Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 65 of 135
Found at i:26173721 original size:42 final size:42
Alignment explanation
Indices: 26173650--26173769 Score: 159
Period size: 42 Copynumber: 2.8 Consensus size: 42
26173640 GGTATAGCAA
* * * *
26173650 GATCACCGCATGCCCCAGTTTGATCAAAATTTGAGCTGCTCT
1 GATCACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
*
26173692 GATTACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
1 GATCACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
* * *
26173734 GATCGCCTCATGCCCCAATTTGATCCAAAATTTGAG
1 GATCACCTCATACCCCAATCTGAT-CAAAATTTGAG
26173770 TCGCACTTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 57 0.84
43 11 0.16
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (42 bp):
GATCACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
Found at i:26173868 original size:9 final size:9
Alignment explanation
Indices: 26173854--26173892 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
26173844 TCATTTTTAC
26173854 TTTTTCATT
1 TTTTTCATT
26173863 TTTTTCA--
1 TTTTTCATT
26173870 TTTTTCATT
1 TTTTTCATT
26173879 TTTTTCATT
1 TTTTTCATT
26173888 TTTTT
1 TTTTT
26173893 GTTTGACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.25
9 21 0.75
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTCATT
Found at i:26173873 original size:16 final size:16
Alignment explanation
Indices: 26173854--26173890 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
26173844 TCATTTTTAC
26173854 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
26173870 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
26173886 TTTTT
1 TTTTT
26173891 TTGTTTGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTCATTTTTTTCA
Found at i:26174750 original size:6 final size:6
Alignment explanation
Indices: 26174741--26174774 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
26174731 GACTTTGAAT
*
26174741 TTTTTA TTTTTG TTTTTG TTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
26174775 AGTCTGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.03, C:0.00, G:0.09, T:0.88
Consensus pattern (6 bp):
TTTTTG
Found at i:26178388 original size:24 final size:25
Alignment explanation
Indices: 26178360--26178421 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
26178350 TATGTTTTTA
*
26178360 TATTTTTATTACTTTGTTCACG-TT
1 TATTTTTATTACTTTATTCACGTTT
*
26178384 TATTTTGATTA-TTTATTCACGTTT
1 TATTTTTATTACTTTATTCACGTTT
*
26178408 TCATTTTTTTTACT
1 T-ATTTTTATTACT
26178422 CATTCATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 9 0.29
24 13 0.42
25 8 0.26
26 1 0.03
ACGTcount: A:0.18, C:0.11, G:0.06, T:0.65
Consensus pattern (25 bp):
TATTTTTATTACTTTATTCACGTTT
Found at i:26178402 original size:23 final size:24
Alignment explanation
Indices: 26178360--26178407 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
26178350 TATGTTTTTA
* *
26178360 TATTTTTATTACTTTGTTCACGTT
1 TATTTTGATTACTTTATTCACGTT
26178384 TATTTTGATTA-TTTATTCACGTT
1 TATTTTGATTACTTTATTCACGTT
26178407 T
1 T
26178408 TCATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.19, C:0.10, G:0.08, T:0.62
Consensus pattern (24 bp):
TATTTTGATTACTTTATTCACGTT
Found at i:26181588 original size:112 final size:107
Alignment explanation
Indices: 26181404--26181660 Score: 247
Period size: 112 Copynumber: 2.3 Consensus size: 107
26181394 ACATCAGAGT
* *
26181404 GTTTTAAAAGGTAAATATTTTTTTAGTAATTATTAATTATTTGTTTAGTGTTTATGGTTCATTAT
1 GTTTT-AAAGGT-AATATTTTTTTTGT-A--ATT-ATTATTTGTTTAGTGTTTATGGTTCATTAC
* * *
26181469 TAATTGTTTTATTTTGTGGGTTTAAGG-AGGAGAGGAGGCAGTAGCCAAA-TTG
60 TAATTGTTTGATTTTGTGGCTTT--GGAAGGAGAGGAAGCA--A--CAAATTTG
26181521 GTTTTAAAGGTAATATTTTTTCTTGTAATTATTATTTGTTTA-TGGTTT-TGGGTT-ACTTACTA
1 GTTTTAAAGGTAATATTTTTT-TTGTAATTATTATTTGTTTAGT-GTTTAT-GGTTCA-TTACTA
* *
26181583 TTTGTTTGATTTTGTGGCTTTGGAAGGAGAGGAAGCAACAAATTTT
62 ATTGTTTGATTTTGTGGCTTTGGAAGGAGAGGAAGCAACAAATTTG
*
26181629 ATTTTAAAGGTAA-ATTTTCTTTTGTAATTATT
1 GTTTTAAAGGTAATATTTT-TTTTGTAATTATT
26181661 TTTTTATTTG
Statistics
Matches: 125, Mismatches: 8, Indels: 24
0.80 0.05 0.15
Matches are distributed among these distances:
107 20 0.16
108 16 0.13
109 1 0.01
110 2 0.02
111 15 0.12
112 43 0.34
113 3 0.02
115 11 0.09
116 9 0.07
117 5 0.04
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (107 bp):
GTTTTAAAGGTAATATTTTTTTTGTAATTATTATTTGTTTAGTGTTTATGGTTCATTACTAATTG
TTTGATTTTGTGGCTTTGGAAGGAGAGGAAGCAACAAATTTG
Found at i:26181615 original size:116 final size:116
Alignment explanation
Indices: 26181404--26181615 Score: 255
Period size: 112 Copynumber: 1.9 Consensus size: 116
26181394 ACATCAGAGT
*
26181404 GTTTTAAAAGGTAAATATTTTTTTAGTAATTATTAATTATTTGTTTAGTGTTTATGGTTCATTAT
1 GTTTTAAAAGGTAAATATTTTTTTAGTAA-TATTAATTATTTGTTTAGTGTTTATGGTTCATTAC
* *
26181469 TAATTGTTTTATTTTGTGGGTTTAAGGAGGAGAGGAGGCAGTAGCCAAATTG
65 TAATTGTTTGATTTTGTGGCTTTAAGGAGGAGAGGAGGCAGTAGCCAAATTG
*
26181521 GTTTT-AAAGGT-AATATTTTTTCTTGT-A-ATT-ATTATTTGTTTA-TGGTTT-TGGGTT-ACT
