Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 26 of 135
Found at i:10111807 original size:14 final size:14
Alignment explanation
Indices: 10111762--10111816 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
10111752 GGATGCGCCG
10111762 GGCCTAACATATCT
1 GGCCTAACATATCT
** *
10111776 GGCGGATA-AT-TGT
1 GGCCTA-ACATATCT
10111789 GGCCTAACATATCT
1 GGCCTAACATATCT
*
10111803 GGCCTAGCATATCT
1 GGCCTAACATATCT
10111817 TTGTGGGTGC
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
12 1 0.03
13 8 0.26
14 21 0.68
15 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (14 bp):
GGCCTAACATATCT
Found at i:10119716 original size:26 final size:24
Alignment explanation
Indices: 10119671--10119721 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
10119661 AAAATGTGCA
10119671 AAAAAGAAAAAATATAGAAAAAGT
1 AAAAAGAAAAAATATAGAAAAAGT
* *
10119695 AAAAAGTAAAAATGAGTGGAAAAAGT
1 AAAAAGAAAAAAT-A-TAGAAAAAGT
10119721 A
1 A
10119722 TTGAACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 12 0.52
25 1 0.04
26 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.14
Consensus pattern (24 bp):
AAAAAGAAAAAATATAGAAAAAGT
Found at i:10121980 original size:20 final size:20
Alignment explanation
Indices: 10121955--10122018 Score: 101
Period size: 20 Copynumber: 3.1 Consensus size: 20
10121945 ATGCGACTAC
*
10121955 AATAATACCAATTTTATAAT
1 AATAATATCAATTTTATAAT
10121975 AATAATATCAATTTTATAAT
1 AATAATATCAATTTTATAAT
*
10121995 AATAATATCGATTTTAATAAT
1 AATAATATCAATTTT-ATAAT
10122016 AAT
1 AAT
10122019 GGTATTAATC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
20 33 0.80
21 8 0.20
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (20 bp):
AATAATATCAATTTTATAAT
Found at i:10125720 original size:215 final size:215
Alignment explanation
Indices: 10125112--10125757 Score: 1100
Period size: 215 Copynumber: 3.0 Consensus size: 215
10125102 AACCAATCTT
10125112 CTAATAACTTGATAGTCACCGATTGATCCATACTCTTCTCTATTAAAAAATGGATTT-TCTCTAA
1 CTAATAACTTGATAGTCACCGATTGATCCATACTCTTCTCTATTAAAAAATGGATTTCTCTCTAA
* * *
10125176 GAAGGTAATCAATGCGATACCTTCTATTGTCTCAGTATAAACAATGCCCTCCAATAATTCAGTAT
66 GAAGGTAATCAATGGGATACCTTCTATTGTCTCAGTATAAACACTGCCCTCCAATAATTCAATAT
* * *
10125241 -TTCCTCATTTAGTGCCTTCATTGAACGATTTGCTTCCATCGGAAATCCCATCAACATGTCCTAG
131 CTTCCTCAATTAATGCCTTCATTGAACGATTTGCTTCCATCGGAAATCCCATCAACATGTCCCAG
*
10125305 AAAGAGACTCGGGCTCCTCC
196 AAAGAGACTCGGGTTCCTCC
*
10125325 CTAATAACTTGATAGTCACCGATTGATCCATACTCTTCTTTATTAAAAAATGGA-TTCTCTCTAA
1 CTAATAACTTGATAGTCACCGATTGATCCATACTCTTCTCTATTAAAAAATGGATTTCTCTCTAA
* *
10125389 GAAGGTAATCAATGGGACACCTTCTATTGTCTCATTATAAACACTGCCCTCCAATAATTCAATAT
66 GAAGGTAATCAATGGGATACCTTCTATTGTCTCAGTATAAACACTGCCCTCCAATAATTCAATAT
10125454 CTTCCTCAATTAATGCCTTCATTGAACGATTTGCTTCCATCGGAAATCCCATCAACATGTCCCAG
131 CTTCCTCAATTAATGCCTTCATTGAACGATTTGCTTCCATCGGAAATCCCATCAACATGTCCCAG
10125519 AAAGAGACTCGGGTTCCTCC
196 AAAGAGACTCGGGTTCCTCC
* *
10125539 GTAGTAACTTGATAGTCACCGATTGATCCATACTCTTCTCTATTAAAAAATGGATTTCTCTCTAA
1 CTAATAACTTGATAGTCACCGATTGATCCATACTCTTCTCTATTAAAAAATGGATTTCTCTCTAA
* *
10125604 GAAAGTAATCAATGGGATACCTTCTATTATCTCAGTATAAACACTGCCCTCCAATAATTCAATAT
66 GAAGGTAATCAATGGGATACCTTCTATTGTCTCAGTATAAACACTGCCCTCCAATAATTCAATAT
* * *
10125669 CTTCCTCAGTTAATGCCTTCGTTGAACGATTTGCTTCCATCGAAAATCCCATCAACATGTCCCAG
131 CTTCCTCAATTAATGCCTTCATTGAACGATTTGCTTCCATCGGAAATCCCATCAACATGTCCCAG
10125734 AAAGAGACTCGGGCCTTCCTCC
196 AAAGAGACTCGGG--TTCCTCC
10125756 CT
1 CT
10125758 TCAGCGCACC
Statistics
Matches: 407, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
212 2 0.00
213 120 0.29
214 131 0.32
215 146 0.36
217 8 0.02
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (215 bp):
CTAATAACTTGATAGTCACCGATTGATCCATACTCTTCTCTATTAAAAAATGGATTTCTCTCTAA
GAAGGTAATCAATGGGATACCTTCTATTGTCTCAGTATAAACACTGCCCTCCAATAATTCAATAT
CTTCCTCAATTAATGCCTTCATTGAACGATTTGCTTCCATCGGAAATCCCATCAACATGTCCCAG
AAAGAGACTCGGGTTCCTCC
Found at i:10130412 original size:4 final size:4
Alignment explanation
Indices: 10130397--10130513 Score: 64
Period size: 4 Copynumber: 29.2 Consensus size: 4
10130387 ATTTGTAATA
* * *
10130397 AAAT ACAT AAAT AAAT AAAT -AAT -AAT AGAT ATAAT -AAT AAAT ATAGT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT A-AAT
* * * * * **
10130444 AAAAG AAAA AACAA AAAT AAAA AACAA AAAT AAAT GTAT AAAT --AT AAAT
1 -AAAT AAAT AA-AT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT
10130493 AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT A
10130514 CAAAGAAACA
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
2 2 0.02
3 9 0.10
4 64 0.72
5 13 0.15
6 1 0.01
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:10130435 original size:22 final size:21
Alignment explanation
Indices: 10130393--10130507 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 21
10130383 TGCAATTTGT
10130393 AATAAAATACATAAATAAATA
1 AATAAAATACATAAATAAATA
*
10130414 AATAATAATAGATATAAT-AATA
1 AATAA-AATACATA-AATAAATA
* * * * * *
10130436 AATATAGTAAAAGAAAAAACAAA
1 AATAAAAT-ACATAAATAA-ATA
* * *
10130459 AATAAAAAACAAAAATAAATG
1 AATAAAATACATAAATAAATA
* *
10130480 TATAAATATAAATAAATAAATA
1 AATAAA-ATACATAAATAAATA
10130502 AATAAA
1 AATAAA
10130508 TAAATACAAA
Statistics
Matches: 67, Mismatches: 21, Indels: 11
0.68 0.21 0.11
Matches are distributed among these distances:
21 15 0.22
22 42 0.63
23 10 0.15
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
AATAAAATACATAAATAAATA
Found at i:10130465 original size:13 final size:13
Alignment explanation
Indices: 10130444--10130477 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
10130434 TAAATATAGT
*
10130444 AAAAGAAAAAACA
1 AAAATAAAAAACA
10130457 AAAATAAAAAACA
1 AAAATAAAAAACA
10130470 AAAATAAA
1 AAAATAAA
10130478 TGTATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.85, C:0.06, G:0.03, T:0.06
Consensus pattern (13 bp):
AAAATAAAAAACA
Found at i:10132172 original size:44 final size:44
Alignment explanation
Indices: 10132124--10132412 Score: 188
Period size: 44 Copynumber: 6.4 Consensus size: 44
10132114 TACTCTACTA
* *
10132124 CAACTTCAGAGAGATGAGATTTGTAATTTCAACCAGCTCCACTG
1 CAACTTCAGAGAGATAAGATTTGTAATTTCAACCTGCTCCACTG
* ** ** * * *
10132168 CAACTTCAGGGAGATAAGGCTTGTAGCTTCAACTTGCACTACTG
1 CAACTTCAGAGAGATAAGATTTGTAATTTCAACCTGCTCCACTG
* * * * * *
10132212 CAACTTCAGAGAGATAAGGTTTG--ATAT-GATCTGCTCTACTA
1 CAACTTCAGAGAGATAAGATTTGTAATTTCAACCTGCTCCACTG
* * * *
10132253 CAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTG
1 CAACTTCAGAGAGATAAGATTTGTAA-TT-T--C---AACCTGCTCCACTG
* * *
10132304 CAGCTTCAGGGAAATAAGATTTGGTAATTTCAACCTGCTCCACTG
1 CAACTTCAGAGAGATAAGATTT-GTAATTTCAACCTGCTCCACTG
* * * * * *
10132349 CAACTTCAGGGAGATAAGGTTTGCGTATTTTTATCCTACTCCACTG
1 CAACTTCAGAGAGATAAGATTT--GTAATTTCAACCTGCTCCACTG
* *
10132395 CAGCTTCAGGGAGATAAG
1 CAACTTCAGAGAGATAAG
10132413 GATTGTGGCT
Statistics
Matches: 189, Mismatches: 44, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
41 29 0.15
42 1 0.01
43 1 0.01
44 56 0.30
45 32 0.17
46 35 0.19
48 1 0.01
50 1 0.01
51 29 0.15
52 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (44 bp):
CAACTTCAGAGAGATAAGATTTGTAATTTCAACCTGCTCCACTG
Found at i:10132402 original size:46 final size:45
Alignment explanation
Indices: 10132297--10132413 Score: 162
Period size: 46 Copynumber: 2.6 Consensus size: 45
10132287 TTTAATCTGT
* * *
10132297 TCCACTGCAGCTTCAGGGAAATAAGATTTGGTAATTTCAACCTGC
1 TCCACTGCAGCTTCAGGGAGATAAGGTTTGGTAATTTCAACCTAC
* * * *
10132342 TCCACTGCAACTTCAGGGAGATAAGGTTTGCGTATTTTTATCCTAC
1 TCCACTGCAGCTTCAGGGAGATAAGGTTTG-GTAATTTCAACCTAC
10132388 TCCACTGCAGCTTCAGGGAGATAAGG
1 TCCACTGCAGCTTCAGGGAGATAAGG
10132414 ATTGTGGCTT
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 27 0.43
46 36 0.57
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (45 bp):
TCCACTGCAGCTTCAGGGAGATAAGGTTTGGTAATTTCAACCTAC
Found at i:10143877 original size:15 final size:16
Alignment explanation
Indices: 10143845--10143880 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
10143835 TCAAAGAAAA
*
10143845 AATAAATTAAATTAAT
1 AATAAAATAAATTAAT
10143861 AATAAAATAAA-TAAT
1 AATAAAATAAATTAAT
10143876 AATAA
1 AATAA
10143881 TGATAACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATAAAATAAATTAAT
Found at i:10143881 original size:21 final size:21
Alignment explanation
Indices: 10143843--10143892 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
10143833 AATCAAAGAA
*
10143843 AAAATAAATTAAATTAATAAT
1 AAAATAAATTAAAATAATAAT
*
10143864 AAAATAAA-TAATAATAATGAT
1 AAAATAAATTAA-AATAATAAT
10143885 AACAATAA
1 AA-AATAA
10143893 TAGTTCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.12
21 17 0.68
22 5 0.20
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
AAAATAAATTAAAATAATAAT
Found at i:10144153 original size:6 final size:6
Alignment explanation
Indices: 10144144--10144178 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
10144134 AAAAACAAAA
* *
10144144 AAATAT AAATAT AAATAT AAATGT ATATAT AAATA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATA
10144179 AATACAAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (6 bp):
AAATAT
Found at i:10147648 original size:72 final size:72
Alignment explanation
Indices: 10147558--10147692 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
10147548 AAATAAGATA
* * * * * *
10147558 ATTAAGTTTATTTGCTCAT-GATTTCTAATATGGTAAAGTTGTCATGACTTTGACAAAATTAAAT
1 ATTAAATTTATTTACTCATAGATTT-TAATATGATAAAATCGTCATGACTTTAACAAAATTAAAT
10147622 TTGAGTAG
65 TTGAGTAG
*
10147630 ATTAAATTTATTTACTCATAGATTTTAATATGATAAAATCGTCATGACTTTAACGAAATTAAA
1 ATTAAATTTATTTACTCATAGATTTTAATATGATAAAATCGTCATGACTTTAACAAAATTAAA
10147693 ATTGGATTGA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 50 0.91
73 5 0.09
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.41
Consensus pattern (72 bp):
ATTAAATTTATTTACTCATAGATTTTAATATGATAAAATCGTCATGACTTTAACAAAATTAAATT
TGAGTAG
Found at i:10156061 original size:60 final size:62
Alignment explanation
Indices: 10155893--10156124 Score: 305
Period size: 63 Copynumber: 3.8 Consensus size: 62
10155883 TAACATGATA
**
10155893 ACATT-GGCTAACATATT-TATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATGT
1 ACATTCGGCTAACATATTATATAATTCATACAATTAAATTCAACTTATCAAACTCAAAATGT
* **
10155953 ACATTCGGCTAACATATTTATATAATTCAT-CAAATTAAATTCAGCTTAT-AGAACTCAAAACAT
1 ACATTCGGCTAACATA-TTATATAATTCATAC-AATTAAATTCAACTTATCA-AACTCAAAATGT
**
10156016 ACATT-GGCTAACATA-TATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATGT
