Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 64 of 135
Found at i:25858100 original size:28 final size:30
Alignment explanation
Indices: 25858060--25858115 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
25858050 TATATAATTA
* **
25858060 ATTTTAATTTTTATGATA-TAAAAATAAAT
1 ATTTTAATATTTAAAATAGTAAAAATAAAT
25858089 ATTTT-ATATTTAAAATAGTAAAAATAA
1 ATTTTAATATTTAAAATAGTAAAAATAA
25858116 TTTAAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (30 bp):
ATTTTAATATTTAAAATAGTAAAAATAAAT
Found at i:25859924 original size:28 final size:30
Alignment explanation
Indices: 25859884--25859939 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
25859874 TATATAATTA
* **
25859884 ATTTTAATTTTTATGATA-TAAAAATAAAT
1 ATTTTAATATTTAAAATAGTAAAAATAAAT
25859913 ATTTT-ATATTTAAAATAGTAAAAATAA
1 ATTTTAATATTTAAAATAGTAAAAATAA
25859940 TTTAAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (30 bp):
ATTTTAATATTTAAAATAGTAAAAATAAAT
Found at i:25863297 original size:13 final size:13
Alignment explanation
Indices: 25863279--25863307 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
25863269 TGAGATTGTA
25863279 TTTCATTTCAAAT
1 TTTCATTTCAAAT
25863292 TTTCATTTCAAAT
1 TTTCATTTCAAAT
25863305 TTT
1 TTT
25863308 AGCATTGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTCATTTCAAAT
Found at i:25867221 original size:40 final size:40
Alignment explanation
Indices: 25867166--25867285 Score: 222
Period size: 40 Copynumber: 3.0 Consensus size: 40
25867156 AAAAATTAAT
*
25867166 TTGGTAGAAACCCATTCAAGCAAAACGAGAAAACGAAGAA
1 TTGGTAGAAACCCATTCAAGCAAAACGAGAAAATGAAGAA
*
25867206 TTGGTAGAAACCCATTCAAGCAAAACGAGAAAATTAAGAA
1 TTGGTAGAAACCCATTCAAGCAAAACGAGAAAATGAAGAA
25867246 TTGGTAGAAACCCATTCAAGCAAAACGAGAAAATGAAGAA
1 TTGGTAGAAACCCATTCAAGCAAAACGAGAAAATGAAGAA
25867286 AGAAAGTGAA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.50, C:0.16, G:0.19, T:0.15
Consensus pattern (40 bp):
TTGGTAGAAACCCATTCAAGCAAAACGAGAAAATGAAGAA
Found at i:25869790 original size:50 final size:54
Alignment explanation
Indices: 25869665--25869796 Score: 130
Period size: 50 Copynumber: 2.5 Consensus size: 54
25869655 GAGATTCCAT
* * *
25869665 GTAAGACCATGTCTAGGACATGGCATTGGCATCATTAAGATTATGAGAGGTCCCAT
1 GTAAGACCATTTCTAGGACATGGCATTGGCATCA-T-AGATGATGAGAGGTCCCAC
* * * * *
25869721 GTAAGGCTATGTT-TGGGACATGGCGTTGGCA-C-T-GA-GATGAGAGGTCCCCC
1 GTAAGACCAT-TTCTAGGACATGGCATTGGCATCATAGATGATGAGAGGTCCCAC
25869771 GTAAGACCATTTCTAGGACATGGCAT
1 GTAAGACCATTTCTAGGACATGGCAT
25869797 GAGCACCGAT
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
49 2 0.03
50 31 0.50
51 2 0.03
53 1 0.02
55 1 0.02
56 24 0.39
57 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (54 bp):
GTAAGACCATTTCTAGGACATGGCATTGGCATCATAGATGATGAGAGGTCCCAC
Found at i:25870130 original size:16 final size:15
Alignment explanation
Indices: 25870109--25870183 Score: 73
Period size: 16 Copynumber: 4.8 Consensus size: 15
25870099 TTTTTAAGTA
25870109 AGTAAGTAAGTAAATG
1 AGTAAG-AAGTAAATG
25870125 AGTAAG-AGTAAATG
1 AGTAAGAAGTAAATG
* *
25870139 AGTAAGAGAGTAAGTAC
1 AGTAAGA-AGTAAAT-G
25870156 AG-AAGGAAGTAAATG
1 AGTAA-GAAGTAAATG
25870171 AGTAAGAGAGTAA
1 AGTAAGA-AGTAA
25870184 GTATAGAAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
14 14 0.29
15 4 0.08
16 27 0.55
17 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.29, T:0.19
Consensus pattern (15 bp):
AGTAAGAAGTAAATG
Found at i:25870136 original size:14 final size:14
Alignment explanation
Indices: 25870117--25870146 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
25870107 TAAGTAAGTA
25870117 AGTAAATGAGTAAG
1 AGTAAATGAGTAAG
25870131 AGTAAATGAGTAAG
1 AGTAAATGAGTAAG
25870145 AG
1 AG
25870147 AGTAAGTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (14 bp):
AGTAAATGAGTAAG
Found at i:25870172 original size:32 final size:32
Alignment explanation
Indices: 25870131--25870200 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
25870121 AATGAGTAAG
25870131 AGTAAATGAGTAAGAGAGTAAGTACAGAAGGA
1 AGTAAATGAGTAAGAGAGTAAGTACAGAAGGA
*
25870163 AGTAAATGAGTAAGAGAGTAAGTATAGAAGGA
1 AGTAAATGAGTAAGAGAGTAAGTACAGAAGGA
25870195 AGTAAA
1 AGTAAA
25870201 GAGCATGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.51, C:0.01, G:0.30, T:0.17
Consensus pattern (32 bp):
AGTAAATGAGTAAGAGAGTAAGTACAGAAGGA
Found at i:25874241 original size:13 final size:14
Alignment explanation
Indices: 25874218--25874255 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
25874208 TTCTTTATAT
25874218 ATTATATTATTTCA
1 ATTATATTATTTCA
25874232 ATTA-ATTATTTCA
1 ATTATATTATTTCA
*
25874245 AATATCATTAT
1 ATTAT-ATTAT
25874256 GTTTATATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 4 0.19
15 5 0.24
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTATATTATTTCA
Found at i:25875669 original size:9 final size:9
Alignment explanation
Indices: 25875655--25875682 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
25875645 TTTTGTTACA
25875655 ACAATTAAT
1 ACAATTAAT
25875664 ACAATTAAT
1 ACAATTAAT
25875673 ACAATTAAT
1 ACAATTAAT
25875682 A
1 A
25875683 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:25876704 original size:23 final size:23
Alignment explanation
Indices: 25876678--25876721 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
25876668 AAATTTTTTA
25876678 TTTAATCATT-TAAAAATTACATT
1 TTTAAT-ATTGTAAAAATTACATT
*
25876701 TTTACTATTGTAAAAATTACA
1 TTTAATATTGTAAAAATTACA
25876722 ATTTAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (23 bp):
TTTAATATTGTAAAAATTACATT
Found at i:25881572 original size:161 final size:162
Alignment explanation
Indices: 25881296--25881620 Score: 643
Period size: 161 Copynumber: 2.0 Consensus size: 162
25881286 TTGTGTTGTT
25881296 CATAGTGTAAGCTAAGCCCCACAAAAAGAGCAAATAGTTTATTGGTAATGTCATCATAGTTTTAA
1 CATAGTGTAAGCTAAGCCCCACAAAAAGAGCAAATAGTTTATTGGTAATGTCATCATAGTTTTAA
25881361 CTAAAAGGTTTTTGAGGTTAGTTGTGAAGGTTGAGATGCCAACATCCCACAAACTGTCAACAAAG
66 CTAAAAGGTTTTTGAGGTTAGTTGTGAAGGTTGAGATGCCAACATCCCACAAACTGTCAACAAAG
25881426 GACAAAACTTCTCTCTCTTTCATACATCAAAA
131 GACAAAACTTCTCTCTCTTTCATACATCAAAA
25881458 CATAGTGTAA-CTAAGCCCCACAAAAAGAGCAAATAGTTTATTGGTAATGTCATCATAGTTTTAA
1 CATAGTGTAAGCTAAGCCCCACAAAAAGAGCAAATAGTTTATTGGTAATGTCATCATAGTTTTAA
25881522 CTAAAAGGTTTTTGAGGTTAGTTGTGAAGGTTGAGATGCCAACATCCCACAAACTGTCAACAAAG
66 CTAAAAGGTTTTTGAGGTTAGTTGTGAAGGTTGAGATGCCAACATCCCACAAACTGTCAACAAAG
25881587 GACAAAACTTCTCTCTCTTTCATACATCAAAA
131 GACAAAACTTCTCTCTCTTTCATACATCAAAA
25881619 CA
1 CA
25881621 CAGGTGTAGA
Statistics
Matches: 163, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
161 153 0.94
162 10 0.06
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (162 bp):
CATAGTGTAAGCTAAGCCCCACAAAAAGAGCAAATAGTTTATTGGTAATGTCATCATAGTTTTAA
CTAAAAGGTTTTTGAGGTTAGTTGTGAAGGTTGAGATGCCAACATCCCACAAACTGTCAACAAAG
GACAAAACTTCTCTCTCTTTCATACATCAAAA
Found at i:25884591 original size:21 final size:22
Alignment explanation
Indices: 25884573--25884620 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
25884563 TTTACTGTTG
*
25884573 TTTTGTTGTTG-TTTGCTGTCA
1 TTTTGATGTTGTTTTGCTGTCA
25884594 TTTTGATGTTGTTTTGCTGTCA
1 TTTTGATGTTGTTTTGCTGTCA
25884616 TTTTG
1 TTTTG
25884621 CTTTTATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.06, C:0.08, G:0.23, T:0.62
Consensus pattern (22 bp):
TTTTGATGTTGTTTTGCTGTCA
Found at i:25884619 original size:11 final size:11
Alignment explanation
Indices: 25884584--25884622 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
25884574 TTTGTTGTTG
25884584 TTTGCTGTCAT
1 TTTGCTGTCAT
* **
25884595 TTTGATGTTGT
1 TTTGCTGTCAT
25884606 TTTGCTGTCAT
1 TTTGCTGTCAT
25884617 TTTGCT
1 TTTGCT
25884623 TTTATATTGT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.08, C:0.13, G:0.21, T:0.59
Consensus pattern (11 bp):
TTTGCTGTCAT
Found at i:25893461 original size:12 final size:13
Alignment explanation
Indices: 25893446--25893477 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
25893436 TTAATAAAGC
25893446 TATTAATATTA-A
1 TATTAATATTACA
25893458 TATTAATATTACA
1 TATTAATATTACA
25893471 T-TTAATA
1 TATTAATA
25893478 GGTCCCCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 17 0.89
13 2 0.11
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
TATTAATATTACA
Found at i:25894249 original size:14 final size:15
Alignment explanation
Indices: 25894214--25894255 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
25894204 AAAAATGTTG
* *
25894214 AAAAAATAAGTGTTC
1 AAAAATTAAGTATTC
25894229 AAAAATTAAGTATT-
1 AAAAATTAAGTATTC
25894243 AAAAATTTAAGTA
1 AAAAA-TTAAGTA
25894256 ATGAATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.31
Consensus pattern (15 bp):
AAAAATTAAGTATTC
Found at i:25898979 original size:21 final size:21
Alignment explanation
Indices: 25898955--25898995 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
25898945 GAATTAAATG
25898955 AATATACATTTGAAGAATTAC
1 AATATACATTTGAAGAATTAC
* * *
25898976 AATATGCCTTTGATGAATTA
1 AATATACATTTGAAGAATTA
25898996 GCTATAGAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (21 bp):
AATATACATTTGAAGAATTAC
Found at i:25902129 original size:15 final size:15
Alignment explanation
Indices: 25902093--25902133 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
25902083 AATGCATGTA
25902093 AAAATGAAAAAATAT
1 AAAATGAAAAAATAT
25902108 AATAATGAAAAAA-AT
1 AA-AATGAAAAAATAT
25902123 ACAAATGAAAA
1 A-AAATGAAAA
25902134 GGAAAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.17
Consensus pattern (15 bp):
AAAATGAAAAAATAT
Found at i:25906919 original size:327 final size:330
Alignment explanation
Indices: 25906260--25906919 Score: 814
Period size: 327 Copynumber: 2.0 Consensus size: 330
25906250 TAATTGCCCA
* *
25906260 AAATGCCTTATGTTCAAGTTCAACAGGCAAATGGCAAGGTGTCCCATAGACGAGCTTGAAAGGCG
1 AAATGCCTTATGTTCAAGTTCAACAGGCAAAT-----GGTG-CCCATAGACGAGCTTAAAAGACG
** * *
25906325 ACATTCCAAATGGTGTCTTGAATGCAATGTGTTATGACCACAAAGCTTCATCCAATCTAGATGAC
60 ACATTCCAAATGGTGTCTTGAATGCAATACGATATGACCACAAAGCTTCATCCAATCAAGATGAC
** *
25906390 CAATCTTTGTGGGTCGAATTGACCACTTTCCCCAAAATCTGCTTAATTTCTCTATTCGAGACCTC
125 CAATCTTTGCAGGTCGAATTGACCACTTTCCCCAAAATCTACTTAATTTCTCTATTCGAGACCTC
* * * * * *
25906455 AGCTTGTCCATTTGTCTGGGGATGGTATGTCGTGGCAATTTCATGTTTAATCCCATATCTGTTCA
190 AACTTGTCCATTTGTATGGAGATGATATGTCGTGGCAATTTCATGTTTAACCCCATATCTATTCA
** * * *
25906520 AGACGATAAAAACTAATTTGTAGTCGAAATGGGAGCCTTCATCACTAATAATGGCACAAGGTGTA
255 AGACGATAAAAACTAATTTACAGTCGAAATGAGAGCCTTCATCACTAATAATAGCACAAGGAGTA
*
25906585 TCAAACCTAGT
320 CCAAACCTAGT
* *
25906596 AAATGCCTTATGTTCAAGTTCAACAGGCAAAT-G-G-CCATAGACGAGCTTAAAATATGACATTC
1 AAATGCCTTATGTTCAAGTTCAACAGGCAAATGGTGCCCATAGACGAGCTTAAAAGACGACATTC
* * *
25906658 CCAATGGTGTCTTGAATGCAATACGATATGCCCACAAGGCTTCATCCAATCAAGATGACCAATCT
66 CAAATGGTGTCTTGAATGCAATACGATATGACCACAAAGCTTCATCCAATCAAGATGACCAATCT
* * * * *
25906723 TTGCAGGTGGGATTGACCACTTTCTCCAAAATCTATTTAATTTCTCTATTTGAGACCTCAACTTG
131 TTGCAGGTCGAATTGACCACTTTCCCCAAAATCTACTTAATTTCTCTATTCGAGACCTCAACTTG
*
25906788 TCCATTTGTATGGAGATGATATG-C-TGTGCTAATTTTATGTTTAACCCCATATCTATTCAAG--
196 TCCATTTGTATGGAGATGATATGTCGTG-GC-AATTTCATGTTTAACCCCATATCTATTCAAGAC
** * * ** *
25906849 GTAGTAGCAACTAATTTACAGTTGAAATGAGAGCCTTCATCACTGATCAA-AGCATGATGAGTAC
259 G-A-TAAAAACTAATTTACAGTCGAAATGAGAGCCTTCATCACTAAT-AATAGCACAAGGAGTAC
25906913 CAAACCT
321 CAAACCT
25906920 GGTGAAAATA
Statistics
Matches: 280, Mismatches: 39, Indels: 19
0.83 0.12 0.06
Matches are distributed among these distances:
325 3 0.01
326 4 0.01
327 237 0.85
328 2 0.01
329 1 0.00
330 1 0.00
336 32 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (330 bp):
AAATGCCTTATGTTCAAGTTCAACAGGCAAATGGTGCCCATAGACGAGCTTAAAAGACGACATTC
CAAATGGTGTCTTGAATGCAATACGATATGACCACAAAGCTTCATCCAATCAAGATGACCAATCT
TTGCAGGTCGAATTGACCACTTTCCCCAAAATCTACTTAATTTCTCTATTCGAGACCTCAACTTG
TCCATTTGTATGGAGATGATATGTCGTGGCAATTTCATGTTTAACCCCATATCTATTCAAGACGA
TAAAAACTAATTTACAGTCGAAATGAGAGCCTTCATCACTAATAATAGCACAAGGAGTACCAAAC
CTAGT
Found at i:25910876 original size:24 final size:24
Alignment explanation
Indices: 25910847--25910896 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
25910837 GTTTTTCACG
25910847 ACACGAACATGGGCATTTAATGAC
1 ACACGAACATGGGCATTTAATGAC
25910871 ACACGAACATGGGCATTTAATGAC
1 ACACGAACATGGGCATTTAATGAC
25910895 AC
1 AC
25910897 CAAAAAGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (24 bp):
ACACGAACATGGGCATTTAATGAC
Found at i:25916401 original size:15 final size:15
Alignment explanation
Indices: 25916381--25916412 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25916371 GGGAGAGGCC
25916381 GTGGTAGAGGTGATG
1 GTGGTAGAGGTGATG
*
25916396 GTGGTAGAGGTGCTG
1 GTGGTAGAGGTGATG
25916411 GT
1 GT
25916413 CAGTGTTGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.53, T:0.28
Consensus pattern (15 bp):
GTGGTAGAGGTGATG
Found at i:25922552 original size:45 final size:46
Alignment explanation
Indices: 25922486--25922576 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 46
25922476 TTAAATTGGG
25922486 TTTAATTGTAAAACAAGGGAAAATCTAGAGTATTTATTTGACAAAT
1 TTTAATTGTAAAACAAGGGAAAATCTAGAGTATTTATTTGACAAAT
25922532 TTTAATTGT-AAACAAGGGAAAATCTAGAGTATTTATTTGACAAAT
1 TTTAATTGTAAAACAAGGGAAAATCTAGAGTATTTATTTGACAAAT
25922577 AAACCTTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 36 0.80
46 9 0.20
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (46 bp):
TTTAATTGTAAAACAAGGGAAAATCTAGAGTATTTATTTGACAAAT
Found at i:25929828 original size:29 final size:29
Alignment explanation
Indices: 25929795--25929958 Score: 156
Period size: 29 Copynumber: 5.6 Consensus size: 29
25929785 GTCGTATTCG
* **
25929795 TCCCTTTTCATATTCGATGGCCGAAACCA
