: 152 Copynumber: 2.0 Consensus size: 152
9269814 CATGTATGTG
* * * * * *
9269824 CATCATTGGATGAACCAAAGTAATTATACTAGCATGTAAGTGCATCGTCGGATGAACTGAAGTAA
1 CATCATCGGATGAACCAAAGTAATTATACTAGCACGTAAGTGCATCATCAGATGAACCGAAGCAA
* * * * ** * *
9269889 TTATACTGGCACGCAAGTGCATCATCAGATAAATTGAAGCAATTGTATTGGCATGTAAGTTCATC
66 TTATACTAGCACGCAAGTGCATCATCAGATAAACTGAAGCAAATATATTGAAAAGTAAGTGCATC
*
9269954 ATCGGATGAACTGAAGCAAGTA
131 ACCGGATGAACTGAAGCAAGTA
* * * * *
9269976 CATCATCGGATGAACCGAAGTAATTATATTGGCACGTAAGTGTATCATTAGATGAACCGAAGCAA
1 CATCATCGGATGAACCAAAGTAATTATACTAGCACGTAAGTGCATCATCAGATGAACCGAAGCAA
* * * *
9270041 TTCTACTAGCACATCTAGTGCATCATC-GATGAACTGAAGCAAATATATTGAAAAGTAAGTGCAT
66 TTATACTAGCAC-GCAAGTGCATCATCAGATAAACTGAAGCAAATATATTGAAAAGTAAGTGCAT
9270105 CACCGGATGAACTGAAG
130 CACCGGATGAACTGAAG
9270122 TAAATATATT
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
152 109 0.90
153 12 0.10
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (152 bp):
CATCATCGGATGAACCAAAGTAATTATACTAGCACGTAAGTGCATCATCAGATGAACCGAAGCAA
TTATACTAGCACGCAAGTGCATCATCAGATAAACTGAAGCAAATATATTGAAAAGTAAGTGCATC
ACCGGATGAACTGAAGCAAGTA
Found at i:9276411 original size:91 final size:91
Alignment explanation
Indices: 9276255--9276471 Score: 238
Period size: 91 Copynumber: 2.4 Consensus size: 91
9276245 TTCAAGTACC
* * * * * * *
9276255 ACATTGGACATTTTACGAAAGTACAGGTATCAAATGATACACAAATTGATAATTCAAGTACCACA
1 ACATTGGATATTTTATGAAAGTACAAGTACCAAATAATAAACAAATTCATAATTCAAGTACCACA
* *
9276320 TTTAACATTTTTAAAGTATAAATACT
66 TTTAACATTTTCAAAGTACAAATACT
* * * **
9276346 ACATTGGATATTTTATGAAAGTACAAGTACCAAATAATAAACAAATTCATAGTTTATGTGTCACA
1 ACATTGGATATTTTATGAAAGTACAAGTACCAAATAATAAACAAATTCATAATTCAAGTACCACA
* * *
9276411 TTTAACATTTTCCAAGTACATATATT
66 TTTAACATTTTCAAAGTACAAATACT
** *
9276437 ACATTAAATATTTTAT-AACAGTACATGTACCAAAT
1 ACATTGGATATTTTATGAA-AGTACAAGTACCAAAT
9276472 GTTACATTAT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
90 2 0.02
91 103 0.98
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (91 bp):
ACATTGGATATTTTATGAAAGTACAAGTACCAAATAATAAACAAATTCATAATTCAAGTACCACA
TTTAACATTTTCAAAGTACAAATACT
Found at i:9286152 original size:4 final size:4
Alignment explanation
Indices: 9286145--9286188 Score: 79
Period size: 4 Copynumber: 11.0 Consensus size: 4
9286135 GGATTTAATT
*
9286145 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTGG TTTG TTTG TTTG
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG
9286189 ATTATTAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.27, T:0.73
Consensus pattern (4 bp):
TTTG
Found at i:9290438 original size:12 final size:12
Alignment explanation
Indices: 9290421--9290448 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
9290411 TAGAACTTCC
9290421 GTAATATTTTGT
1 GTAATATTTTGT
9290433 GTAATATTTTGT
1 GTAATATTTTGT
9290445 GTAA
1 GTAA
9290449 CATTAGAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.54
Consensus pattern (12 bp):
GTAATATTTTGT
Found at i:9302251 original size:12 final size:12
Alignment explanation
Indices: 9302234--9302271 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
9302224 GAATGCGTGT
9302234 GTCTGCGTGTGC
1 GTCTGCGTGTGC
9302246 GTCTGCGTGTGC
1 GTCTGCGTGTGC
9302258 GTCTGCGTGTGC
1 GTCTGCGTGTGC
9302270 GT
1 GT
9302272 GCGTGCGTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.24, G:0.42, T:0.34
Consensus pattern (12 bp):
GTCTGCGTGTGC
Found at i:9302265 original size:24 final size:24
Alignment explanation
Indices: 9302227--9302280 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
9302217 AAAACAAGAA
9302227 TGCGTGTGTCTGCGTGTGCGT-C-
1 TGCGTGTGTCTGCGTGTGCGTGCG
9302249 TGCGTGTGCGTCTGCGTGTGCGTGCG
1 TGCGTGT--GTCTGCGTGTGCGTGCG
9302275 TGCGTG
1 TGCGTG
9302281 CGTGCGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.25
24 14 0.50
25 1 0.04
26 6 0.21
ACGTcount: A:0.00, C:0.22, G:0.44, T:0.33
Consensus pattern (24 bp):
TGCGTGTGTCTGCGTGTGCGTGCG
Found at i:9302272 original size:6 final size:6
Alignment explanation
Indices: 9302237--9302272 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
9302227 TGCGTGTGTC
* *
9302237 TGCGTG TGCGTC TGCGTG TGCGTC TGCGTG TGCGTG
1 TGCGTG TGCGTG TGCGTG TGCGTG TGCGTG TGCGTG
9302273 CGTGCGTGCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.22, G:0.44, T:0.33
Consensus pattern (6 bp):
TGCGTG
Found at i:9304061 original size:3 final size:3
Alignment explanation
Indices: 9304053--9304113 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
9304043 AATCTTATGG
9304053 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9304101 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
9304114 GGGTTAAATG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9306072 original size:19 final size:21
Alignment explanation
Indices: 9306045--9306088 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
9306035 TTTTTCATTC
*
9306045 TAAAATTTTTC-AT-TTTTTT
1 TAAAATTTTTCTATATTATTT
*
9306064 TAAATTTTTTCTATATTATTT
1 TAAAATTTTTCTATATTATTT
9306085 TAAA
1 TAAA
9306089 GTATGTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 2 0.10
21 9 0.43
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (21 bp):
TAAAATTTTTCTATATTATTT
Found at i:9309411 original size:18 final size:19
Alignment explanation
Indices: 9309388--9309426 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
9309378 ATTTTAAGTT
9309388 AACAAATAATATA-AATTA
1 AACAAATAATATAGAATTA
**
9309406 AACAAATTTTATAGAATTA
1 AACAAATAATATAGAATTA
9309425 AA
1 AA
9309427 GGCCACCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (19 bp):