1 ACATTCGGCTAACATATTATATAATTCATACAATTAAATTCAACTTATCAAACTCAAAATGT
* *
10156076 ACATTCGGCTAACATATTTATATAATTCATAAAATTAAATTCATCTTAT
1 ACATTCGGCTAACATA-TTATATAATTCATACAATTAAATTCAACTTAT
10156125 AGAACACACA
Statistics
Matches: 148, Mismatches: 14, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
60 46 0.31
61 22 0.15
62 14 0.09
63 66 0.45
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.36
Consensus pattern (62 bp):
ACATTCGGCTAACATATTATATAATTCATACAATTAAATTCAACTTATCAAACTCAAAATGT
Found at i:10156112 original size:123 final size:123
Alignment explanation
Indices: 10155893--10156129 Score: 447
Period size: 123 Copynumber: 1.9 Consensus size: 123
10155883 TAACATGATA
*
10155893 ACATTGGCTAACATATTTATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATGTACATT
1 ACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATGTACATT
*
10155958 CGGCTAACATATTTATATAATTCATCAAATTAAATTCAGCTTATAGAACTCAAAACAT
66 CGGCTAACATATTTATATAATTCATAAAATTAAATTCAGCTTATAGAACTCAAAACAT
10156016 ACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATGTACATT
1 ACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATGTACATT
*
10156081 CGGCTAACATATTTATATAATTCATAAAATTAAATTCATCTTATAGAAC
66 CGGCTAACATATTTATATAATTCATAAAATTAAATTCAGCTTATAGAAC
10156130 ACACACACAC
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 111 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (123 bp):
ACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATGTACATT
CGGCTAACATATTTATATAATTCATAAAATTAAATTCAGCTTATAGAACTCAAAACAT
Found at i:10164050 original size:61 final size:61
Alignment explanation
Indices: 10163984--10164154 Score: 197
Period size: 60 Copynumber: 2.8 Consensus size: 61
10163974 TCAGCTTATA
* * * *
10163984 AAACTCAAAACATACATTCGGCTAACAGATATATATTTTATAAAATTTCTTTCAAC-TCAT-
1 AAACTCAAAACATACATTCGGCTAACATATTTATATTTCATAAAATTACTTTCAACAT-ATC
* * *
10164044 AGAACTCAAAACATACACTT--GCTAACATATTTATAATTCATACAATTAGTTTCAACATATC
1 A-AACTCAAAACATACA-TTCGGCTAACATATTTATATTTCATAAAATTACTTTCAACATATC
*
10164105 AAACTTAAAACATACATTCGGCTAACATATTTATATAATTCATAAAATTA
1 AAACTCAAAACATACATTCGGCTAACATATTTATAT--TTCATAAAATTA
10164155 AATTCAGCTT
Statistics
Matches: 93, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
59 2 0.02
60 46 0.49
61 32 0.34
62 2 0.02
63 11 0.12
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.34
Consensus pattern (61 bp):
AAACTCAAAACATACATTCGGCTAACATATTTATATTTCATAAAATTACTTTCAACATATC
Found at i:10164115 original size:60 final size:58
Alignment explanation
Indices: 10163949--10164160 Score: 201
Period size: 61 Copynumber: 3.5 Consensus size: 58
10163939 AGATATATAT
* * *
10163949 ATATATATAATTCATACAATTAAATTCAGCTTATAAAACTCAAAACATACATTCGGCTAAC
1 ATATATATAATTCATAAAATTAATTTCAAC-TAT-AAACTCAAAACATACATTC-GCTAAC
* * * **
10164010 AGATATATATTTTATAAAATTTCTTTCAACTCATAGAACTCAAAACATACACTT-GCTAAC
1 ATATATATAATTCATAAAATTAATTTCAACT-ATA-AACTCAAAACATACA-TTCGCTAAC
* * * *
10164070 ATATTTATAATTCATACAATTAGTTTCAACATATCAAACTTAAAACATACATTCGGCTAAC
1 ATATATATAATTCATAAAATTAATTTCAAC-TAT-AAACTCAAAACATACATTC-GCTAAC
*
10164131 ATATTTATATAATTCATAAAATTAAATTCA
1 ATA--TATATAATTCATAAAATTAATTTCA
10164161 GCTTATAGAA
Statistics
Matches: 122, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
59 2 0.02
60 47 0.39
61 50 0.41
62 2 0.02
63 21 0.17
ACGTcount: A:0.44, C:0.17, G:0.04, T:0.35
Consensus pattern (58 bp):
ATATATATAATTCATAAAATTAATTTCAACTATAAACTCAAAACATACATTCGCTAAC
Found at i:10166064 original size:28 final size:29
Alignment explanation
Indices: 10166026--10166098 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
10166016 ACAAAACTTC
*
10166026 TCTCGTCAAAATTATTTCTTCAGAACCCA
1 TCTCGTCAAAATTATTTCTTAAGAACCCA
*
10166055 TCTC-TCAAAATTATTTTTTAAGAACCCA
1 TCTCGTCAAAATTATTTCTTAAGAACCCA
*
10166083 TCTTGT-ACAAATTATT
1 TCTCGTCA-AAATTATT
10166099 ATTTTCAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
28 26 0.67
29 13 0.33
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (29 bp):
TCTCGTCAAAATTATTTCTTAAGAACCCA
Found at i:10166172 original size:32 final size:32
Alignment explanation
Indices: 10166131--10166192 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
10166121 TAATTAATAA
10166131 ACTTAAAAATAAATAAAACCCTAAA-CCTAAAT
1 ACTTAAAAATAAA-AAAACCCTAAATCCTAAAT
* * *
10166163 ACTTTAAAATTAAAAAACCTTAAATCCTAA
1 ACTTAAAAATAAAAAAACCCTAAATCCTAA
10166193 CCCTTATTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (32 bp):
ACTTAAAAATAAAAAAACCCTAAATCCTAAAT
Found at i:10169773 original size:6 final size:6
Alignment explanation
Indices: 10169763--10169798 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
10169753 AGAATTTAGC
*
10169763 TTTTAC TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
10169799 CTTCTCAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:10173167 original size:164 final size:164
Alignment explanation
Indices: 10172891--10173218 Score: 559
Period size: 164 Copynumber: 2.0 Consensus size: 164
10172881 GGAGGCCACC
* *
10172891 CCTATCCTCTCTACTGCTAGGATTTCAACCCTAGTTTCGCGCCGCCGAAAGCTCCGCCAATATCC
1 CCTACCCTCTCTACTACTAGGATTTCAACCCTAGTTTCGCGCCGCCGAAAGCTCCGCCAATATCC
*
10172956 GGCCTCACAGCTTTAGCCCGAGCTTCGATTGCGACAAAGCGAGCAAGGTTTCAATCGGCGCTACG
66 AGCCTCACAGCTTTAGCCCGAGCTTCGATTGCGACAAAGCGAGCAAGGTTTCAATCGGCGCTACG
10173021 CTAAGGTGAATCCTTTCCCTTTTTAC-CTCTATTT
131 CTAAGGTGAATCCTTTCCCTTTTT-CTCTCTATTT
* * *
10173055 CCTACCCTCTCTACTACTAGGATTTCAACCTTAGTTTCGCGCCGCCGAAAGCTTCTCCAATATCC
1 CCTACCCTCTCTACTACTAGGATTTCAACCCTAGTTTCGCGCCGCCGAAAGCTCCGCCAATATCC
* * *
10173120 AGCCTCACAGCTTTAGCCTGAGCTTCGATTGCGACGAAGTGAGCAAGGTTTCAATCGGCGCTACG
66 AGCCTCACAGCTTTAGCCCGAGCTTCGATTGCGACAAAGCGAGCAAGGTTTCAATCGGCGCTACG
10173185 CTAAGGTGAATCCTTTCCCTTTTTCTCTCTATTT
131 CTAAGGTGAATCCTTTCCCTTTTTCTCTCTATTT
10173219 ACAAAAATCA
Statistics
Matches: 154, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
163 1 0.01
164 153 0.99
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.30
Consensus pattern (164 bp):
CCTACCCTCTCTACTACTAGGATTTCAACCCTAGTTTCGCGCCGCCGAAAGCTCCGCCAATATCC
AGCCTCACAGCTTTAGCCCGAGCTTCGATTGCGACAAAGCGAGCAAGGTTTCAATCGGCGCTACG
CTAAGGTGAATCCTTTCCCTTTTTCTCTCTATTT
Found at i:10173435 original size:16 final size:16
Alignment explanation
Indices: 10173408--10173444 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
10173398 CCAGAATTAC
10173408 AGGAAA-AAAATAAAA
1 AGGAAATAAAATAAAA
10173423 AGGAAATAAAATAAAA
1 AGGAAATAAAATAAAA
10173439 A-GAAAT
1 AGGAAAT
10173445 CCTCCCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.11
Consensus pattern (16 bp):
AGGAAATAAAATAAAA
Found at i:10174853 original size:29 final size:27
Alignment explanation
Indices: 10174765--10174853 Score: 70
Period size: 29 Copynumber: 3.0 Consensus size: 27
10174755 CGAAAAAAAT
*
10174765 ATATAAATAAAAATTATAAAAACTATTAAA
1 ATATAAA-AAAAATTAT-AAATC-ATTAAA
* * * *
10174795 TTTTAAGAAAATATATATAAATCATAAAA
1 ATATAA-AAAAAAT-TATAAATCATTAAA
10174824 ATATAAAAAAAATTATCAAATGCATTAAA
1 ATATAAAAAAAATTAT-AAAT-CATTAAA
10174853 A
1 A
10174854 AGACCCTTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
27 3 0.07
28 10 0.22
29 16 0.35
30 13 0.28
31 4 0.09
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (27 bp):
ATATAAAAAAAATTATAAATCATTAAA
Found at i:10175341 original size:16 final size:17
Alignment explanation
Indices: 10175310--10175342 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
10175300 ACACACACAG
10175310 AAACAACAGCAAATAGAA
1 AAACAACAGC-AATAGAA
10175328 AAACAACAGC-ATAGA
1 AAACAACAGCAATAGA
10175343 GGTGATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.64, C:0.18, G:0.12, T:0.06
Consensus pattern (17 bp):
AAACAACAGCAATAGAA
Found at i:10181560 original size:45 final size:45
Alignment explanation
Indices: 10181495--10181588 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 45
10181485 AAAGATACGG
**
10181495 GCAAACAAACAATCTGGTTTCATAATTAACCTCCAACCTTGTTTT
1 GCAAACAAACAATCCAGTTTCATAATTAACCTCCAACCTTGTTTT
10181540 GCAAACAAACAATCCAGTTTCATAATTAACCTCCAACCTTGTTTT
1 GCAAACAAACAATCCAGTTTCATAATTAACCTCCAACCTTGTTTT
10181585 GCAA
1 GCAA
10181589 GCAACACTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.31
Consensus pattern (45 bp):
GCAAACAAACAATCCAGTTTCATAATTAACCTCCAACCTTGTTTT
Found at i:10181726 original size:32 final size:32
Alignment explanation
Indices: 10181685--10181748 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
10181675 TGAATTCCCT
*
10181685 TTCCTATTTTAGAATTTCTCTACTAAAATTTA
1 TTCCTATTTTAGAATTTCTCCACTAAAATTTA
*
10181717 TTCCTATTTTAGAATTTCTCCACTAACATTTA
1 TTCCTATTTTAGAATTTCTCCACTAAAATTTA
10181749 CTAATAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (32 bp):
TTCCTATTTTAGAATTTCTCCACTAAAATTTA
Found at i:10197383 original size:39 final size:39
Alignment explanation
Indices: 10197329--10197406 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
10197319 TATTATACAC
*
10197329 ATTAACTAATTGAACTAATTAGTCTACAATTACGAATAA
1 ATTAACTAATTGAACTAATTAGTCTACAATTAAGAATAA
10197368 ATTAACTAATTGAACTAATTAGTCTACAATTAAGAATAA
1 ATTAACTAATTGAACTAATTAGTCTACAATTAAGAATAA
10197407 GAAATTATCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (39 bp):
ATTAACTAATTGAACTAATTAGTCTACAATTAAGAATAA
Found at i:10199571 original size:16 final size:16
Alignment explanation
Indices: 10199542--10199575 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10199532 AAAAATACTA
* *
10199542 TATAACTAATTAAATT
1 TATAAATAAATAAATT
10199558 TATAAATAAATAAATT
1 TATAAATAAATAAATT
10199574 TA
1 TA
10199576 AAAACTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TATAAATAAATAAATT
Found at i:10199837 original size:14 final size:13
Alignment explanation
Indices: 10199811--10199844 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10199801 TCATTTTGAT
10199811 TTTCTAAACAAAA
1 TTTCTAAACAAAA
*
10199824 TTTCTGAACAAAA
1 TTTCTAAACAAAA
*
10199837 ATTCTAAA
1 TTTCTAAA
10199845 AAATTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (13 bp):
TTTCTAAACAAAA
Found at i:10201415 original size:20 final size:19
Alignment explanation
Indices: 10201392--10201430 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
10201382 AAATAACTCA
*
10201392 TATTATTTACAATTAAAAAT
1 TATTAATTACAA-TAAAAAT
*
10201412 TATTAATTAGAATAAAAAT
1 TATTAATTACAATAAAAAT
10201431 AATTTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (19 bp):
TATTAATTACAATAAAAAT
Found at i:10202123 original size:16 final size:16
Alignment explanation
Indices: 10202102--10202148 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