1 TCCCTTTTCATATTCGATGGTCGTCACCA
*
25929824 TCCCTTTTCAGTAATCGATGGTCGTCACCA
1 TCCCTTTTCA-TATTCGATGGTCGTCACCA
*
25929854 TCCCTTTTTATAGTT-GATGGTCGTCACCA
1 TCCCTTTTCATA-TTCGATGGTCGTCACCA
* * * *
25929883 TACCTTTTCATAATT-GATAG-C-TGAAGCTA
1 TCCCTTTTCAT-ATTCGATGGTCGT-CA-CCA
*
25929912 TCCCTTTTCATATTTGATGGTCGTCACCA
1 TCCCTTTTCATATTCGATGGTCGTCACCA
*
25929941 TCCCTTTTCATAATCGAT
1 TCCCTTTTCATATTCGAT
25929959 ACCGAAGCTA
Statistics
Matches: 110, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.01
28 5 0.05
29 75 0.68
30 28 0.25
31 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (29 bp):
TCCCTTTTCATATTCGATGGTCGTCACCA
Found at i:25929932 original size:58 final size:57
Alignment explanation
Indices: 25929853--25929979 Score: 191
Period size: 58 Copynumber: 2.2 Consensus size: 57
25929843 GGTCGTCACC
* * *
25929853 ATCCCTTTTTATAGTTGATGGTCGTCACCATACCTTTTCATAATTGATAGCTGAAGCT
1 ATCCCTTTTCATAGTTGATGGTCGTCACCATACCTTTTCATAATCGATA-CCGAAGCT
* *
25929911 ATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATCGATACCGAAGCT
1 ATCCCTTTTCATAGTTGATGGTCGTCACCATACCTTTTCATAATCGATACCGAAGCT
*
25929968 ATCCTTTTTCAT
1 ATCCCTTTTCAT
25929980 GTTCAATGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
57 18 0.29
58 45 0.71
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (57 bp):
ATCCCTTTTCATAGTTGATGGTCGTCACCATACCTTTTCATAATCGATACCGAAGCT
Found at i:25934297 original size:14 final size:15
Alignment explanation
Indices: 25934278--25934321 Score: 65
Period size: 14 Copynumber: 3.1 Consensus size: 15
25934268 ACATCTTTCG
25934278 TTCTCTTTTCCT-CT
1 TTCTCTTTTCCTGCT
25934292 TTCTCTTTTCCTGCT
1 TTCTCTTTTCCTGCT
*
25934307 TT-TCTTTTCTTGCT
1 TTCTCTTTTCCTGCT
25934321 T
1 T
25934322 CATACCTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 24 0.86
15 4 0.14
ACGTcount: A:0.00, C:0.30, G:0.05, T:0.66
Consensus pattern (15 bp):
TTCTCTTTTCCTGCT
Found at i:25936497 original size:13 final size:13
Alignment explanation
Indices: 25936479--25936508 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25936469 ACTGCTTTCC
*
25936479 AAATCCCCATCCA
1 AAATCCACATCCA
25936492 AAATCCACATCCA
1 AAATCCACATCCA
25936505 AAAT
1 AAAT
25936509 TATTATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (13 bp):
AAATCCACATCCA
Found at i:25945338 original size:27 final size:27
Alignment explanation
Indices: 25945308--25945558 Score: 270
Period size: 27 Copynumber: 9.3 Consensus size: 27
25945298 GGGTACAATA
25945308 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
25945335 GTCATTCTACCTTATAGTGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
**
25945362 GTCATTTTATACTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25945389 ATCATTTTACCCTATCGGGGTATCTT-G
1 GTCATTTTACCCTATGGGGGTAT-TTCG
* * * *
25945416 GGCAGTTTACCCTATGGGGATATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * *
25945443 ATTATTTTACCCTATAGGGATATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25945470 GTCATTTTACCTTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25945497 GTTATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25945524 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
25945551 GTTATTTT
1 GTCATTTT
25945559 TACCTATTTT
Statistics
Matches: 182, Mismatches: 40, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
26 2 0.01
27 178 0.98
28 2 0.01
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:25949599 original size:17 final size:16
Alignment explanation
Indices: 25949553--25949600 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
25949543 TTCCTTAATC
*
25949553 TTTGATTTATTATTTTA
1 TTTGATTTTTTA-TTTA
*
25949570 TTTTATTTATTTATTTA
1 TTTGATTT-TTTATTTA
25949587 TTTGAATTTTTTAT
1 TTTG-ATTTTTTAT
25949601 CTGACTTGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (16 bp):
TTTGATTTTTTATTTA
Found at i:25959805 original size:30 final size:30
Alignment explanation
Indices: 25959769--25959830 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
25959759 AGATTTGACT
25959769 CACCGTTAAACATCTATAATTCACACCAAC
1 CACCGTTAAACATCTATAATTCACACCAAC
25959799 CACCGTTAAACATCTATAATTCACACCAAC
1 CACCGTTAAACATCTATAATTCACACCAAC
25959829 CA
1 CA
25959831 TCCATACTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.40, C:0.34, G:0.03, T:0.23
Consensus pattern (30 bp):
CACCGTTAAACATCTATAATTCACACCAAC
Found at i:25974843 original size:32 final size:32
Alignment explanation
Indices: 25974786--25974945 Score: 148
Period size: 32 Copynumber: 5.0 Consensus size: 32
25974776 AGCCATATGT
** *
25974786 ACAGTAATGTGATTGGCACAAAGCCATCAGTA
1 ACAGTAACATGATCGGCACAAAGCCATCAGTA
* * *
25974818 GA-AGTGATATGATCGGCACACAGCCATCAGTA
1 -ACAGTAACATGATCGGCACAAAGCCATCAGTA
25974850 ACAGTAACATGATCGGCACAAAGCCATCCA-TA
1 ACAGTAACATGATCGGCACAAAGCCAT-CAGTA
* * *
25974882 ACGGT-ACTATGACCGGCACAAAGCTATCAGTA
1 ACAGTAAC-ATGATCGGCACAAAGCCATCAGTA
* * *
25974914 ACGGT-ACTATGACCGACACAAAGCCATCAGTA
1 ACAGTAAC-ATGATCGGCACAAAGCCATCAGTA
25974946 GCATCACAAC
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
31 5 0.05
32 103 0.93
33 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (32 bp):
ACAGTAACATGATCGGCACAAAGCCATCAGTA
Found at i:25975019 original size:27 final size:27
Alignment explanation
Indices: 25974989--25975052 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
25974979 AGCAAAGCTG
*
25974989 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
25975016 CCAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
25975043 CCAGT-ACAGT
1 CCAGTAACAGT
25975053 ACTTCCTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 7 0.21
27 25 0.74
28 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:25975144 original size:24 final size:23
Alignment explanation
Indices: 25975117--25975185 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 23
25975107 CCATGCTCAG
25975117 AATCAGTCATTCAAATCACAGACA
1 AATCAGTCATTCAAA-CACAGACA
* *
25975141 AATCAGTCATACCAAACATAGACA
1 AATCAGTCAT-TCAAACACAGACA
* *
25975165 AATCAGTCATTTAACCACAGA
1 AATCAGTCATTCAAACACAGA
25975186 AAAAAGAATC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
23 7 0.18
24 27 0.71
25 4 0.11
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (23 bp):
AATCAGTCATTCAAACACAGACA
Found at i:25975272 original size:27 final size:27
Alignment explanation
Indices: 25975220--25975501 Score: 318
Period size: 27 Copynumber: 10.5 Consensus size: 27
25975210 GGCAAAAATA
25975220 GTCA-TTTACCC-ACCA-GGGCATTACG
1 GTCATTTTACCCTA-CAGGGGCATTACG
* * * *
25975245 GTTATTTTACCCTATAGGAGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
25975272 GTCATTTTACTCTATAGGGACATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
25975299 ATCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
25975326 ATCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
25975353 ATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
25975380 GTCATTTTACCTTACAGGTGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
25975407 ATCATTTTACCCTACAAGGGCATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
25975434 GTCATTTTATCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* **
25975461 GTCATTTTACCCTACAGGGGTATTATA
1 GTCATTTTACCCTACAGGGGCATTACG
*
25975488 GTTATTTTACCCTA
1 GTCATTTTACCCTA
25975502 TGGGGTTATT
Statistics
Matches: 220, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
25 3 0.01
26 8 0.04
27 209 0.95
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:25975585 original size:26 final size:26
Alignment explanation
Indices: 25975508--25975593 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 26
25975498 CCTATGGGGT
* *
25975508 TATTTCGAT-ATTCTA-CCGTACGAGTG
1 TATTTCGATCATT-TACCCATA-GAGGG
*
25975534 TATTTC-AGTCATTTTACCCATTGAGGG
1 TATTTCGA-TCA-TTTACCCATAGAGGG
25975561 TATTTCGATCATTTACCCATAGAGGG
1 TATTTCGATCATTTACCCATAGAGGG
25975587 TATTTCG
1 TATTTCG
25975594 GTCCAAATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
25 1 0.02
26 28 0.55
27 16 0.31
28 6 0.12
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (26 bp):
TATTTCGATCATTTACCCATAGAGGG
Found at i:25975590 original size:53 final size:53
Alignment explanation
Indices: 25975478--25975592 Score: 123
Period size: 53 Copynumber: 2.2 Consensus size: 53
25975468 TACCCTACAG
* *
25975478 GGGTATTAT-AGTTATTTTACCCTATGGGGTTATTTCGATATTCTACCGTACGA
1 GGGTATT-TCAGTCATTTTACCCTATGGGGTTATTTCGATATTCTACCATACGA
*
25975531 GTGTATTTCAGTCATTTTACCC-ATTGAGGG-TATTTCGATCATT-TACCCATA-GA
1 GGGTATTTCAGTCATTTTACCCTA-TG-GGGTTATTTCGAT-ATTCTA-CCATACGA
25975584 GGGTATTTC
1 GGGTATTTC
25975593 GGTCCAAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
52 2 0.04
53 41 0.77
54 10 0.19
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.41
Consensus pattern (53 bp):
GGGTATTTCAGTCATTTTACCCTATGGGGTTATTTCGATATTCTACCATACGA
Found at i:25981380 original size:21 final size:21
Alignment explanation
Indices: 25981338--25981380 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
25981328 CACTACTCTG
**
25981338 TTTCTAGTTGTACGACTGCAT
1 TTTCTAGTTGTACGACCACAT
25981359 TTTCTAGTTGGTA-GACCACAT
1 TTTCTAGTT-GTACGACCACAT
25981380 T
1 T
25981381 ATTGGTGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (21 bp):
TTTCTAGTTGTACGACCACAT
Found at i:25981770 original size:4 final size:4
Alignment explanation
Indices: 25981761--25981791 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
25981751 TGGAACTTTG
25981761 GTTT GTTT GTTT GTTT GTTT GTTT -TTT GTTT
1 GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTTT
25981792 TGAGACTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
GTTT
Found at i:25987125 original size:32 final size:32
Alignment explanation
Indices: 25987058--25987134 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
25987048 GTATAATCGG
*
25987058 TGGTGGTGTAAGGTGGTGGCCACGATGGTGAT
1 TGGTGGTGTAAGGTGGTGGCCACGACGGTGAT
* * * *
25987090 TGGTAGTGCAAGGTGGTGGCCACGGCGGTGGT
1 TGGTGGTGTAAGGTGGTGGCCACGACGGTGAT
25987122 TGGTGGTGTAAGG
1 TGGTGGTGTAAGG
25987135 GTCGACGTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.14, C:0.10, G:0.49, T:0.26
Consensus pattern (32 bp):
TGGTGGTGTAAGGTGGTGGCCACGACGGTGAT
Found at i:25989783 original size:32 final size:32
Alignment explanation
Indices: 25989698--25989868 Score: 152
Period size: 32 Copynumber: 5.4 Consensus size: 32
25989688 GAATGACTAT
* *
25989698 AAGCCATAAGT-ACATTAATATGATTC-GCACA
1 AAGCCATCAGTAACAGTAATATGA-TCGGCACA
** *
25989729 AAGCCATCAGTAGTAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
25989761 CAA-CCATCAGTAACGGTAATATGATCGACACA
1 -AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
25989793 AAACCATGAGTAACAGTAATATGA-CTGGCACA
1 AAGCCATCAGTAACAGTAATATGATC-GGCACA
** * *
25989825 AAGATATCAGTAACGGTAATATGATCGGTACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
25989857 AATCCATTAGTA
1 AAGCCATCAGTA
25989869 GCATAGCAGT
Statistics
Matches: 111, Mismatches: 23, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
31 15 0.14
32 93 0.84
33 3 0.03
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:25990067 original size:24 final size:24
Alignment explanation
Indices: 25990040--25990145 Score: 115
Period size: 24 Copynumber: 4.4 Consensus size: 24
25990030 CCATGCTCAG
25990040 AATCAATCATACAAATCACAGACA
1 AATCAATCATACAAATCACAGACA
* * *
25990064 AATCAGTTATACCAATCACAGACA
1 AATCAATCATACAAATCACAGACA
* **
25990088 AATCAGTCATTTAAATCACAGACA
1 AATCAATCATACAAATCACAGACA
** *
25990112 AATCAATCATTTACATCAC-GAACA
1 AATCAATCATACAAATCACAG-ACA
25990136 AATCAATCAT
1 AATCAATCAT
25990146 GTACACTCGA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
23 1 0.01
24 71 0.99
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.23
Consensus pattern (24 bp):
AATCAATCATACAAATCACAGACA
Found at i:25990224 original size:27 final size:27
Alignment explanation
Indices: 25990194--25990473 Score: 235
Period size: 27 Copynumber: 10.3 Consensus size: 27
25990184 GGCATTACGA
*
25990194 TCATTTTA-CCTTACAAGGGTATTTCGG
1 TCATTTTACCCTT-CGAGGGTATTTCGG
* * **
25990221 TCATTTAACCCTAT-GGGGGTATTAAGG
1 TCATTTTACCCT-TCGAGGGTATTTCGG
* * * * **
25990248 TCATTTTACCTTATGGGGGGTTTTTTAG
1 TCATTTTACCCT-TCGAGGGTATTTCGG
* **
25990276 TTATTTTACCCTTCGAGGGTATTTCTA
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
25990303 TCATTTTACCCTTCAAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGG
* * *
25990330 TTATTTTACCCTTCG-GGAATATTTTGG
1 TCATTTTACCCTTCGAGG-GTATTTCGG
*
25990357 TCATTTTACCCTTCGAGGGTATTTCAG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* * *
25990384 TAAATTTT-CCCTTCTAGGGTATTTCGA
1 T-CATTTTACCCTTCGAGGGTATTTCGG
* * *
25990411 TAATTTTACCCTTCGAAGGTATTTTGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
25990438 TAATTTTACCCTTCGAGGGTATTACGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
25990465 TCATTTTAC
1 TCATTTTAC
25990474 AAATATTGGG
Statistics
Matches: 203, Mismatches: 43, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
26 8 0.04
27 165 0.81
28 29 0.14
29 1 0.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGTATTTCGG
Found at i:25990396 original size:81 final size:80
Alignment explanation
Indices: 25990278--25990460 Score: 264
Period size: 81 Copynumber: 2.3 Consensus size: 80
25990268 TTTTTTAGTT
* *
25990278 ATTTTACCCTTCGAGGGTATTTCTATCATTTTACCCTTCAAGGGTATTTCGATTATTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCTATAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTT
*
25990343 CGGGAA-TATTTTGGTC
66 C--GAAGTATTTTGGTA
*
25990359 ATTTTACCCTTCGAGGGTATTTC-AGTAAATTTT-CCCTTCTAGGGTATTTCGATAATTTTACCC
1 ATTTTACCCTTCGAGGGTATTTCTA-T-AATTTTACCCTTCAAGGGTATTTCGATAATTTTACCC
25990422 TTCGAAGGTATTTTGGTA