AACAAATAATATAGAATTA
Found at i:9318984 original size:23 final size:24
Alignment explanation
Indices: 9318937--9318982 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
9318927 GAAAAATATT
9318937 AAATATATATATTTTTTATTTTTA
1 AAATATATATATTTTTTATTTTTA
9318961 AAATATA-ATAGTTTTTTATTTT
1 AAATATATATA-TTTTTTATTTT
9318983 AAGTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATATATATTTTTTATTTTTA
Found at i:9319191 original size:16 final size:16
Alignment explanation
Indices: 9319170--9319211 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
9319160 AATAATTTGA
*
9319170 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
9319186 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
9319202 TAGTTTTAAT
1 TAATTTTAAT
9319212 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:9319195 original size:22 final size:23
Alignment explanation
Indices: 9319185--9319240 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
9319175 TTACTAACAA
* * *
9319185 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
9319207 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
9319230 TTAATTTTAAT
1 TTAATTTTAAT
9319241 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:9319200 original size:59 final size:66
Alignment explanation
Indices: 9319079--9319203 Score: 165
Period size: 66 Copynumber: 2.0 Consensus size: 66
9319069 TTTTGTTACA
9319079 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAAATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA-GTTAAATTTTA-TACAACAATT
9319144 AAT
64 AAT
* *
9319147 ACAATT-A-ACAATTAATAATTTGATAATTTTACTAA-C-AA-TT-AATTTTA-ATAACAATTA
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAAATTTTATACAACAATTA
9319204 GTTTTAATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
59 9 0.16
61 7 0.13
62 2 0.04
64 2 0.04
65 1 0.02
66 27 0.49
67 1 0.02
68 6 0.11
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (66 bp):
ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAAATTTTATACAACAATTAA
T
Found at i:9319403 original size:21 final size:21
Alignment explanation
Indices: 9319379--9319425 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
9319369 TATGGGCCTT
9319379 GCCCAAACTCGGCCCGGCCCC
1 GCCCAAACTCGGCCCGGCCCC
* *
9319400 GCCCGAACTCGGCCCGGCCCG
1 GCCCAAACTCGGCCCGGCCCC
9319421 GCCCA
1 GCCCA
9319426 TGGACAGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.55, G:0.28, T:0.04
Consensus pattern (21 bp):
GCCCAAACTCGGCCCGGCCCC
Found at i:9320910 original size:19 final size:19
Alignment explanation
Indices: 9320854--9320910 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
9320844 TATTTTAAAC
9320854 TAAAAAATATTCAAAATTTTA
1 TAAAAAATA-T-AAAATTTTA
**
9320875 -AAACAAATATATGATTTTA
1 TAAA-AAATATAAAATTTTA
9320894 TAAAAAATATAAAATTT
1 TAAAAAATATAAAATTT
9320911 ATTTTATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 18 0.60
20 7 0.23
21 5 0.17
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (19 bp):
TAAAAAATATAAAATTTTA
Found at i:9322209 original size:8 final size:7
Alignment explanation
Indices: 9322190--9322218 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
9322180 GTTGAGAAAG
9322190 TAAAAAA
1 TAAAAAA
9322197 TAAAAAA
1 TAAAAAA
9322204 TAAAAAA
1 TAAAAAA
9322211 TAAAAAA
1 TAAAAAA
9322218 T
1 T
9322219 TAAATTCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:9335110 original size:45 final size:45
Alignment explanation
Indices: 9335036--9335153 Score: 182
Period size: 45 Copynumber: 2.6 Consensus size: 45
9335026 GCTATAAACA
* *
9335036 AAAAATGAGTAAGACCCTAGCTGAAAGATGTTATGGCATCATGAT
1 AAAAGTGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGAT
* * *
9335081 AAAAGTGAGAAAGACCATAGTTGAAAGATGTTATTGCATCATGAT
1 AAAAGTGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGAT
*
9335126 AAAAGTGAGTAAGACCATAGCTAAAAGA
1 AAAAGTGAGTAAGACCATAGCTGAAAGA
9335154 CGCTATGATA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (45 bp):
AAAAGTGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGAT
Found at i:9335349 original size:27 final size:27
Alignment explanation
Indices: 9335305--9335366 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
9335295 ACGACATCAT
*
9335305 AGGTAGTCCACTAGGACACTAAATACG
1 AGGTAGTCCACGAGGACACTAAATACG
*
9335332 AGGTAGTCCACCGA-GACACTAAGTACG
1 AGGTAGTCCA-CGAGGACACTAAATACG
*
9335359 TGGTAGTC
1 AGGTAGTC
9335367 AGCTGGGACT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (27 bp):
AGGTAGTCCACGAGGACACTAAATACG
Found at i:9341325 original size:101 final size:101
Alignment explanation
Indices: 9341150--9341334 Score: 334
Period size: 101 Copynumber: 1.8 Consensus size: 101
9341140 GTAACTATTC
* *
9341150 AGACGTAAGACCATGGTTGGACCATGGCAGTGTATATATGTAAGACCATAGCTGCGCTATGACAT
1 AGACGTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGCTGCGCTATGACAT
9341215 TCTGATGATAAGACCATAACTAGGTTATGGCACTAT
66 TCTGATGATAAGACCATAACTAGGTTATGGCACTAT
* *
9341251 AGACGTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGTTGGGCTATGACAT
1 AGACGTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGCTGCGCTATGACAT
9341316 TCTGATGATAAGACCATAA
66 TCTGATGATAAGACCATAA
9341335 TTGGGCTATA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 80 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (101 bp):
AGACGTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGCTGCGCTATGACAT
TCTGATGATAAGACCATAACTAGGTTATGGCACTAT
Found at i:9341379 original size:101 final size:100
Alignment explanation
Indices: 9341173--9341481 Score: 257
Period size: 101 Copynumber: 3.1 Consensus size: 100