10202092 GGTAAGACGA
10202102 AAATTTAAATTTTTTT
1 AAATTTAAATTTTTTT
* ** *
10202118 AAATTTCAATAATGTT
1 AAATTTAAATTTTTTT
10202134 AAATTTAAATTTTTT
1 AAATTTAAATTTTTT
10202149 AATTTGAAAA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
AAATTTAAATTTTTTT
Found at i:10204113 original size:27 final size:27
Alignment explanation
Indices: 10204014--10204116 Score: 73
Period size: 27 Copynumber: 3.6 Consensus size: 27
10204004 TATATTTACA
**
10204014 AAATATATAAAAAAA-ATGTAAATATAT
1 AAATATA-AAAAAAATATGTATGTATAT
* *
10204041 AATATATAAATAAACTATGAAGATATGTATAT
1 AA-ATATAAA-AAA-AAT-ATG-TATGTATAT
* *
10204073 ATATGTAAAAAAAATATGTATGTATAT
1 AAATATAAAAAAAATATGTATGTATAT
10204100 AAATATATATAAAAAAT
1 AAATATA-A-AAAAAAT
10204117 GAAATATATA
Statistics
Matches: 58, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
27 18 0.31
28 11 0.19
29 10 0.17
30 3 0.05
31 8 0.14
32 8 0.14
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.33
Consensus pattern (27 bp):
AAATATAAAAAAAATATGTATGTATAT
Found at i:10204460 original size:3 final size:3
Alignment explanation
Indices: 10204452--10204528 Score: 154
Period size: 3 Copynumber: 25.7 Consensus size: 3
10204442 TTTATGGTTG
10204452 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10204500 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10204529 NNNNNNNNNN
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10204845 original size:49 final size:48
Alignment explanation
Indices: 10204792--10204890 Score: 114
Period size: 49 Copynumber: 2.0 Consensus size: 48
10204782 TGAAAAGGAT
10204792 TAAAA-ACA-TAAATAACCCATAAAT-AAAACCCCATTTCATTTGCAGCCAA
1 TAAAACACATTAAA-AACCC-T-AATCAAAACCCCATTTCATTTGCAG-CAA
* **
10204841 TAAAACCCATTTCAAACCCTAATCAAAACCCCATTTCATTTGCAGCAA
1 TAAAACACATTAAAAACCCTAATCAAAACCCCATTTCATTTGCAGCAA
10204889 TA
1 TA
10204891 GCAGCACAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
48 8 0.18
49 27 0.61
50 7 0.16
51 2 0.05
ACGTcount: A:0.44, C:0.27, G:0.04, T:0.24
Consensus pattern (48 bp):
TAAAACACATTAAAAACCCTAATCAAAACCCCATTTCATTTGCAGCAA
Found at i:10205317 original size:21 final size:21
Alignment explanation
Indices: 10205269--10205318 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
10205259 ATGCGCTGAA
*
10205269 GCACGGGGCAACGTGCACGAC
1 GCACGGGGCAACGTGCACAAC
** * *
10205290 GTGCGGGGCGACGTGCGCAAC
1 GCACGGGGCAACGTGCACAAC
10205311 GCACGGGG
1 GCACGGGG
10205319 GGCTGTTGTG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.30, G:0.46, T:0.06
Consensus pattern (21 bp):
GCACGGGGCAACGTGCACAAC
Found at i:10208998 original size:29 final size:30
Alignment explanation
Indices: 10208944--10209009 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
10208934 CTTTCAAAAT
*
10208944 ACCCTAATCCCTAAAAAACCATAAACCCTA
1 ACCCTAATCCCTAAAAAACCAAAAACCCTA
* *
10208974 ACCCTAA-CCCTAATAAAA-TAAAAACTCTA
1 ACCCTAATCCCTAA-AAAACCAAAAACCCTA
10209003 ACCCTAA
1 ACCCTAA
10209010 AAAAAAAGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 21 0.66
30 11 0.34
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.18
Consensus pattern (30 bp):
ACCCTAATCCCTAAAAAACCAAAAACCCTA
Found at i:10210049 original size:2 final size:2
Alignment explanation
Indices: 10210044--10210077 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10210034 CCTCTCACCG
10210044 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
10210078 CAGTCTCCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:10216452 original size:62 final size:59
Alignment explanation
Indices: 10216381--10216515 Score: 164
Period size: 62 Copynumber: 2.2 Consensus size: 59
10216371 GTAGGTTATA
* *
10216381 TATTATTTTTATATTATTAATTTATATTTTAATAATAATTATATTAAGA-ATGCTATTAAAT
1 TATTATTTTTATATTATTAAATTATA-TTTAATAATAATTATATTAAAATATG--ATTAAAT
* **
10216442 TATTTATTTTTATTTTTATTAAATTATATTTGGTAATAATTATATTAAAATATGATTAAAT
1 TA-TTATTTTTA-TATTATTAAATTATATTTAATAATAATTATATTAAAATATGATTAAAT
10216503 TATTATTTATTAT
1 TATTATTT-TTAT
10216516 TAAATTTAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
60 7 0.11
61 14 0.22
62 28 0.43
63 16 0.25
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (59 bp):
TATTATTTTTATATTATTAAATTATATTTAATAATAATTATATTAAAATATGATTAAAT
Found at i:10227808 original size:22 final size:24
Alignment explanation
Indices: 10227777--10227827 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
10227767 AATAAATAAC
*
10227777 CCCAAACCCAA-ATCAAA-AC-AG
1 CCCAAACCCAATAACAAACACTAG
10227798 CCCAATACCCAATAACAAACACTAG
1 CCCAA-ACCCAATAACAAACACTAG
10227823 CCCAA
1 CCCAA
10227828 CAACAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 5 0.20
22 6 0.24
23 5 0.20
24 2 0.08
25 7 0.28
ACGTcount: A:0.49, C:0.39, G:0.04, T:0.08
Consensus pattern (24 bp):
CCCAAACCCAATAACAAACACTAG
Found at i:10229074 original size:18 final size:19
Alignment explanation
Indices: 10229040--10229076 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10229030 ATATTTAAAG
10229040 CTTTGAAATGTTCGCTGTT
1 CTTTGAAATGTTCGCTGTT
10229059 CTTTGAAATG-TCGCTGTT
1 CTTTGAAATGTTCGCTGTT
10229077 ATTATTATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.46
Consensus pattern (19 bp):
CTTTGAAATGTTCGCTGTT
Found at i:10229083 original size:3 final size:3
Alignment explanation
Indices: 10229075--10229153 Score: 54
Period size: 3 Copynumber: 26.3 Consensus size: 3
10229065 AATGTCGCTG
* * * * *
10229075 TTA TTA TTA TCA TTC TTA TCT- TCA TTA TTA CTA TT- TCTA TTA TCA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
10229120 ATA TTA TTA TTA TTA TTA TTA CTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10229154 ATTTTTATAA
Statistics
Matches: 56, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
2 1 0.02
3 53 0.95
4 2 0.04
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:10229807 original size:20 final size:20
Alignment explanation
Indices: 10229782--10229822 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10229772 AGAAATAAGA
10229782 TGACCAAAATTTTTTAGTTT
1 TGACCAAAATTTTTTAGTTT
10229802 TGACCAAAATTTTTTAGTTT
1 TGACCAAAATTTTTTAGTTT
10229822 T
1 T
10229823 CAAATTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (20 bp):
TGACCAAAATTTTTTAGTTT
Found at i:10241638 original size:132 final size:132
Alignment explanation
Indices: 10241399--10242006 Score: 790
Period size: 132 Copynumber: 4.6 Consensus size: 132
10241389 AGATAACAAG
* * * * * *
10241399 TCCTATTTCCCTGAGCAACAGTGGAGTAGGTTGAATATTATAGATCCT-GTCTCTCTAAGCAGTA
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGAT-CTGGTCTCCCTAAGCAGTA
* * *
10241463 GCGGAGCAGATCGAAGAA-GTTGAGTCTTATCTTCCCAAAGTAGTAGGGAAGCAGATTTAAGCCA
65 GCGGAGCAGATCGAA-AATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
10241527 CCAA
129 CCAA
* *
10241531 TCCTATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAATGTGGATCTGGTCTCCCTAAGCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAG
* *
10241596 CGGAGCAGATCGAAAACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACT
66 CGGAGCAGATCGAAAATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACC
10241661 AA
131 AA
10241663 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAG
* * * * * *
10241728 CAGAGCAAATCGAACATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCTACT
66 CGGAGCAGATCGAAAATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACC
10241793 AA
131 AA
* * * * *
10241795 T-CTCATCTGCCTGAGCACCAGTGGATTAGGTTGAAGAATGTAGATCTTGTCTCCTTAAGCAGTA
1 TCCT-ATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTA
* * ** * *
10241859 GTGGAGTAGATAAAAAAATGGTGAATTTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
65 GCGGAGCAGAT-CGAAAATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
10241924 CCAA
129 CCAA
* * * * ** * *
10241928 TCCTATCTCCCTGAGCAGTAGTAGAGTAGGTTGAAGATTGCAGATCACGTCTCCTTGAGCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAG
** *
10241993 TAGAGCGGATCGAA
66 CGGAGCAGATCGAA
10242007 GACAGCAAAT
Statistics
Matches: 419, Mismatches: 52, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
131 6 0.01
132 303 0.72
133 108 0.26
134 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAG
CGGAGCAGATCGAAAATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACC
AA
Found at i:10242078 original size:51 final size:51
Alignment explanation
Indices: 10242004--10242112 Score: 137
Period size: 51 Copynumber: 2.1 Consensus size: 51
10241994 AGAGCGGATC
* * ** **
10242004 GAAGACAGCAAATTTTATTTCCCTGGCGTTGCAGTGGAACGGATTAAAGCT
1 GAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAACGGAACAAATTAAAGCT
* * *
10242055 GAAGGCAGTAAATCTTATTTCCCTGGCGTTGTAACGGAACAAATTAAAGTT
1 GAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAACGGAACAAATTAAAGCT
10242106 GAAGGCA
1 GAAGGCA
10242113 ACGAATCTCA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.27
Consensus pattern (51 bp):
GAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAACGGAACAAATTAAAGCT
Found at i:10242120 original size:51 final size:51
Alignment explanation
Indices: 10242012--10242129 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 51
10242002 TCGAAGACAG
* ** ** *
10242012 CAAATTTTATTTCCCTGGCGTTGCAGTGGAACGGATTAAAGCTGAAGGCAG
1 CAAATCTTATTTCCCTGGCGTTGCAACGGAACAAATTAAAGCTGAAGGCAA
* * *
10242063 TAAATCTTATTTCCCTGGCGTTGTAACGGAACAAATTAAAGTTGAAGGCAA
1 CAAATCTTATTTCCCTGGCGTTGCAACGGAACAAATTAAAGCTGAAGGCAA
* * *
10242114 CGAATCTCATCTCCCT
1 CAAATCTTATTTCCCT
10242130 AACATTTAAA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (51 bp):
CAAATCTTATTTCCCTGGCGTTGCAACGGAACAAATTAAAGCTGAAGGCAA
Found at i:10243743 original size:3 final size:3
Alignment explanation
Indices: 10243735--10243813 Score: 54
Period size: 3 Copynumber: 26.3 Consensus size: 3
10243725 ATGTTCGCTG
* * * * *
10243735 TTA TTA TTA TCA TTC TTA TCT- TCA TTA TTA CTA TT- TCTA TTA TCA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
10243780 ATA TTA TTA TTA TTA TTA TTA CTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10243814 ATTTTTATAA
Statistics
Matches: 56, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
2 1 0.02
3 53 0.95
4 2 0.04
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:10245221 original size:3 final size:3
Alignment explanation
Indices: 10245213--10245291 Score: 54
Period size: 3 Copynumber: 26.3 Consensus size: 3
10245203 ATGTTCGCTG
* * * * *
10245213 TTA TTA TTA TCA TTC TTA TCT- TCA TTA TTA CTA TT- TCTA TTA TCA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