64 TTCGAA-GTATTTTGGTA
25990440 ATTTTACCCTTCGAGGGTATT
1 ATTTTACCCTTCGAGGGTATT
25990461 ACGGTCATTT
Statistics
Matches: 94, Mismatches: 4, Indels: 8
0.89 0.04 0.08
Matches are distributed among these distances:
79 3 0.03
80 1 0.01
81 85 0.90
82 5 0.05
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.44
Consensus pattern (80 bp):
ATTTTACCCTTCGAGGGTATTTCTATAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTT
CGAAGTATTTTGGTA
Found at i:25992574 original size:15 final size:15
Alignment explanation
Indices: 25992556--25992588 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25992546 TTATATCATC
*
25992556 TCATAATCTAAGGTT
1 TCATAATCTAAAGTT
25992571 TCATAATCTAAAGTT
1 TCATAATCTAAAGTT
25992586 TCA
1 TCA
25992589 AGAATTGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (15 bp):
TCATAATCTAAAGTT
Found at i:25995447 original size:13 final size:13
Alignment explanation
Indices: 25995429--25995460 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
25995419 CGTGTGTGAC
25995429 ACATGGCCAGGCA
1 ACATGGCCAGGCA
*
25995442 ACATGGCCAGGCG
1 ACATGGCCAGGCA
25995455 ACATGG
1 ACATGG
25995461 TCTTGTGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.34, T:0.09
Consensus pattern (13 bp):
ACATGGCCAGGCA
Found at i:26005188 original size:17 final size:17
Alignment explanation
Indices: 26005166--26005201 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26005156 TCGTGTGCCA
*
26005166 GGCCGTGTGCCACACAT
1 GGCCGTGTGCAACACAT
*
26005183 GGCCGTGTGTAACACAT
1 GGCCGTGTGCAACACAT
26005200 GG
1 GG
26005202 TCTGGCCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.19
Consensus pattern (17 bp):
GGCCGTGTGCAACACAT
Found at i:26007527 original size:19 final size:19
Alignment explanation
Indices: 26007505--26007542 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26007495 TCAATCATCC
26007505 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
26007524 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
26007543 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:26013018 original size:3 final size:3
Alignment explanation
Indices: 26013006--26013087 Score: 80
Period size: 3 Copynumber: 28.3 Consensus size: 3
26012996 CTTTTTTAGC
* * * * *
26013006 TAT T-T TAT TAT TAT TAT TTT TAG TGT TAT TAT TAT AAT TA- TGT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
26013051 TAC TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26013088 TCTATATTCA
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
2 5 0.08
3 58 0.92
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:26013134 original size:28 final size:27
Alignment explanation
Indices: 26013103--26013197 Score: 77
Period size: 31 Copynumber: 3.4 Consensus size: 27
26013093 ATTCATTCAC
26013103 ATGCATTATTTTTATATAATATATATAT
1 ATGCATT-TTTTTATATAATATATATAT
** *
26013131 ATGCACTTTCTTTTTTATATAATATATGCAC
1 ATGCA---T-TTTTTTATATAATATATATAT
**
26013162 GCGCTATTTTTTTATAT-A-ATATATAT
1 ATGC-ATTTTTTTATATAATATATATAT
26013188 ATGCATTTTT
1 ATGCATTTTT
26013198 AGTACCCGTC
Statistics
Matches: 52, Mismatches: 10, Indels: 13
0.69 0.13 0.17
Matches are distributed among these distances:
25 6 0.12
26 7 0.13
27 1 0.02
28 15 0.29
29 1 0.02
31 20 0.38
32 2 0.04
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (27 bp):
ATGCATTTTTTTATATAATATATATAT
Found at i:26017742 original size:6 final size:6
Alignment explanation
Indices: 26017733--26017791 Score: 64
Period size: 6 Copynumber: 9.7 Consensus size: 6
26017723 AGATTTAAAA
* ** *
26017733 AAAATC AAAATC AAAATC AAAATC AAAAAC AATAAAA AAAATC AAATTC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AA-AATC AAAATC AAAATC
*
26017782 AAAAGC AAAA
1 AAAATC AAAA
26017792 AGGAGAAATC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 40 0.89
7 5 0.11
ACGTcount: A:0.71, C:0.14, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAATC
Found at i:26019591 original size:87 final size:87
Alignment explanation
Indices: 26019445--26019706 Score: 384
Period size: 87 Copynumber: 3.0 Consensus size: 87
26019435 TGAAGATTGG
* * *
26019445 AAACAAAGCCTTGCCTCCACCGATTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
1 AAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
26019510 CGTTAACAGCGAAGCAGATCGA
66 CGTTAACAGCGAAGCAGATCGA
* *
26019532 AAACAAAACCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTT-CTG
1 AAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT-
*
26019596 GAGTTAACAGCGAAGCAGATCGA
65 GCGTTAACAGCGAAGCAGATCGA
* *
26019619 AAGCAAAGCCTTGCCTCCATCGGATGCAGTGGAGCTGGTTAAAGATAGCAGATCTT-CCTCTCCT
1 AAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT-TCCT
** * *
26019683 GCGTCGACAGTGAAGTAGATCGA
65 GCGTTAACAGCGAAGCAGATCGA
26019706 A
1 A
26019707 GATTACAAGT
Statistics
Matches: 157, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
86 5 0.03
87 150 0.96
88 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (87 bp):
AAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
CGTTAACAGCGAAGCAGATCGA
Found at i:26019942 original size:44 final size:45
Alignment explanation
Indices: 26019885--26020010 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 45
26019875 ATCGCATCGG
*
26019885 GTCTTATCTCCCTGAAGTTCCAGTGGAGCAGA-CTG-AGAA-AACAA
1 GTCTTATCTCCCTGAAGTTACAGTGGAGCAGATC-GAAGAAGAA-AA
* ** * *
26019929 GTCTTATCCCCCTGAAGTTGTAGTGGGGCAGATCGAAGAAGTAAA
1 GTCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAAGAAAA
* *
26019974 -TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG
1 GTCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG
26020011 CCGATAATCC
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
44 60 0.88
45 7 0.10
46 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAAGAAAA
Found at i:26020042 original size:44 final size:42
Alignment explanation
Indices: 26019886--26020093 Score: 116
Period size: 44 Copynumber: 4.7 Consensus size: 42
26019876 TCGCATCGGG
* * * * *
26019886 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTG-AGAAAACAA
1 TCTTATCT-TCTGAAGTTGCAGTGGAGCAGATTGAAG-AGATAA
** * * *
26019929 GTCTTATCCCCCTGAAGTTGTAGTGGGGCAGATCGAAGA-AGTAAA
1 -TCTTAT-CTTCTGAAGTTGCAGTGGAGCAGATTGAAGAGA-T-AA
* * * *
26019974 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCGATAA
1 TCTTATCT-TCTGAAGTTGCAGTGGAGCAGATTGAAG-AGATAA
* * * *
26020018 TCCTATCTTGCTGAAGTTGTAGTGGAGCGGATTAAAGTA-ATAGA
1 TCTTATCTT-CTGAAGTTGCAGTGGAGCAGATTGAAG-AGATA-A
*
26020062 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 TCTTATCT-TCTGAAGTTGCAGTGGAGCAGAT
26020094 CGCATCAAGT
Statistics
Matches: 127, Mismatches: 27, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
43 5 0.04
44 114 0.90
45 7 0.06
46 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (42 bp):
TCTTATCTTCTGAAGTTGCAGTGGAGCAGATTGAAGAGATAA
Found at i:26022754 original size:48 final size:47
Alignment explanation
Indices: 26022641--26022764 Score: 133
Period size: 47 Copynumber: 2.6 Consensus size: 47
26022631 ATATGTTATT
* * * * *
26022641 ACACAAGGGTGACACGGACTGTGTGCAGGCCACCGATATTCTGTTTG
1 ACACAAGGGTGGCACGGACTGTGTGCAGGACACCAATACTCTGTTAG
* * *
26022688 ACACAAGGATGGTACGGACTGTGTGTAGGACACCAATAACT-TGTTAAG
1 ACACAAGGGTGGCACGGACTGTGTGCAGGACACCAAT-ACTCTGTT-AG
* *
26022736 ATACAAGGGTGGCACGGACTATGTGCAGG
1 ACACAAGGGTGGCACGGACTGTGTGCAGG
26022765 CCATCTAGAA
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
47 35 0.56
48 27 0.44
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (47 bp):
ACACAAGGGTGGCACGGACTGTGTGCAGGACACCAATACTCTGTTAG
Found at i:26022780 original size:48 final size:46
Alignment explanation
Indices: 26022641--26022816 Score: 138
Period size: 48 Copynumber: 3.7 Consensus size: 46
26022631 ATATGTTATT
* * *
26022641 ACACAAGGGTGACACGGACTGTGTGCAGGCCACCGATATTCTGTT-TG
1 ACACAAGGGTGGCACGGACTGTGTGCAGGCCACAGA-ATT-TGTTAAG
* * * * * *
26022688 ACACAAGGATGGTACGGACTGTGTGTAGGACACCAATAACTTGTTAAG
1 ACACAAGGGTGGCACGGACTGTGTGCAGGCCA-C-AGAATTTGTTAAG
* * **
26022736 ATACAAGGGTGGCACGGACTATGTGCAGGCCATCTAGAATTTGTTATT
1 ACACAAGGGTGGCACGGACTGTGTGCAGGCCA-C-AGAATTTGTTAAG
* * * *
26022784 ACACAAAGGTGGTATGAACTGTGTGCAGGCCAC
1 ACACAAGGGTGGCACGGACTGTGTGCAGGCCAC
26022817 CGAGAAATCT
Statistics
Matches: 99, Mismatches: 27, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
47 32 0.32
48 66 0.67
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
ACACAAGGGTGGCACGGACTGTGTGCAGGCCACAGAATTTGTTAAG
Found at i:26029755 original size:48 final size:48
Alignment explanation
Indices: 26029682--26029886 Score: 200
Period size: 48 Copynumber: 4.3 Consensus size: 48
26029672 TGTTATGCGT
* * * *
26029682 ACCGATAATCTGTTCTGAGAAAAGGGTGGCACGGATTGTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * *
26029730 ACCGATATTCTGTTGTGACACAAGGGTAGCACGGACTGTGTGCAGGAC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * ** * *
26029778 ACCAATAA-CTTGTTAAGATGCAAGGGTGGCACAGACTATGTGCAGG--
1 ACCGATAATC-TGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * *
26029824 ACCGAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
*
26029872 ACCGAGAAATCTGTT
1 ACCGA-TAATCTGTT
26029887 TTTATTCCGA
Statistics
Matches: 125, Mismatches: 27, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
46 34 0.27
47 2 0.02
48 81 0.65
49 8 0.06
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
ACCGATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
Found at i:26057953 original size:16 final size:16
Alignment explanation
Indices: 26057932--26057972 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
26057922 AAAGTTTCTC
26057932 CAAATTTTTAAGTTTT
1 CAAATTTTTAAGTTTT
26057948 CAAA-TTTTAAGTTTT
1 CAAATTTTTAAGTTTT
*
26057963 AAAATATTTT
1 CAAAT-TTTT
26057973 CCTTTTCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 14 0.64
16 4 0.18
17 4 0.18
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (16 bp):
CAAATTTTTAAGTTTT
Found at i:26061351 original size:15 final size:15
Alignment explanation
Indices: 26061327--26061357 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26061317 ACATCTACCG
*
26061327 AAATAGATGAATTAC
1 AAATAAATGAATTAC
26061342 AAATAAATGAATTAC
1 AAATAAATGAATTAC
26061357 A
1 A
26061358 TACAACATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.10, T:0.26
Consensus pattern (15 bp):
AAATAAATGAATTAC
Found at i:26065037 original size:27 final size:26
Alignment explanation
Indices: 26065007--26065071 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
26064997 TTTAACAGTA
*
26065007 ACAGTACAGTGTGGGCCTTAGCCCAAT
1 ACAGTACAGTGT-GGCCTAAGCCCAAT
* *
26065034 ACAGAAACAGTGTGGCCTAAGCCCGAT
1 ACAG-TACAGTGTGGCCTAAGCCCAAT
*
26065061 ATAGTATCAGT
1 ACAGTA-CAGT
26065072 ATGGTGCAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
26 1 0.03
27 23 0.74
28 7 0.23
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (26 bp):
ACAGTACAGTGTGGCCTAAGCCCAAT
Found at i:26065269 original size:22 final size:22
Alignment explanation
Indices: 26065239--26065290 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
26065229 TGGCTAATAG
* * *
26065239 AGCCGTAAACAGGATAGCTATA
1 AGCCATAAACAGAATAGCTACA
* *
26065261 AGCTATAAACAGAATGGCTACA
1 AGCCATAAACAGAATAGCTACA
26065283 AGCCATAA
1 AGCCATAA
26065291 GTATAGTAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.17
Consensus pattern (22 bp):
AGCCATAAACAGAATAGCTACA
Found at i:26065350 original size:32 final size:32
Alignment explanation
Indices: 26065302--26065515 Score: 193
Period size: 32 Copynumber: 6.7 Consensus size: 32
26065292 TATAGTAATG
* *
26065302 TGATTGGCACAAAGCCATCAGTAGCAGTGATA
1 TGATCGGCACAAAGCCATCAGTAACAGTGATA
* * * *
26065334 TGATCGGCACATAGCCATCAGTAACGGTAACA
1 TGATCGGCACAAAGCCATCAGTAACAGTGATA
* *
26065366 TGATCGGTACAAAGCCATCAGTAGCAGTGATA
1 TGATCGGCACAAAGCCATCAGTAACAGTGATA
* *
26065398 TGATCGG-ACACAA-CCATCAGTAACAGCGAAA
1 TGATCGGCACA-AAGCCATCAGTAACAGTGATA
* * * * *
26065429 TAATCAGCACACAGCCATCGGTAAC-GATAATA
1 TGATCGGCACAAAGCCATCAGTAACAG-TGATA
* * **
26065461 CGATCGGTACAAAGCCATCAGTAATGGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAACAGTGA-TA
*
26065493 TGACCGGCACAAAGCCATCAGTA
1 TGATCGGCACAAAGCCATCAGTA
26065516 GCATCGCAGC
Statistics
Matches: 144, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
31 26 0.18
32 117 0.81
33 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (32 bp):
TGATCGGCACAAAGCCATCAGTAACAGTGATA
Found at i:26065495 original size:95 final size:96
Alignment explanation
Indices: 26065307--26065515 Score: 253
Period size: 95 Copynumber: 2.2 Consensus size: 96
26065297 TAATGTGATT
* * * * * * * *
26065307 GGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACATAGCCATCAGTAACGGTAACATGATCG
1 GGCACAAAGCCATCAGTAACAGCGAAATAATCAGCACACAGCCATCAGTAACGATAACACGATCG
* *
26065372 GTACAAAGCCATCAGTAGCAGTGATATGATC
66 GTACAAAGCCATCAGTAACAGTGATATGACC
* *
26065403 GG-ACACAA-CCATCAGTAACAGCGAAATAATCAGCACACAGCCATCGGTAACGATAATACGATC
1 GGCACA-AAGCCATCAGTAACAGCGAAATAATCAGCACACAGCCATCAGTAACGATAACACGATC
**
26065466 GGTACAAAGCCATCAGTAATGGT-ACTATGACC
65 GGTACAAAGCCATCAGTAACAGTGA-TATGACC
26065498 GGCACAAAGCCATCAGTA
1 GGCACAAAGCCATCAGTA
26065516 GCATCGCAGC
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
94 1 0.01
95 78 0.82
96 16 0.17
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (96 bp):
GGCACAAAGCCATCAGTAACAGCGAAATAATCAGCACACAGCCATCAGTAACGATAACACGATCG
GTACAAAGCCATCAGTAACAGTGATATGACC
Found at i:26065570 original size:26 final size:26
Alignment explanation
Indices: 26065518--26065571 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
26065508 CATCAGTAGC
* *
26065518 ATCGCAGCAAAGCTGCCAGCAACAGT
1 ATCGCAACAAAGCTGCAAGCAACAGT
* *
26065544 ATCGCAACAAAGCTGCAAGTAAGAGT
1 ATCGCAACAAAGCTGCAAGCAACAGT