9341163 TGGTTGGACC
* * * * *
9341173 ATGGCAGTGTATATATGTAAGACCATAGCTGCGCTATGACATTCTGATGATAAGACCATAACTAG
1 ATGGCAATGTATACATGTAAGACCATAGTTGGGCTATGACATTCTGATGATAAGACCATAACTGG
* * * * * *** ***
9341238 GTTATGGCACTATAGACG-TAAGACCATGGTTGGACC
66 GCTATAG-ATTCT-GATGATAAGACCATAACTGGGTT
*
9341274 ATGGCAATGTATACATGTAAGACCATAGTTGGGCTATGACATTCTGATGATAAGACCATAATTGG
1 ATGGCAATGTATACATGTAAGACCATAGTTGGGCTATGACATTCTGATGATAAGACCATAACTGG
9341339 GCTATAAGATTCTGATGATAAGACCATAACTGGGTT
66 GCTAT-AGATTCTGATGATAAGACCATAACTGGGTT
* * * * * * * * * * *
9341375 ATGGC-A-CTATAGACGTAAGACCATGGTTGGACCATGGCTGTGTATACATG-TAAGACCATAGC
1 ATGGCAATGTATACATGTAAGACCATAGTTGGGCTATGAC-AT-TCT-GATGATAAGACCATAAC
* *
9341437 TGGGCTATGATATTCTGATGATAAGACCATAACAGGGTT
63 TGGGCTAT-AGATTCTGATGATAAGACCATAACTGGGTT
9341476 ATGGCA
1 ATGGCA
9341482 CTATGAACGT
Statistics
Matches: 170, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
99 25 0.15
100 5 0.03
101 136 0.80
102 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (100 bp):
ATGGCAATGTATACATGTAAGACCATAGTTGGGCTATGACATTCTGATGATAAGACCATAACTGG
GCTATAGATTCTGATGATAAGACCATAACTGGGTT
Found at i:9341430 original size:134 final size:134
Alignment explanation
Indices: 9341190--9341469 Score: 470
Period size: 134 Copynumber: 2.1 Consensus size: 134
9341180 TGTATATATG
* *
9341190 TAAGACCATAGCTGCGCTATGACATTCTGATGATAAGACCATAACTAGGTTATGGCACTATAGAC
1 TAAGACCATAACTGCGCTATAACATTCTGATGATAAGACCATAACTAGGTTATGGCACTATAGAC
*
9341255 GTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGTTGGGCTATGACATTCTG
66 GTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGCTGGGCTATGACATTCTG
9341320 ATGA
131 ATGA
* * * *
9341324 TAAGACCATAATTGGGCTATAAGATTCTGATGATAAGACCATAACTGGGTTATGGCACTATAGAC
1 TAAGACCATAACTGCGCTATAACATTCTGATGATAAGACCATAACTAGGTTATGGCACTATAGAC
** *
9341389 GTAAGACCATGGTTGGACCATGGCTGTGTATACATGTAAGACCATAGCTGGGCTATGATATTCTG
66 GTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGCTGGGCTATGACATTCTG
9341454 ATGA
131 ATGA
9341458 TAAGACCATAAC
1 TAAGACCATAAC
9341470 AGGGTTATGG
Statistics
Matches: 135, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
134 135 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (134 bp):
TAAGACCATAACTGCGCTATAACATTCTGATGATAAGACCATAACTAGGTTATGGCACTATAGAC
GTAAGACCATGGTTGGACCATGGCAATGTATACATGTAAGACCATAGCTGGGCTATGACATTCTG
ATGA
Found at i:9341467 original size:33 final size:33
Alignment explanation
Indices: 9341190--9341467 Score: 141
Period size: 33 Copynumber: 8.3 Consensus size: 33
9341180 TGTATATATG
* *
9341190 TAAGACCATAGCTGCGCTATGACATTCTGATGA
1 TAAGACCATAGTTGGGCTATGACATTCTGATGA
** * * * * * *
9341223 TAAGACCATAACTAGGTTATGGCACTATAGACG-
1 TAAGACCATAGTTGGGCTATGACATTCT-GATGA
* * * * * *
9341256 TAAGACCATGGTTGGACCATGGCAATGTATACATG-
1 TAAGACCATAGTTGGGCTATGAC-AT-TCT-GATGA
9341291 TAAGACCATAGTTGGGCTATGACATTCTGATGA
1 TAAGACCATAGTTGGGCTATGACATTCTGATGA
* * *
9341324 TAAGACCATAATTGGGCTATAAGATTCTGATGA
1 TAAGACCATAGTTGGGCTATGACATTCTGATGA
** * * * * *
9341357 TAAGACCATAACTGGGTTATGGCACTATAGACG-
1 TAAGACCATAGTTGGGCTATGACATTCT-GATGA
* * * * * * *
9341390 TAAGACCATGGTTGGACCATGGCTGTGTATACATG-
1 TAAGACCATAGTTGGGCTATGAC-AT-TCT-GATGA
* *
9341425 TAAGACCATAGCTGGGCTATGATATTCTGATGA
1 TAAGACCATAGTTGGGCTATGACATTCTGATGA
9341458 TAAGACCATA
1 TAAGACCATA
9341468 ACAGGGTTAT
Statistics
Matches: 183, Mismatches: 54, Indels: 16
0.72 0.21 0.06
Matches are distributed among these distances:
32 6 0.03
33 119 0.65
34 10 0.05
35 48 0.26
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (33 bp):
TAAGACCATAGTTGGGCTATGACATTCTGATGA
Found at i:9341495 original size:134 final size:134
Alignment explanation
Indices: 9341221--9341499 Score: 418
Period size: 134 Copynumber: 2.1 Consensus size: 134
9341211 ACATTCTGAT
9341221 GATAAGACCATAACTAGGTTATGGCACTATAGACGTAAGACCATGGTTGGACCATGGCAATGTAT
1 GATAAGACCATAACTAGGTTATGGCACTATAGACGTAAGACCATGGTTGGACCATGGCAATGTAT
* ** * *
9341286 ACATGTAAGACCATAGTTGGGCTATGACATTCTGATGATAAGACCATAATTGGGCTATAAGATTC
66 ACATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAACAGGGCTATAAGACTA
*
9341351 TGAT
131 TGAC
* **
9341355 GATAAGACCATAACTGGGTTATGGCACTATAGACGTAAGACCATGGTTGGACCATGGCTGTGTAT
1 GATAAGACCATAACTAGGTTATGGCACTATAGACGTAAGACCATGGTTGGACCATGGCAATGTAT
* * *
9341420 ACATGTAAGACCATAGCTGGGCTATGATATTCTGATGATAAGACCATAACAGGGTTAT-GGCACT
66 ACATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAACAGGGCTATAAG-ACT
9341484 ATGAAC
130 ATG-AC
9341490 G-TAAGACCAT
1 GATAAGACCAT
9341500 GGCAAGGCCA
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
133 1 0.01
134 128 0.98
135 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (134 bp):
GATAAGACCATAACTAGGTTATGGCACTATAGACGTAAGACCATGGTTGGACCATGGCAATGTAT
ACATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAACAGGGCTATAAGACTA
TGAC
Found at i:9341511 original size:101 final size:99
Alignment explanation
Indices: 9341323--9341534 Score: 284
Period size: 101 Copynumber: 2.1 Consensus size: 99
9341313 CATTCTGATG
** *
9341323 ATAAGACCATAATTGGGCTATAAGATTCTGATGATAAGACCATAACTGGGTTATGGCACTATAGA
1 ATAAGACCATAGCTGGGCTATAAGATTCTGATGATAAGACCATAACAGGGTTATGGCACTATAGA
** **
9341388 CGTAAGACCATGGTTGGACCATGGCTGTGTATACAT
66 CGTAAGACCATGGAAGGACCATGGCAATG--TACAT
* * *
9341424 GTAAGACCATAGCTGGGCTATGATATTCTGATGATAAGACCATAACAGGGTTATGGCACTAT-GA
1 ATAAGACCATAGCTGGGCTATAAGATTCTGATGATAAGACCATAACAGGGTTATGGCACTATAG-
9341488 ACGTAAGACCATGGCAAGG-CCATGGCAATGTACAT
65 ACGTAAGACCATGG-AAGGACCATGGCAATGTACAT
9341523 ATAAGACCATAG
1 ATAAGACCATAG
9341535 TTGAACTATG