1 GTTTTAAAAGGTAAATATTTTTT-TAGTAATATTAATTATTTGTTTAGT-GTTTAT-GGTTCA-T
*
26181578 TACTATTTGTTTGATTTTGTGGCTTT--GGAAGGAGAGGA
62 TACTAATTGTTTGATTTTGTGGCTTTAAGG-AGGAGAGGA
26181616 AGCAACAAAT
Statistics
Matches: 85, Mismatches: 5, Indels: 16
0.80 0.05 0.15
Matches are distributed among these distances:
110 2 0.02
111 12 0.14
112 43 0.51
113 3 0.04
115 11 0.13
116 9 0.11
117 5 0.06
ACGTcount: A:0.25, C:0.04, G:0.23, T:0.49
Consensus pattern (116 bp):
GTTTTAAAAGGTAAATATTTTTTTAGTAATATTAATTATTTGTTTAGTGTTTATGGTTCATTACT
AATTGTTTGATTTTGTGGCTTTAAGGAGGAGAGGAGGCAGTAGCCAAATTG
Found at i:26184772 original size:6 final size:6
Alignment explanation
Indices: 26184740--26184799 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
26184730 GGATTCTGAC
* * * * * *
26184740 TCATCA TCATCA TCTTCT TCTTCT TCATCT TCA-CC TCGAGCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC-ATCT TCATCT
26184788 TCATCT TCATCT
1 TCATCT TCATCT
26184800 CGTTCCTCCG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
5 3 0.07
6 40 0.87
7 3 0.07
ACGTcount: A:0.17, C:0.35, G:0.03, T:0.45
Consensus pattern (6 bp):
TCATCT
Found at i:26184783 original size:24 final size:24
Alignment explanation
Indices: 26184756--26184801 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
26184746 TCATCATCTT
*
26184756 CTTCTTCTTCATCTTCACCTCGAG
1 CTTCATCTTCATCTTCACCTCGAG
*
26184780 CTTCATCTTCATCTTCATCTCG
1 CTTCATCTTCATCTTCACCTCG
26184802 TTCCTCCGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.37, G:0.07, T:0.43
Consensus pattern (24 bp):
CTTCATCTTCATCTTCACCTCGAG
Found at i:26187408 original size:22 final size:23
Alignment explanation
Indices: 26187380--26187424 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26187370 CTGCAATCTT
26187380 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
26187402 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
26187425 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:26191507 original size:17 final size:18
Alignment explanation
Indices: 26191483--26191526 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
26191473 AAAATATTTC
*
26191483 AAAA-AAAAAACCAAAAG
1 AAAAGAAAAAACAAAAAG
*
26191500 -AAAGAAAAAAGAAAAAG
1 AAAAGAAAAAACAAAAAG
26191517 AAAAGAAAAA
1 AAAAGAAAAA
26191527 GGAGAGGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 11 0.48
18 9 0.39
ACGTcount: A:0.84, C:0.05, G:0.11, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAAACAAAAAG
Found at i:26191508 original size:22 final size:22
Alignment explanation
Indices: 26191483--26191524 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26191473 AAAATATTTC
*
26191483 AAAAAA-AAAACCAAAAGAAAG
1 AAAAAAGAAAAACAAAAGAAAG
*
26191504 AAAAAAGAAAAAGAAAAGAAA
1 AAAAAAGAAAAACAAAAGAAA
26191525 AAGGAGAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.83, C:0.05, G:0.12, T:0.00
Consensus pattern (22 bp):
AAAAAAGAAAAACAAAAGAAAG
Found at i:26191509 original size:11 final size:11
Alignment explanation
Indices: 26191495--26191527 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
26191485 AAAAAAAACC
26191495 AAAAGAAAGAA-
1 AAAAGAAA-AAG
26191506 AAAAGAAAAAG
1 AAAAGAAAAAG
26191517 AAAAGAAAAAG
1 AAAAGAAAAAG
26191528 GAGAGGCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 2 0.10
11 19 0.90
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:26192733 original size:88 final size:88
Alignment explanation
Indices: 26192570--26192758 Score: 227
Period size: 88 Copynumber: 2.1 Consensus size: 88
26192560 AAACTTCAGC
* * * * *
26192570 CTTATCTCCTTGAGAAACAGTGGAGTAGGTTGAAAATAGTAGATCTTTTCTTCTTGTATTGGTAG
1 CTTATCTCCTTGAGAAACAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGCAG
** * * *
26192635 TGAAGTAGATCGAAGATACTAGT
66 CAAAGCAGATCGAAGACACCAGT
* * * *
26192658 CTTGTCTCCTTGA-ACAGCAGTGGAGTAGGTTGAAGATGGCAGATCTTGTCTTCCTGTACTGGCA
1 CTTATCTCCTTGAGA-AACAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGCA
26192722 GCAAAGCAGATCGAAGACACCAGT
65 GCAAAGCAGATCGAAGACACCAGT
*
26192746 CTTATCGCCTTGA
1 CTTATCTCCTTGA
26192759 CGTTGCAATG
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
87 1 0.01
88 83 0.99
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (88 bp):
CTTATCTCCTTGAGAAACAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGCAG
CAAAGCAGATCGAAGACACCAGT
Found at i:26192997 original size:50 final size:50
Alignment explanation
Indices: 26192940--26193823 Score: 427
Period size: 50 Copynumber: 17.7 Consensus size: 50
26192930 ACAGTGGAAT
* * * * **
26192940 AGATTGAAGCCACAACAGTGGATCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTACATTGCAATTAAAA
* * ** * ** *
26192990 AGATTGAAGCCACAACGACGAATCTTACTT-CCTTAGCGGTGCAGTGGAAC
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTA-CATTGCAATTAAAA
* * * * *
26193040 AGATTGAAGCCACGACGGTGGATCTTGTTTCCCTAACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTACATTGCAATTAAAA
* * * * * * * *
26193090 AGATTGAGGCCACAACGGTGAATCTTACTT-CCTTAGCAGTACAGTGAAAT