10245258 ATA TTA TTA TTA TTA TTA TTA CTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10245292 ATTTTTATAA
Statistics
Matches: 56, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
2 1 0.02
3 53 0.95
4 2 0.04
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:10247718 original size:8 final size:8
Alignment explanation
Indices: 10246920--10247714 Score: 1450
Period size: 8 Copynumber: 99.6 Consensus size: 8
10246910 CCCTATTTCA
*
10246920 TATGTATG
1 TATGTGTG
*
10246928 TATGTATG
1 TATGTGTG
*
10246936 TATGTATG
1 TATGTGTG
*
10246944 TATGTATG
1 TATGTGTG
*
10246952 TATGTATG
1 TATGTGTG
*
10246960 TATGTATG
1 TATGTGTG
*
10246968 TGTGTGTG
1 TATGTGTG
10246976 TATGTGTG
1 TATGTGTG
10246984 TATGTGTG
1 TATGTGTG
10246992 TATGTGTG
1 TATGTGTG
10247000 TATGTGTG
1 TATGTGTG
10247008 TATGTGTG
1 TATGTGTG
10247016 TATGTGTG
1 TATGTGTG
10247024 TATGTGTG
1 TATGTGTG
10247032 TATGTGTG
1 TATGTGTG
10247040 TATGTGTG
1 TATGTGTG
10247048 TATGTGTG
1 TATGTGTG
10247056 TATGTGTG
1 TATGTGTG
10247064 TATGTGTG
1 TATGTGTG
10247072 TATGTGTG
1 TATGTGTG
10247080 TATGTGTG
1 TATGTGTG
10247088 TATGTGTG
1 TATGTGTG
10247096 TATGTGTG
1 TATGTGTG
10247104 TATGTGTG
1 TATGTGTG
10247112 TATGTGTG
1 TATGTGTG
10247120 TATGTGTG
1 TATGTGTG
10247128 TATGTGTG
1 TATGTGTG
10247136 TATGTGTG
1 TATGTGTG
10247144 TATGTGTG
1 TATGTGTG
10247152 TATGTGTG
1 TATGTGTG
10247160 TATGTGTG
1 TATGTGTG
10247168 TATGTGTG
1 TATGTGTG
10247176 TATGTGTG
1 TATGTGTG
10247184 TATGTGTG
1 TATGTGTG
10247192 TATGTGTG
1 TATGTGTG
10247200 TATGTGTG
1 TATGTGTG
10247208 TATGTGTG
1 TATGTGTG
10247216 TATGTGTG
1 TATGTGTG
10247224 TATGTGTG
1 TATGTGTG
10247232 TATGTGTG
1 TATGTGTG
10247240 TATGTGTG
1 TATGTGTG
10247248 TATGTGTG
1 TATGTGTG
10247256 TATGTGTG
1 TATGTGTG
10247264 TATGTGTG
1 TATGTGTG
10247272 TATGTGTG
1 TATGTGTG
10247280 TATGTGTG
1 TATGTGTG
10247288 TATGTGTG
1 TATGTGTG
10247296 TATGTGTG
1 TATGTGTG
10247304 TATGTGTG
1 TATGTGTG
10247312 TATGTGTG
1 TATGTGTG
10247320 TATGTGTG
1 TATGTGTG
10247328 TATGTGTG
1 TATGTGTG
10247336 TATGTGTG
1 TATGTGTG
10247344 TATGTGTG
1 TATGTGTG
10247352 TATGTGTG
1 TATGTGTG
10247360 TATGTGTG
1 TATGTGTG
10247368 TATGTGTG
1 TATGTGTG
10247376 TATGTGTG
1 TATGTGTG
10247384 TATGTGTG
1 TATGTGTG
10247392 TATGTGTG
1 TATGTGTG
10247400 TATGTGTG
1 TATGTGTG
10247408 TATGTGTG
1 TATGTGTG
10247416 TATGTGTG
1 TATGTGTG
10247424 TATGTGTG
1 TATGTGTG
10247432 TATGTGTG
1 TATGTGTG
10247440 TATGTGTG
1 TATGTGTG
10247448 TATGTGTG
1 TATGTGTG
10247456 TATGTGTG
1 TATGTGTG
10247464 TATGTGTG
1 TATGTGTG
10247472 TATGTGTG
1 TATGTGTG
10247480 TATGTGTG
1 TATGTGTG
10247488 TATGTGTG
1 TATGTGTG
10247496 TATGTGTG
1 TATGTGTG
10247504 TATGTGTG
1 TATGTGTG
10247512 TATGTGTG
1 TATGTGTG
10247520 TATGTGTG
1 TATGTGTG
10247528 TATGTGTG
1 TATGTGTG
10247536 TATGTGTG
1 TATGTGTG
10247544 TATGTGTG
1 TATGTGTG
10247552 TATGTGTG
1 TATGTGTG
10247560 TATGTGTG
1 TATGTGTG
10247568 TATGTGTG
1 TATGTGTG
10247576 TATGTGTG
1 TATGTGTG
10247584 TATGTGTG
1 TATGTGTG
10247592 TATGTGTG
1 TATGTGTG
10247600 TATGTGTG
1 TATGTGTG
10247608 TATGTGTG
1 TATGTGTG
10247616 TATGTGTG
1 TATGTGTG
10247624 TATGTGTG
1 TATGTGTG
* *
10247632 TGTGTATG
1 TATGTGTG
10247640 TATGTGTG
1 TATGTGTG
*
10247648 TATGTATG
1 TATGTGTG
10247656 TATGTGTG
1 TATGTGTG
*
10247664 TATGTATG
1 TATGTGTG
10247672 --TGTGTG
1 TATGTGTG
*
10247678 TATGTATG
1 TATGTGTG
10247686 TATGTGTG
1 TATGTGTG
*
10247694 TATGTATG
1 TATGTGTG
*
10247702 TATGTATG
1 TATGTGTG
10247710 TATGT
1 TATGT
10247715 ATGTTTTGAA
Statistics
Matches: 771, Mismatches: 14, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
6 5 0.01
8 766 0.99
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (8 bp):
TATGTGTG
Found at i:10251710 original size:18 final size:19
Alignment explanation
Indices: 10251669--10251710 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
10251659 AAATAAAAAT
10251669 TATATAAAAATATTTTGAA
1 TATATAAAAATATTTTGAA
* * *
10251688 AATAT-AAAATGTTTTTAA
1 TATATAAAAATATTTTGAA
10251706 TATAT
1 TATAT
10251711 GTTATTTTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
TATATAAAAATATTTTGAA
Found at i:10253567 original size:5 final size:5
Alignment explanation
Indices: 10253557--10253592 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
10253547 TTATTTGTTT
10253557 TAATA TAATA TAATA TAATA TAATA TAATA T-ATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
10253593 CTTAATTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAATA
Found at i:10254726 original size:10 final size:10
Alignment explanation
Indices: 10254691--10254733 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
10254681 CGAGACTAAA
10254691 TAGAAAACATT
1 TAGAAAA-ATT
*
10254702 TAG-AAAGTT
1 TAGAAAAATT
10254711 TAAGAAAAATT
1 T-AGAAAAATT
10254722 TAGAAAAATT
1 TAGAAAAATT
10254732 TA
1 TA
10254734 TACTGCAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 3 0.11
10 16 0.57
11 9 0.32
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.30
Consensus pattern (10 bp):
TAGAAAAATT
Found at i:10254733 original size:21 final size:21
Alignment explanation
Indices: 10254692--10254733 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10254682 GAGACTAAAT
*
10254692 AGAAAACATTTAGAAAGTTTA
1 AGAAAACATTTAGAAAATTTA
10254713 AGAAAA-ATTTAGAAAAATTTA
1 AGAAAACATTTAG-AAAATTTA
10254734 TACTGCAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.57, C:0.02, G:0.12, T:0.29
Consensus pattern (21 bp):
AGAAAACATTTAGAAAATTTA
Found at i:10256116 original size:39 final size:39
Alignment explanation
Indices: 10256013--10256127 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 39
10256003 AAATCAACCG
* **
10256013 AACACACCAGACAGAAGCTCATAAGAGCTTATCCAATTGA
1 AACACACCA-ACAGAAGCTCATAAGAGCTGATCCACCTGA
* * *
10256053 AATACTCCAAACAGAAGCTCATAAGAGCTGGTCCACCTGA
1 AACACACC-AACAGAAGCTCATAAGAGCTGATCCACCTGA
*
10256093 AACACACCAACAGAAGCTCATAAGAGATGATCCAC
1 AACACACCAACAGAAGCTCATAAGAGCTGATCCAC
10256128 TCGGAACACG
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 25 0.39
40 38 0.59
41 1 0.02
ACGTcount: A:0.42, C:0.27, G:0.16, T:0.16
Consensus pattern (39 bp):
AACACACCAACAGAAGCTCATAAGAGCTGATCCACCTGA
Found at i:10256136 original size:39 final size:39
Alignment explanation
Indices: 10256013--10256141 Score: 143
Period size: 40 Copynumber: 3.3 Consensus size: 39
10256003 AAATCAACCG
* * *
10256013 AACACACCAGACAGAAGCTCATAAGAGCTTATCCAATTGA
1 AACACACCA-ACAGAAGCTCATAAGAGCTGATCCACTCGA
* * *
10256053 AATACTCCAAACAGAAGCTCATAAGAGCTGGTCCAC-CTGA
1 AACACACC-AACAGAAGCTCATAAGAGCTGATCCACTC-GA
* *
10256093 AACACACCAACAGAAGCTCATAAGAGATGATCCACTCGG
1 AACACACCAACAGAAGCTCATAAGAGCTGATCCACTCGA
*
10256132 AACACGCCAA
1 AACACACCAA
10256142 ATAGAAAGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
39 35 0.47
40 38 0.51
41 1 0.01
ACGTcount: A:0.41, C:0.28, G:0.16, T:0.15
Consensus pattern (39 bp):
AACACACCAACAGAAGCTCATAAGAGCTGATCCACTCGA
Found at i:10257597 original size:28 final size:28
Alignment explanation
Indices: 10257566--10257621 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
10257556 TAGGTTGTTG
10257566 TAGGAACTCACTAAGTTTAATTGAACTT
1 TAGGAACTCACTAAGTTTAATTGAACTT
10257594 TAGGAACTCACTAAGTTTAATTGAACTT
1 TAGGAACTCACTAAGTTTAATTGAACTT
10257622 ACTCCATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (28 bp):
TAGGAACTCACTAAGTTTAATTGAACTT
Found at i:10259285 original size:38 final size:38
Alignment explanation
Indices: 10259210--10259286 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
10259200 GACTTAGGTC
**
10259210 ACACGGCCAAGCCAAACGCTTGTGTGCTAGGTTGTGTG
1 ACACGGCCAAGCCAAACGCTTGTGTGCTAGGCCGTGTG
10259248 ACACGGCCAAGCCAAACGCTTGTGTGCTAGGCCGTGTG
1 ACACGGCCAAGCCAAACGCTTGTGTGCTAGGCCGTGTG
10259286 A
1 A
10259287 AAAATGGTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.21
Consensus pattern (38 bp):
ACACGGCCAAGCCAAACGCTTGTGTGCTAGGCCGTGTG
Found at i:10259405 original size:66 final size:66
Alignment explanation
Indices: 10259252--10259410 Score: 178
Period size: 66 Copynumber: 2.4 Consensus size: 66
10259242 TGTGTGACAC
* * *
10259252 GGCCAAGCCAAACGCTTGTGTGCTAGGCCGTGTGAAAAATGGTGAGCATACTGACTTATGACACA
1 GGCCAAGCCAAACGCCTGTGTGCTAGGACGTGTGAAAAATAGTGAGCATACTGACTTATGACACA
10259317 T
66 T
* * * * * * *
10259318 GGCCAAGCCACACG-CTCGTGTGCTAGGATGTGTGAAAAATAGTGGGTATACTGACTTGTGTCGC
1 GGCCAAGCCAAACGCCT-GTGTGCTAGGACGTGTGAAAAATAGTGAGCATACTGACTTATGACAC
10259382 ACT
65 A-T
* *
10259385 -GCCAAGTCAAATGCCTGTGTGCTAGG
1 GGCCAAGCCAAACGCCTGTGTGCTAGG
10259411 CCATTTGAGG
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
65 1 0.01
66 73 0.95
67 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (66 bp):
GGCCAAGCCAAACGCCTGTGTGCTAGGACGTGTGAAAAATAGTGAGCATACTGACTTATGACACA
T
Found at i:10259508 original size:30 final size:30
Alignment explanation
Indices: 10259474--10259539 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
10259464 TGTCACCTGG
* * *
10259474 CCGTGTGTCACATACCGCTGAGACACATGC
1 CCGTGTGTCACACACCGATGACACACATGC
*
10259504 CCGTGTGTCACACACGGATGACACACATGC
1 CCGTGTGTCACACACCGATGACACACATGC
10259534 CCGTGT
1 CCGTGT
10259540 CTCTGCCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.20
Consensus pattern (30 bp):
CCGTGTGTCACACACCGATGACACACATGC
Found at i:10271096 original size:26 final size:25
Alignment explanation
Indices: 10271028--10271102 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 25
10271018 CTCAAAAGAT
*
10271028 AAAAGCTTGATTAAAAACTTGATG-
1 AAAAACTTGATTAAAAACTTGATGA
*
10271052 -AAAACTTGCTTAAAAACTTGATGA
1 AAAAACTTGATTAAAAACTTGATGA
* *
10271076 AAAACACTTGATGAAAGACTTGATGA
1 AAAA-ACTTGATTAAAAACTTGATGA
10271102 A
1 A
10271103 TAAATGAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 21 0.49
25 3 0.07
26 19 0.44
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAAACTTGATTAAAAACTTGATGA
Found at i:10271100 original size:12 final size:12
Alignment explanation
Indices: 10271028--10271102 Score: 80
Period size: 12 Copynumber: 6.2 Consensus size: 12
10271018 CTCAAAAGAT
* *
10271028 AAAAGCTTGATT
1 AAAAACTTGATG
10271040 AAAAACTTGATG
1 AAAAACTTGATG
* *
10271052 -AAAACTTGCTT
1 AAAAACTTGATG
10271063 AAAAACTTGATG
1 AAAAACTTGATG
10271075 AAAAACACTTGATG
1 -AAAA-ACTTGATG
*
10271089 AAAGACTTGATG
1 AAAAACTTGATG
10271101 AA
1 AA
10271103 TAAATGAACA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
11 9 0.17
12 29 0.55
13 7 0.13
14 8 0.15
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.27
Consensus pattern (12 bp):
AAAAACTTGATG
Found at i:10275037 original size:146 final size:147