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
99 16 0.16
100 1 0.01
101 79 0.81
102 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (99 bp):
ATAAGACCATAGCTGGGCTATAAGATTCTGATGATAAGACCATAACAGGGTTATGGCACTATAGA
CGTAAGACCATGGAAGGACCATGGCAATGTACAT
Found at i:9341528 original size:134 final size:134
Alignment explanation
Indices: 9341221--9341547 Score: 343
Period size: 134 Copynumber: 2.4 Consensus size: 134
9341211 ACATTCTGAT
* ** * * *
9341221 GATAAGACCATAACTAGGTTATGGCACTATAGACGTAAGACCATGGTTGGACCATGGCAATGTAT
1 GATAAGACCATAACAAGGCCATGGCAATATACACATAAGACCATGGTTGGACCATGGCAATGTAT
* ** * *
9341286 ACATGTAAGACCATAGTTGGGCTATGACATTCTGATGATAAGACCATAATTGGGCTATAAGATTC
66 ACATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAACAGGGCTATAAGACTA
*
9341351 TGAT
131 TGAC
** ** * * * **
9341355 GATAAGACCATAACTGGGTTATGGCACTATAGACGTAAGACCATGGTTGGACCATGGCTGTGTAT
1 GATAAGACCATAACAAGGCCATGGCAATATACACATAAGACCATGGTTGGACCATGGCAATGTAT
* * *
9341420 ACATGTAAGACCATAGCTGGGCTATGATATTCTGATGATAAGACCATAACAGGGTTAT-GGCACT
66 ACATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAACAGGGCTATAAG-ACT
9341484 ATGAAC
130 ATG-AC
** * * * * *
9341490 G-TAAGACCATGGCAAGGCCATGGCAATGTACATATAAGACCATAGTTGAACTATGGCA
1 GATAAGACCATAACAAGGCCATGGCAATATACACATAAGACCATGGTTGGACCATGGCA
9341548 CAATATGAAA
Statistics
Matches: 164, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
133 1 0.01
134 161 0.98
135 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (134 bp):
GATAAGACCATAACAAGGCCATGGCAATATACACATAAGACCATGGTTGGACCATGGCAATGTAT
ACATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAACAGGGCTATAAGACTA
TGAC
Found at i:9344719 original size:4 final size:4
Alignment explanation
Indices: 9344710--9344862 Score: 107
Period size: 4 Copynumber: 37.0 Consensus size: 4
9344700 GAAGGAGAGG
* * * *
9344710 GAAA GAAA GAAA GAAA GAAA GAGA GAAA GAAA GGAA GAAA GGAGAG GGAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA
* * *
9344760 GAAA GAAAA GAAG GAAA GAAA GGGAAA G-GA GAAGA GAAA AAAA GAAA
1 GAAA G-AAA GAAA GAAA GAAA --GAAA GAAA GAA-A GAAA GAAA GAAA
* * *
9344807 GAAA G-AA G-AA GAAGA GAAG GAAAA GAGAA GAAA -AAC GAAA GAAA GAAG
1 GAAA GAAA GAAA GAA-A GAAA G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA
9344855 GAAA GAAA
1 GAAA GAAA
9344863 TGGAAGGAGA
Statistics
Matches: 117, Mismatches: 20, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
3 10 0.09
4 80 0.68
5 22 0.19
6 5 0.04
ACGTcount: A:0.67, C:0.01, G:0.33, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:9344762 original size:38 final size:38
Alignment explanation
Indices: 9344720--9344888 Score: 145
Period size: 39 Copynumber: 4.4 Consensus size: 38
9344710 GAAAGAAAGA
* *
9344720 AAGAAAGAAAGAGAGAAAGAAAGGAAGAAAGGAGAGGG
1 AAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGGAGAGAG
*
9344758 AAGAAAGAAAAGAAGGAAAGAAAGG--GAAAGGAGA-AG
1 AAGAAAG-AAAGAAAGAAAGAAAGGAAGAAAGGAGAGAG
* * *
9344794 -AGAAAAAAAGAAAGAAAGAAGAAGAAGAGAAGGAAAAGAG
1 AAGAAAGAAAGAAAGAAAGAA-AGGAAGA-AAGG-AGAGAG
*
9344834 AAGAAA-AACGAAAGAAAG-AAGGAAAGAAATGGA-AGGAG
1 AAGAAAGAAAGAAAGAAAGAAAGG-AAGAAA-GGAGA-GAG
* *
9344872 AAGAAAAAAAAAAAGAA
1 AAGAAAGAAAGAAAGAA
9344889 GAAGAAGAAG
Statistics
Matches: 108, Mismatches: 11, Indels: 23
0.76 0.08 0.16
Matches are distributed among these distances:
34 13 0.12
35 7 0.06
36 1 0.01
37 12 0.11
38 25 0.23
39 32 0.30
40 13 0.12
41 5 0.05
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.01
Consensus pattern (38 bp):
AAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGGAGAGAG
Found at i:9344772 original size:26 final size:26
Alignment explanation
Indices: 9344710--9344878 Score: 100
Period size: 26 Copynumber: 6.3 Consensus size: 26
9344700 GAAGGAGAGG
* *
9344710 GAAAG-AAAGAAAGAAAGAAAGAG-A
1 GAAAGAAAAGAAGGAAAGAAAGGGAA
* *
9344734 GAAAGAAAGGAA-GAAAGGAGAGGGAA
1 GAAAGAAAAGAAGGAAA-GAAAGGGAA
9344760 GAAAGAAAAGAAGGAAAGAAAGGGAAA
1 GAAAGAAAAGAAGGAAAGAAAGGG-AA
* *
9344787 GGAGAAGAGAAAAAAAGAAAGAAA--GAA
1 -GA-AAGA-AAAGAAGGAAAGAAAGGGAA
* **
9344814 G-AAGAAGAGAAGGAAAAGAGAAGAAAAA
1 GAAAGAAAAGAAGG-AAAGA-AAG-GGAA
*
9344842 CGAAAG-AAAGAAGGAAAGAAATGGAA
1 -GAAAGAAAAGAAGGAAAGAAAGGGAA
9344868 GGAGAAGAAAA
1 -GA-AAGAAAA
9344879 AAAAAAAGAA
Statistics
Matches: 112, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
23 5 0.04
24 18 0.16
25 12 0.11
26 23 0.21
27 13 0.12
28 13 0.12
29 12 0.11
30 16 0.14
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.01
Consensus pattern (26 bp):
GAAAGAAAAGAAGGAAAGAAAGGGAA
Found at i:9344779 original size:31 final size:34
Alignment explanation
Indices: 9344707--9344813 Score: 101
Period size: 34 Copynumber: 3.0 Consensus size: 34
9344697 GCAGAAGGAG
* *
9344707 AGGGAAAGAAAGAA-AGAAAGAAAG-AGAGAAAGAA
1 AGGGAAAG-GAGAAGAGAAAAAAAGAAG-GAAAGAA
*
9344741 AGGAAGAAAGGAGAGGGAAGAAAGAAAAGAAGGAAAGAA
1 AGG--GAAAGGAGA-AG-AGAAA-AAAAGAAGGAAAGAA
*
9344780 AGGGAAAGGAGAAGAGAAAAAAAGAAAGAAAGAA
1 AGGGAAAGGAGAAGAGAAAAAAAGAAGGAAAGAA
9344814 GAAGAAGAGA
Statistics
Matches: 61, Mismatches: 5, Indels: 14
0.76 0.06 0.17
Matches are distributed among these distances:
34 17 0.28
35 8 0.13
36 6 0.10
37 9 0.15
38 5 0.08
39 14 0.23
40 2 0.03
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (34 bp):
AGGGAAAGGAGAAGAGAAAAAAAGAAGGAAAGAA
Found at i:9344805 original size:43 final size:41
Alignment explanation
Indices: 9344713--9344922 Score: 180
Period size: 38 Copynumber: 5.3 Consensus size: 41
9344703 GGAGAGGGAA
*
9344713 AGAAAGAAAGAAAGAAAG-AGAGAAAGAAA-GGAA-GA-AAG