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTA-CATTGCAATTAAAA
* * * **
26193140 AGATTGAAGCTACGACGGCGAATCTAATTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTACATTGCAATTAAAA
* * * ** * ** *
26193190 AGATTGAAGCCACAATGGAGAATCTTACTT-CCTTAGCGGTGCAGTGGAAC
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTA-CATTGCAATTAAAA
* **
26193240 AGATTGAAGCCA-AGACGGCGGATCTTATTTCCCCAACATTGCAATTAAAA
1 AGATTGAAGCCACA-ACGGCGAATCTTATTTCCCTTACATTGCAATTAAAA
* * * * ** * ** *
26193290 ATATTGAAGCCACAACAGCGAATCTTACTT-CCATAGCGGTGCAGTGGAAC
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTA-CATTGCAATTAAAA
* * * * * *
26193340 AGATTGAAGCCACGATGGTGGATCTTGTTTCCCTGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTACATTGCAATTAAAA
** * * * * * ** *
26193390 ATTTTGAAGCCACAACGGCAAATTTTACTT-CCTTAGCAGTGCAGTGGAAT
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTA-CATTGCAATTAAAA
* * * *
26193440 AGATTGAATCTACGACGGCGAAT-TTGATTT-CCTAGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTT-ATTTCCCT-TACATTGCAATTAAAA
* * * * * ** *
26193490 AGATTGAAGCCACAACGACGAATCTTACTTT--CTTAGAGGTGGAGTGGAAC
1 AGATTGAAGCCACAACGGCGAATCTTA-TTTCCCTTACA-TTGCAATTAAAA
* * * **
26193540 AGATTGAAGCTACGACGGCGAATCTGATTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTACATTGCAATTAAAA
** * * ** *
26193590 AGATTGAAGCCACAACGATGAATCTTACTTT--CTTA-GTGGTGCAGTGGAAC
1 AGATTGAAGCCACAACGGCGAATCTTA-TTTCCCTTACAT--TGCAATTAAAA
* * * * * * *
26193640 AGATTGAA-CCTACGACTGTGAAT-TTGATTT-TCTCGATATTGTAATTAAAA
1 AGATTGAAGCC-ACAACGGCGAATCTT-ATTTCCCT-TACATTGCAATTAAAA
* ***** * * * *
26193690 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACA
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTACATTGCAAT-TAAAA
** * * *
26193741 A-ATTGAAGCTGCGACGGCGAATCTGATTTTCCC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTA-TTTCCCTTACATTGCAATTAAAA
*
26193790 AGATTGAAGCCACAATGGCGAATCTTATTTCCCT
1 AGATTGAAGCCACAACGGCGAATCTTATTTCCCT
26193824 GGCGGTGTAG
Statistics
Matches: 591, Mismatches: 210, Indels: 66
0.68 0.24 0.08
Matches are distributed among these distances:
48 1 0.00
49 44 0.07
50 503 0.85
51 42 0.07
52 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGAATCTTATTTCCCTTACATTGCAATTAAAA
Found at i:26193081 original size:100 final size:100
Alignment explanation
Indices: 26192931--26193898 Score: 1158
Period size: 100 Copynumber: 9.7 Consensus size: 100
26192921 TTTGCCATTA
* * * * *
26192931 CAGTGGAATAGATTGAAGCCACAACAGTGGATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
26192996 AAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
66 AAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
* * **
26193031 CAGTGGAACAGATTGAAGCCACGACGGTGGATCTTGTTTCCCTAACATTGCAATTAAAAAGATTG
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
* ** * *
26193096 AGGCCACAACGGTGAATCTTACTTCCTTAGCAGTA
66 AAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
* * * **
26193131 CAGTGAAATAGATTGAAGCTACGACGGCGAATCTAATTTCCCCGACATTGCAATTAAAAAGATTG
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
*
26193196 AAGCCACAATGGA-GAATCTTACTTCCTTAGCGGTG
66 AAGCCACAA-CGACGAATCTTACTTCCTTAGCGGTG
* * * * *
26193231 CAGTGGAACAGATTGAAGCCAAGACGGCGGATCTTATTTCCCCAACATTGCAATTAAAAATATTG
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
*
26193296 AAGCCACAAC-AGCGAATCTTACTTCCATAGCGGTG
66 AAGCCACAACGA-CGAATCTTACTTCCTTAGCGGTG
* * * * **
26193331 CAGTGGAACAGATTGAAGCCACGATGGTGGATCTTGTTTCCCTGACATTGCAATTAAAAATTTTG
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
* * * *
26193396 AAGCCACAACGGCAAATTTTACTTCCTTAGCAGTG
66 AAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
* * * **
26193431 CAGTGGAATAGATTGAATCTACGACGGCGAAT-TTGATTTCCTAGACATTGCAATTAAAAAGATT
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTG-TTTCCCCGACATTGCAATTAAAAAGATT
* *
26193495 GAAGCCACAACGACGAATCTTACTTTCTTAGAGGTG
65 GAAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
* *
26193531 GAGTGGAACAGATTGAAGCTACGACGGCGAATC-TGATTTCCCCGACATTGCAATTAAAAAGATT
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTG-TTTCCCCGACATTGCAATTAAAAAGATT
* * *
26193595 GAAGCCACAACGATGAATCTTACTTTCTTAGTGGTG
65 GAAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
* * * * * *
26193631 CAGTGGAACAGATTGAA-CCTACGACTGTGAAT-TTGATTTTCTCGATATTGTAATTAAAAAGAT
1 CAGTGGAACAGATTGAAGCC-ACGACGGCGAATCTTG-TTTCCCCGACATTGCAATTAAAAAGAT
* * * *
26193694 TGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTG
64 TGAAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
* * ** *
26193731 TAGTGGAACAAATTGAAGCTGCGACGGCGAATC-TGATTTTCCCGACATTGCAATTAAAAAGATT
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTG-TTTCCCCGACATTGCAATTAAAAAGATT
* * * * *
26193795 GAAGCCACAATGGCGAATCTTATTTCCCTGGCGGTG
65 GAAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
* * * * * *
26193831 TAGTGGAACAGATCGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGTAGTTAAATAGATTG
1 CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