Alignment explanation
Indices: 10274764--10275056 Score: 563
Period size: 146 Copynumber: 2.0 Consensus size: 147
10274754 TAGAGTATAA
10274764 CAAGATTTAAAATAACTAAAGAAACGAATGGCATGAAAGGCGGGAAATTTTAAATCAATAAAATA
1 CAAGATTTAAAATAACTAAAGAAACGAATGGCATGAAAGGCGGGAAATTTTAAATCAATAAAATA
10274829 TACATAAAAATTTCAAAATAAATAATATAAATACAAAAGAAATTTGAAATAAATCAAAAATAGAG
66 TACATAAAAATTTCAAAATAAATAATATAAATACAAAAGAAATTTGAAATAAATCAAAAATAGAG
10274894 TTAAAAATAAATACTAT
131 TTAAAAATAAATACTAT
10274911 CAAGATTT-AAATAACTAAAGAAACGAATGGCATGAAAGGCGGGAAATTTTAAATCAATAAAATA
1 CAAGATTTAAAATAACTAAAGAAACGAATGGCATGAAAGGCGGGAAATTTTAAATCAATAAAATA
10274975 TACATAAAAATTTCAAAATAAATAAT-TAAAATACAAAAGAAATTTGAAATAAATCAAAAATAGA
66 TACATAAAAATTTCAAAATAAATAATAT-AAATACAAAAGAAATTTGAAATAAATCAAAAATAGA
10275039 GTTAAAAATAAATACTAT
130 GTTAAAAATAAATACTAT
10275057 ATGTAATAGC
Statistics
Matches: 145, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
145 1 0.01
146 136 0.94
147 8 0.06
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.25
Consensus pattern (147 bp):
CAAGATTTAAAATAACTAAAGAAACGAATGGCATGAAAGGCGGGAAATTTTAAATCAATAAAATA
TACATAAAAATTTCAAAATAAATAATATAAATACAAAAGAAATTTGAAATAAATCAAAAATAGAG
TTAAAAATAAATACTAT
Found at i:10275254 original size:19 final size:19
Alignment explanation
Indices: 10275230--10275645 Score: 643
Period size: 19 Copynumber: 21.9 Consensus size: 19
10275220 AATCTTCAAG
*
10275230 GATATGAAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275249 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275268 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275287 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275306 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275325 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275344 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275363 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275382 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275401 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275420 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275439 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275458 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275477 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275496 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275515 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275534 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275553 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275572 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
10275591 GATATGTAATCTTAGATGT
1 GATATGTAATCTTAGATAT
*
10275610 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
10275629 GATATGTAATCTTAGAT
1 GATATGTAATCTTAGAT
10275646 NNNNNNNNNN
Statistics
Matches: 356, Mismatches: 41, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 356 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:10275279 original size:38 final size:38
Alignment explanation
Indices: 10275230--10275645 Score: 823
Period size: 38 Copynumber: 10.9 Consensus size: 38
10275220 AATCTTCAAG
*
10275230 GATATGAAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275268 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275306 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275344 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275382 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275420 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275458 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275496 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275534 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275572 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
10275610 GATATGCAATCTTAGATATGATATGTAATCTTAGAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGAT
10275646 NNNNNNNNNN
Statistics
Matches: 377, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 377 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATGT
Found at i:10280947 original size:14 final size:15
Alignment explanation
Indices: 10280921--10280953 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10280911 TCCCAAGCTA
10280921 GGAAGGACCTTATGT
1 GGAAGGACCTTATGT
*
10280936 GGAAGG-CCTTATTT
1 GGAAGGACCTTATGT
10280950 GGAA
1 GGAA
10280954 AAGCGTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.27
Consensus pattern (15 bp):
GGAAGGACCTTATGT
Found at i:10282443 original size:88 final size:88
Alignment explanation
Indices: 10282281--10282954 Score: 798
Period size: 88 Copynumber: 7.7 Consensus size: 88
10282271 AATAGATCAG
* * * * * *
10282281 TGAAGATAGAAGATCTTGCCTTCCTGTACAGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCTT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTGCCT
*
10282346 CCCTGGGTTGCAGCGGAGCAGGT
66 CCCTAGGTTGCAGCGGAGCAGGT
*
10282369 TGAAAGTAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTGCCT
* **
10282434 CCCTAGGTTGCAGTGGAGCAGAC
66 CCCTAGGTTGCAGCGGAGCAGGT
* * * * * *
10282457 TGAAAATAGCAGATCTTGCCTTCTTGTACCGGCAACGAAGCAGATCAAAGACACTAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTGCCT
10282522 CCCTAGGTTGCAGCGGAGCAGGT
66 CCCTAGGTTGCAGCGGAGCAGGT
* *
10282545 TGAAAATAGCAGATCTTACCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTACCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTGCCT
**
10282610 CCCTAGGTTGCAGCGGAGCAGAC
66 CCCTAGGTTGCAGCGGAGCAGGT
* * * ** *
10282633 TGAAGATAGCAGATCTTGCCTTCTTGTAC-CAGCAATGAAGCAGATCAAAGACATCA-TCCTTGC
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGA-CAGCGAAGCAGATCAAAGACACCAGT-CTTGC
*
10282696 CTCCCTGGGTTGCAGCGGAGCAGGT
64 CTCCCTAGGTTGCAGCGGAGCAGGT
* * * *
10282721 TGAAAATAACAGATCTTGCCTTCCTATACTGACAGCCAAGCAGATCGAAGACACCAGTCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTGCCT
* **
10282786 CCCTAGGTTGCAGTGGAGCAGAC
66 CCCTAGGTTGCAGCGGAGCAGGT
* * * ** * * *
10282809 TGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAGCGAAGCAGATCGAAA-ACTTCGGCCTTGTC
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATC-AAAGACACCAGTCTTGCC
** * *
10282873 TCCCT-GAGCAGCAGTGGAGTAGGT
65 TCCCTAG-GTTGCAGCGGAGCAGGT
* * ** * * *
10282897 TCAAAATAGCAGATCTTACCTTCCTGTACTGGGAGTGAAGCAGATCGAAGACATCAGT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGT
10282955 ATTATTGCCT
Statistics
Matches: 496, Mismatches: 83, Indels: 14
0.84 0.14 0.02
Matches are distributed among these distances:
87 5 0.01
88 487 0.98
89 4 0.01
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.22
Consensus pattern (88 bp):
TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTCTTGCCT
CCCTAGGTTGCAGCGGAGCAGGT
Found at i:10282585 original size:176 final size:177
Alignment explanation
Indices: 10282281--10282954 Score: 989
Period size: 176 Copynumber: 3.8 Consensus size: 177
10282271 AATAGATCAG
* * * *
10282281 TGAAGATAGAAGATCTTGCCTTCCTGTACAGGCAGCGAAGCAGATCAAAGACAC-CAGCCTTGCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAACGAAGCAGATCAAAGACACTCAGCCTTGCC
* *
10282345 TCCCTGGGTTGCAGCGGAGCAGGTTGAAAGTAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGC
66 TCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTACCTTCCTGTACTGACAGCGAAGC
10282410 AGATCAAAGACACCAGTCTTGCCTCCCTAGGTTGCAGTGGAGCAGAC
131 AGATCAAAGACACCAGTCTTGCCTCCCTAGGTTGCAGTGGAGCAGAC
* *
10282457 TGAAAATAGCAGATCTTGCCTTCTTGTACCGGCAACGAAGCAGATCAAAGACACT-AGCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAACGAAGCAGATCAAAGACACTCAGCCTTGCC
*
10282521 TCCCTAGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTACCTTCCTGTACTGACAGCGAAGC
66 TCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTACCTTCCTGTACTGACAGCGAAGC
* *
10282586 AGATCAAAGACACCAGTCTTACCTCCCTAGGTTGCAGCGGAGCAGAC
131 AGATCAAAGACACCAGTCTTGCCTCCCTAGGTTGCAGTGGAGCAGAC
* * * *
10282633 TGAAGATAGCAGATCTTGCCTTCTTGTACCAGCAATGAAGCAGATCAAAGACA-TCATCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAACGAAGCAGATCAAAGACACTCAGCCTTGCC
* * * *
10282697 TCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAACAGATCTTGCCTTCCTATACTGACAGCCAAGC
66 TCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTACCTTCCTGTACTGACAGCGAAGC
*
10282762 AGATCGAAGACACCAGTCTTGCCTCCCTAGGTTGCAGTGGAGCAGAC
131 AGATCAAAGACACCAGTCTTGCCTCCCTAGGTTGCAGTGGAGCAGAC
* * * *
10282809 TGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAGCGAAGCAGATCGAAA-AC-TTCGGCCTTGT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAACGAAGCAGATC-AAAGACACTCAGCCTTGC
* ** * * * ** *
10282872 CTCCCTGAGCAGCAGTGGAGTAGGTTCAAAATAGCAGATCTTACCTTCCTGTACTGGGAGTGAAG
65 CTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTACCTTCCTGTACTGACAGCGAAG
* *
10282937 CAGATCGAAGACATCAGT
130 CAGATCAAAGACACCAGT
10282955 ATTATTGCCT
Statistics
Matches: 450, Mismatches: 44, Indels: 8
0.90 0.09 0.02
Matches are distributed among these distances:
175 1 0.00
176 446 0.99
177 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.22
Consensus pattern (177 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAACGAAGCAGATCAAAGACACTCAGCCTTGCC
TCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTACCTTCCTGTACTGACAGCGAAGC
AGATCAAAGACACCAGTCTTGCCTCCCTAGGTTGCAGTGGAGCAGAC
Found at i:10284660 original size:3 final size:3
Alignment explanation
Indices: 10284652--10284681 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10284642 ATGTGAGGTA
10284652 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10284682 TAAATGAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10286346 original size:19 final size:19
Alignment explanation
Indices: 10286322--10286371 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
10286312 AATCTTCAAG
10286322 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
10286341 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10286360 GATATGCAATCT
1 GATATGCAATCT
10286372 NNNNNNNNNN
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:10288397 original size:12 final size:12
Alignment explanation
Indices: 10288366--10288398 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
10288356 ATGGTAATCC
*
10288366 TAATATAAATAA
1 TAATATATATAA
10288378 TAATATATATAA
1 TAATATATATAA
10288390 TAATATATA
1 TAATATATA
10288399 CAAAAAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
TAATATATATAA
Found at i:10288478 original size:25 final size:26
Alignment explanation
Indices: 10288448--10288496 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
10288438 TTTAAGAATA
*
10288448 GATATATAAAACAAT-TTAAATAAGT