1 AGAAAAAAAGAAAGAAAGAAG-GAAAGAAAGGGAAGGAGAAG
***
9344751 -GAGAGGGAAGAAAGAAAAGAAGGAAAGAAAGGGAAAGGAGAAG
1 AGA-AAAAAAGAAAG-AAAGAAGGAAAGAAAGGG-AAGGAGAAG
* *
9344794 AGAAAAAAAGAAAGAAAGAA-G-AAG-AAGAGAAGGAAAAG
1 AGAAAAAAAGAAAGAAAGAAGGAAAGAAAGGGAAGGAGAAG
*
9344832 AGAAGAAAAACGAAAGAAAGAAGGAAAGAAATGGAAGGAGAAG
1 AGAA-AAAAA-GAAAGAAAGAAGGAAAGAAAGGGAAGGAGAAG
*
9344875 A-AAAAAAA-AAAG-AAGAA-G-AAGAAGAGGGAAGGA-AGG
1 AGAAAAAAAGAAAGAAAGAAGGAAAGAA-AGGGAAGGAGAAG
9344911 A-AAAAAAAGAAA
1 AGAAAAAAAGAAA
9344923 ATAAAGTAAT
Statistics
Matches: 145, Mismatches: 12, Indels: 31
0.77 0.06 0.16
Matches are distributed among these distances:
36 15 0.10
37 14 0.10
38 26 0.18
39 25 0.17
40 18 0.12
41 9 0.06
42 13 0.09
43 23 0.16
44 2 0.01
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.00
Consensus pattern (41 bp):
AGAAAAAAAGAAAGAAAGAAGGAAAGAAAGGGAAGGAGAAG
Found at i:9344841 original size:11 final size:11
Alignment explanation
Indices: 9344788--9344850 Score: 53
Period size: 11 Copynumber: 5.8 Consensus size: 11
9344778 AAAGGGAAAG
9344788 GAGAAGAGAAAA
1 GAGAAGA-AAAA
9344800 -A-AAGAAAGAA
1 GAGAAGAAA-AA
*
9344810 -AGAAGAAGAA
1 GAGAAGAAAAA
*
9344820 GAGAAGGAAAA
1 GAGAAGAAAAA
9344831 GAGAAGAAAAA
1 GAGAAGAAAAA
9344842 CGA-AAGAAA
1 -GAGAAGAAA
9344851 GAAGGAAAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
9 2 0.05
10 9 0.21
11 30 0.70
12 2 0.05
ACGTcount: A:0.70, C:0.02, G:0.29, T:0.00
Consensus pattern (11 bp):
GAGAAGAAAAA
Found at i:9344891 original size:38 final size:40
Alignment explanation
Indices: 9344761--9344918 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 40
9344751 GAGAGGGAAG
9344761 AAAGAAAAGAAGGAAAGAAAGGGAAAGGAGAAGAGAAAAAAA
1 AAAG-AAAGAAGGAAAGAAAGGGAAAGGAGAAGA-AAAAAAA
* * **
9344803 GAAAGAAAGAAGAAGAAGAGAA-GGAAAAGAGAAG-AAAAACG
1 -AAAGAAAGAAGGA-AAGA-AAGGGAAAGGAGAAGAAAAAAAA
*
9344844 AAAGAAAGAAGGAAAGAAATGG-AAGGAGAAGAAAAAAAA
1 AAAGAAAGAAGGAAAGAAAGGGAAAGGAGAAGAAAAAAAA
*
9344883 AAAG-AAGAA-G-AAGAAGAGGG-AAGGA-AGGAAAAAAAA
1 AAAGAAAGAAGGAAAGAA-AGGGAAAGGAGAAGAAAAAAAA
9344919 GAAAATAAAG
Statistics
Matches: 100, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
36 15 0.15
37 9 0.09
38 15 0.15
39 15 0.15
40 12 0.12
41 5 0.05
42 8 0.08
43 19 0.19
44 2 0.02
ACGTcount: A:0.68, C:0.01, G:0.31, T:0.01
Consensus pattern (40 bp):
AAAGAAAGAAGGAAAGAAAGGGAAAGGAGAAGAAAAAAAA
Found at i:9346975 original size:17 final size:17
Alignment explanation
Indices: 9346953--9346989 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
9346943 ATGGGGTAAG
9346953 ATGCTATTCTAATATTC
1 ATGCTATTCTAATATTC
9346970 ATGCTATTCTAATATTC
1 ATGCTATTCTAATATTC
9346987 ATG
1 ATG
9346990 ACATCTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (17 bp):
ATGCTATTCTAATATTC
Found at i:9347590 original size:18 final size:18
Alignment explanation
Indices: 9347567--9347602 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9347557 CAGCCAGATC
*
9347567 CGAAACAATTTGGATTTG
1 CGAAACAATCTGGATTTG
9347585 CGAAACAATCTGGATTTG
1 CGAAACAATCTGGATTTG
9347603 TCGGTTCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (18 bp):
CGAAACAATCTGGATTTG
Found at i:9348014 original size:15 final size:14
Alignment explanation
Indices: 9347974--9348002 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9347964 TTCTTGTATC
9347974 AATTTAATTATTCT
1 AATTTAATTATTCT
9347988 AATTTAATTATTCT
1 AATTTAATTATTCT
9348002 A
1 A
9348003 GTTTTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:9350396 original size:18 final size:18
Alignment explanation
Indices: 9350352--9350396 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
9350342 ATCCCAATGA
*
9350352 TCACCACCACCTTCTTCT
1 TCACCACCACATTCTTCT
* *
9350370 TCGCAACCACATTCTTCT
1 TCACCACCACATTCTTCT
9350388 TCACCACCA
1 TCACCACCA
9350397 ACCATATCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.22, C:0.47, G:0.02, T:0.29
Consensus pattern (18 bp):
TCACCACCACATTCTTCT
Found at i:9351027 original size:31 final size:32
Alignment explanation
Indices: 9350975--9351124 Score: 92
Period size: 38 Copynumber: 4.3 Consensus size: 32
9350965 AATACCTTAT
9350975 TTTCTTTTTTTTCCTTCCTT-CCCTCTT-CTTCTTC
1 TTTCTTTTTTTT-C-TCCTTCCCCT-TTCCTT-TTC
9351009 TTTCTTTTTTTTCT-CTTCCCCTTTCCTTTTC
1 TTTCTTTTTTTTCTCCTTCCCCTTTCCTTTTC
9351040 TTTCCTTATTTTTCTTTCTTTCC-TCCCCTTTCCTTTTC
1 TTT-C---TTTTT-TTTC--TCCTTCCCCTTTCCTTTTC
* *
9351078 TTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCTTTTC
1 TTT-CTT-TTTTT-TCTCCTT-C-C-CCTTTCCTTTTC
*
9351116 CTTCTTTTT
1 TTTCTTTTT
9351125 CTTGCTTCCT
Statistics
Matches: 97, Mismatches: 3, Indels: 30
0.75 0.02 0.23
Matches are distributed among these distances:
31 11 0.11
32 9 0.09
33 1 0.01
34 14 0.14
35 10 0.10
36 12 0.12
37 4 0.04
38 35 0.36
39 1 0.01
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTCTTTTTTTTCTCCTTCCCCTTTCCTTTTC
Found at i:9351057 original size:18 final size:18
Alignment explanation
Indices: 9351036--9351146 Score: 86
Period size: 18 Copynumber: 6.1 Consensus size: 18
9351026 CCCCTTTCCT
*
9351036 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTCTTTTTC
* * *
9351054 TTTCTTTCCTCCCCTTTCC
1 TTTCTTTCCT-TCTTTTTC
9351073 TTTTCTTTCCTTCTTTTTC
1 -TTTCTTTCCTTCTTTTTC
*
9351092 TTTCTTTCC-TCTCCTTTC
1 TTTCTTTCCTTCT-TTTTC
*
9351110 -CT-TTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
*
9351126 TTGC-TTCCTTTCTTTCTTC
1 TTTCTTTCC-TTCTTT-TTC
9351145 TT
1 TT
9351147 CTTCCCCTCT
Statistics
Matches: 73, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
16 9 0.12
17 11 0.15
18 29 0.40
19 14 0.19
20 10 0.14