26065570 AT
1 AT
26065572 ACGTGGCCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (26 bp):
ATCGCAACAAAGCTGCAAGCAACAGT
Found at i:26065719 original size:24 final size:23
Alignment explanation
Indices: 26065692--26065744 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
26065682 TTAGAATTAC
26065692 TCATTCAAATCACAGAAAAATCAG
1 TCATTCAAA-CACAGAAAAATCAG
* * *
26065716 TCATACCAAACATAGACAAATCAG
1 TCAT-TCAAACACAGAAAAATCAG
26065740 TCATT
1 TCATT
26065745 TAACCATAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.47, C:0.23, G:0.08, T:0.23
Consensus pattern (23 bp):
TCATTCAAACACAGAAAAATCAG
Found at i:26065845 original size:27 final size:26
Alignment explanation
Indices: 26065802--26066059 Score: 264
Period size: 27 Copynumber: 9.6 Consensus size: 26
26065792 AATTGCCCAC
* *
26065802 CAGGGCATTATGGTCATTTTACCCTA
1 CAGGGTATTACGGTCATTTTACCCTA
**
26065828 CAGGGATATTACAATCATTTTACCCTA
1 CAGGG-TATTACGGTCATTTTACCCTA
* *
26065855 TAGGGGTATTACGGTTATTTTACCCTA
1 CA-GGGTATTACGGTCATTTTACCCTA
*
26065882 CAGGGCCATTACGGTCATTTTACCCTA
1 CAGGG-TATTACGGTCATTTTACCCTA
* *
26065909 CATAGGTATTATGGTCATTTTACCCTA
1 CA-GGGTATTACGGTCATTTTACCCTA
*
26065936 TAGGGGTATTACGGTCATTTTACCCTA
1 CA-GGGTATTACGGTCATTTTACCCTA
* * * *
26065963 CAGGGGCATTATGGTTATTTTAACCTA
1 CA-GGGTATTACGGTCATTTTACCCTA
* *
26065990 CAGAGGTATTACGATCATTTTACCTTA
1 CAG-GGTATTACGGTCATTTTACCCTA
* *
26066017 CATGGGCATTACGATCATTTTACCCTA
1 CA-GGGTATTACGGTCATTTTACCCTA
*
26066044 CAGGGATATTATGGTC
1 CAGGG-TATTACGGTC
26066060 GGTATTACAG
Statistics
Matches: 191, Mismatches: 34, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
26 12 0.06
27 173 0.91
28 6 0.03
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (26 bp):
CAGGGTATTACGGTCATTTTACCCTA
Found at i:26065881 original size:54 final size:53
Alignment explanation
Indices: 26065808--26066314 Score: 456
Period size: 54 Copynumber: 9.2 Consensus size: 53
26065798 CCACCAGGGC
* * *
26065808 ATTATGGTCATTTTACCCTACAGGGATATTACAATCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAGGG-TATTACGATCATTTTACCCTACAGGGGT
* * * **
26065862 ATTACGGTTATTTTACCCTACAGGGCCATTACGGTCATTTTACCCTACATAGGT
1 ATTACGGTCATTTTACCCTACAGGG-TATTACGATCATTTTACCCTACAGGGGT
* * * *
26065916 ATTATGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAGGGGT
* * * * * *
26065970 ATTATGGTTATTTTAACCTACAGAGGTATTACGATCATTTTACCTTACATGGGC
1 ATTACGGTCATTTTACCCTACAG-GGTATTACGATCATTTTACCCTACAGGGGT
* * *
26066024 ATTACGATCATTTTACCCTACAGGGATATTATGGTCGGTATTACAGTTATTTTACCTTACATGGG
1 ATTACGGTCATTTTACCCTACAGGG-TATTA----C-G-A-T-C----ATTTTACCCTACAGGGG
26066089 T
53 T
* * * * **
26066090 ATTACGATCATTTTAACCTACAGGGGTATTACGGTTATTTTACCCTACAGGGCC
1 ATTACGGTCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAGGGGT
* * * *
26066144 ATTACGGTCATTTTACCCTACATAGGTATTATGGTCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAGGGGT
* * * * *
26066198 ATTACGGTCATTTTACCCTACAGGGGCATTATGGTTATTTTAACCTACAGGGGT
1 ATTACGGTCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAGGGGT
* * * **
26066252 ATTACGATCATTTTACCTTACATGGGCATTACGATCATTTTACCCTACAGGGAC
1 ATTACGGTCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAGGGGT
26066306 ATTACGGTC
1 ATTACGGTC
26066315 GGTATTACGG
Statistics
Matches: 378, Mismatches: 59, Indels: 32
0.81 0.13 0.07
Matches are distributed among these distances:
53 3 0.01
54 318 0.84
55 3 0.01
58 1 0.00
59 2 0.01
60 1 0.00
61 2 0.01
62 2 0.01
66 43 0.11
67 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (53 bp):
ATTACGGTCATTTTACCCTACAGGGTATTACGATCATTTTACCCTACAGGGGT
Found at i:26066090 original size:27 final size:27
Alignment explanation
Indices: 26066060--26066314 Score: 294
Period size: 27 Copynumber: 9.4 Consensus size: 27
26066050 TATTATGGTC
* * * *
26066060 GGTATTACAGTTATTTTACCTTACATG
1 GGTATTACGGTCATTTTACCCTACAGG
* *
26066087 GGTATTACGATCATTTTAACCTACAGG
1 GGTATTACGGTCATTTTACCCTACAGG
*
26066114 GGTATTACGGTTATTTTACCCTACAGG
1 GGTATTACGGTCATTTTACCCTACAGG
** **
26066141 GCCATTACGGTCATTTTACCCTACATA
1 GGTATTACGGTCATTTTACCCTACAGG
* *
26066168 GGTATTATGGTCATTTTACCCTATAGG
1 GGTATTACGGTCATTTTACCCTACAGG
26066195 GGTATTACGGTCATTTTACCCTACAGG
1 GGTATTACGGTCATTTTACCCTACAGG
* * * *
26066222 GGCATTATGGTTATTTTAACCTACAGG
1 GGTATTACGGTCATTTTACCCTACAGG
* * *
26066249 GGTATTACGATCATTTTACCTTACATG
1 GGTATTACGGTCATTTTACCCTACAGG
* *
26066276 GGCATTACGATCATTTTACCCTACAGG
1 GGTATTACGGTCATTTTACCCTACAGG
**
26066303 GACATTACGGTC
1 GGTATTACGGTC
26066315 GGTATTACGG
Statistics
Matches: 190, Mismatches: 38, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 190 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTACGGTCATTTTACCCTACAGG
Found at i:26066155 original size:120 final size:120
Alignment explanation
Indices: 26065940--26066179 Score: 322
Period size: 120 Copynumber: 2.0 Consensus size: 120
26065930 ACCCTATAGG
* * * *
26065940 GGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTTATTTTAACCTACAGAGGTATTACGAT
1 GGTATTACAGTCATTTTACCCTACAGGGGCATTACGATCATTTTAACCTACAGAGGTATTACGAT
* *
26066005 CATTTTACCTTACATGGGCATTACGATCATTTTACCCTACA-GGGATATTATGGTC
66 CATTTTACCCTACATGGGCATTACGATCATTTTACCCTACATAGG-TATTATGGTC
* * * * * *
26066060 GGTATTACAGTTATTTTACCTTACATGGGTATTACGATCATTTTAACCTACAGGGGTATTACGGT
1 GGTATTACAGTCATTTTACCCTACAGGGGCATTACGATCATTTTAACCTACAGAGGTATTACGAT
* *
26066125 TATTTTACCCTACA-GGGCCATTACGGTCATTTTACCCTACATAGGTATTATGGTC
66 CATTTTACCCTACATGGG-CATTACGATCATTTTACCCTACATAGGTATTATGGTC
26066180 ATTTTACCCT
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
119 3 0.03
120 99 0.95
121 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (120 bp):
GGTATTACAGTCATTTTACCCTACAGGGGCATTACGATCATTTTAACCTACAGAGGTATTACGAT
CATTTTACCCTACATGGGCATTACGATCATTTTACCCTACATAGGTATTATGGTC
Found at i:26066268 original size:255 final size:255
Alignment explanation
Indices: 26065817--26066391 Score: 1062
Period size: 255 Copynumber: 2.3 Consensus size: 255
26065807 CATTATGGTC
* * *
26065817 ATTTTACCCTACA-GGGATATTACAATCATTTTACCCTATAGGGGTATTACGGTTATTTTACCCT
1 ATTTTACCTTACATGGG-TATTACGATCATTTTACCCTACAGGGGTATTACGGTTATTTTACCCT
26065881 ACAGGGCCATTACGGTCATTTTACCCTACATAGGTATTATGGTCATTTTACCCTATAGGGGTATT
65 ACAGGGCCATTACGGTCATTTTACCCTACATAGGTATTATGGTCATTTTACCCTATAGGGGTATT
26065946 ACGGTCATTTTACCCTACAGGGGCATTATGGTTATTTTAACCTACAGAGGTATTACGATCATTTT
130 ACGGTCATTTTACCCTACAGGGGCATTATGGTTATTTTAACCTACAGAGGTATTACGATCATTTT
* *
26066011 ACCTTACATGGGCATTACGATCATTTTACCCTACAGGGATATTATGGTCGGTATTACAGTT
195 ACCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGTCGGTATTACAGTT
*
26066072 ATTTTACCTTACATGGGTATTACGATCATTTTAACCTACAGGGGTATTACGGTTATTTTACCCTA
1 ATTTTACCTTACATGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTTATTTTACCCTA
26066137 CAGGGCCATTACGGTCATTTTACCCTACATAGGTATTATGGTCATTTTACCCTATAGGGGTATTA
66 CAGGGCCATTACGGTCATTTTACCCTACATAGGTATTATGGTCATTTTACCCTATAGGGGTATTA
*
26066202 CGGTCATTTTACCCTACAGGGGCATTATGGTTATTTTAACCTACAGGGGTATTACGATCATTTTA
131 CGGTCATTTTACCCTACAGGGGCATTATGGTTATTTTAACCTACAGAGGTATTACGATCATTTTA
*
26066267 CCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGTCGGTATTACGGTT
196 CCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGTCGGTATTACAGTT
26066327 ATTTTACCTTACATGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTTATTTTACCCTA
1 ATTTTACCTTACATGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTTATTTTACCCTA
26066392 TGGGGGTATT
Statistics
Matches: 310, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
255 307 0.99
256 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (255 bp):
ATTTTACCTTACATGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTTATTTTACCCTA
CAGGGCCATTACGGTCATTTTACCCTACATAGGTATTATGGTCATTTTACCCTATAGGGGTATTA
CGGTCATTTTACCCTACAGGGGCATTATGGTTATTTTAACCTACAGAGGTATTACGATCATTTTA
CCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGTCGGTATTACAGTT
Found at i:26066324 original size:174 final size:173
Alignment explanation
Indices: 26066144--26066469 Score: 433
Period size: 174 Copynumber: 1.9 Consensus size: 173
26066134 CTACAGGGCC
* * *
26066144 ATTACGGTCATTTTACCCTACATAGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTCAT
1 ATTACGGTCATTTTACCCTACATAGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCAT
* *
26066209 TTTACCCTACAGGGGCATTAT-GGTTATTTTAACC-TACAGGGGTATTACGATCATTTTACCTTA
66 TTTACCCTACAGGGGCATT-TCGG-TATTCT-ACCATACAGGGGTATTACGATCATTTTACCCTA
*
26066272 -CATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGTCGGT
128 TCA-GGGCATTACAATCATTTTACCCTACAGGGACATTACGGTCGGT
* * * *
26066318 ATTACGGTTATTTTACCTTACATGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTTAT
1 ATTACGGTCATTTTACCCTACATAGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCAT
** * * * * *
26066383 TTTACCCTATGGGGGTATTTCGGTATTCTACCATACGGGGGTATTTCGGTCATTTTACCCTATGA
66 TTTACCCTACAGGGGCATTTCGGTATTCTACCATACAGGGGTATTACGATCATTTTACCCTATCA
*
26066448 GGGCATTTCAATCATTTTACCC
131 GGGCATTACAATCATTTTACCC
26066470 ATCGAGGGTA
Statistics
Matches: 131, Mismatches: 18, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
172 3 0.02
173 51 0.39
174 77 0.59
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (173 bp):
ATTACGGTCATTTTACCCTACATAGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCAT
TTTACCCTACAGGGGCATTTCGGTATTCTACCATACAGGGGTATTACGATCATTTTACCCTATCA
GGGCATTACAATCATTTTACCCTACAGGGACATTACGGTCGGT
Found at i:26066349 original size:27 final size:27
Alignment explanation
Indices: 26066315--26066444 Score: 145
Period size: 27 Copynumber: 4.9 Consensus size: 27
26066305 CATTACGGTC
* *
26066315 GGTATTACGGTTATTTTACCTTACATG
1 GGTATTACGGTTATTTTACCCTACAGG
* *
26066342 GGTATTACGATCATTTTACCCTACAGG
1 GGTATTACGGTTATTTTACCCTACAGG
**
26066369 GGTATTACGGTTATTTTACCCTATGGG
1 GGTATTACGGTTATTTTACCCTACAGG
* * * *
26066396 GGTATTTCGG-TATTCTACCATACGGG
1 GGTATTACGGTTATTTTACCCTACAGG
* *
26066422 GGTATTTCGGTCATTTTACCCTA
1 GGTATTACGGTTATTTTACCCTA
26066445 TGAGGGCATT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.26
27 64 0.74
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (27 bp):
GGTATTACGGTTATTTTACCCTACAGG
Found at i:26066355 original size:66 final size:66
Alignment explanation
Indices: 26066249--26066379 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 66
26066239 AACCTACAGG
26066249 GGTATTACGATCATTTTACCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGT
1 GGTATTACGATCATTTTACCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGT
26066314 C
66 C
* * * **
26066315 GGTATTACGGTTATTTTACCTTACATGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGT
1 GGTATTACGATCATTTTACCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGT
26066380 TATTTTACCC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (66 bp):
GGTATTACGATCATTTTACCTTACATGGGCATTACGATCATTTTACCCTACAGGGACATTACGGT
C
Found at i:26066399 original size:54 final size:54
Alignment explanation
Indices: 26066315--26066523 Score: 187
Period size: 54 Copynumber: 3.9 Consensus size: 54
26066305 CATTACGGTC
* * *
26066315 GGTATTACGGTTATTTTACCTTA-CATGGGTATTACGATCATTTTACCCTACAGG
1 GGTATTACGGTTATTTTACCCTATGA-GGGTATTTCGATCATTTTACCCTACAGG
* * * * *
26066369 GGTATTACGGTTATTTTACCCTATGGGGGTATTTCGGT-ATTCTACCATACGGG
1 GGTATTACGGTTATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTACAGG
* * * *
26066422 GGTATTTCGGTCATTTTACCCTATGAGGGCATTTCAATCATTTTACCC-ATC-GAG
1 GGTATTACGGTTATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTA-CAG-G
* * * *
26066476 GGTATTTCAGTCATTTTACAC-ATCGAGGGTATTTC-ATTCATTTTACCC
1 GGTATTACGGTTATTTTACCCTAT-GAGGGTATTTCGA-TCATTTTACCC
26066524 ATCGAAGTTA
Statistics
Matches: 130, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
53 49 0.38
54 81 0.62
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTATTACGGTTATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTACAGG
Found at i:26066409 original size:26 final size:27
Alignment explanation
Indices: 26066341--26066523 Score: 156
Period size: 27 Copynumber: 6.8 Consensus size: 27
26066331 TACCTTACAT
* * **
26066341 GGGTATTACGATCATTTTACCCTACAG
1 GGGTATTTCGGTCATTTTACCCTATGG
* *
26066368 GGGTATTACGGTTATTTTACCCTATGG
1 GGGTATTTCGGTCATTTTACCCTATGG
* * *
26066395 GGGTATTTCGGT-ATTCTACCATACGG
1 GGGTATTTCGGTCATTTTACCCTATGG
*
26066421 GGGTATTTCGGTCATTTTACCCTATGA
1 GGGTATTTCGGTCATTTTACCCTATGG
* ** *
26066448 GGGCATTTCAATCATTTTACCC-ATCGA
1 GGGTATTTCGGTCATTTTACCCTAT-GG
* * *
26066475 GGGTATTTCAGTCATTTTACAC-ATCGA
1 GGGTATTTCGGTCATTTTACCCTAT-GG
**
26066502 GGGTATTTCATTCATTTTACCC
1 GGGTATTTCGGTCATTTTACCC
26066524 ATCGAAGTTA
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
26 25 0.19
27 109 0.81
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTATGG
Found at i:26066442 original size:53 final size:54
Alignment explanation
Indices: 26066351--26066522 Score: 161
Period size: 53 Copynumber: 3.2 Consensus size: 54
26066341 GGGTATTACG
* * * * * * * *
26066351 ATCATTTTACCCTACAGGGGTATTACGGTTATTTTACCCTATGGGGGTATTTCG
1 ATCATTCTACCATACGGGGGTATTTCGGTCATTTTACCCTATGAGGGCATTTCA
*
26066405 GT-ATTCTACCATACGGGGGTATTTCGGTCATTTTACCCTATGAGGGCATTTCA
1 ATCATTCTACCATACGGGGGTATTTCGGTCATTTTACCCTATGAGGGCATTTCA
* * * * *
26066458 ATCATTTTACCCAT-CGAGGGTATTTCAGTCATTTTACAC-ATCGAGGGTATTTCA
1 ATCATTCTA-CCATACGGGGGTATTTCGGTCATTTTACCCTAT-GAGGGCATTTCA
* *
26066512 TTCATTTTACC
1 ATCATTCTACC
26066523 CATCGAAGTT
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
53 48 0.48
54 47 0.47
55 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (54 bp):
ATCATTCTACCATACGGGGGTATTTCGGTCATTTTACCCTATGAGGGCATTTCA
Found at i:26066526 original size:27 final size:27
Alignment explanation
Indices: 26066381--26066537 Score: 160