26193896 AAG
66 AAG
26193899 ACGGCGAATC
Statistics
Matches: 756, Mismatches: 101, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
98 1 0.00
99 4 0.01
100 747 0.99
101 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (100 bp):
CAGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
AAGCCACAACGACGAATCTTACTTCCTTAGCGGTG
Found at i:26193480 original size:300 final size:299
Alignment explanation
Indices: 26192931--26193898 Score: 1284
Period size: 300 Copynumber: 3.2 Consensus size: 299
26192921 TTTGCCATTA
* * * * *
26192931 CAGTGGAATAGATTGAAGCCACA-ACAGTGGATCTTGTTTCCCCGACATTGCAATTAAAAAGATT
1 CAGTGGAACAGATTGAAGCCA-AGACGGCGAATCTTATTTCCCCGACATTGCAATTAAAAAGATT
*
26192995 GAAGCCACAACGACGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCCACGACGGTG
65 GAAGCCACAACGACGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCCACGATGGTG
* * *
26193060 GATCTTGTTTCCCTAACATTGCAATTAAAAAGATTGAGGCCACAACGGTGAATCTTACTTCCTTA
130 GATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTA
* * *
26193125 GCAGTACAGTGAAATAGATTGAAGCTACGACGGCGAATCTAATTTCCCCGACATTGCAATTAAAA
195 GCAGTGCAGTGGAATAGATTGAAGCTACGACGGCGAATCTGATTT-CCCGACATTGCAATTAAAA
26193190 AGATTGAAGCCACAATGGAGAATCTTACTTCCTTAGCGGTG
259 AGATTGAAGCCACAATGGAGAATCTTACTTCCTTAGCGGTG
* * *
26193231 CAGTGGAACAGATTGAAGCCAAGACGGCGGATCTTATTTCCCCAACATTGCAATTAAAAATATTG
1 CAGTGGAACAGATTGAAGCCAAGACGGCGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTG
*
26193296 AAGCCACAAC-AGCGAATCTTACTTCCATAGCGGTGCAGTGGAACAGATTGAAGCCACGATGGTG
66 AAGCCACAACGA-CGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCCACGATGGTG
** * *
26193360 GATCTTGTTTCCCTGACATTGCAATTAAAAATTTTGAAGCCACAACGGCAAATTTTACTTCCTTA
130 GATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTA
* * *
26193425 GCAGTGCAGTGGAATAGATTGAATCTACGACGGCGAATTTGATTTCCTAGACATTGCAATTAAAA
195 GCAGTGCAGTGGAATAGATTGAAGCTACGACGGCGAATCTGATTTCC-CGACATTGCAATTAAAA
* * *
26193490 AGATTGAAGCCACAA-CGACGAATCTTACTTTCTTAGAGGTG
259 AGATTGAAGCCACAATGGA-GAATCTTACTTCCTTAGCGGTG
* * * *
26193531 GAGTGGAACAGATTGAAGCTACGACGGCGAATCTGATTTCCCCGACATTGCAATTAAAAAGATTG
1 CAGTGGAACAGATTGAAGCCAAGACGGCGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTG
* * *
26193596 AAGCCACAACGATGAATCTTACTTTCTTAGTGGTGCAGTGGAACAGATTGAA-CCTACGACT-GT
66 AAGCCACAACGACGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCC-ACGA-TGGT
* * * *
26193659 GAAT-TTGATTT-TCTCGATATTGTAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC
129 GGATCTTG-TTTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC
* * ** * * * *
26193722 CTGGTGGTGTAGTGGAACAAATTGAAGCTGCGACGGCGAATCTGATTTTCCCGACATTGCAATTA
192 TTAGCAGTGCAGTGGAATAGATTGAAGCTACGACGGCGAATCTGA-TTTCCCGACATTGCAATTA
* * * *
26193787 AAAAGATTGAAGCCACAATGGCGAATCTTATTTCCCTGGCGGTG
256 AAAAGATTGAAGCCACAATGGAGAATCTTACTTCCTTAGCGGTG
* * * * * * * *
26193831 TAGTGGAACAGATCGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGTAGTTAAATAGATTG
1 CAGTGGAACAGATTGAAGCCAAGACGGCGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTG
26193896 AAG
66 AAG
26193899 ACGGCGAATC
Statistics
Matches: 589, Mismatches: 68, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
299 13 0.02
300 568 0.96
301 8 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (299 bp):
CAGTGGAACAGATTGAAGCCAAGACGGCGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTG
AAGCCACAACGACGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCCACGATGGTGG
ATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTAG
CAGTGCAGTGGAATAGATTGAAGCTACGACGGCGAATCTGATTTCCCGACATTGCAATTAAAAAG
ATTGAAGCCACAATGGAGAATCTTACTTCCTTAGCGGTG
Found at i:26193883 original size:50 final size:50
Alignment explanation
Indices: 26193532--26193898 Score: 166
Period size: 50 Copynumber: 7.3 Consensus size: 50
26193522 TTAGAGGTGG
*
26193532 AGTGGAACAGATTGAAGCTACGACGGCGAATC-TGATTTCCCCGACATTGC
1 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTG-TTTCCCCGACATTGT
* ** * * * ** * *** *** *
26193582 AATTAAAAAGATTGAAGCCACAACGATGAATCTTACTTTCTTAG-TGGTGC
1 AGTGGAACAGATTGAAGCTACGACGGCGAATCTT-GTTTCCCCGACATTGT
* * * * * *
26193632 AGTGGAACAGATTGAACCTACGACTGTGAAT-TTGATTTTCTCGATATTGT
1 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTG-TTTCCCCGACATTGT
* ** * * * ** * ****
26193682 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGT
1 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGT
* * * *
26193732 AGTGGAACAAATTGAAGCTGCGACGGCGAATC-TGATTTTCCCGACATTGC
1 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTG-TTTCCCCGACATTGT
* ** * * * * * * * **
26193782 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTATTTCCCTGGCGGTGT
1 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGT
*
26193832 AGTGGAACAGATCGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGT
1 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGT
** *
26193882 AGTTAAATAGATTGAAG
1 AGTGGAACAGATTGAAG
26193899 ACGGCGAATC
Statistics
Matches: 212, Mismatches: 98, Indels: 14
0.65 0.30 0.04