ACGTcount: A:0.01, C:0.32, G:0.01, T:0.66
Consensus pattern (18 bp):
TTTCTTTCCTTCTTTTTC
Found at i:9351098 original size:28 final size:28
Alignment explanation
Indices: 9351067--9351146 Score: 76
Period size: 34 Copynumber: 2.8 Consensus size: 28
9351057 CTTTCCTCCC
*
9351067 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
1 CTTTCCTTTTCTTTCCTTCTTTTTCTTG
9351095 CTTTCCTCTCCTTTCCTTTTCCTTCTTTTTCTTG
1 CTTT-C-CT--TTT-C-TTTCCTTCTTTTTCTTG
9351129 C-TTCC-TTTCTTT-CTTCTT
1 CTTTCCTTTTCTTTCCTTCTT
9351147 CTTCCCCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
25 6 0.13
26 3 0.07
27 1 0.02
28 7 0.16
29 1 0.02
30 2 0.04
31 1 0.02
32 4 0.09
33 3 0.07
34 17 0.38
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTCTTTTTCTTG
Found at i:9351137 original size:38 final size:38
Alignment explanation
Indices: 9351025--9351115 Score: 164
Period size: 38 Copynumber: 2.4 Consensus size: 38
9351015 TTTTTTCTCT
9351025 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
1 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
*
9351063 TCCCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
*
9351101 TCTCCTTTCCTTTTC
1 TCCCCTTTCCTTTTC
9351116 CTTCTTTTTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.01, C:0.36, G:0.00, T:0.63
Consensus pattern (38 bp):
TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
Found at i:9351142 original size:22 final size:23
Alignment explanation
Indices: 9351107--9351149 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
9351097 TTCCTCTCCT
*
9351107 TTCCTTTTCCTTCTTTTTCTTGC
1 TTCCTTTTCCTTCTTCTTCTTGC
*
9351130 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCCTTCTTCTTCTT
9351150 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.00, C:0.30, G:0.02, T:0.67
Consensus pattern (23 bp):
TTCCTTTTCCTTCTTCTTCTTGC
Found at i:9351147 original size:28 final size:30
Alignment explanation
Indices: 9351069--9351150 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 30
9351059 TTCCTCCCCT
*
9351069 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCC-TTTCTTT-CTTCTTCTTCTTTCTTTCC
* *
9351101 TCTCCTTTCCTTT-TCCTTCTT-TTTC-TTGC
1 T-TCCTTT-CTTTCTTCTTCTTCTTTCTTTCC
9351130 TTCCTTTCTTTCTTCTTCTTC
1 TTCCTTTCTTTCTTCTTCTTC
9351151 CCCTCTCCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
27 4 0.10
28 13 0.31
29 4 0.10
30 4 0.10
31 6 0.14
32 4 0.10
33 7 0.17
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (30 bp):
TTCCTTTCTTTCTTCTTCTTCTTTCTTTCC
Found at i:9351236 original size:27 final size:27
Alignment explanation
Indices: 9351198--9351275 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
9351188 ATATTTAAGG
9351198 TGGTGCCGCCAACAGGGAAT-CCTTGTT
1 TGGTGCCGCCAACAGGG-ATCCCTTGTT
* *
9351225 TGGTGCCGCCAACAAGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGATCCCTTGTT
* *
9351252 TGGTGCCGCCAACAGTGTTCCCTT
1 TGGTGCCGCCAACAGGGATCCCTT
9351276 CACCCAGGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.15, C:0.29, G:0.27, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGGATCCCTTGTT
Found at i:9351397 original size:28 final size:27
Alignment explanation
Indices: 9351337--9351397 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
9351327 TTTTTGTTTT
*
9351337 TTATATATTTTGGTAAATAAAAAAAAT
1 TTATATATTTTGGTAAATAAAAAAAAG
9351364 TATATATATTTTGGTAAATAAAAAAAAAG
1 T-TATATATTTTGGTAAAT-AAAAAAAAG
9351393 TTATA
1 TTATA
9351398 ACATTTTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 1 0.03
28 21 0.68
29 9 0.29
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.39
Consensus pattern (27 bp):
TTATATATTTTGGTAAATAAAAAAAAG
Found at i:9351403 original size:29 final size:28
Alignment explanation
Indices: 9351338--9351409 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
9351328 TTTTGTTTTT
*
9351338 TATATATTTTGGTAAATAAAAAAAATTA
1 TATACATTTTGGTAAATAAAAAAAATTA
*
9351366 TATATATTTTGGTAAATAAAAAAAAAGTTA
1 TATACATTTTGGTAAAT-AAAAAAAA-TTA
*
9351396 TA-ACATTTTAGTAA
1 TATACATTTTGGTAA
9351410 TTTTTTATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
28 17 0.43
29 18 0.45
30 5 0.12
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.39
Consensus pattern (28 bp):
TATACATTTTGGTAAATAAAAAAAATTA
Found at i:9362294 original size:14 final size:14
Alignment explanation
Indices: 9362272--9362305 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9362262 TGTTAACATC
* *
9362272 ATTATAATTAACTA
1 ATTAAAATTAAATA
9362286 ATTAAAATTAAATA
1 ATTAAAATTAAATA
9362300 ATTAAA
1 ATTAAA
9362306 TAATATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (14 bp):
ATTAAAATTAAATA
Found at i:9362745 original size:29 final size:30
Alignment explanation
Indices: 9362686--9362745 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
9362676 GGGGGTGGGA
**
9362686 TGGGAGGAGAGTAAAAGTTTTGGGGGGAAG
1 TGGGAGGAGAGTAAAAGTTTTGGGGAAAAG
9362716 TGGGAGG-GAGTAAAAGTTTTGGGGAAAAG
1 TGGGAGGAGAGTAAAAGTTTTGGGGAAAAG
9362745 T
1 T
9362746 AAAGAGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.47, T:0.22
Consensus pattern (30 bp):
TGGGAGGAGAGTAAAAGTTTTGGGGAAAAG
Found at i:9366749 original size:15 final size:15
Alignment explanation
Indices: 9366729--9366759 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9366719 ACATCTATCG
9366729 AAATAGATGAATTAC
1 AAATAGATGAATTAC
9366744 AAATAGATGAATTAC
1 AAATAGATGAATTAC
9366759 A
1 A
9366760 TGCAACATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (15 bp):
AAATAGATGAATTAC
Found at i:9373575 original size:138 final size:140
Alignment explanation
Indices: 9373393--9373679 Score: 519