Period size: 27 Copynumber: 5.9 Consensus size: 27
26066371 TATTACGGTT
* *
26066381 ATTTTACCCTAT-GGGGGTATTTCGGT-
1 ATTTTACCC-ATCGAGGGTATTTCAGTC
* * *
26066407 ATTCTA-CCATACGGGGGTATTTCGGTC
1 ATTTTACCCAT-CGAGGGTATTTCAGTC
* *
26066434 ATTTTACCCTAT-GAGGGCATTTCAATC
1 ATTTTACCC-ATCGAGGGTATTTCAGTC
26066461 ATTTTACCCATCGAGGGTATTTCAGTC
1 ATTTTACCCATCGAGGGTATTTCAGTC
* *
26066488 ATTTTACACATCGAGGGTATTTCATTC
1 ATTTTACCCATCGAGGGTATTTCAGTC
* *
26066515 ATTTTACCCATCGAAGTTATTTC
1 ATTTTACCCATCGAGGGTATTTC
26066538 GACCTAGATA
Statistics
Matches: 112, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
24 2 0.02
25 2 0.02
26 21 0.19
27 83 0.74
28 2 0.02
29 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCAGTC
Found at i:26067968 original size:127 final size:127
Alignment explanation
Indices: 26067742--26067986 Score: 490
Period size: 127 Copynumber: 1.9 Consensus size: 127
26067732 GTAGACATAC
26067742 TTTTATGCACAATTTCCTAACCATTCCCTTACTCAAGGCCCAATACTTCTAGGCCCAAATTTTGG
1 TTTTATGCACAATTTCCTAACCATTCCCTTACTCAAGGCCCAATACTTCTAGGCCCAAATTTTGG
26067807 GGCGTTACAGTTCTACCCCCTTAAAGAAATTTCGTCCTCAAAATTTCCAACTAGAAAAAAAA
66 GGCGTTACAGTTCTACCCCCTTAAAGAAATTTCGTCCTCAAAATTTCCAACTAGAAAAAAAA
26067869 TTTTATGCACAATTTCCTAACCATTCCCTTACTCAAGGCCCAATACTTCTAGGCCCAAATTTTGG
1 TTTTATGCACAATTTCCTAACCATTCCCTTACTCAAGGCCCAATACTTCTAGGCCCAAATTTTGG
26067934 GGCGTTACAGTTCTACCCCCTTAAAGAAATTTCGTCCTCAAAATTTCCAACTA
66 GGCGTTACAGTTCTACCCCCTTAAAGAAATTTCGTCCTCAAAATTTCCAACTA
26067987 ACAAGATAGT
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 118 1.00
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (127 bp):
TTTTATGCACAATTTCCTAACCATTCCCTTACTCAAGGCCCAATACTTCTAGGCCCAAATTTTGG
GGCGTTACAGTTCTACCCCCTTAAAGAAATTTCGTCCTCAAAATTTCCAACTAGAAAAAAAA
Found at i:26069334 original size:32 final size:32
Alignment explanation
Indices: 26069241--26069348 Score: 119
Period size: 32 Copynumber: 3.4 Consensus size: 32
26069231 AATGTGATTG
26069241 GCACAAAGCCATCAGTAGCAGTGATATGATCA
1 GCACAAAGCCATCAGTAGCAGTGATATGATCA
* * *** * *
26069273 ACACACAA-CCATTAGTAATGGTAACATGATCA
1 GCACA-AAGCCATCAGTAGCAGTGATATGATCA
*
26069305 GCACAAAGCCATCAGTAGCAGTGATATGATCG
1 GCACAAAGCCATCAGTAGCAGTGATATGATCA
*
26069337 GCACATAGCCAT
1 GCACAAAGCCAT
26069349 GAATAACAAT
Statistics
Matches: 58, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
31 2 0.03
32 54 0.93
33 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (32 bp):
GCACAAAGCCATCAGTAGCAGTGATATGATCA
Found at i:26069421 original size:32 final size:32
Alignment explanation
Indices: 26069215--26069444 Score: 114
Period size: 32 Copynumber: 7.2 Consensus size: 32
26069205 GAATGGCTAC
* * * * *
26069215 AAGCCATAAGT-ACAATAATGTGATTGGCACA
1 AAGCCATTAGTAACAGTAATATGATCGACACA
* * * *
26069246 AAGCCATCAGTAGCAGTGATATGATCAACACA
1 AAGCCATTAGTAACAGTAATATGATCGACACA
** *
26069278 CAA-CCATTAGTAATGGTAACATGATC-AGCACA
1 -AAGCCATTAGTAACAGTAATATGATCGA-CACA
* * * *
26069310 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATTAGTAACAGTAATATGATCGACACA
* * * * *
26069342 TAGCCATGAATAACAATGAA-ATAATCGGGACAC-
1 AAGCCATTAGTAACAGT-AATATGATC--GACACA
*
26069375 AA-CCATCT-GTAACGGTAATATGATCGACACA
1 AAGCCAT-TAGTAACAGTAATATGATCGACACA
* * * **
26069406 AAGCCATTAGTAACGGTACTATAATCGGTACA
1 AAGCCATTAGTAACAGTAATATGATCGACACA
26069438 AAGCCAT
1 AAGCCAT
26069445 CAATAGCATC
Statistics
Matches: 147, Mismatches: 39, Indels: 25
0.70 0.18 0.12
Matches are distributed among these distances:
30 5 0.03
31 18 0.12
32 116 0.79
33 4 0.03
34 4 0.03
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (32 bp):
AAGCCATTAGTAACAGTAATATGATCGACACA
Found at i:26069433 original size:96 final size:96
Alignment explanation
Indices: 26069275--26069449 Score: 221
Period size: 96 Copynumber: 1.8 Consensus size: 96
26069265 TATGATCAAC
* * *
26069275 ACACAACCATTAGTAATGGTAACATGATCAGCACAAAGCCATCAGTAGCAGTGATATGATCGGCA
1 ACACAACCATTAGTAACGGTAACATGATCAGCACAAAGCCATCAGTAACAGTGATATAATCGGCA
* *
26069340 CATAGCCATGAATAACAATGAAATAATCGGG
66 CAAAGCCATCAATAACAATGAAATAATCGGG
* * *
26069371 ACACAACCATCT-GTAACGGTAATATGATC-GACACAAAGCCATTAGTAACGGT-ACTATAATCG
1 ACACAACCAT-TAGTAACGGTAACATGATCAG-CACAAAGCCATCAGTAACAGTGA-TATAATCG
*
26069433 GTACAAAGCCATCAATA
63 GCACAAAGCCATCAATA
26069450 GCATCGAAGT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
95 2 0.03
96 64 0.96
97 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (96 bp):
ACACAACCATTAGTAACGGTAACATGATCAGCACAAAGCCATCAGTAACAGTGATATAATCGGCA
CAAAGCCATCAATAACAATGAAATAATCGGG
Found at i:26069445 original size:64 final size:64
Alignment explanation
Indices: 26069240--26069452 Score: 209
Period size: 64 Copynumber: 3.3 Consensus size: 64
26069230 TAATGTGATT
* * *
26069240 GGCACAAAGCCATCAGTAGCAGTGATATGATCAACACACAA-CCATTAGTAATGGTAACATGATC
1 GGCACAAAGCCATCAGTAGCAGTGATATGATCGACACA-AAGCCATTAGTAACGGTAACATAATC
* * * * * **
26069304 AGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACATAGCCATGAATAACAATGAA-ATAATC
1 GGCACAAAGCCATCAGTAGCAGTGATATGATCGACACAAAGCCATTAGTAACGGT-AACATAATC
* * * * *
26069368 GGGACACAA-CCATCTGTAACGGTAATATGATCGACACAAAGCCATTAGTAACGGT-ACTATAAT
1 GGCACA-AAGCCATCAGTAGCAGTGATATGATCGACACAAAGCCATTAGTAACGGTAAC-ATAAT
26069431 C
64 C
* *
26069432 GGTACAAAGCCATCAATAGCA
1 GGCACAAAGCCATCAGTAGCA
26069453 TCGAAGTAAT
Statistics
Matches: 116, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
62 1 0.01
63 3 0.03
64 108 0.93
65 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.20
Consensus pattern (64 bp):
GGCACAAAGCCATCAGTAGCAGTGATATGATCGACACAAAGCCATTAGTAACGGTAACATAATC
Found at i:26069652 original size:24 final size:23
Alignment explanation
Indices: 26069625--26069702 Score: 84
Period size: 24 Copynumber: 3.3 Consensus size: 23
26069615 GCTTAGAATC
26069625 AGTCATTCAAATCACAGACAAATT
1 AGTCATTCAAA-CACAGACAAATT
* *
26069649 AGTCATACCAAACACAGACAAATC
1 AGTCAT-TCAAACACAGACAAATT
* * *
26069673 AGTCATTTAACCACAGACAAAAT
1 AGTCATTCAAACACAGACAAATT
*
26069696 AATCATT
1 AGTCATT
26069703 TGACCTCGAG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
23 18 0.40
24 23 0.51
25 4 0.09
ACGTcount: A:0.47, C:0.23, G:0.08, T:0.22
Consensus pattern (23 bp):
AGTCATTCAAACACAGACAAATT
Found at i:26069774 original size:27 final size:27
Alignment explanation
Indices: 26069739--26070056 Score: 406
Period size: 27 Copynumber: 11.8 Consensus size: 27
26069729 TTACCCACCA
* *
26069739 GGGCATTACGATCATTTTAACCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* * *
26069766 GGGCATTACGGTCATTGTATCATACAG
1 GGGCATTACGGTCATTTTACCCTACAG
**
26069793 GGGCATTACAATCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
26069820 GGGCATTACGGTCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
*
26069847 GGGCATTATGGTCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* *
26069874 GGGCATTAGGGTCATTTTAACCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
26069901 GGGCATTACGGTCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
*
26069928 GGGTATTACGGTCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* * *
26069955 GGTCATTACGATCATTTTACCCTATAG
1 GGGCATTACGGTCATTTTACCCTACAG
* * *
26069982 GGGTATTACGGTCATTTTACCTTA-TG
1 GGGCATTACGGTCATTTTACCCTACAG
* * * *
26070008 AGGGTATTTCGGT-ATTCTACCCTACAT
1 -GGGCATTACGGTCATTTTACCCTACAG
* *
26070035 GGGTATTTCGGTCATTTTACCC
1 GGGCATTACGGTCATTTTACCC
26070057 ATTGAGGGTA
Statistics
Matches: 256, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 22 0.09
27 234 0.91
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGGCATTACGGTCATTTTACCCTACAG
Found at i:26070065 original size:27 final size:27
Alignment explanation
Indices: 26069804--26070128 Score: 206
Period size: 27 Copynumber: 12.1 Consensus size: 27
26069794 GGCATTACAA
* * *
26069804 TCATTTTACCC-TACAGGGGCATTACGG
1 TCATTTTACCCATAGA-GGGTATTTCGG
* *
26069831 TCATTTTACCC-TACAGGGGCATTAT-GG
1 TCATTTTACCCATAGA-GGGTATT-TCGG
* * **
26069858 TCATTTTACCC-TACAGGGGCATTAGGG
1 TCATTTTACCCATAGA-GGGTATTTCGG
* * * *
26069885 TCATTTTAACC-TACAGGGGCATTACGG
1 TCATTTTACCCATAGA-GGGTATTTCGG
* *
26069912 TCATTTTACCC-TACAGGGGTATTACGG
1 TCATTTTACCCATAGA-GGGTATTTCGG
* * *
26069939 TCATTTTACCC-TACAGGGTCATTACGA
1 TCATTTTACCCATAGAGGGT-ATTTCGG
*
26069966 TCATTTTACCCTATAG-GGGTATTACGG
1 TCATTTTACCC-ATAGAGGGTATTTCGG
*
26069993 TCATTTTA-CCTTATGAGGGTATTTCGG
1 TCATTTTACCCATA-GAGGGTATTTCGG
* *
26070020 T-ATTCTACCC-TACATGGGTATTTCGG
1 TCATTTTACCCATAGA-GGGTATTTCGG
* *
26070046 TCATTTTACCCATTGAGGGTATTTCGA
1 TCATTTTACCCATAGAGGGTATTTCGG
* * *
26070073 TCATTTTACCCATCGAAGGTACTTCGG
1 TCATTTTACCCATAGAGGGTATTTCGG
* *
26070100 TCATTTTA-CCATTTGGGGGTATTTCGG
1 TCATTTTACCCA-TAGAGGGTATTTCGG
26070127 TC
1 TC
26070129 CATAAATCGA
Statistics
Matches: 261, Mismatches: 25, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.01
26 29 0.11
27 221 0.85
28 6 0.02
29 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCATAGAGGGTATTTCGG
Found at i:26070099 original size:80 final size:81
Alignment explanation
Indices: 26069774--26070109 Score: 269
Period size: 81 Copynumber: 4.2 Consensus size: 81
26069764 AGGGGCATTA
* * * * * * * *
26069774 CGGTCATTGTATCATACAGGGGCATTACAATCATTTTACCCTACAGGGGCATTACGGTCATTTTA
1 CGGTCATTTTACCCTACAGGGTCATTACGATCATTTTACCCTATAGGGGTATTACGATCATTTTA
**
26069839 CC-C-T-ACAGGGGCATT
66 CCTCATGA-AGGTAC-TT
* * * * * * * *
26069854 ATGGTCATTTTACCCTACAGGGGCATTAGGGTCATTTTAACCTACAGGGGCATTACGGTCATTTT
1 -CGGTCATTTTACCCTACAGGGTCATTACGATCATTTTACCCTATAGGGGTATTACGATCATTTT
*
26069919 ACCCTACA-G-GGGTA-TT
65 A-CCT-CATGAAGGTACTT
*
26069935 ACGGTCATTTTACCCTACAGGGTCATTACGATCATTTTACCCTATAGGGGTATTACGGTCATTTT
1 -CGGTCATTTTACCCTACAGGGTCATTACGATCATTTTACCCTATAGGGGTATTACGATCATTTT
* * *
26070000 ACCTTATGAGGGTATTT
65 ACCTCATGAAGGTACTT
* * * * *
26070017 CGGT-ATTCTACCCTACATGGGT-ATTTCGGTCATTTTACCC-ATTGAGGGTATTTCGATCATTT
1 CGGTCATTTTACCCTACA-GGGTCATTACGATCATTTTACCCTATAG-GGGTATTACGATCATTT
26070079 TACC-CATCGAAGGTACTT
64 TACCTCAT-GAAGGTACTT
26070097 CGGTCATTTTACC
1 CGGTCATTTTACC
26070110 ATTTGGGGGT
Statistics
Matches: 214, Mismatches: 29, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
79 6 0.03
80 63 0.29
81 138 0.64
82 4 0.02
83 2 0.01
84 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (81 bp):
CGGTCATTTTACCCTACAGGGTCATTACGATCATTTTACCCTATAGGGGTATTACGATCATTTTA
CCTCATGAAGGTACTT
Found at i:26071880 original size:56 final size:57
Alignment explanation
Indices: 26071743--26071922 Score: 231
Period size: 57 Copynumber: 3.2 Consensus size: 57
26071733 AAAATGATGT
* * *
26071743 AAGAAAAGACAAGTGAATAGAAAATATTCTCTCGCGTAAACT-ATAAATATTCCCTGC
1 AAGAAAAGACAAGTGAACAGGAAATATTCTCTAGCGTAAA-TAATAAATATTCCCTGC
* * *
26071800 AAGAAAAAACAAGTGAACAAGAAATATT-TACTAGCGTAAATAATACATATTCCCT-C
1 AAGAAAAGACAAGTGAACAGGAAATATTCT-CTAGCGTAAATAATAAATATTCCCTGC
* * * *
26071856 AAGAAAAGACAAGTGAACAGGAAATATTCTTTGGCATAAATAGTAAATATTCCCTGC
1 AAGAAAAGACAAGTGAACAGGAAATATTCTCTAGCGTAAATAATAAATATTCCCTGC
26071913 AAGAAAAGAC
1 AAGAAAAGAC
26071923 GCATAAATAG
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
56 49 0.46
57 57 0.54
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.23
Consensus pattern (57 bp):
AAGAAAAGACAAGTGAACAGGAAATATTCTCTAGCGTAAATAATAAATATTCCCTGC
Found at i:26080410 original size:30 final size:30
Alignment explanation
Indices: 26080369--26080432 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
26080359 ATACTAGAGT
26080369 TCTACAAGGGCGTGTCACAACCTCTTGTAC
1 TCTACAAGGGCGTGTCACAACCTCTTGTAC
* * *
26080399 TCTATAAGGGCGTGTCGCCACCTCTTGTAC
1 TCTACAAGGGCGTGTCACAACCTCTTGTAC
26080429 TCTA
1 TCTA
26080433 ATTCTACTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (30 bp):
TCTACAAGGGCGTGTCACAACCTCTTGTAC
Found at i:26081054 original size:224 final size:224
Alignment explanation
Indices: 26080664--26081110 Score: 795
Period size: 224 Copynumber: 2.0 Consensus size: 224
26080654 TGAAATTCAA
*
26080664 TATAGTTTCCATTCTATGCGATTGGTTCGATAAACTTTGAGTCATAGTTAAAGTAGTTCGTGGTT
1 TATAGTTTCCATTCTATGCGATTGGTTCGATAAACTTTGAGTCATAGTCAAAGTAGTTCGTGGTT
* * *
26080729 CAAAAATAGCGAATAAGGTCATTCGGTAGAAAGCCTAGATTGACTTTAGTCCACCTCGTACAAAT
66 CAAAAATAACAAATAAGGTCATTCGGTAGAAAGCCTAGATTGACTTTAGTCCACCTCGTACAAAG
*
26080794 CACATGTATAATTTTGGTTAAGTTTATTGATGTAAATAATGCAATGGACTCGGTTTTAGAAAATT
131 CACATGTATAATTTTGGTTAAGTTTATTGATGTAAATAATACAATGGACTCGGTTTTAGAAAATT
26080859 TTAAAACTTCCATTGTACCTAAAATAATC
196 TTAAAACTTCCATTGTACCTAAAATAATC
* *
26080888 TATAGTTTCCATTTTATGCGATTGGTTTGATAAACTTTGAGTCATAGTCAAAGTAGTTCGTGGTT
1 TATAGTTTCCATTCTATGCGATTGGTTCGATAAACTTTGAGTCATAGTCAAAGTAGTTCGTGGTT
* *
26080953 CAAAAATAACAAATAAGGTCATTCGGTAGAAAGCCTAGATTTACTTTAGTCCATCTCGTACAAAG
66 CAAAAATAACAAATAAGGTCATTCGGTAGAAAGCCTAGATTGACTTTAGTCCACCTCGTACAAAG
26081018 CACATGTATAATTTTGGTTAAGTTTATTGATGTAAATAATACAATGGACTCGGTTTTAGAAAATT
131 CACATGTATAATTTTGGTTAAGTTTATTGATGTAAATAATACAATGGACTCGGTTTTAGAAAATT
* *
26081083 TTGAAACTTCCATTGTACCTGAAATAAT
196 TTAAAACTTCCATTGTACCTAAAATAAT
26081111 TATTTTCTAA
Statistics
Matches: 212, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
224 212 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (224 bp):
TATAGTTTCCATTCTATGCGATTGGTTCGATAAACTTTGAGTCATAGTCAAAGTAGTTCGTGGTT
CAAAAATAACAAATAAGGTCATTCGGTAGAAAGCCTAGATTGACTTTAGTCCACCTCGTACAAAG
CACATGTATAATTTTGGTTAAGTTTATTGATGTAAATAATACAATGGACTCGGTTTTAGAAAATT
TTAAAACTTCCATTGTACCTAAAATAATC
Found at i:26094529 original size:18 final size:19
Alignment explanation
Indices: 26094492--26094530 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26094482 TAGGATTTAA
* *
26094492 TACTGTATATCTGTTACTG
1 TACTGAATATCTGATACTG
26094511 TACTGAATAT-TGATACTG
1 TACTGAATATCTGATACTG
26094529 TA
1 TA