Matches are distributed among these distances:
49 8 0.04
50 195 0.92
51 9 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTGT
Found at i:26193960 original size:44 final size:43
Alignment explanation
Indices: 26193905--26194026 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 43
26193895 GAAGACGGCG
* * * *
26193905 AATCTTATCTCCCTAAAGATGCAGTAGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATTAAA-ACAAT
* * * *
26193949 AATCCTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAATAAT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATTAAAACAAT
*
26193992 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 A-ATCTTATCTCCCTGAAGTTGCAGTAGAGTAGAT
26194027 CGCATTAGGT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 4 0.06
44 61 0.94
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATTAAAACAAT
Found at i:26194085 original size:44 final size:44
Alignment explanation
Indices: 26194032--26194591 Score: 211
Period size: 44 Copynumber: 12.8 Consensus size: 44
26194022 TAGATCGCAT
*
26194032 TAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAG
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* * *
26194076 TAGGTCTTATCCCCCTGAGGTTGCAGTGGGGCAGACTGA-AAATG
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAA-G
** * * ** * * *
26194120 GCGGATCTTATCTCTCTGAGGTTACAGTGGAATAGATTAAAGCT-AT
1 TAGG-TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-GAG-TAAG
** * * * * * *
26194166 TAATTC-TATTTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAA-
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-GAGTAAG
* * * * ** * * *
26194209 TAGATCTTATCTCTCTGAAGTTGCAGTAGAATAGA-T-CG-CAT
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* *
26194250 TAGGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACTGAATAAG
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* * * *
26194294 TAGGTCTTATCCCCCTGAGGTTGCAGTGGGGCAGACTGAATATGG
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTA-AG
** * * * * * *
26194339 CTTA--TCTTATCTTTCTAAGGGTGCAGTGGAGCAAATTAAAGCCAA-
1 --TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-GAG-TAAG
* * * * * * * * *
26194384 TA-ATCCTATTTCCCTAAAGTTGCAGTGGAGCTGATTAAAATAA-
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-GAGTAAG
* ** * * * * *
26194427 TAGATCTTATCTCTTTGAAGTTGCAGTAGAGTAGA-T-CG-CA-
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* *
26194467 TCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGATTGAGTAAG
1 T-AGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* * * * *
26194512 CAGGTCTTATCCCCCTCAAGTTGCAGTAGG-GCAGACTGAAG-ATGG
1 TAGGTCTTATCTCCCTGAGGTTGCAGT-GGAGCAGACTG-AGTA-AG
* ** *
26194557 CATATCTTATCTCCCTAAGGTTGCAGTGGAGCAGA
1 TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
26194592 TTAAAACCAA
Statistics
Matches: 381, Mismatches: 108, Indels: 53
0.70 0.20 0.10
Matches are distributed among these distances:
40 3 0.01
41 55 0.14
42 2 0.01
43 16 0.04
44 213 0.56
45 86 0.23
46 2 0.01
47 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (44 bp):
TAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
Found at i:26194284 original size:218 final size:218
Alignment explanation
Indices: 26193906--26194688 Score: 1152
Period size: 218 Copynumber: 3.6 Consensus size: 218
26193896 AAGACGGCGA
* * * * *
26193906 ATCTTATCTCCCTAAAGATGCAGTAGAGCAGATTAAAGCCAATAATCCTATCTCCTTGAAGTTGC
1 ATCTTATCTCTCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGC
**
26193971 AGTGGAGTAGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
66 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
26194036 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
131 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
**
26194101 GTGGGGCAGACTGAAAATGGCGG
196 GTGGGGCAGACTGAAAATGGCAT
* * ** * * * *
26194124 ATCTTATCTCTCTGAGGTTACAGTGGAATAGATTAAAGCTATTAATTCTATTTCCCTGAAGTTGC
1 ATCTTATCTCTCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGC
*
26194189 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAATAGATCGCATTAGG
66 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
* * *
26194254 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACTGAATAAGTAGGTCTTATCCCCCTGAGGTTGCA
131 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
* *
26194319 GTGGGGCAGACTGAATATGGCTT
196 GTGGGGCAGACTGAAAATGGCAT
* * * * *
26194342 ATCTTATCTTTCTAAGGGTGCAGTGGAGCAAATTAAAGCCAATAATCCTATTTCCCTAAAGTTGC
1 ATCTTATCTCTCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGC
* * *
26194407 AGTGGAGCTGATTAAAATAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGTAGATCGCATCAGG
66 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
* * * *
26194472 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGATTGAGTAAGCAGGTCTTATCCCCCTCAAGTTGCA
131 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
* *
26194537 GTAGGGCAGACTGAAGATGGCAT
196 GTGGGGCAGACTGAAAATGGCAT
* * *
26194560 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAACCAATAATCCCATCTCCCTGAAGTTGC