Period size: 138 Copynumber: 2.1 Consensus size: 140
9373383 AAGCCATTGG
9373393 ATTCTC-AAAAATCCAACAATATTATGAAAACATACTGGTTCAAACACTATATAGACCCAAAAGA
1 ATTCTCTAAAAATCCAACAATATTATGAAAACATACTGGTTCAAACACTATATAGACCCAAAAGA
9373457 TCCAAATTTTATTACCCATTCAACAACCCAAATATTAAAAATTCTTTGACC-AAAGGATTGGG-T
66 TCCAAATTTTATTACCCATTCAACAACCCAAATATTAAAAATTCTTTGACCAAAAGGATTGGGAT
9373520 GAAAACCCAA
131 GAAAACCCAA
*
9373530 ATTCTCTAAAACA-CCAGCAATATTATGAAAACATACTGGTTCAAACACTATATAGACCCAAAAG
1 ATTCTCTAAAA-ATCCAACAATATTATGAAAACATACTGGTTCAAACACTATATAGACCCAAAAG
*
9373594 ATCCAAATTTTATTACCCATTCAACAGCCCAAATATTAAAAATTCTTTGACCAAAAGGATTGGGA
65 ATCCAAATTTTATTACCCATTCAACAACCCAAATATTAAAAATTCTTTGACCAAAAGGATTGGGA
9373659 TGAAAACCCAA
130 TGAAAACCCAA
9373670 ATTCTCTAAA
1 ATTCTCTAAA
9373680 GAAATTTCTA
Statistics
Matches: 144, Mismatches: 2, Indels: 5
0.95 0.01 0.03
Matches are distributed among these distances:
137 6 0.04
138 105 0.73
139 12 0.08
140 21 0.15
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (140 bp):
ATTCTCTAAAAATCCAACAATATTATGAAAACATACTGGTTCAAACACTATATAGACCCAAAAGA
TCCAAATTTTATTACCCATTCAACAACCCAAATATTAAAAATTCTTTGACCAAAAGGATTGGGAT
GAAAACCCAA
Found at i:9375014 original size:22 final size:22
Alignment explanation
Indices: 9374986--9375030 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
9374976 CGTTTGATTC
*
9374986 TATTAAATAAATCAT-TAAAAAA
1 TATTAAAAAAAT-ATCTAAAAAA
9375008 TATTAAAAAAATATCTAAAAAA
1 TATTAAAAAAATATCTAAAAAA
9375030 T
1 T
9375031 TGGTTCAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (22 bp):
TATTAAAAAAATATCTAAAAAA
Found at i:9375030 original size:11 final size:10
Alignment explanation
Indices: 9374986--9375030 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 10
9374976 CGTTTGATTC
9374986 TATTAAATAAA
1 TATTAAA-AAA
9374997 TCATTAAAAAA
1 T-ATTAAAAAA
9375008 TATTAAAAAAA
1 TATT-AAAAAA
9375019 TATCTAAAAAA
1 TAT-TAAAAAA
9375030 T
1 T
9375031 TGGTTCAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 3 0.10
11 21 0.68
12 7 0.23
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (10 bp):
TATTAAAAAA
Found at i:9375556 original size:22 final size:22
Alignment explanation
Indices: 9375510--9375557 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
9375500 TTTGTTAATT
*
9375510 TAAATTTAATGATAAAAACATA
1 TAAATTTAATGATAAAAACAAA
*
9375532 TAAATATTAAT-ATAAAAATAAA
1 TAAAT-TTAATGATAAAAACAAA
9375554 TAAA
1 TAAA
9375558 AATTTCTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
TAAATTTAATGATAAAAACAAA
Found at i:9377834 original size:36 final size:36
Alignment explanation
Indices: 9377783--9377863 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
9377773 AAATGTGATA
* * *
9377783 TTAATATATTTTATATTTATTTAAGTTTTGTTCGGT
1 TTAAAATATTTTATATTTATTCAAGTTTTATTCGGT
*
9377819 TTAAAATATTTTATATTTGTTCAAGTTTTATTCGGT
1 TTAAAATATTTTATATTTATTCAAGTTTTATTCGGT
*
9377855 CTAAAATAT
1 TTAAAATAT
9377864 GAGTTTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.30, C:0.05, G:0.10, T:0.56
Consensus pattern (36 bp):
TTAAAATATTTTATATTTATTCAAGTTTTATTCGGT
Found at i:9389416 original size:30 final size:30
Alignment explanation
Indices: 9389382--9389444 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
9389372 ACTTATTTTA
9389382 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
9389412 TTGTTAATTTTGTTATTATTTTATAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
9389442 TTG
1 TTG
9389445 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:9389581 original size:11 final size:11
Alignment explanation
Indices: 9389567--9389609 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 11
9389557 TATATATTTT
9389567 AAAATTATATA
1 AAAATTATATA
9389578 AAAATAATGATATA
1 AAAAT--T-ATATA
*
9389592 AAAATAATATA
1 AAAATTATATA
9389603 AAAATTA
1 AAAATTA
9389610 ATATGGGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 16 0.59
13 1 0.04
14 10 0.37
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (11 bp):
AAAATTATATA
Found at i:9389592 original size:14 final size:13
Alignment explanation
Indices: 9389572--9389613 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
9389562 ATTTTAAAAT
9389572 TATATAAAAATAA
1 TATATAAAAATAA
9389585 TGATATAAAAATAA
1 T-ATATAAAAATAA
*
9389599 TATA-AAAATTAA
1 TATATAAAAATAA
9389611 TAT
1 TAT
9389614 GGGTAGGCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 10 0.37
13 4 0.15
14 13 0.48
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (13 bp):
TATATAAAAATAA
Found at i:9390380 original size:114 final size:116
Alignment explanation
Indices: 9390177--9390407 Score: 421
Period size: 114 Copynumber: 2.0 Consensus size: 116
9390167 GAAAATTGAG
9390177 AACTTGAAGGAATTAAAAATACGATCCTTGTATTATAAAAAAAAAATTGAAAAAGAAGCATATTT
1 AACTTGAAGGAATTAAAAATACGATCCTTGTATTAT-AAAAAAAAATTGAAAAAGAAGCATATTT
9390242 CACGTTATTCGAGAAAGAGAGTCATATCCAGTAAGTTAGAACACGATGTCTC
65 CACGTTATTCGAGAAAGAGAGTCATATCCAGTAAGTTAGAACACGATGTCTC
*
9390294 AACTTGAAGG-ATTAAAAATACGATCCTTGTATTAT-AAAAAAATTTGAAAAAGAAGCATATTTC
1 AACTTGAAGGAATTAAAAATACGATCCTTGTATTATAAAAAAAAATTGAAAAAGAAGCATATTTC
*
9390357 ACGTTATTCGAGAAATAGAGTCATATCCAGTAAGTTAGAACACGATGTCTC
66 ACGTTATTCGAGAAAGAGAGTCATATCCAGTAAGTTAGAACACGATGTCTC
9390408 GAATTCCCGA
Statistics
Matches: 112, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
114 77 0.69
116 25 0.22
117 10 0.09
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (116 bp):
AACTTGAAGGAATTAAAAATACGATCCTTGTATTATAAAAAAAAATTGAAAAAGAAGCATATTTC
ACGTTATTCGAGAAAGAGAGTCATATCCAGTAAGTTAGAACACGATGTCTC
Found at i:9390937 original size:10 final size:10