1 GATATATAAAAAAATATTAAATAAGT
10288473 GATATATAAAAAAATATTAAATAA
1 GATATATAAAAAAATATTAAATAA
10288497 ATAGTACATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (26 bp):
GATATATAAAAAAATATTAAATAAGT
Found at i:10290748 original size:9 final size:9
Alignment explanation
Indices: 10290714--10290770 Score: 50
Period size: 9 Copynumber: 6.7 Consensus size: 9
10290704 AGTAACTTTA
*
10290714 ATAATAATG
1 ATAATAAAG
10290723 ATAATAATA-
1 ATAATAA-AG
10290732 ATAATAAAG
1 ATAATAAAG
10290741 ATAATAAA-
1 ATAATAAAG
* *
10290749 ATGA-AAAC
1 ATAATAAAG
10290757 ATAATAAAG
1 ATAATAAAG
10290766 A-AATA
1 ATAATA
10290771 GAAATAAAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
7 3 0.08
8 11 0.28
9 26 0.65
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (9 bp):
ATAATAAAG
Found at i:10291565 original size:25 final size:25
Alignment explanation
Indices: 10291517--10291565 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
10291507 CATAATTCAA
* *
10291517 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATGGATTGATTATGAATATT
*
10291542 ATGAAATGTATTGATTATGAATAT
1 ATGAAATGGATTGATTATGAATAT
10291566 ATGTGTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (25 bp):
ATGAAATGGATTGATTATGAATATT
Found at i:10293355 original size:49 final size:50
Alignment explanation
Indices: 10293272--10293366 Score: 156
Period size: 49 Copynumber: 1.9 Consensus size: 50
10293262 TCAAGAAGGG
* *
10293272 ATAAATAGTGATAAAGAGTGTAGACAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAAGAGTGTAGACAGTGAAAGACCAAGTTTAGCAATGT
*
10293322 ATAAATAGTGAT-AATAGTGTAGACAGTGAAAGACCAAGTTTAGCA
1 ATAAATAGTGATAAAGAGTGTAGACAGTGAAAGACCAAGTTTAGCA
10293367 TTGCATAGCA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
49 30 0.71
50 12 0.29
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.25
Consensus pattern (50 bp):
ATAAATAGTGATAAAGAGTGTAGACAGTGAAAGACCAAGTTTAGCAATGT
Found at i:10299277 original size:105 final size:101
Alignment explanation
Indices: 10299093--10299290 Score: 263
Period size: 105 Copynumber: 1.9 Consensus size: 101
10299083 GAATTGGTAA
* * * * * *
10299093 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGTTGTGTTATGTCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
10299158 TGAAAAGACCATAACTGGGTTATGGCACCTTGCACG
66 TGAAAAGACCATAACTGGGTTATGGCACCTTGCACG
*
10299194 TAAGACCATGGTTGGACCATGGCAGTATAG-ATACATGTGTAAGACCATAGCTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--AT-GTATA-A-ATGTAAGACCATAGCTGGGCTATGGCAT
* *
10299258 TCTGATGATAAGACCATAACTGGGTTATGGCAC
61 TCTAATGAAAAGACCATAACTGGGTTATGGCAC
10299291 TACAAATGTA
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
101 24 0.29
103 4 0.05
104 2 0.02
105 53 0.64
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TGAAAAGACCATAACTGGGTTATGGCACCTTGCACG
Found at i:10299302 original size:105 final size:101
Alignment explanation
Indices: 10299093--10299352 Score: 260
Period size: 105 Copynumber: 2.6 Consensus size: 101
10299083 GAATTGGTAA
* * * * * *
10299093 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGTTGTGTTATGTCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
*
10299158 TGAAAAGACCATAACTGGGTTATGGCACCTTGCACG
66 TGAAAAGACCATAACTGGGTTATGGCACCTTACACG
*
10299194 TAAGACCATGGTTGGACCATGGCAGTATAG-ATACATGTGTAAGACCATAGCTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--AT-GTATA-A-ATGTAAGACCATAGCTGGGCTATGGCAT
* * *
10299258 TCTGATGATAAGACCATAACTGGGTTATGGCA-C-TACAAATG
61 TCTAATGAAAAGACCATAACTGGGTTATGGCACCTTAC--ACG
** * * * * *
10299299 TAAGACCATGGCAGGGCCATGGCAATGCAT--GTGTAAGACCATAGTTGGACTATG
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATG
10299353 ACACAAAAAG
Statistics
Matches: 135, Mismatches: 16, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
99 22 0.16
101 24 0.18
102 1 0.01
103 10 0.07
104 3 0.02
105 75 0.56
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TGAAAAGACCATAACTGGGTTATGGCACCTTACACG
Found at i:10299303 original size:33 final size:32
Alignment explanation
Indices: 10299231--10299307 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 32
10299221 TAGATACATG
* * **
10299231 TGTAAGACCATAGCTGGGCTATGGCATTCTGA
1 TGTAAGACCATAACTGGGCTATGGCATACAAA
*
10299263 TGATAAGACCATAACTGGGTTATGGCACTACAAA
1 TG-TAAGACCATAACTGGGCTATGGCA-TACAAA
10299297 TGTAAGACCAT
1 TGTAAGACCAT
10299308 GGCAGGGCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
32 2 0.05
33 31 0.82
34 5 0.13
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (32 bp):
TGTAAGACCATAACTGGGCTATGGCATACAAA
Found at i:10301361 original size:155 final size:156
Alignment explanation
Indices: 10301186--10301496 Score: 615
Period size: 155 Copynumber: 2.0 Consensus size: 156
10301176 TAACATGAAA
10301186 TTTATTTATTAAAATAATAATTTTATAAATAAAATAATTTAATGGGTGATCTTCCACGACCAATC
1 TTTATTTATTAAAATAATAATTTTATAAATAAAATAATTTAATGGGTGATCTTCCACGACCAATC
10301251 ATGTTATTTGTATCCCTTTTCACAAAAATTTAGTAATAATTTATGTTTTTACATTTTAAATAAAA
66 ATGTTATTTGTATCCCTTTTCACAAAAATTTAGTAATAATTTATGTTTTTACATTTTAAATAAAA
10301316 AAAGTACGAACTTTAGTGGTTTTTAT
131 AAAGTACGAACTTTAGTGGTTTTTAT
10301342 TTTATTTATT-AAATAATAATTTTATAAATAAAATAATTTAATGGGTGATCTTCCACGACCAATC
1 TTTATTTATTAAAATAATAATTTTATAAATAAAATAATTTAATGGGTGATCTTCCACGACCAATC
10301406 ATGTTATTTGTATCCCTTTTCACAAAAATTTAGTAATAATTTATGTTTTTACATTTTAAATAAAA
66 ATGTTATTTGTATCCCTTTTCACAAAAATTTAGTAATAATTTATGTTTTTACATTTTAAATAAAA
10301471 AAAGTACGAACTTTAGTGGTTTTTAT
131 AAAGTACGAACTTTAGTGGTTTTTAT
10301497 AGTATTTTAT
Statistics
Matches: 155, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
155 145 0.94
156 10 0.06
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.44
Consensus pattern (156 bp):
TTTATTTATTAAAATAATAATTTTATAAATAAAATAATTTAATGGGTGATCTTCCACGACCAATC
ATGTTATTTGTATCCCTTTTCACAAAAATTTAGTAATAATTTATGTTTTTACATTTTAAATAAAA
AAAGTACGAACTTTAGTGGTTTTTAT
Found at i:10309814 original size:76 final size:76
Alignment explanation
Indices: 10309729--10309881 Score: 297
Period size: 76 Copynumber: 2.0 Consensus size: 76
10309719 GATGATTAAG
*
10309729 AAATTGGTTCATTTTCATATTTGTTTTTTTTTAATATGATTAATTTTAATCCCCTGATTTAATCA
1 AAATTGGTTCATTTTCATATTTGTTTTTTTTTAATATGATTAATTTTAATCCCCTGATTCAATCA
10309794 TTAATTAATCT
66 TTAATTAATCT
10309805 AAATTGGTTCATTTTCATATTTGTTTTTTTTTAATATGATTAATTTTAATCCCCTGATTCAATCA
1 AAATTGGTTCATTTTCATATTTGTTTTTTTTTAATATGATTAATTTTAATCCCCTGATTCAATCA
10309870 TTAATTAATCT
66 TTAATTAATCT
10309881 A
1 A
10309882 TGACCTTTAC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.29, C:0.11, G:0.07, T:0.53
Consensus pattern (76 bp):
AAATTGGTTCATTTTCATATTTGTTTTTTTTTAATATGATTAATTTTAATCCCCTGATTCAATCA
TTAATTAATCT
Found at i:10311354 original size:73 final size:74
Alignment explanation
Indices: 10311162--10311425 Score: 298
Period size: 73 Copynumber: 3.5 Consensus size: 74
10311152 CAACCAACTT
* * * * *
10311162 CAAAGATTTGCGCCCAACACTAGTCAGATTAACTGACGATATTAATTGCGTGCCCAG-ATTGGTC
1 CAAAGATTT--GCCCAACGCTAGTCAGATAAACTAACGATATTAATTGCGTGCCCAGCACTAGTC
10311226 GAATAAATCGA
64 GAATAAATCGA
* * * * * * *
10311237 CAAATATTTGCATCCAACGCTAGTCAAATAAACCAACGTTATTAACTGGGTGCCCAGCACTAGTT
1 CAAAGATTTGC--CCAACGCTAGTCAGATAAACTAACGATATTAATTGCGTGCCCAGCACTAGTC
10311302 GAATAAATCGA
64 GAATAAATCGA
* * * *
10311313 CAAAGATTTG-CCTACGCTAGTCGGATAAACTAACGATATTAATTGTGTGCCCAGCACTAGTCAA
1 CAAAGATTTGCCCAACGCTAGTCAGATAAACTAACGATATTAATTGCGTGCCCAGCACTAGTCGA
10311377 ATAAATCGA
66 ATAAATCGA
* *
10311386 CAAAGATTTGCGCCCAACGCTAGTCGGATAAACTGACGAT
1 CAAAGATTT--GCCCAACGCTAGTCAGATAAACTAACGAT
10311426 CACATACGTA
Statistics
Matches: 159, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
73 65 0.41
75 45 0.28
76 49 0.31
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.25
Consensus pattern (74 bp):
CAAAGATTTGCCCAACGCTAGTCAGATAAACTAACGATATTAATTGCGTGCCCAGCACTAGTCGA
ATAAATCGA
Found at i:10311417 original size:36 final size:35
Alignment explanation
Indices: 10311304--10311417 Score: 81
Period size: 36 Copynumber: 3.1 Consensus size: 35
10311294 CACTAGTTGA
*
10311304 ATAAATCGACAAAGATTT-G-CCTACGCTAGTCGG
1 ATAAATCGACAAAGATTTGGCCCAACGCTAGTCGG
* * * * **
10311337 ATAAACTAACGATATTA-ATTGTGTGCCCAGCACTAGTCAA
1 ATAAA-T--CGACA-AAGATT-TG-GCCCAACGCTAGTCGG
10311377 ATAAATCGACAAAGATTTGCGCCCAACGCTAGTCGG
1 ATAAATCGACAAAGATTTG-GCCCAACGCTAGTCGG
10311413 ATAAA
1 ATAAA
10311418 CTGACGATCA
Statistics
Matches: 58, Mismatches: 14, Indels: 15
0.67 0.16 0.17
Matches are distributed among these distances:
33 5 0.09
34 1 0.02
36 27 0.47
37 9 0.16
39 2 0.03
40 14 0.24
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (35 bp):
ATAAATCGACAAAGATTTGGCCCAACGCTAGTCGG
Found at i:10323669 original size:22 final size:22
Alignment explanation
Indices: 10323643--10323689 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
10323633 AAAGTCCTTC
*
10323643 TAAAAATTATTAA-AAAAATCT
1 TAAAAATTATAAACAAAAATCT
*
10323664 TAAAAATTATAAACAAAAATTT
1 TAAAAATTATAAACAAAAATCT
10323686 TAAA
1 TAAA
10323690 GCTATAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAAAATTATAAACAAAAATCT
Found at i:10332143 original size:20 final size:19
Alignment explanation
Indices: 10332118--10332171 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
10332108 AAAACATTTT
**
10332118 TAAATGTGTTTTAATTTATC
1 TAAATGT-TTTTAATCAATC
10332138 TAAATGTTTTTGAATCAATC
1 TAAATGTTTTT-AATCAATC
10332158 TAAAATGTTTTTAA
1 T-AAATGTTTTTAA
10332172 GTGTTTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.13
20 16 0.53
21 10 0.33
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (19 bp):
TAAATGTTTTTAATCAATC
Found at i:10332925 original size:16 final size:17
Alignment explanation
Indices: 10332898--10332930 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10332888 ATAAAACATT
*
10332898 AATTAGTAATATTTATA
1 AATTAGTAATATATATA
10332915 AATTA-TAATATATATA
1 AATTAGTAATATATATA
10332931 TTATTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
AATTAGTAATATATATA
Found at i:10350942 original size:16 final size:15
Alignment explanation
Indices: 10350917--10350946 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10350907 TAAGGTTATC
10350917 TAATTAAAATTTTAA
1 TAATTAAAATTTTAA
10350932 TAATATAAAATTTTA
1 TAAT-TAAAATTTTA
10350947 GAAAGAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATTAAAATTTTAA
Found at i:10352670 original size:22 final size:22
Alignment explanation
Indices: 10352644--10352689 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
10352634 ATTAATTCAC
10352644 CACATTTTCATATAGACATTTT
1 CACATTTTCATATAGACATTTT
*