1 ATCTTATCTCTCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGC
* * * * * *
26194625 AGCGGAGTGGATTAAAATGATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGGTCGCATTAG
66 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAG
26194689 ATTTTTCTCT
Statistics
Matches: 501, Mismatches: 64, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
218 501 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (218 bp):
ATCTTATCTCTCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGC
AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
GTGGGGCAGACTGAAAATGGCAT
Found at i:26194319 original size:85 final size:88
Alignment explanation
Indices: 26194032--26194320 Score: 241
Period size: 89 Copynumber: 3.3 Consensus size: 88
26194022 TAGATCGCAT
* ** ** * * * *
26194032 TAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAG-TAAGTAGGTCTTATCCCCCTGAGG
1 TAGGTCTTATCTCTCTGAGGTTGCAGTAGAATAGATTAAGCT-ATTAGGTCTTATCTCCCTGAGG
*
26194096 TTGCAGTGGGGCAGACTGAA-AATG
65 TTGCAGTGGAGCAGACTGAATAA-G
** * * ** * *
26194120 GCGGATCTTATCTCTCTGAGGTTACAGTGGAATAGATTAAAGCTATTAATTC-TATTTCCCTGAA
1 TAGG-TCTTATCTCTCTGAGGTTGCAGTAGAATAGATT-AAGCTATTAGGTCTTATCTCCCTGAG
* * *
26194184 GTTGCAGTGGAGCGGATTAAAATAA-
64 GTTGCAGTGGAGCAGACT-GAATAAG
* * *
26194209 TAGATCTTATCTCTCTGAAGTTGCAGTAGAATAGA-T-CGC-ATTAGGTCTTATCTCCCTGAGGT
1 TAGGTCTTATCTCTCTGAGGTTGCAGTAGAATAGATTAAGCTATTAGGTCTTATCTCCCTGAGGT
*
26194271 TACAGTGGAGCAGACTGAATAAG
66 TGCAGTGGAGCAGACTGAATAAG
* *
26194294 TAGGTCTTATCCCCCTGAGGTTGCAGT
1 TAGGTCTTATCTCTCTGAGGTTGCAGT
26194321 GGGGCAGACT
Statistics
Matches: 156, Mismatches: 38, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
84 11 0.07
85 50 0.32
87 1 0.01
88 30 0.19
89 52 0.33
90 9 0.06
91 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (88 bp):
TAGGTCTTATCTCTCTGAGGTTGCAGTAGAATAGATTAAGCTATTAGGTCTTATCTCCCTGAGGT
TGCAGTGGAGCAGACTGAATAAG
Found at i:26194657 original size:44 final size:43
Alignment explanation
Indices: 26194560--26194670 Score: 107
Period size: 44 Copynumber: 2.5 Consensus size: 43
26194550 AAGATGGCAT
*
26194560 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAACCAATA
1 ATCTTATCTCCCTAA-GTTGCAGCGGAGCAGATTAAAACCAATA
** ** **
26194604 ATCCCATCTCCCTGAAGTTGCAGCGGAGTGGATTAAAA-TGATA
1 ATCTTATCTCCCT-AAGTTGCAGCGGAGCAGATTAAAACCAATA
*
26194647 GATCTTATCTCTCTAAAGTTGCAG
1 -ATCTTATCTCCCT-AAGTTGCAG
26194671 TAGAGCAGGT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
43 3 0.06
44 49 0.91
45 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (43 bp):
ATCTTATCTCCCTAAGTTGCAGCGGAGCAGATTAAAACCAATA
Found at i:26195209 original size:24 final size:22
Alignment explanation
Indices: 26195168--26195232 Score: 77
Period size: 21 Copynumber: 3.1 Consensus size: 22
26195158 ATTCTTCAAG
26195168 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
26195187 GATATGCAATCTTAG-ATATGAT
1 GATATGCAATCTTAGAAGAT-AT
26195209 -ATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
26195230 GAT
1 GAT
26195233 TTTTAATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 13 0.33
21 19 0.49
22 7 0.18
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.35
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:26195214 original size:21 final size:19
Alignment explanation
Indices: 26195168--26195223 Score: 94
Period size: 19 Copynumber: 2.8 Consensus size: 19
26195158 ATTCTTCAAG
26195168 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26195187 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26195206 GATATATGCAATCTTAGA
1 G--ATATGCAATCTTAGA
26195224 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 20 0.57
21 15 0.43
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26196760 original size:61 final size:61
Alignment explanation
Indices: 26196664--26196787 Score: 212
Period size: 61 Copynumber: 2.0 Consensus size: 61
26196654 TTTTTTTGAA
* *
26196664 TTTCGTGGACCAAAATCGTTGTTTTAATAAAGTCAAATCGCTTATTAAAAATAATCATTTT
1 TTTCGTGGACCAAAATCGTTATTTTAATAAAGTCAAATCGCTTATTAAAAATAATCACTTT
* *
26196725 TTTCGTGGACCAAAATCGTTATTTTAATAATGTCAAATCGCTTATTAAAAATATTCACTTT
1 TTTCGTGGACCAAAATCGTTATTTTAATAAAGTCAAATCGCTTATTAAAAATAATCACTTT
26196786 TT
1 TT
26196788 GAGGTGACCC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (61 bp):
TTTCGTGGACCAAAATCGTTATTTTAATAAAGTCAAATCGCTTATTAAAAATAATCACTTT
Found at i:26197930 original size:30 final size:30
Alignment explanation
Indices: 26197869--26197930 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
26197859 GGTTGGGAGG
* **
26197869 GGAGTAAAAGTTTTTGGGGGAAAGTGGAAA
1 GGAGTAAAAGTTTTTGGGGAAAAGTAAAAA
26197899 GGAGTAAAAG-TTTTGAGGGAAAAGTAAAAA
1 GGAGTAAAAGTTTTTG-GGGAAAAGTAAAAA
26197929 GG
1 GG
26197931 TTTGGGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (30 bp):
GGAGTAAAAGTTTTTGGGGAAAAGTAAAAA
Found at i:26197986 original size:9 final size:9
Alignment explanation
Indices: 26197972--26198008 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26197962 TATAGTTTGA