26094531 TTGGGCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (19 bp):
TACTGAATATCTGATACTG
Found at i:26115342 original size:20 final size:20
Alignment explanation
Indices: 26115314--26115355 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
26115304 TTATTTTCTA
*
26115314 TTTTAATTT-TTGTTTTGTTT
1 TTTTAATTTATT-TTTTATTT
*
26115334 TTTTCATTTATTTTTTATTT
1 TTTTAATTTATTTTTTATTT
26115354 TT
1 TT
26115356 ATTTTTACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.81
Consensus pattern (20 bp):
TTTTAATTTATTTTTTATTT
Found at i:26115360 original size:5 final size:6
Alignment explanation
Indices: 26115302--26115362 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
26115292 TTTAAAGAAC
* * * *
26115302 TTTTAT TTTCTAT TTTAAT TTTTGT TTTGTTT TTTTCAT TTAT-T TTTTAT
1 TTTTAT TTT-TAT TTTTAT TTTTAT TTT-TAT TTTT-AT TTTTAT TTTTAT
26115352 TTTTAT TTTTA
1 TTTTAT TTTTA
26115363 CTATGAATCA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
5 4 0.09
6 25 0.57
7 15 0.34
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:26122186 original size:12 final size:13
Alignment explanation
Indices: 26122162--26122190 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26122152 GGGCTATAAC
26122162 TATTGCATTTATT
1 TATTGCATTTATT
26122175 TATTGC-TTTATT
1 TATTGCATTTATT
26122187 TATT
1 TATT
26122191 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:26129628 original size:72 final size:71
Alignment explanation
Indices: 26129418--26129634 Score: 220
Period size: 72 Copynumber: 3.0 Consensus size: 71
26129408 ATGCTTTACC
* * * * ***
26129418 CGATGTTGCTCACATAAGCTTTAGAGAATTCACATCATGTGCTGAATCTCAAGCCATCAATAAAG
1 CGATGTTGCTCACACAAGCTTT-GAGAATTCGCAACATGTGTTGAATCTCAAGCCATCAATATCC
*
26129483 GATAATT
65 AATAATT
* *** * * *
26129490 CAATGTTGCTCACACAAGCTACAAAGAATT-GACAATATGTGTTGAATCTTAAGCCATCGATATC
1 CGATGTTGCTCACACAAGCT-TTGAGAATTCG-CAACATGTGTTGAATCTCAAGCCATCAATATC
*
26129554 CAATGATT
64 CAATAATT
* *
26129562 CGATGATGCTCACACAAGCATTTGAGAATTCGCAACATGTGTTGAATCTCAAGCCATCAATTTCC
1 CGATGTTGCTCACACAAGC-TTTGAGAATTCGCAACATGTGTTGAATCTCAAGCCATCAATATCC
*
26129627 AATTATT
65 AATAATT
26129634 C
1 C
26129635 ATTTTTTTCT
Statistics
Matches: 115, Mismatches: 26, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
72 113 0.98
73 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (71 bp):
CGATGTTGCTCACACAAGCTTTGAGAATTCGCAACATGTGTTGAATCTCAAGCCATCAATATCCA
ATAATT
Found at i:26133177 original size:23 final size:25
Alignment explanation
Indices: 26133136--26133181 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
26133126 AAATAAAAAT
26133136 AATTGTATTAAATAATTTAATTAGA
1 AATTGTATTAAATAATTTAATTAGA
*
26133161 AATT-TATT-AATATTTTAATTA
1 AATTGTATTAAATAATTTAATTA
26133182 TAAAATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 4 0.20
25 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
AATTGTATTAAATAATTTAATTAGA
Found at i:26133187 original size:24 final size:24
Alignment explanation
Indices: 26133136--26133189 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
26133126 AAATAAAAAT
*
26133136 AATTGTATTAAATAATTTAATTAGA
1 AATT-TATTAAATAATTTAATTAAA
*
26133161 AATTTATT-AATATTTTAATTATAA
1 AATTTATTAAATAATTTAATTA-AA
26133185 AATTT
1 AATTT
26133190 TCTTCATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 12 0.46
24 10 0.38
25 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (24 bp):
AATTTATTAAATAATTTAATTAAA
Found at i:26134184 original size:23 final size:25
Alignment explanation
Indices: 26134143--26134188 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
26134133 AAATAAAAAT
26134143 AATTGTATTAAATAATTTAATTAGA
1 AATTGTATTAAATAATTTAATTAGA
*
26134168 AATT-TATT-AATATTTTAATTA
1 AATTGTATTAAATAATTTAATTA
26134189 TAAAATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 4 0.20
25 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
AATTGTATTAAATAATTTAATTAGA
Found at i:26134194 original size:24 final size:24
Alignment explanation
Indices: 26134143--26134196 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
26134133 AAATAAAAAT
*
26134143 AATTGTATTAAATAATTTAATTAGA
1 AATT-TATTAAATAATTTAATTAAA
*
26134168 AATTTATT-AATATTTTAATTATAA
1 AATTTATTAAATAATTTAATTA-AA
26134192 AATTT
1 AATTT
26134197 TCTTCATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 12 0.46
24 10 0.38
25 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (24 bp):
AATTTATTAAATAATTTAATTAAA
Found at i:26136301 original size:27 final size:27
Alignment explanation
Indices: 26136257--26136423 Score: 172
Period size: 27 Copynumber: 6.1 Consensus size: 27
26136247 GGTCGCCAAA
* *
26136257 ACCCCCAATTTGCAAAAATTATTGAAGT
1 ACCCCCAATTTG-TAAAATTATTGAAAT
* *
26136285 ACCCCCAGTTTGTAAAATTATCGAAAT
1 ACCCCCAATTTGTAAAATTATTGAAAT
* *
26136312 ACCTCCAATTTGTAAAATTATCGAAAT
1 ACCCCCAATTTGTAAAATTATTGAAAT
* *
26136339 ACCCTCAATTTGTGAAATTATTGAAAT
1 ACCCCCAATTTGTAAAATTATTGAAAT
** * *
26136366 ACCTTCAATTCGTAGAATTATTGAAAT
1 ACCCCCAATTTGTAAAATTATTGAAAT
* * * *
26136393 ACCCTCGATTTGCAAAATTTATCGAAAT
1 ACCCCCAATTTGTAAAA-TTATTGAAAT
26136421 ACC
1 ACC
26136424 TTTATAGTTT
Statistics
Matches: 118, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
27 95 0.81
28 23 0.19
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
ACCCCCAATTTGTAAAATTATTGAAAT
Found at i:26136351 original size:54 final size:54
Alignment explanation
Indices: 26136261--26136424 Score: 202
Period size: 54 Copynumber: 3.0 Consensus size: 54
26136251 GCCAAAACCC
* * * *
26136261 CCAATTTGCAAAAATTATTGAAGTACCCCCAGTTTGTAAAATTATCGAAATACCT
1 CCAATTTG-TAAAATTATTGAAATACCCTCAATTTGTAAAATTATCGAAATACCT
* * *
26136316 CCAATTTGTAAAATTATCGAAATACCCTCAATTTGTGAAATTATTGAAATACCT
1 CCAATTTGTAAAATTATTGAAATACCCTCAATTTGTAAAATTATCGAAATACCT
* * * * *
26136370 TCAATTCGTAGAATTATTGAAATACCCTCGATTTGCAAAATTTATCGAAATACCT
1 CCAATTTGTAAAATTATTGAAATACCCTCAATTTGTAAAA-TTATCGAAATACCT
26136425 TTATAGTTTA
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 72 0.77
55 21 0.23
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (54 bp):
CCAATTTGTAAAATTATTGAAATACCCTCAATTTGTAAAATTATCGAAATACCT
Found at i:26136410 original size:81 final size:82
Alignment explanation
Indices: 26136272--26136423 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 82
26136262 CAATTTGCAA
* * * *
26136272 AAATTATTGAAGTACCCCCAGTTTGTAAAATTATCGAAATACCTCCAATTTGTAAAA-TTATCGA
1 AAATTATTGAAATACCCCCAATTCGTAAAATTATCGAAATACCTCCAATTTGCAAAATTTATCGA
26136336 AATACCCTCAATTTGTG
66 AATACCCTCAATTTGTG
** * * *
26136353 AAATTATTGAAATACCTTCAATTCGTAGAATTATTGAAATACC-CTCGATTTGCAAAATTTATCG
1 AAATTATTGAAATACCCCCAATTCGTAAAATTATCGAAATACCTC-CAATTTGCAAAATTTATCG
26136417 AAATACC
65 AAATACC
26136424 TTTATAGTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
80 1 0.02
81 46 0.77
82 13 0.22
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (82 bp):
AAATTATTGAAATACCCCCAATTCGTAAAATTATCGAAATACCTCCAATTTGCAAAATTTATCGA
AATACCCTCAATTTGTG
Found at i:26136687 original size:27 final size:27
Alignment explanation
Indices: 26136637--26136696 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
26136627 ATGGAGGAAG
26136637 TACTGTTACGGGTGGCTCTGCCACA-A
1 TACTGTTACGGGTGGCTCTGCCACATA
* * *
26136663 TTACTGTTACTGGTGGCTTTTCCACATA
1 -TACTGTTACGGGTGGCTCTGCCACATA
26136691 TACTGT
1 TACTGT
26136697 ACTAGCAGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
TACTGTTACGGGTGGCTCTGCCACATA
Found at i:26145992 original size:25 final size:25
Alignment explanation
Indices: 26145950--26146012 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
26145940 TTAATTGTTT
* *
26145950 TCAGTATAGT-CTATCTATATTAGTC
1 TCAGTATA-TACTACCTATAATAGTC
*
26145975 TCAGTATATACTACCTATAATAGTT
1 TCAGTATATACTACCTATAATAGTC
*
26146000 TCAGGATATACTA
1 TCAGTATATACTA
26146013 TCAAAGACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.03
25 32 0.97
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (25 bp):
TCAGTATATACTACCTATAATAGTC
Found at i:26146385 original size:18 final size:17
Alignment explanation
Indices: 26146343--26146386 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
26146333 TGTCGTTCGT
26146343 TTTCAAAACATTATTCA
1 TTTCAAAACATTATTCA
* *
26146360 TTTACAAATCGTTATTCAA
1 TTT-CAAAACATTATTC-A
26146379 TTTCAAAA
1 TTTCAAAA
26146387 TATTTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 3 0.14
18 15 0.68
19 4 0.18
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (17 bp):
TTTCAAAACATTATTCA
Found at i:26149473 original size:85 final size:85
Alignment explanation
Indices: 26149357--26149615 Score: 261
Period size: 85 Copynumber: 3.0 Consensus size: 85
26149347 TAAAAGTAAA
* ** * * * *
26149357 TAAAATCTATTTCGGGATTAATTCCCGCCGTTCAATGGATTTTAATCCATTATTTTGATTTTATT
1 TAAAATCTGTTTCAAGATTTATTCCCACCGTTCAACGGATTATAATCCATTATTTTGATTTTATT
**
26149422 TCCAAGA-GGGAAATTAAAGG
66 TCCAA-ATAAGAAATTAAAGG
26149442 TAAAAT-TCGTTTCAAGATTTATTCCCACCGTTCAACGGATTATAATCCATTATTTTGATTTTAT
1 TAAAATCT-GTTTCAAGATTTATTCCCACCGTTCAACGGATTATAATCCATTATTTTGATTTTAT
26149506 TTCCAAATAAGAAATTAAAGG
65 TTCCAAATAAGAAATTAAAGG
** ***** ** * * * *
26149527 TAAAATCTGTTTCGGGATTTATTTTTGTCGTTCAACAAATTTTATTCTATTATTTTTATTTTATT
1 TAAAATCTGTTTCAAGATTTATTCCCACCGTTCAACGGATTATAATCCATTATTTTGATTTTATT
* * *
26149592 TCCAAACAGGAAAGTAAAGG
66 TCCAAATAAGAAATTAAAGG
26149612 TAAA
1 TAAA
26149616 TAAAATCCAT
Statistics
Matches: 146, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
84 2 0.01
85 143 0.98
86 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (85 bp):
TAAAATCTGTTTCAAGATTTATTCCCACCGTTCAACGGATTATAATCCATTATTTTGATTTTATT
TCCAAATAAGAAATTAAAGG
Found at i:26149846 original size:79 final size:78
Alignment explanation
Indices: 26149613--26149846 Score: 251
Period size: 79 Copynumber: 3.0 Consensus size: 78
26149603 AAGTAAAGGT
* * ** *
26149613 AAATAAAATCCATTTC-GGCATTGGTTCCTACCATTCAACGATTTTATTCCAA-TTT-TTTTATT
1 AAATAAAATCCGTTTCAGG-ATTGATTCCCGCCGTTCAACGATTTTATTCCAATTTTGTTTTATT
* *
26149675 TCCAAAAGCAAGTA
65 TCCAAAAACGAGTA
* * *
26149689 AAATAAAATCTGTTTCAGGATTGATTCCCGCCGTTCAA-TATTTTTATTTCAAATTTTGTTTTAT
1 AAATAAAATCCGTTTCAGGATTGATTCCCGCCGTTCAACGA-TTTTA-TTCCAATTTTGTTTTAT
*
26149753 TTCCAAAAATGAGTA
64 TTCCAAAAACGAGTA
** * **
26149768 AAATAAAATCCGTTTTGGGATTTATTCCCGTTGTTCAACGATTTTATTCCAATTTTGATTTTATT
1 AAATAAAATCCGTTTCAGGATTGATTCCCGCCGTTCAACGATTTTATTCCAATTTTG-TTTTATT
*
26149833 TCCAAAACCGAGTA
65 TCCAAAAACGAGTA
26149847 TTAAAAATAA
Statistics
Matches: 130, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
75 1 0.01
76 34 0.26
77 7 0.05
78 13 0.10
79 74 0.57
80 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (78 bp):
AAATAAAATCCGTTTCAGGATTGATTCCCGCCGTTCAACGATTTTATTCCAATTTTGTTTTATTT
CCAAAAACGAGTA
Found at i:26149964 original size:82 final size:84
Alignment explanation
Indices: 26149854--26150008 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 84
26149844 GTATTAAAAA
* * *
26149854 TAAATTAAAATCTATTACGAGATTTATTCTCGTCATTCAAC-AGA-TTTATTACATTTTGATTTT
1 TAAATTAAAATCTATTACAAGATTTATTCTAGGCATTCAACAAGATTTTATTACATTTTG-TTTT
26149917 GTTGCTAAAAAATGAGAAAT
65 GTTGCTAAAAAATGAGAAAT
* * **
26149937 TAAA-TAAAATCTATTTCAAGATTTATTCTAGGCATTTAACAAGATTTTATTTGATTTTGTTTTG
1 TAAATTAAAATCTATTACAAGATTTATTCTAGGCATTCAACAAGATTTTATTACATTTTGTTTTG
*
26150001 TTTCTAAA
66 TTGCTAAA
26150009 TTAGAATATA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
82 31 0.50
83 19 0.31
84 12 0.19
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (84 bp):
TAAATTAAAATCTATTACAAGATTTATTCTAGGCATTCAACAAGATTTTATTACATTTTGTTTTG
TTGCTAAAAAATGAGAAAT
Found at i:26150027 original size:84 final size:84
Alignment explanation
Indices: 26149854--26150132 Score: 302
Period size: 84 Copynumber: 3.3 Consensus size: 84
26149844 GTATTAAAAA
* * * **
26149854 TAAATTAAAATCTATTACGAGATTTATTCTCGTCATTCAAC-AGA-TTTATTACATTTTGATTTT
1 TAAA-TAAAATCTATTTCGAGATTTATTCTCGCCATTTAACAAGATTTTATTTGATTTTG-TTTT
* *
26149917 GTTGCTAAA--A-AATGAGAAAT
64 GTTTCTAAATTAGAAT-A-TAAT
* * *
26149937 TAAATAAAATCTATTTCAAGATTTATTCTAGGCATTTAACAAGATTTTATTTGATTTTGTTTTGT
1 TAAATAAAATCTATTTCGAGATTTATTCTCGCCATTTAACAAGATTTTATTTGATTTTGTTTTGT
26150002 TTCTAAATTAGAATATAAT
66 TTCTAAATTAGAATATAAT
* * * * *
26150021 TAAATAAAATTTGTTTCGGGATTTATT-TCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTG
1 TAAATAAAATCTATTTCGAGATTTATTCT-CGCCATTTAACAAGATTTTATTTGATTTTGTTTTG
* *
26150085 TTTCCAAATTCGAAT-TAAAT
65 TTTCTAAATTAGAATAT-AAT
26150105 TAAATAAAATCTATTTCGAGATTTATTC
1 TAAATAAAATCTATTTCGAGATTTATTC
26150133 CCACCGTTTA
Statistics
Matches: 166, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
82 31 0.19
83 21 0.13
84 109 0.66
85 2 0.01
86 3 0.02
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (84 bp):
TAAATAAAATCTATTTCGAGATTTATTCTCGCCATTTAACAAGATTTTATTTGATTTTGTTTTGT
TTCTAAATTAGAATATAAT
Found at i:26150140 original size:84 final size:82
Alignment explanation
Indices: 26149933--26150159 Score: 278
Period size: 84 Copynumber: 2.7 Consensus size: 82
26149923 AAAAAATGAG
* * * * *
26149933 AAATTAAATAAAATCTATTTCAAGATTTATTCTAGGCATTTAACAAGATTTTATTTGATTTTGTT
1 AAATTAAATAAAATCTATTTCGAGATTTATTCCA-CCGTTTAACAAGATTTTATTTGATTTTATT
*
26149998 TTGTTTCTAAATTAGAAT
65 TTGTTTCCAAATTAGAAT
* * * *
26150016 ATAATTAAATAAAATTTGTTTCGGGATTTATTTCCGCCGTTTAACAAGATTTTATTTGATTTTAT
1 A-AATTAAATAAAATCTATTTCGAGATTTA-TTCCACCGTTTAACAAGATTTTATTTGATTTTAT
*
26150081 TTTGTTTCCAAATTCGAATT
64 TTTGTTTCCAAATTAGAA-T
* *
26150101 AAATTAAATAAAATCTATTTCGAGATTTATTCCCACCGTTTAA-TAGATTTT-TTTTATTT
1 AAATTAAATAAAATCTATTTCGAGATTTATT-CCACCGTTTAACAAGATTTTATTTGATTT
26150160 AATGATATAA
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
82 7 0.06
83 10 0.08
84 101 0.82