Alignment explanation
Indices: 9390922--9390953 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
9390912 AAAAATTAAA
9390922 ATATATGTAT
1 ATATATGTAT
9390932 ATATATGTAT
1 ATATATGTAT
*
9390942 ATATATATAT
1 ATATATGTAT
9390952 AT
1 AT
9390954 GTATTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (10 bp):
ATATATGTAT
Found at i:9391263 original size:3 final size:3
Alignment explanation
Indices: 9391255--9391312 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
9391245 AAAAACAATT
* *
9391255 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9391303 ATA ATA ATA A
1 ATA ATA ATA A
9391313 AATTGCTAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:9393200 original size:44 final size:43
Alignment explanation
Indices: 9393152--9393718 Score: 218
Period size: 44 Copynumber: 13.1 Consensus size: 43
9393142 TAACCTCAAA
* *
9393152 GAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAACTTCAGG
1 GAGATAAGAT-CTTGATTTTGATCTGCTCCACTGTAACTTCAGG
* ** * *
9393196 GAGATAGGATAGTG-TCTTCGATCTGCTCCGCTGTAA-TCTCAGG
1 GAGATAAGATCTTGAT-TTTGATCTGCTCCACTGTAACT-TCAGG
** ** *
9393239 GAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGG
1 GAGATAAGATCT-TGATTTTGATCTGCTCCACTGTAACTTCAGG
* * * *
9393283 GAGATAAGATC-TGAAATTCTCCGGTCTACTCCACTGTAACCTCAGG
1 GAGATAAGATCTTG--ATT-T-TGATCTGCTCCACTGTAACTTCAGG
* * * * * *
9393329 GAAATAAGA-CCTGA-TGTGATCTTCTCTACTGTAACTTCAGA
1 GAGATAAGATCTTGATTTTGATCTGCTCCACTGTAACTTCAGG
* * * * *
9393370 GAGATAAGATC----CTTTAATCCGCTCCATTGTAA-TCTCAAG
1 GAGATAAGATCTTGATTTTGATCTGCTCCACTGTAACT-TCAGG
* *
9393409 GAGATAGGAT-TACT-ATCTTTGATCTGCTCCGCTGTAATCTT-AGG
1 GAGATAAGATCT--TGAT-TTTGATCTGCTCCACTGTAA-CTTCAGG
** * * *
9393453 GAGATAAGATCTCTGGCTTTAACCTGCTCCACTGTAACCTCAGG
1 GAGATAAGATCT-TGATTTTGATCTGCTCCACTGTAACTTCAGG
* * *
9393497 GAGATAAGATC-TGAAATTCTTCGGTCTACTCCACTGTAACCTCAGG
1 GAGATAAGATCTTG--ATT-TT-GATCTGCTCCACTGTAACTTCAGG
* * * * * * *
9393543 GAAATTAGA-CCTGA-TGTGATCTACTCTACTGTAACTTCAGA
1 GAGATAAGATCTTGATTTTGATCTGCTCCACTGTAACTTCAGG
* * * *
9393584 GAGATAAGATC----CTTTAATAC-GCTCCATTGTAA-TCTCAAG
1 GAGATAAGATCTTGATTTTGAT-CTGCTCCACTGTAACT-TCAGG
9393623 GAGAT-AGAAT-TACT-ATCTTTGATCTGCTCCACTGTAA-TCTCAGG
1 GAGATAAG-ATCT--TGAT-TTTGATCTGCTCCACTGTAACT-TCAGG
* *
9393667 GAGATAAGATC-TGCAATTCTTCAGTCTACTCCACTGTAA-TCTCAGG
1 GAGATAAGATCTTG--ATT-TTGA-TCTGCTCCACTGTAACT-TCAGG
9393713 GAGATA
1 GAGATA
9393719 TGACCTGTAT
Statistics
Matches: 397, Mismatches: 78, Indels: 94
0.70 0.14 0.17
Matches are distributed among these distances:
38 4 0.01
39 49 0.12
40 1 0.00
41 54 0.14
42 10 0.03
43 37 0.09
44 139 0.35
45 14 0.04
46 89 0.22
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
GAGATAAGATCTTGATTTTGATCTGCTCCACTGTAACTTCAGG
Found at i:9393482 original size:214 final size:214
Alignment explanation
Indices: 9393088--9393718 Score: 908
Period size: 214 Copynumber: 2.9 Consensus size: 214
9393078 TTAGGTTTAA
* ** * * * * *
9393088 GTCTACTCCACCGTAATATCAGGGAGATAAGACCTGATGCGATCTACTCTATTGTAACCTCAAAG
1 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAG
* * * * * *
9393153 AGATAAGATCCTTTATTTTAATCTGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCG
66 AGATAAGATCC-----TTTAATCCGCTCCATTGTAATC-TCAAGGAGATAGGATTACTATCTTTG
*
9393216 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
125 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAACCTCA
9393281 GGGAGATAAGATCTGAAATTCTCCG
190 GGGAGATAAGATCTGAAATTCTCCG
*
9393306 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAG
9393371 AGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGC
66 AGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGC
* *
9393436 TCCGCTGTAATCTTAGGGAGATAAGATCTCTGGCTTTAACCTGCTCCACTGTAACCTCAGGGAGA
131 TCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAACCTCAGGGAGA
*
9393501 TAAGATCTGAAATTCTTCG
196 TAAGATCTGAAATTCTCCG
*
9393520 GTCTACTCCACTGTAACCTCAGGGAAATTAGACCTGATGTGATCTACTCTACTGTAACTTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAG
* *
9393585 AGATAAGATCCTTTAATACGCTCCATTGTAATCTCAAGGAGATAGAATTACTATCTTTGATCTGC
66 AGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGC
* * ** * *
9393650 TCCACTGTAATCTCAGGGAGATAAGATCTGCAAT-TCTTCAGTCTACTCCACTGTAATCTCAGGG
131 TCCGCTGTAATCTCAGGGAGATAAGATCT-C--TGGCTTCAACCTGCTCCACTGTAACCTCAGGG
9393714 AGATA
193 AGATA
9393719 TGACCTGTAT
Statistics
Matches: 377, Mismatches: 31, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
213 31 0.08
214 248 0.66
215 1 0.00
216 29 0.08
217 1 0.00
218 67 0.18
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (214 bp):
GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGC
TCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAACCTGCTCCACTGTAACCTCAGGGAGA
TAAGATCTGAAATTCTCCG
Found at i:9394906 original size:6 final size:6
Alignment explanation
Indices: 9394891--9394933 Score: 58
Period size: 5 Copynumber: 7.8 Consensus size: 6
9394881 TGGCCTCTCC
9394891 TTTT-T TTTTGT TTTTGT TTTTG- TTTTGT TTTT-T TTTT-T TTTTG
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTG
9394934 GACCTTCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
5 19 0.54
6 16 0.46
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (6 bp):
TTTTGT
Found at i:9405266 original size:4 final size:4
Alignment explanation
Indices: 9405259--9405283 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
9405249 TGTATGCATG
9405259 CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA C
9405284 TCGTGTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Done.