26197972 TATTCGAAT
1 TATTCGAAT
26197981 TATTCGAAT
1 TATTCGAAT
*
26197990 TATTCGAGT
1 TATTCGAAT
26197999 TATTCGAAT
1 TATTCGAAT
26198008 T
1 T
26198009 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26198080 original size:9 final size:9
Alignment explanation
Indices: 26198063--26198093 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26198053 TTGAGTTGAT
26198063 TCGAATAAC
1 TCGAATAAC
*
26198072 TCGATTAAC
1 TCGAATAAC
26198081 TCGAATAAC
1 TCGAATAAC
26198090 TCGA
1 TCGA
26198094 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:26201430 original size:21 final size:21
Alignment explanation
Indices: 26201399--26201452 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
26201389 AAAATAAATA
26201399 TAATATATTTTAATTT-ATATT
1 TAAT-TATTTTAATTTAATATT
26201420 TATATTATTTTAATTTAATATT
1 TA-ATTATTTTAATTTAATATT
*
26201442 TAATAATTTTA
1 TAATTATTTTA
26201453 TTTCTTAGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TAATTATTTTAATTTAATATT
Found at i:26202699 original size:18 final size:19
Alignment explanation
Indices: 26202671--26202725 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
26202661 CTAATTAAGT
*
26202671 AATAACTCTATTTTAATTA
1 AATAACACTATTTTAATTA
* * *
26202690 AATAA-ACTATTCTCATTT
1 AATAACACTATTTTAATTA
*
26202708 AATAACTCTATTTTAATT
1 AATAACACTATTTTAATT
26202726 TTAAAGATAA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (19 bp):
AATAACACTATTTTAATTA
Found at i:26202718 original size:19 final size:19
Alignment explanation
Indices: 26202670--26202726 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 19
26202660 TCTAATTAAG
*
26202670 TAATAACTCTATTTTAATT
1 TAATAACTCTATTCTAATT
* * *
26202689 AAATAA-ACTATTCTCATT
1 TAATAACTCTATTCTAATT
*
26202707 TAATAACTCTATTTTAATT
1 TAATAACTCTATTCTAATT
26202726 T
1 T
26202727 TAAAGATAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTCTAATT
Found at i:26202791 original size:18 final size:18
Alignment explanation
Indices: 26202770--26202804 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26202760 AGTAATAACT
*
26202770 CTATTTTAATTTAATAAA
1 CTATTCTAATTTAATAAA
*
26202788 CTATTCTCATTTAATAA
1 CTATTCTAATTTAATAA
26202805 NNNNNNNNNN
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (18 bp):
CTATTCTAATTTAATAAA
Found at i:26203853 original size:16 final size:17
Alignment explanation
Indices: 26203832--26203882 Score: 68
Period size: 16 Copynumber: 2.9 Consensus size: 17
26203822 GTTTTTTTGG
26203832 TATTTTTAAT-ATTTTT
1 TATTTTTAATAATTTTT
26203848 TATTTTTAATAATTTTT
1 TATTTTTAATAATTTTT
*
26203865 TAAATTTTAAGTAATTTT
1 T-ATTTTTAA-TAATTTT
26203883 GTTAAGTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
16 10 0.32
17 7 0.23
18 7 0.23
19 7 0.23
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTTTTAATAATTTTT
Found at i:26210154 original size:34 final size:34
Alignment explanation
Indices: 26210107--26210175 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
26210097 CTATATTTCG
*
26210107 TCTGATTTATTTCATTACATCCTCACACCAAGTA
1 TCTGATTTATTTCATTACATCATCACACCAAGTA
* *
26210141 TCTGATTTCTTTCATTACATCATTACACCAAGTA
1 TCTGATTTATTTCATTACATCATCACACCAAGTA
26210175 T
1 T
26210176 GGTCACCCGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.41
Consensus pattern (34 bp):
TCTGATTTATTTCATTACATCATCACACCAAGTA
Found at i:26210924 original size:18 final size:18
Alignment explanation
Indices: 26210903--26210969 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
26210893 CCTCACTTGT
26210903 ATCTTCTTCCTCAGTCAC
1 ATCTTCTTCCTCAGTCAC
* *
26210921 ATCTTCTTCTTCA-TCTGC
1 ATCTTCTTCCTCAGTC-AC
* * *
26210939 ATCTTCTTCCTCGGCCAT
1 ATCTTCTTCCTCAGTCAC
26210957 ATCTTCTTCCTCA
1 ATCTTCTTCCTCA
26210970 TCTGCACCTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
17 2 0.05
18 36 0.92
19 1 0.03
ACGTcount: A:0.13, C:0.37, G:0.06, T:0.43
Consensus pattern (18 bp):
ATCTTCTTCCTCAGTCAC
Found at i:26210950 original size:36 final size:36
Alignment explanation
Indices: 26210903--26210980 Score: 111
Period size: 36 Copynumber: 2.2 Consensus size: 36
26210893 CCTCACTTGT
* *
26210903 ATCTTCTTCCTCAGTCACATCTTCTTCTTCATCTGC
1 ATCTTCTTCCTCAGCCACATCTTCTTCCTCATCTGC
* *
26210939 ATCTTCTTCCTCGGCCATATCTTCTTCCTCATCTGC
1 ATCTTCTTCCTCAGCCACATCTTCTTCCTCATCTGC
*
26210975 ACCTTC
1 ATCTTC
26210981 ATTGTCCCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.13, C:0.38, G:0.06, T:0.42
Consensus pattern (36 bp):
ATCTTCTTCCTCAGCCACATCTTCTTCCTCATCTGC
Found at i:26213761 original size:31 final size:31
Alignment explanation
Indices: 26213726--26213894 Score: 122
Period size: 31 Copynumber: 5.3 Consensus size: 31
26213716 ACTGAATTCT
26213726 TGAAAAGGTTATATCCAAAACGAATATCAAA
1 TGAAAAGGTTATATCCAAAACGAATATCAAA
* * * ** * *
26213757 TGAAAAGGTTGTTACCCTAAAAAGGTTAACATA
1 TGAAAAGGTT-ATATCC-AAAACGAATATCAAA
* *
26213790 TGAAAAGGTTATATCGAAAACGAATATCTAA
1 TGAAAAGGTTATATCCAAAACGAATATCAAA
* * * * ** * *
26213821 TGAAAATGTTGTTACCCTAAAAGGGTTAACATA