85 5 0.04
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (82 bp):
AAATTAAATAAAATCTATTTCGAGATTTATTCCACCGTTTAACAAGATTTTATTTGATTTTATTT
TGTTTCCAAATTAGAAT
Found at i:26163066 original size:328 final size:326
Alignment explanation
Indices: 26162454--26163102 Score: 911
Period size: 328 Copynumber: 2.0 Consensus size: 326
26162444 AATTATGAGT
* *
26162454 TATAGTTTAACTAAACTTACATTACATATTTAAATAAATAATTTATGACATTATTTTTATCAAAT
1 TATAGTTCAACTAAACTTACATTACATATTTAAATAAATAATTTATGACAATATTTTTATCAAAT
* *
26162519 AAAATATTGAATTATAAAATATATAAAAAAATTATAAATTGTTTAAATTTATTTATGAAATCAAT
66 AAAATATTGAATTACAAAATATATAAAAAAATTATAAATTATTTAAATTTATTTATGAAATCAAT
* *
26162584 TATCAAATTTAATTTATACAAAAAATTAAAATAATTATAAAATATTTTAATTGATATATACAATT
131 TATCAAATTTAATTTATACAAAAAATTAAAATAATTATAAAATATTTTAATTAATATATACAATC
* * *
26162649 TAAACTTGTAAAACAAGTAAAAAATAAAATAAAAATCTTTGGTTAAACTGGAAAACCAAGAAAAA
196 CAAAC-TATAAAACAAGTAAAAAATAAAATAAAAATCTTTGGTCAAACTGGAAAACCAAGAAAAA
* * * * *
26162714 GAATAACATATGTTTTGATAGAAAGCTTACGTGAGGCATGACGTTTAGTTGGACAATTATACCGT
260 GAATAACACATGTCTTGATAGAAAGCTTACGTCAGCCATGACGTTTAGTTGGACAACTATACCGT
26162779 GG
325 GG
* *
26162781 TATATGTTCAACTAAGCTTACATTACATATTTAAATAAATAATTTATGATAATATTTTTATCAAA
1 TATA-GTTCAACTAAACTTACATTACATATTTAAATAAATAATTTATGACAATATTTTTATCAAA
* * *
26162846 TAAAATATTGAATTACAAGATATA-AAAAAAGTTATAAATTATTTAAATTTATTTAT-AATATGA
65 TAAAATATTGAATTACAAAATATATAAAAAAATTATAAATTATTTAAATTTATTTATGAA-ATCA
*
26162909 ATTATCAAATTTAGTTTATAC-AAAAATTAAAATAATTATAAAATATTTTAATTAATATATACAA
129 ATTATCAAATTTAATTTATACAAAAAATTAAAATAATTATAAAATATTTTAATTAATATATACAA
* * *
26162973 -CCAAA-TATACATATTGCCGAA-T-AAAAATATAA-AAAAATCTGCTTGGTCAAATTGGAAAAC
194 TCCAAACTATA-A-A---AC-AAGTAAAAAATAAAATAAAAATCT--TTGGTCAAACTGGAAAAC
*
26163033 CTAGAAAAAGAAT-ACTACATGTCTTGATAGAAAGCTTACGTCAGCCATGACGTTTAGTTGGACA
251 CAAGAAAAAGAATAAC-ACATGTCTTGATAGAAAGCTTACGTCAGCCATGACGTTTAGTTGGACA
26163097 ACTATA
315 ACTATA
26163103 ATGTGAGAGA
Statistics
Matches: 287, Mismatches: 24, Indels: 21
0.86 0.07 0.06
Matches are distributed among these distances:
323 3 0.01
324 1 0.00
325 4 0.01
326 52 0.18
327 68 0.24
328 157 0.55
329 2 0.01
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.35
Consensus pattern (326 bp):
TATAGTTCAACTAAACTTACATTACATATTTAAATAAATAATTTATGACAATATTTTTATCAAAT
AAAATATTGAATTACAAAATATATAAAAAAATTATAAATTATTTAAATTTATTTATGAAATCAAT
TATCAAATTTAATTTATACAAAAAATTAAAATAATTATAAAATATTTTAATTAATATATACAATC
CAAACTATAAAACAAGTAAAAAATAAAATAAAAATCTTTGGTCAAACTGGAAAACCAAGAAAAAG
AATAACACATGTCTTGATAGAAAGCTTACGTCAGCCATGACGTTTAGTTGGACAACTATACCGTG
G
Found at i:26168302 original size:24 final size:24
Alignment explanation
Indices: 26168243--26168304 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 24
26168233 CATATGAACG
* *
26168243 AGTAAAAAAAATGAAAACGTAAATAA
1 AGTAATAAAAAT--AAACGTAAACAA
* *
26168269 A-TAATCAAAATAAACGTGAACAA
1 AGTAATAAAAATAAACGTAAACAA
26168292 AGTAATAAAAATA
1 AGTAATAAAAATA
26168305 TAAAAACATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 11 0.37
24 10 0.33
25 8 0.27
26 1 0.03
ACGTcount: A:0.66, C:0.06, G:0.10, T:0.18
Consensus pattern (24 bp):
AGTAATAAAAATAAACGTAAACAA
Found at i:26170327 original size:131 final size:131
Alignment explanation
Indices: 26170162--26170652 Score: 815
Period size: 131 Copynumber: 3.7 Consensus size: 131
26170152 CCATACTACA
* * *
26170162 TTGGGAAGATAAGATTCATCATCTTCGATCTGCTCCACTACTACTCAGGGAGACAGAATTTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGCAA
*
26170227 T-TTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTT-GACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTA
26170291 TC
130 TC
* *
26170293 TTGGGAAGATAAGCTTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGCAA
*
26170358 TCTTTGACCTATTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTAT
66 TCTTTGACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTAT
26170423 C
131 C
* *
26170424 TTGGGAAGATAAGATTCACCATCCTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTT-TA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAAT-TTGCA
*
26170488 ATCTTTGACCTATTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
65 ATCTTTGACCTACTCCACTACTGCTTAGGGAGATAGGAC-AATGGCTTAAATCTGCTTCTCCACT
26170553 ATC
129 ATC
* * * *
26170556 TTGGGAAGATAAGATTCACCATCTTTGATCTGCTCGACTACTGCTTAGGGGGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGCAA
26170621 TCTTTGACCTACTCCACTACTGCTTAGGGAGA
66 TCTTTGACCTACTCCACTACTGCTTAGGGAGA
26170653 CAGAATCTGC
Statistics
Matches: 338, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
131 217 0.64
132 121 0.36
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (131 bp):
TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGCAA
TCTTTGACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTAT
C
Found at i:26170389 original size:44 final size:45
Alignment explanation
Indices: 26170325--26170696 Score: 174
Period size: 44 Copynumber: 8.5 Consensus size: 45
26170315 TTTCGATCTG
26170325 CTCCACTACTGCTTAGGGAGACAGA-ATTTGCAATCTTTGACCTA
1 CTCCACTACTGCTTAGGGAGACAGACATTTGCAATCTTTGACCTA
* * * * *
26170369 TTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATC--TG--CTT
1 CTCCACTACTGCTTAGGGAGACA-GACATTTGC---AATCTTTGACCTA
* * ** * * * * *
26170414 CTCCACTA-T-CTT-GGGAAGATA-AGATTCACCATCCTCGATCTG
1 CTCCACTACTGCTTAGGG-AGACAGACATTTGCAATCTTTGACCTA
*
26170456 CTCCACTACTGCTTAGGGAGACAGA-ATCTT-TAATCTTTGACCTA
1 CTCCACTACTGCTTAGGGAGACAGACAT-TTGCAATCTTTGACCTA
* * * * *
26170500 TTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATC--TG--CTT
1 CTCCACTACTGCTTAGGGAGACA-GAC-ATTTGC---AATCTTTGACCTA
* * ** * * *
26170546 CTCCACTA-T-CTT-GGGAAGATA-AGATTCACCATCTTTGATCTG
1 CTCCACTACTGCTTAGGG-AGACAGACATTTGCAATCTTTGACCTA
* * *
26170588 CTCGACTACTGCTTAGGGGGACAGA-ATCTGCAATCTTTGACCTA
1 CTCCACTACTGCTTAGGGAGACAGACATTTGCAATCTTTGACCTA
* **
26170632 CTCCACTACTGCTTAGGGAGACAGA-ATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGACAGACATTTGCAATCTTTGACCTA
* *
26170676 CTCCGCTACTGCTTAGAGAGA
1 CTCCACTACTGCTTAGGGAGA
26170697 TAGGATCAGT
Statistics
Matches: 248, Mismatches: 49, Indels: 62
0.69 0.14 0.17
Matches are distributed among these distances:
38 6 0.02
40 3 0.01
41 7 0.03
42 23 0.09
43 13 0.05
44 146 0.59
45 23 0.09
46 14 0.06
47 3 0.01
48 2 0.01
49 4 0.02
50 4 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (45 bp):
CTCCACTACTGCTTAGGGAGACAGACATTTGCAATCTTTGACCTA
Found at i:26170628 original size:263 final size:262
Alignment explanation
Indices: 26170162--26170652 Score: 817
Period size: 263 Copynumber: 1.9 Consensus size: 262
26170152 CCATACTACA
* *
26170162 TTGGGAAGATAAGATTCATCATCTTCGATCTGCTCCACTACTACTCAGGGAGACAGAATTTGCAA
1 TTGGGAAGATAAGATTCACCATCCTCGATCTGCTCCACTACTACTCAGGGAGACAGAATTTGCAA
26170227 TTTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTAT
66 TTTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTAT
* *
26170292 CTTGGGAAGATAAGCTTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGCA
131 CTTGGGAAGATAAGATTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
*
26170357 ATCTTTGACCTATTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTA
196 ATCTTTGACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTA
26170422 TC
261 TC
* * *
26170424 TTGGGAAGATAAGATTCACCATCCTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTT-TA
1 TTGGGAAGATAAGATTCACCATCCTCGATCTGCTCCACTACTACTCAGGGAGACAGAAT-TTGCA
* *
26170488 ATCTTT-GACCTATTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
65 AT-TTTCAACCTACTCCACTACTGCTTAGGGAGATAGGAC-AATGGCTTAAATCTGCTTCTCCAC
* *
26170552 TATCTTGGGAAGATAAGATTCACCATCTTT-GATCTGCTCGACTACTGCTTAGGGGGACAGAATC
128 TATCTTGGGAAGATAAGATTCACCAT-TTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATC
26170616 TGCAATCTTTGACCTACTCCACTACTGCTTAGGGAGA
192 TGCAATCTTTGACCTACTCCACTACTGCTTAGGGAGA
26170653 CAGAATCTGC
Statistics
Matches: 213, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
262 89 0.42
263 121 0.57
264 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (262 bp):
TTGGGAAGATAAGATTCACCATCCTCGATCTGCTCCACTACTACTCAGGGAGACAGAATTTGCAA
TTTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTAT
CTTGGGAAGATAAGATTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
ATCTTTGACCTACTCCACTACTGCTTAGGGAGATAGGACAATGGCTTAAATCTGCTTCTCCACTA
TC
Found at i:26170817 original size:51 final size:51
Alignment explanation
Indices: 26170741--26170918 Score: 164
Period size: 50 Copynumber: 3.5 Consensus size: 51
26170731 GTTGGGGAAG
*
26170741 TAAGATTCGTCC-TCGTAGCTTCAATCTATTCCACTACACCACCAAGGAAAA
1 TAAGATTCG-CCGTCGTAGCCTCAATCTATTCCACTACACCACCAAGGAAAA
* **** * **** * * *
26170792 TAAGATTCGCCGTCGTGGCCTCAATCTATTAGTTTGCAATGTC-GGGGAAG
1 TAAGATTCGCCGTCGTAGCCTCAATCTATTCCACTACACCACCAAGGAAAA
* * *
26170842 TGAGATTCGTCGTCGTAGCTTCAA-CTATTCCACTACACCACCAAGGAAAA
1 TAAGATTCGCCGTCGTAGCCTCAATCTATTCCACTACACCACCAAGGAAAA
*
26170892 TAAGATTCGCCGTCGTGGCCTCAATCT
1 TAAGATTCGCCGTCGTAGCCTCAATCT
26170919 TTTAGTTTAC
Statistics
Matches: 90, Mismatches: 34, Indels: 6
0.69 0.26 0.05
Matches are distributed among these distances:
49 9 0.10
50 50 0.56
51 31 0.34
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (51 bp):
TAAGATTCGCCGTCGTAGCCTCAATCTATTCCACTACACCACCAAGGAAAA
Found at i:26170856 original size:50 final size:50
Alignment explanation
Indices: 26170794--26170971 Score: 151
Period size: 50 Copynumber: 3.6 Consensus size: 50
26170784 AAGGAAAATA
* *
26170794 AGATTCGCCGTCGTGGCCTCAATCTATTAGTTTGCAATGTCGGGGAAGTG
1 AGATTCGCCGTCGTAGCCTCAATCTATTAGTTTACAATGTCGGGGAAGTG
* * **** **** * * * *
26170844 AGATTCGTCGTCGTAGCTTCAA-CTATTCCACTACACCACCAAGGAAAATA
1 AGATTCGCCGTCGTAGCCTCAATCTATTAGTTTACAATGTC-GGGGAAGTG
* *
26170894 AGATTCGCCGTCGTGGCCTCAATCTTTTAGTTTACAATGTCGGGGAAGTG
1 AGATTCGCCGTCGTAGCCTCAATCTATTAGTTTACAATGTCGGGGAAGTG
* * *
26170944 AGATTCACTGTCGTAGCTTCAATCTATT
1 AGATTCGCCGTCGTAGCCTCAATCTATT
26170972 CCACTTCACC
Statistics
Matches: 89, Mismatches: 37, Indels: 4
0.68 0.28 0.03
Matches are distributed among these distances:
49 9 0.10
50 71 0.80
51 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (50 bp):
AGATTCGCCGTCGTAGCCTCAATCTATTAGTTTACAATGTCGGGGAAGTG
Found at i:26171013 original size:50 final size:49
Alignment explanation
Indices: 26170892--26171989 Score: 270
Period size: 50 Copynumber: 22.1 Consensus size: 49
26170882 CCAAGGAAAA
* * * * * * *
26170892 TAAGATTCGCCGTCGTGGCCTCAATCTTT-TAGTTTACAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCA-CTT-CAACGCCTGGGAAG
* * * * * *
26170942 TGAGATTCACTGTCGTAGCTTCAATCTATTCCACTTCACCGCCTGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAAG
* * ** * * * *
26170992 TAAGATTCGCCATTGTGGCTTCAATATTTTAATTTACAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTGGGAAG
* * * * * * * *
26171042 CAGGATTTGACGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAAG
* ** * * *
26171091 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTC-GTGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTG-GGAAG
* * * * * *
26171141 CAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAAG
** ** * * * *
26171190 TAAGATTCGCCGTTGTGGCCACAATCTTTTAAATTGCAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTGGGAAG
* * * * * * **
26171240 CAGGATTCGCCATTGTAGCTTCAATCTGTTCCGCTACGTCGCCT-GGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAAG
* * ** * * *
26171289 TAAGATTCGTCGTTGTGGCCTCAATCTTTTAAATTGCAATG-TTGGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCT-GGGAAG
* * * * * * *
26171339 CAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAAG
* * * * * * *
26171388 TAAGATTCACCGTTGTGGCCTCAATCTTT-AAATTACAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTGGGAAG
* * * * * * * *
26171437 CAGGATTCACCGTTGTAGCTTCAATCTATTCCGCTGCATCGCCT-GAAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAAG
* * * ** * * * *
26171486 TAAAATTCACCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTGGGAAG
* * * ** * * *
26171536 CAGGATTCGCCGTTGTAGCTTCAATCTATTCTGCTGT-ATCACCT-AGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACT-TCAACGCCTGGGAAG
** * ** * * * *
26171585 TAAGATTTACCGTTGTGGCCTCAATCTTTTAAATTGCAATGTC-AGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTGGGAAG
* * * * * ** * * * *
26171634 CAGGAGTCGCCGTTGTAGTTTCAATCTGTTCTGCTGCATCGTCT-GAAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAAG
* * ** * * * *
26171683 TAAGATTCGTCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCAGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTGGGAAG
* * * * **** * *
26171733 CAGGATTCGCTGTTGTAGCTTCAAT-TTGTTTTGTTGCATCGCCT-GAAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTT-TCCACTT-CAACGCCTGGGAAG
* * * ** * * * *
26171782 TGAGATTCGTCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTGGGAAG
* * * * * *
26171832 CAGGATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCT-GGAATG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAACGCCTGGGAA-G
* * ** * * *
26171882 TAATATTTGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTC-GAGGAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTT-CAACGCCTG-GGAAG
* * * * * *
26171932 CAAGATTTGCCATTATGGCTTCAATCTGTTCCACTGC-ACTGCCAGGGAAAG
1 TAAGATTCGCCGTTGTGGCTTCAATCT-TTCCACTTCAAC-GCCTGGG-AAG
26171983 TAAGATT
1 TAAGATT
26171990 TGTTGTCTTT
Statistics
Matches: 709, Mismatches: 295, Indels: 87
0.65 0.27 0.08
Matches are distributed among these distances:
47 2 0.00
48 25 0.04
49 306 0.43
50 331 0.47
51 43 0.06
52 2 0.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (49 bp):
TAAGATTCGCCGTTGTGGCTTCAATCTTTCCACTTCAACGCCTGGGAAG
Found at i:26171131 original size:99 final size:99
Alignment explanation