10352666 CACATTTTCATATAGACCTTTT
1 CACATTTTCATATAGACATTTT
10352688 CA
1 CA
10352690 GATGCTATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.43
Consensus pattern (22 bp):
CACATTTTCATATAGACATTTT
Found at i:10370269 original size:3 final size:3
Alignment explanation
Indices: 10370261--10370292 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10370251 TTGATTCCAT
10370261 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10370293 TAAACTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10372822 original size:20 final size:19
Alignment explanation
Indices: 10372788--10372851 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 19
10372778 GACATGCTTA
10372788 AAAACAATTTAACTT-ATTG
1 AAAA-AATTTAACTTGATTG
10372807 ACAAAAATTCTAACTTGATTG
1 A-AAAAATT-TAACTTGATTG
* *
10372828 AAATAATTTTAACTTGATTT
1 AAA-AAATTTAACTTGATTG
10372848 AAAA
1 AAAA
10372852 GTTGATTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 6 0.15
20 24 0.62
21 9 0.23
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (19 bp):
AAAAAATTTAACTTGATTG
Found at i:10374542 original size:7 final size:7
Alignment explanation
Indices: 10374532--10374557 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10374522 CTACCACTCA
10374532 TCACTTG
1 TCACTTG
10374539 TCACTTG
1 TCACTTG
10374546 TCACTTG
1 TCACTTG
10374553 TCACT
1 TCACT
10374558 GATCAGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.31, G:0.12, T:0.42
Consensus pattern (7 bp):
TCACTTG
Found at i:10374615 original size:51 final size:51
Alignment explanation
Indices: 10374534--10374652 Score: 220
Period size: 51 Copynumber: 2.3 Consensus size: 51
10374524 ACCACTCATC
*
10374534 ACTTGTCACTTGTCACTTGTCACTGATCAGATAAGTGTACCTGAAGCTACT
1 ACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTACCTGAAGCTACT
*
10374585 ACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACT
1 ACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTACCTGAAGCTACT
10374636 ACTTATCACTTGTCACT
1 ACTTATCACTTGTCACT
10374653 GATCAGAAAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (51 bp):
ACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTACCTGAAGCTACT
Found at i:10381759 original size:20 final size:20
Alignment explanation
Indices: 10381736--10381774 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10381726 TTCTGACATG
*
10381736 TTTA-AAAATATTTTAACTTC
1 TTTACAAAA-ATTCTAACTTC
10381756 TTTACAAAAATTCTAACTT
1 TTTACAAAAATTCTAACTT
10381775 GATTGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTACAAAAATTCTAACTTC
Found at i:10400771 original size:2 final size:2
Alignment explanation
Indices: 10400764--10400790 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10400754 AGTTAGAAAT
10400764 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
10400791 ATATATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:10401172 original size:3 final size:3
Alignment explanation
Indices: 10401164--10401232 Score: 111
Period size: 3 Copynumber: 23.0 Consensus size: 3
10401154 TCTAGTTGTA
* *
10401164 TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TGC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
10401212 TTC TTC TTC TTC TGC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC
10401233 ATTTTTCTAG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:10402282 original size:32 final size:32
Alignment explanation
Indices: 10402241--10402307 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
10402231 GTACGCCAGG
10402241 GCACGATCAGTCATTCATTCTATGAAAACCAA
1 GCACGATCAGTCATTCATTCTATGAAAACCAA
10402273 GCACGATCAGTCATTCATTCTATGAAAACCAA
1 GCACGATCAGTCATTCATTCTATGAAAACCAA
10402305 GCA
1 GCA
10402308 GGGGCTTAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.24
Consensus pattern (32 bp):
GCACGATCAGTCATTCATTCTATGAAAACCAA
Found at i:10408215 original size:47 final size:48
Alignment explanation
Indices: 10408099--10408220 Score: 129
Period size: 51 Copynumber: 2.5 Consensus size: 48
10408089 TAAATATAAG
* *
10408099 ATTTGAATAAATAATATAAACAAATATTTATATTTATGTAAAAACACCAT
1 ATTTGAA-AAAAAAT-TAAATAAATATTTATATTTATGTAAAAACACCAT
** * *
10408149 ATCTAAATAAAAAAGATTAAATAAATATTTATATTTAT-TTAAAACATCAT
1 AT-TTGA-AAAAAA-ATTAAATAAATATTTATATTTATGTAAAAACACCAT
*
10408199 ATTTGAAAAACAATTAAATAAA
1 ATTTGAAAAAAAATTAAATAAA
10408221 CAAGATCTTG
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
47 10 0.17
48 5 0.08
49 2 0.03
50 14 0.23
51 26 0.43
52 3 0.05
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.35
Consensus pattern (48 bp):
ATTTGAAAAAAAATTAAATAAATATTTATATTTATGTAAAAACACCAT
Found at i:10415209 original size:34 final size:34
Alignment explanation
Indices: 10415166--10415233 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
10415156 AGAAACCTAA
10415166 GCATGTAATAAACAAGTAAATGGAAAGCTCCCAC
1 GCATGTAATAAACAAGTAAATGGAAAGCTCCCAC
10415200 GCATGTAATAAACAAGTAAATGGAAAGCTCCCAC
1 GCATGTAATAAACAAGTAAATGGAAAGCTCCCAC
10415234 TTCATTTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.18
Consensus pattern (34 bp):
GCATGTAATAAACAAGTAAATGGAAAGCTCCCAC
Found at i:10416966 original size:19 final size:19
Alignment explanation
Indices: 10416938--10416977 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
10416928 ATTAATTTTG
10416938 ATTAAGCAAAATTAATT-AA
1 ATTAAGC-AAATTAATTGAA
*
10416957 ATTAATCAAATTAATTGAA
1 ATTAAGCAAATTAATTGAA
10416976 AT
1 AT
10416978 AAATATGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
ATTAAGCAAATTAATTGAA
Found at i:10442097 original size:31 final size:30
Alignment explanation
Indices: 10442062--10442121 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
10442052 GGAGGTGGGA
*
10442062 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
10442093 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
10442122 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:10445924 original size:110 final size:110
Alignment explanation
Indices: 10445731--10445954 Score: 360
Period size: 110 Copynumber: 2.0 Consensus size: 110
10445721 GAAGATAAGC
* * *
10445731 GAGTATCAACCAATTGATTAGTTAATTAGAGGCCAGGAGGTAATAATTTATTAATCGATAGCTAA
1 GAGTATCAACCAATTGATGAGTTAATTAGAGGCCAGGAGGTAATAATTGATTAATCGATAACTAA
*
10445796 TCCACTCTAAAACCCTAATCTGAAGTTAGTTACAAACCCTGAAGT
66 TCCACCCTAAAACCCTAATCTGAAGTTAGTTACAAACCCTGAAGT
* * *
10445841 GAGTATCGACTAATTGATGAGTTAATTAGAGGCC-GAGAGGTAATAATTGGTTAATCGATAACTA
1 GAGTATCAACCAATTGATGAGTTAATTAGAGGCCAG-GAGGTAATAATTGATTAATCGATAACTA
*
10445905 ATCCACCCTAAAACCCTAATCTGAAGTTATTTACAAACCCTGAAGT
65 ATCCACCCTAAAACCCTAATCTGAAGTTAGTTACAAACCCTGAAGT
10445951 GAGT
1 GAGT
10445955 TAATCTTCCT
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
109 1 0.01
110 104 0.99
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Consensus pattern (110 bp):
GAGTATCAACCAATTGATGAGTTAATTAGAGGCCAGGAGGTAATAATTGATTAATCGATAACTAA
TCCACCCTAAAACCCTAATCTGAAGTTAGTTACAAACCCTGAAGT
Found at i:10447596 original size:57 final size:58
Alignment explanation
Indices: 10447533--10447649 Score: 146
Period size: 57 Copynumber: 2.0 Consensus size: 58
10447523 ATTTTATTCA
* * *
10447533 TTTTATTTTTATTTTGGAAAAAATCACATTCATTTCCAAATAATTC-TATTTCTCCAT
1 TTTTATTTTCATTTTGGAAAAAACCACAATCATTTCCAAATAATTCATATTTCTCCAT
* * * ** *
10447590 TTTTATTTTCATTTTGGAGAAAACCATAATCATTTTCAAATGTTTCATATTTCTCTAT
1 TTTTATTTTCATTTTGGAAAAAACCACAATCATTTCCAAATAATTCATATTTCTCCAT
10447648 TT
1 TT
10447650 CACCATTTCT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 38 0.76
58 12 0.24
ACGTcount: A:0.30, C:0.15, G:0.05, T:0.50
Consensus pattern (58 bp):
TTTTATTTTCATTTTGGAAAAAACCACAATCATTTCCAAATAATTCATATTTCTCCAT
Found at i:10448525 original size:8 final size:8
Alignment explanation
Indices: 10448514--10448550 Score: 65
Period size: 8 Copynumber: 4.5 Consensus size: 8
10448504 ATGAGTAAAA
10448514 TATTTTAT
1 TATTTTAT
10448522 TATTTTAT
1 TATTTTAT
10448530 TATTTTAT
1 TATTTTAT
10448538 TATTTTAT
1 TATTTTAT
10448546 ATATT
1 -TATT
10448551 AAATTGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 24 0.86
9 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTTTAT
Found at i:10448545 original size:131 final size:131
Alignment explanation
Indices: 10448409--10448839 Score: 862
Period size: 131 Copynumber: 3.3 Consensus size: 131
10448399 AATCTTTGAT
10448409 TTTTATATATTAAATTGATGATATTATTATATTATGAAATAAATTAAGAAAAGAGAAGTGTAAGG
1 TTTTATATATTAAATTGATGATATTATTATATTATGAAATAAATTAAGAAAAGAGAAGTGTAAGG
10448474 TAAAAATAAAATACAAATGTATTAATTTAAATGAGTAAAATATTTTATTATTTTATTATTTTATT
66 TAAAAATAAAATACAAATGTATTAATTTAAATGAGTAAAATATTTTATTATTTTATTATTTTATT
10448539 A
131 A
10448540 TTTTATATATTAAATTGATGATATTATTATATTATGAAATAAATTAAGAAAAGAGAAGTGTAAGG
1 TTTTATATATTAAATTGATGATATTATTATATTATGAAATAAATTAAGAAAAGAGAAGTGTAAGG
10448605 TAAAAATAAAATACAAATGTATTAATTTAAATGAGTAAAATATTTTATTATTTTATTATTTTATT
66 TAAAAATAAAATACAAATGTATTAATTTAAATGAGTAAAATATTTTATTATTTTATTATTTTATT
10448670 A
131 A
10448671 TTTTATATATTAAATTGATGATATTATTATATTATGAAATAAATTAAGAAAAGAGAAGTGTAAGG
1 TTTTATATATTAAATTGATGATATTATTATATTATGAAATAAATTAAGAAAAGAGAAGTGTAAGG
10448736 TAAAAATAAAATACAAATGTATTAATTTAAATGAGTAAAATATTTTATTATTTTATTATTTTATT
66 TAAAAATAAAATACAAATGTATTAATTTAAATGAGTAAAATATTTTATTATTTTATTATTTTATT
10448801 A
131 A
10448802 TTTTATATATTAAATTGATGATATTATTATATTATGAA
1 TTTTATATATTAAATTGATGATATTATTATATTATGAA
10448840 TGCATACAAT
Statistics
Matches: 300, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 300 1.00
ACGTcount: A:0.46, C:0.01, G:0.10, T:0.44
Consensus pattern (131 bp):
TTTTATATATTAAATTGATGATATTATTATATTATGAAATAAATTAAGAAAAGAGAAGTGTAAGG
TAAAAATAAAATACAAATGTATTAATTTAAATGAGTAAAATATTTTATTATTTTATTATTTTATT
A
Found at i:10448656 original size:8 final size:8
Alignment explanation
Indices: 10448645--10448681 Score: 65
Period size: 8 Copynumber: 4.5 Consensus size: 8
10448635 ATGAGTAAAA
10448645 TATTTTAT
1 TATTTTAT
10448653 TATTTTAT
1 TATTTTAT
10448661 TATTTTAT
1 TATTTTAT
10448669 TATTTTAT
1 TATTTTAT
10448677 ATATT
1 -TATT
10448682 AAATTGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 24 0.86
9 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTTTAT
Found at i:10448787 original size:8 final size:8
Alignment explanation
Indices: 10448776--10448812 Score: 65
Period size: 8 Copynumber: 4.5 Consensus size: 8
10448766 ATGAGTAAAA
10448776 TATTTTAT
1 TATTTTAT
10448784 TATTTTAT
1 TATTTTAT
10448792 TATTTTAT
1 TATTTTAT
10448800 TATTTTAT
1 TATTTTAT
10448808 ATATT
1 -TATT
10448813 AAATTGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 24 0.86