Indices: 26170725--26171969 Score: 1512
Period size: 99 Copynumber: 12.5 Consensus size: 99
26170715 TCTGTTTAAC
* * * * * * * * * *
26170725 TGCAATGTTGGGGAAGTAAGATTCGTCC-TCGTAGCTTCAATCTATTCCACTACACCACCAAGGA
1 TGCAATGTCGGGGAAGCAGGATTCG-CCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC-TGG-
* * * **
26170789 AAATAAGATTCGCCGTCGTGGCCTCAATCTATTAGTT
63 AAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * * * * * * *
26170826 TGCAATGTCGGGGAAG-TGAGATTCGTCGTCGTAGCTTCAA-CTATTCCACTACACCACCAAGGA
1 TGCAATGTCGGGGAAGCAG-GATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC-TGG-
* * **
26170889 AAATAAGATTCGCCGTCGTGGCCTCAATCTTTTAGTT
63 AAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * * * * * * *
26170926 TACAATGTCGGGGAAG-TGAGATTCACTGTCGTAGCTTCAATCTATTCCACTTCACCGCCTGGGA
1 TGCAATGTCGGGGAAGCAG-GATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGA
* * * *
26170990 AGTAAGATTCGCCATTGTGGCTTCAATATTTTAATT
64 AGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * *
26171026 TACAATGTCGGGGAAGCAGGATTTGACGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
26171091 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
*
26171125 TGCAATGTCGTGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
*
26171190 TAAGATTCGCCGTTGTGGCCACAATCTTTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * *
26171224 TGCAATGTCGGGGAAGCAGGATTCGCCATTGTAGCTTCAATCTGTTCCGCTACGTCGCCTGGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
*
26171289 TAAGATTCGTCGTTGTGGCCTCAATCTTTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* *
26171323 TGCAATGTTGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
*
26171388 TAAGATTCACCGTTGTGGCCTCAATC-TTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * *
26171421 TACAATGTCGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTATTCCGCTGCATCGCCTGAAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
26171486 TAAAATTCACCGTTGTGGCCTCAATCTTTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * * *
26171520 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTATTCTGCTGTATCACCTAGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
**
26171585 TAAGATTTACCGTTGTGGCCTCAATCTTTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * * * *
26171619 TGCAATGTC-AGGAAGCAGGAGTCGCCGTTGTAGTTTCAATCTGTTCTGCTGCATCGTCTGAAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
*
26171683 TAAGATTCGTCGTTGTGGCCTCAATCTTTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * ** * *
26171717 TGCAATGTCAGGGAAGCAGGATTCGCTGTTGTAGCTTCAATTTGTTTTGTTGCATCGCCTGAAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
26171782 TGAGATTCGTCGTTGTGGCCTCAATCTTTTAAAT
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* *
26171816 TGCAATGTCGGGGAAGCAGGATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCTGGAAT
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAA-
* * * *
26171881 GTAATATTTGCCGTTGTGGCTTCAATCTTTTTAAT
65 GTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * * * * *
26171916 TGCAATGTCGAGGAAGCAAGATTTGCCATTATGGCTTCAATCTGTTCCACTGCA
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCA
26171970 CTGCCAGGGA
Statistics
Matches: 1031, Mismatches: 105, Indels: 17
0.89 0.09 0.01
Matches are distributed among these distances:
98 179 0.17
99 547 0.53
100 253 0.25
101 52 0.05
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (99 bp):
TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
Found at i:26171533 original size:296 final size:297
Alignment explanation
Indices: 26170725--26171969 Score: 1487
Period size: 296 Copynumber: 4.2 Consensus size: 297
26170715 TCTGTTTAAC
* * * * * * * * * *
26170725 TGCAATGTTGGGGAAGTAAGATTCGTCC-TCGTAGCTTCAATCTATTCCACTACACCACCAAGGA
1 TGCAATGTTGGGGAAGCAGGATTC-ACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC-TGG-
* * * ** * *
26170789 AAATAAGATTCGCCGTCGTGGCCTCAATCTATTAGTTTGCAATGTCGGGGAAG-TGAGATTCGTC
63 AAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAG-GATTCGCC
* * * * * * * *
26170853 GTCGTAGCTTCAA-CTATTCCACTACACCACCAAGGAAAATAAGATTCGCCGTCGTGGCCTCAAT
127 GTTGTAGCTTCAATCTATTCCGCTGCATCGCC--TGAAAGTAAGATTCGCCGTTGTGGCCTCAAT
** * * * * * * *
26170917 CTTTTAGTTTACAATGTCGGGGAAG-TGAGATTCACTGTCGTAGCTTCAATCTATTCCACTTCAC
190 CTTTTAAATTGCAATGTCGGGGAAGCAG-GATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAT
* * * *
26170981 CGCCTGGGAAGTAAGATTCGCCATTGTGGCTTCAATATTTTAATT
254 CGCCT-GGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * *
26171026 TACAATGTCGGGGAAGCAGGATTTGA-CGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAA
1 TGCAATGTTGGGGAAGCAGGA-TTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAA
*
26171090 GTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGTGGAAGCAGGATTCGCCGTT
65 GTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTT
* * *
26171155 GTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAGTAAGATTCGCCGTTGTGGCCACAATCTTTT
130 GTAGCTTCAATCTATTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTT
* * * * *
26171220 AAATTGCAATGTCGGGGAAGCAGGATTCGCCATTGTAGCTTCAATCTGTTCCGCTACGTCGCCTG
195 AAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCGCCTG
*
26171285 GAAGTAAGATTCGTCGTTGTGGCCTCAATCTTTTAAAT
260 GAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
26171323 TGCAATGTTGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
1 TGCAATGTTGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * *
26171388 TAAGATTCACCGTTGTGGCCTCAATC-TTTAAATTACAATGTCGGGGAAGCAGGATTCACCGTTG
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* *
26171452 TAGCTTCAATCTATTCCGCTGCATCGCCTGAAAGTAAAATTCACCGTTGTGGCCTCAATCTTTTA
131 TAGCTTCAATCTATTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
** * * *
26171517 AATTGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTATTCTGCTGTATCACCTAG
196 AATTGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCGCCTGG
**
26171582 AAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAAAT
261 AAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
** * * * * * *
26171619 TGCAATG-TCAGGAAGCAGGAGTCGCCGTTGTAGTTTCAATCTGTTCTGCTGCATCGTCTGAAAG
1 TGCAATGTTGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * *
26171683 TAAGATTCGTCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCAGGGAAGCAGGATTCGCTGTTG
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * ** * * *
26171748 TAGCTTCAATTTGTTTTGTTGCATCGCCTGAAAGTGAGATTCGTCGTTGTGGCCTCAATCTTTTA
131 TAGCTTCAATCTATTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
* *
26171813 AATTGCAATGTCGGGGAAGCAGGATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCTGG
196 AATTGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCGCCTGG
* * * *
26171878 AATGTAATATTTGCCGTTGTGGCTTCAATCTTTTTAAT
261 AA-GTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
* * * ** * * * *
26171916 TGCAATGTCGAGGAAGCAAGATTTGCCATTATGGCTTCAATCTGTTCCACTGCA
1 TGCAATGTTGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCA
26171970 CTGCCAGGGA
Statistics
Matches: 817, Mismatches: 118, Indels: 21
0.85 0.12 0.02
Matches are distributed among these distances:
295 73 0.09
296 346 0.42
297 155 0.19
298 115 0.14
299 67 0.08
300 17 0.02
301 42 0.05
302 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (297 bp):
TGCAATGTTGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
TAGCTTCAATCTATTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
AATTGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCATCGCCTGG
AAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAAT
Found at i:26171535 original size:197 final size:198
Alignment explanation
Indices: 26170725--26171969 Score: 1503
Period size: 197 Copynumber: 6.3 Consensus size: 198
26170715 TCTGTTTAAC
* * * * * * * * * *
26170725 TGCAATGTTGGGGAAGTAAGATTCGTCC-TCGTAGCTTCAATCTATTCCACTACACCACCAAGGA
1 TGCAATGTCGGGGAAGCAGGATTCG-CCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC-TGG-
* * * ** * *
26170789 AAATAAGATTCGCCGTCGTGGCCTCAATCTATTAGTTTGCAATGTCGGGGAAG-TGAGATTCGTC
63 AAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAG-GATTCGCC
* * * * * * * * *
26170853 GTCGTAGCTTCAA-CTATTCCACTACACCACCAAGGAAAATAAGATTCGCCGTCGTGGCCTCAAT
127 GTTGTAGCTTCAATCTGTTCCGCTGCATCGCC--TGAAAGTAAGATTCGCCGTTGTGGCCTCAAT
**
26170917 CTTTTAGTT
190 CTTTTAAAT
* * * * * * * * *
26170926 TACAATGTCGGGGAAG-TGAGATTCACTGTCGTAGCTTCAATCTATTCCACTTCACCGCCTGGGA
1 TGCAATGTCGGGGAAGCAG-GATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGA
* * * * * * *
26170990 AGTAAGATTCGCCATTGTGGCTTCAATATTTTAATTTACAATGTCGGGGAAGCAGGATTTGACGT
64 AGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGT
*
26171055 TGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTT
129 TGTAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTT
26171120 TAAAT
194 TAAAT
*
26171125 TGCAATGTCGTGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
26171190 TAAGATTCGCCGTTGTGGCCACAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCATTG
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * * *
26171255 TAGCTTCAATCTGTTCCGCTACGTCGCCTGGAAGTAAGATTCGTCGTTGTGGCCTCAATCTTTTA
131 TAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
26171320 AAT
196 AAT
* *
26171323 TGCAATGTTGGGGAAGCAGGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * *
26171388 TAAGATTCACCGTTGTGGCCTCAATC-TTTAAATTACAATGTCGGGGAAGCAGGATTCACCGTTG
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * *
26171452 TAGCTTCAATCTATTCCGCTGCATCGCCTGAAAGTAAAATTCACCGTTGTGGCCTCAATCTTTTA
131 TAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
26171517 AAT
196 AAT
* * * * *
26171520 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTATTCTGCTGTATCACCTAGAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
** * *
26171585 TAAGATTTACCGTTGTGGCCTCAATCTTTTAAATTGCAATGTC-AGGAAGCAGGAGTCGCCGTTG
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * * *
26171649 TAGTTTCAATCTGTTCTGCTGCATCGTCTGAAAGTAAGATTCGTCGTTGTGGCCTCAATCTTTTA
131 TAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
26171714 AAT
196 AAT
* * * ** * *
26171717 TGCAATGTCAGGGAAGCAGGATTCGCTGTTGTAGCTTCAATTTGTTTTGTTGCATCGCCTGAAAG
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * *
26171782 TGAGATTCGTCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTTGCCGTTG
66 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * * * *
26171847 TAGCTTCAATCTGTTCCACTGCATCGCCTGGAATGTAATATTTGCCGTTGTGGCTTCAATCTTTT
131 TAGCTTCAATCTGTTCCGCTGCATCGCCT-GAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTT
*
26171912 TAAT
195 AAAT
* * * * * * *
26171916 TGCAATGTCGAGGAAGCAAGATTTGCCATTATGGCTTCAATCTGTTCCACTGCA
1 TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCA
26171970 CTGCCAGGGA
Statistics
Matches: 907, Mismatches: 128, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
197 352 0.39
198 270 0.30
199 156 0.17
200 65 0.07
201 64 0.07
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (198 bp):
TGCAATGTCGGGGAAGCAGGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
TAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
AAT
Found at i:26172115 original size:44 final size:43
Alignment explanation
Indices: 26172067--26172204 Score: 104
Period size: 44 Copynumber: 3.1 Consensus size: 43
26172057 TAACCGAGAG
26172067 AGGCAAAGTTTGTGTCTTCGATCTACTTCGCTGTCATGGCAGGA
1 AGGCAAAGTTTGTGTCTTCGATCTACTTCGCTGTCA-GGCAGGA
* * * * * *
26172111 AGGC-AAGATTTGTTGTCTTC-AACTAGCTCCACT-ACA-ACCGAGA
1 AGGCAAAG-TTTG-TGTCTTCGATCTA-CTTCGCTGTCAGGCAG-GA
* * *
26172154 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGTA
1 -AGGCAAAGTTTGTGTCTTCGATCTACTTCGCTGTC-AGGCAGGA
26172199 AGGCAA
1 AGGCAA
26172205 GATCTGTTGT
Statistics
Matches: 69, Mismatches: 15, Indels: 20
0.66 0.14 0.19
Matches are distributed among these distances:
42 2 0.03
43 17 0.25
44 32 0.46
45 16 0.23
46 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (43 bp):
AGGCAAAGTTTGTGTCTTCGATCTACTTCGCTGTCAGGCAGGA
Found at i:26172125 original size:88 final size:88
Alignment explanation
Indices: 26171988--26172571 Score: 929
Period size: 88 Copynumber: 6.6 Consensus size: 88
26171978 GAAAGTAAGA
* * *
26171988 TTTGTTGTCTTTGATCTGCTCCACTGTCAA--CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT
1 TTTG-TGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT
* *
26172051 CCACTATAACCGAGAGAGGCAAAG
65 CCACTACAACCGAGAGAGGCAAGG
* * * *
26172075 TTTGTGTCTTCGATCTACTTCGCTGTCATGGCAGGAAGGCAAGATTTGTTGTCTTCAACTAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
26172140 CACTACAACCGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
*
26172163 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGTAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
26172228 CACTACAACCGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* * *
26172251 TTTGTGTCTTCGATCTGCTTCGCTATCAAGGTAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
26172316 CACTACAACCGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* *
26172339 TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
26172404 CACTACAACCGAGAGAGACAAGG
66 CACTACAACCGAGAGAGGCAAGG
* *
26172427 TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
* *
26172492 CACTACAACTGAGAGAGGCAATG
66 CACTACAACCGAGAGAGGCAAGG
* * * *
26172515 TTTGTGTATTCGATCTGCTTTGCTGTCAAGGCAGGAAAGCAAGATCTGATGTCTTCA
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCA
26172572 TTTATCTGTT
Statistics
Matches: 462, Mismatches: 33, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
86 20 0.04
87 4 0.01
88 438 0.95
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (88 bp):
TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
CACTACAACCGAGAGAGGCAAGG
Done.