9 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTTTAT
Found at i:10449201 original size:29 final size:29
Alignment explanation
Indices: 10449160--10449217 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
10449150 TTTTTTAGTA
10449160 GGGTTCATGTTGAATA-AATGATTGAATTAG
1 GGGTTCATGTTG-ATAGAATGATTG-ATTAG
* *
10449190 GGGTTTAT-TTGATAGAATTATTGATTAG
1 GGGTTCATGTTGATAGAATGATTGATTAG
10449218 AATTGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 8 0.32
29 10 0.40
30 7 0.28
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.41
Consensus pattern (29 bp):
GGGTTCATGTTGATAGAATGATTGATTAG
Found at i:10449317 original size:19 final size:20
Alignment explanation
Indices: 10449284--10449323 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
10449274 AAATTGAAAG
10449284 AAATTCGAAATTATGAAATT
1 AAATTCGAAATTATGAAATT
*
10449304 AAATTTGAAA-TATGAAATT
1 AAATTCGAAATTATGAAATT
10449323 A
1 A
10449324 TGATGAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.35
Consensus pattern (20 bp):
AAATTCGAAATTATGAAATT
Found at i:10449747 original size:18 final size:17
Alignment explanation
Indices: 10449720--10449770 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
10449710 AGTGAATGAA
*
10449720 AAAGTGAATTTGATATTG
1 AAAGTGAATTTGA-AATG
*
10449738 AAAGTAAATTTTGAAATG
1 AAAGTGAA-TTTGAAATG
10449756 AAAGTGAATTT-AAAT
1 AAAGTGAATTTGAAAT
10449771 TGAGAATTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 4 0.14
17 3 0.10
18 17 0.59
19 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (17 bp):
AAAGTGAATTTGAAATG
Found at i:10452132 original size:75 final size:75
Alignment explanation
Indices: 10452023--10452173 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
10452013 TAAGTGAGTT
*
10452023 AGTATTTTATTATTTATTATTTCTAGTATTATCATAATGTCTTATTAAAATTGGGTTAGAAAATT
1 AGTACTTTATTATTTATTATTTCTAGTATTATCATAATGTCTTATTAAAATTGGGTTAGAAAATT
10452088 TTGACATTTA
66 TTGACATTTA
10452098 AGTACTTTATTATTTATTATTTCTAGTATTATCATAATGTCTTATTAAAATTGGGTTAGAAAATT
1 AGTACTTTATTATTTATTATTTCTAGTATTATCATAATGTCTTATTAAAATTGGGTTAGAAAATT
10452163 TTGACATTTA
66 TTGACATTTA
10452173 A
1 A
10452174 ATAGTTAATT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.50
Consensus pattern (75 bp):
AGTACTTTATTATTTATTATTTCTAGTATTATCATAATGTCTTATTAAAATTGGGTTAGAAAATT
TTGACATTTA
Found at i:10464074 original size:12 final size:12
Alignment explanation
Indices: 10464057--10464084 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
10464047 AGTTTTGAGT
10464057 GAATGCTCTCAA
1 GAATGCTCTCAA
10464069 GAATGCTCTCAA
1 GAATGCTCTCAA
10464081 GAAT
1 GAAT
10464085 TCTATTACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (12 bp):
GAATGCTCTCAA
Found at i:10470840 original size:13 final size:12
Alignment explanation
Indices: 10470817--10470843 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10470807 AATCCTTAGG
10470817 TTTAGTTTTTTT
1 TTTAGTTTTTTT
10470829 TTTAGTTTTTTT
1 TTTAGTTTTTTT
10470841 TTT
1 TTT
10470844 GTAAATGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (12 bp):
TTTAGTTTTTTT
Found at i:10472964 original size:61 final size:61
Alignment explanation
Indices: 10472868--10472984 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 61
10472858 GACAAATCAC
* * * *
10472868 ATTAATATTCAATTAATAAAATATTATCTAGATAAATATTAAATTAAATTTAATATCTCAT
1 ATTAATACTAAATTAATAAAATACTATCTAAATAAATATTAAATTAAATTTAATATCTCAT
* *
10472929 ATTAATACTAAATTAATAAAATACTATCTAAATAAATATTTAATTTAATTTAATAT
1 ATTAATACTAAATTAATAAAATACTATCTAAATAAATATTAAATTAAATTTAATAT
10472985 TAAATTCATT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (61 bp):
ATTAATACTAAATTAATAAAATACTATCTAAATAAATATTAAATTAAATTTAATATCTCAT
Found at i:10475033 original size:178 final size:178
Alignment explanation
Indices: 10474734--10475093 Score: 569
Period size: 178 Copynumber: 2.0 Consensus size: 178
10474724 AATTTAAATT
* *
10474734 CTCTCTGCATGCAAATGAATTATGGTTTTCCTACATTTGAAAGCCTTCTTTTTTATATTGATATG
1 CTCTCTGCATGCAAATGAATTATGATTTTCCTACATTTGAAAGCCATCTTTTTTATATTGATATG
* * *
10474799 ATTATTATGTTTAGCTGATCGAGAAGGAGGAGGCTCAAGTGATAAGGAAAAGCTAAGCAAGTGTA
66 ATTATTATGTTTAGCTAACCGAGAAGGAGGAGGCTCAAGTGATAAGGAAAAGCTAAGCAAATGTA
* *
10474864 ATTGGTACCAACTTTCAGGTATTTTGCTGGTGAGTTTCTAAACTCAAA
131 ATTAGTACCAACTTTCAGGTATTTTGCTGGTGAGTTTCTAAAATCAAA
* * *
10474912 CTCTCTGTATGCAAATGAATTATGATTTTCTTACATTTGAAAGCCATCTTTTTTATCTTGATATG
1 CTCTCTGCATGCAAATGAATTATGATTTTCCTACATTTGAAAGCCATCTTTTTTATATTGATATG
* *
10474977 ATTATTATGTTTAGCTAACCGAG-AGTGATGAGGCTCAAGTGATAAGGAAAAGCTAAGTAAATGT
66 ATTATTATGTTTAGCTAACCGAGAAG-GAGGAGGCTCAAGTGATAAGGAAAAGCTAAGCAAATGT
** *
10475041 AATTAGTACCGCCTTTCAGGTATTTTTCTGGTGAGTTTCTAAAATCAAA
130 AATTAGTACCAACTTTCAGGTATTTTGCTGGTGAGTTTCTAAAATCAAA
10475090 CTCT
1 CTCT
10475094 ATGTGGTTGT
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
177 2 0.01
178 164 0.99
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (178 bp):
CTCTCTGCATGCAAATGAATTATGATTTTCCTACATTTGAAAGCCATCTTTTTTATATTGATATG
ATTATTATGTTTAGCTAACCGAGAAGGAGGAGGCTCAAGTGATAAGGAAAAGCTAAGCAAATGTA
ATTAGTACCAACTTTCAGGTATTTTGCTGGTGAGTTTCTAAAATCAAA
Found at i:10477264 original size:38 final size:38
Alignment explanation
Indices: 10477213--10477288 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
10477203 TGAATCCATA
*
10477213 TGCATGACAACCCGTCGGACTTGTTCTTTGTGTTTCAT
1 TGCATGACAACCCGTCGGACTTATTCTTTGTGTTTCAT
10477251 TGCATGACAACCCGTCGGACTTATTCTTTGTGTTTCAT
1 TGCATGACAACCCGTCGGACTTATTCTTTGTGTTTCAT
10477289 GAAAAAGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (38 bp):
TGCATGACAACCCGTCGGACTTATTCTTTGTGTTTCAT
Found at i:10480853 original size:17 final size:17
Alignment explanation
Indices: 10480819--10480855 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10480809 CAAAATTAGG
10480819 TATTTTTTAATTTCTTT
1 TATTTTTTAATTTCTTT
10480836 TATTTCTTTAATTT-TTT
1 TATTT-TTTAATTTCTTT
10480853 TAT
1 TAT
10480856 ATTTATCACC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TATTTTTTAATTTCTTT
Found at i:10488098 original size:24 final size:22
Alignment explanation
Indices: 10488043--10488108 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
10488033 ACACAACGCA
*
10488043 TTGTGGATAAACCACCAGTAAT
1 TTGTGGATAAACCACAAGTAAT
** *
10488065 TTGTAAATAAACTACAAGTAAAAT
1 TTGTGGATAAACCACAAGT--AAT
*
10488089 TTGTGGATAAACCACCAGTA
1 TTGTGGATAAACCACAAGTA
10488109 TTTTCAGATA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
22 16 0.47
24 18 0.53
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (22 bp):
TTGTGGATAAACCACAAGTAAT
Found at i:10491181 original size:265 final size:266
Alignment explanation
Indices: 10490869--10491399 Score: 1055
Period size: 265 Copynumber: 2.0 Consensus size: 266
10490859 TATAATAAAA
10490869 AATAGATTATAAGAAATTTATAAATTTTTAGAAAATATTAAAAAATAATTAAAAATAATACAAAT
1 AATAGATTATAAGAAATTTATAAATTTTTAGAAAATATTAAAAAATAATTAAAAATAATACAAAT
10490934 TTTAAGATTTAATTTTTTATTTGAAATTAGAAAAACGTAAAAAAATTATTAAAAATGCATGTTCA
66 TTTAAGATTTAATTTTTTATTTGAAATTAGAAAAACGTAAAAAAATTATTAAAAATGCATGTTCA
10490999 AAATGAGTGGGATAAATGCAGGTTTATCTGGTCAAAATTCTAAAAGAATATATCTAAAACTGAGA
131 AAATGAGTGGGATAAATGCAGGTTTATCTGGTCAAAATTCTAAAAGAATATATCTAAAACTGAGA
10491064 TTTTAAATTAAAATTATTAGACGTGCAATTTTTAGTAATTTATATAAATCTCTATTATTTTTTAT
196 TTTTAAATTAAAATTATTAGACGTGCAATTTTTAGTAATTTATATAAATCTCTATTATTTTTTAT
10491129 ATTTTT
261 ATTTTT
10491135 AATAGATTAT-AGAAATTTATAAATTTTTAGAAAATATTAAAAAATAATTAAAAATAATACAAAT
1 AATAGATTATAAGAAATTTATAAATTTTTAGAAAATATTAAAAAATAATTAAAAATAATACAAAT
10491199 TTTAAGATTTAATTTTTTATTTGAAATTAGAAAAACGTAAAAAAATTATTAAAAATGCATGTTCA
66 TTTAAGATTTAATTTTTTATTTGAAATTAGAAAAACGTAAAAAAATTATTAAAAATGCATGTTCA
10491264 AAATGAGTGGGATAAATGCAGGTTTATCTGGTCAAAATTCTAAAAGAATATATCTAAAACTGAGA
131 AAATGAGTGGGATAAATGCAGGTTTATCTGGTCAAAATTCTAAAAGAATATATCTAAAACTGAGA
10491329 TTTTAAATTAAAATTATTAGACGTGCAATTTTTAGTAATTTATATAAATCTCTATTATTTTTTAT
196 TTTTAAATTAAAATTATTAGACGTGCAATTTTTAGTAATTTATATAAATCTCTATTATTTTTTAT
10491394 ATTTTT
261 ATTTTT
10491400 TATATTTTTC
Statistics
Matches: 265, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
265 255 0.96
266 10 0.04
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (266 bp):
AATAGATTATAAGAAATTTATAAATTTTTAGAAAATATTAAAAAATAATTAAAAATAATACAAAT
TTTAAGATTTAATTTTTTATTTGAAATTAGAAAAACGTAAAAAAATTATTAAAAATGCATGTTCA
AAATGAGTGGGATAAATGCAGGTTTATCTGGTCAAAATTCTAAAAGAATATATCTAAAACTGAGA
TTTTAAATTAAAATTATTAGACGTGCAATTTTTAGTAATTTATATAAATCTCTATTATTTTTTAT
ATTTTT
Found at i:10491398 original size:9 final size:9
Alignment explanation
Indices: 10491384--10491408 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10491374 AAATCTCTAT
10491384 TATTTTTTA
1 TATTTTTTA
10491393 TATTTTTTA
1 TATTTTTTA
10491402 TATTTTT
1 TATTTTT
10491409 CTATTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TATTTTTTA
Found at i:10498775 original size:29 final size:29
Alignment explanation
Indices: 10498733--10498793 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
10498723 TCATGAAGAT
10498733 GACGTCAATACTGACACATAAAACTGGAG
1 GACGTCAATACTGACACATAAAACTGGAG
10498762 GACGTCAATACTGACACATAAAACTGGAG
1 GACGTCAATACTGACACATAAAACTGGAG
10498791 GAC
1 GAC
10498794 TAACACTAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.16
Consensus pattern (29 bp):
GACGTCAATACTGACACATAAAACTGGAG
Found at i:10499303 original size:2 final size:2
Alignment explanation
Indices: 10499296--10499321 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10499286 TGCGGTGTTG
10499296 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
10499322 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:10503632 original size:27 final size:27
Alignment explanation
Indices: 10503593--10503653 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
10503583 CATTAATGTG
* * *
10503593 TTGGCAAGCTGGGGTTCGCTAGTTTGT
1 TTGGCGAGCTGGGGTTCGCCAATTTGT
*
10503620 TTGGCGAGTTGGGGTTCGCCAATTTGT
1 TTGGCGAGCTGGGGTTCGCCAATTTGT
*
10503647 GTGGCGA
1 TTGGCGA
10503654 ACTGAGTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.11, C:0.15, G:0.39, T:0.34
Consensus pattern (27 bp):
TTGGCGAGCTGGGGTTCGCCAATTTGT
Found at i:10505822 original size:20 final size:20
Alignment explanation
Indices: 10505797--10505836 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
10505787 TTTCTAAGTA
10505797 TATAACAATTATTGTTTTGC
1 TATAACAATTATTGTTTTGC
10505817 TATAACAATTATTGTTTTGC
1 TATAACAATTATTGTTTTGC
10505837 ATGATTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TATAACAATTATTGTTTTGC
Done.