1 TGAAAAGGTT-ATATCC-AAAACGAATATCAAA
* * *
26213854 TGAAAAAGTTATATTCGAAACGAATATCAAA
1 TGAAAAGGTTATATCCAAAACGAATATCAAA
26213885 TGAAAAGGTT
1 TGAAAAGGTT
26213895 GAAAAGGTTG
Statistics
Matches: 97, Mismatches: 37, Indels: 8
0.68 0.26 0.06
Matches are distributed among these distances:
31 46 0.47
32 13 0.13
33 38 0.39
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.27
Consensus pattern (31 bp):
TGAAAAGGTTATATCCAAAACGAATATCAAA
Found at i:26213798 original size:33 final size:33
Alignment explanation
Indices: 26213756--26213859 Score: 97
Period size: 33 Copynumber: 3.2 Consensus size: 33
26213746 CGAATATCAA
26213756 ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
1 ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
* * * * ** *
26213789 ATGAAAAGGTT-ATA-TCGAAAACGAATATC-T
1 ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
* *
26213819 AATGAAAATGTTGTTACCCTAAAAGGGTTAACAT
1 -ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
26213853 ATGAAAA
1 ATGAAAA
26213860 AGTTATATTC
Statistics
Matches: 52, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
30 1 0.02
31 19 0.37
32 4 0.08
33 27 0.52
34 1 0.02
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.27
Consensus pattern (33 bp):
ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
Found at i:26213832 original size:64 final size:64
Alignment explanation
Indices: 26213726--26213895 Score: 279
Period size: 64 Copynumber: 2.7 Consensus size: 64
26213716 ACTGAATTCT
*
26213726 TGAAAAGGTTATATCCAAAACGAATATCAAATGAAAAGGTTGTTACCCTAAAAAGGTTAACATA
1 TGAAAAGGTTATATCGAAAACGAATATCAAATGAAAAGGTTGTTACCCTAAAAAGGTTAACATA
* * *
26213790 TGAAAAGGTTATATCGAAAACGAATATCTAATGAAAATGTTGTTACCCTAAAAGGGTTAACATA
1 TGAAAAGGTTATATCGAAAACGAATATCAAATGAAAAGGTTGTTACCCTAAAAAGGTTAACATA
*
26213854 TGAAAAAGTTATATTCG-AAACGAATATCAAATGAAAAGGTTG
1 TGAAAAGGTTATA-TCGAAAACGAATATCAAATGAAAAGGTTG
26213896 AAAAGGTTGT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
64 95 0.97
65 3 0.03
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (64 bp):
TGAAAAGGTTATATCGAAAACGAATATCAAATGAAAAGGTTGTTACCCTAAAAAGGTTAACATA
Found at i:26220895 original size:15 final size:15
Alignment explanation
Indices: 26220863--26220896 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26220853 AAAAAACCCC
*
26220863 TAAACCTAAAAACCT
1 TAAACCTAAAAACAT
*
26220878 TAAACCTAAAAATAT
1 TAAACCTAAAAACAT
26220893 TAAA
1 TAAA
26220897 AACCTTAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.18, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAACCTAAAAACAT
Found at i:26220901 original size:24 final size:24
Alignment explanation
Indices: 26220869--26220924 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
26220859 CCCCTAAACC
* *
26220869 TAAAAACCTTAAACCTAAAAATAT
1 TAAAAACCTTAAACCTAAAAAAAA
*
26220893 TAAAAACCTTAAACTTAAAAAAAA
1 TAAAAACCTTAAACCTAAAAAAAA
26220917 TAAAAACC
1 TAAAAACC
26220925 CTAACCTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.62, C:0.16, G:0.00, T:0.21
Consensus pattern (24 bp):
TAAAAACCTTAAACCTAAAAAAAA
Found at i:26222947 original size:130 final size:131
Alignment explanation
Indices: 26222783--26223048 Score: 516
Period size: 130 Copynumber: 2.0 Consensus size: 131
26222773 TTTATTAGTA
*
26222783 AAATATTTAATTTATCACTCAACTAAAAATTTATTTTAATATATTTTAATGTATTTTAATTTTAT
1 AAATCTTTAATTTATCACTCAACTAAAAATTTATTTTAATATATTTTAATGTATTTTAATTTTAT
26222848 TATGGACACTTTATTACCTTCATCAGTTGTATATATATTATTTAAATTTCTGACTGAGTTTGTGT
66 TATGGACACTTTATTACCTTCATCAGTTGTATATATATTATTTAAATTTCTGACTGAGTTTGTGT
26222913 T
131 T
26222914 AAATCTTTAATTTAT-ACTCAACTAAAAATTTATTTTAATATATTTTAATGTATTTTAATTTTAT
1 AAATCTTTAATTTATCACTCAACTAAAAATTTATTTTAATATATTTTAATGTATTTTAATTTTAT
26222978 TATGGACACTTTATTACCTTCATCAGTTGTATATATATTATTTAAATTTCTGACTGAGTTTGTGT
66 TATGGACACTTTATTACCTTCATCAGTTGTATATATATTATTTAAATTTCTGACTGAGTTTGTGT
26223043 T
131 T
26223044 AAATC
1 AAATC
26223049 GGACACCAAC
Statistics
Matches: 134, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
130 120 0.90
131 14 0.10
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.50
Consensus pattern (131 bp):
AAATCTTTAATTTATCACTCAACTAAAAATTTATTTTAATATATTTTAATGTATTTTAATTTTAT
TATGGACACTTTATTACCTTCATCAGTTGTATATATATTATTTAAATTTCTGACTGAGTTTGTGT
T
Found at i:26227654 original size:16 final size:16
Alignment explanation
Indices: 26227629--26227666 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
26227619 ATTTTTGTTC
26227629 AGAC-GTGTGAGGACA
1 AGACTGTGTGAGGACA
26227644 AGACTGTGTGAGGACA
1 AGACTGTGTGAGGACA
26227660 AGACTGT
1 AGACTGT
26227667 CTAAGAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.32, C:0.13, G:0.37, T:0.18
Consensus pattern (16 bp):
AGACTGTGTGAGGACA
Found at i:26238812 original size:13 final size:13
Alignment explanation
Indices: 26238794--26238822 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26238784 GAAACCAAAA
26238794 AAATTGTTTTGGG
1 AAATTGTTTTGGG
26238807 AAATTGTTTTGGG
1 AAATTGTTTTGGG
26238820 AAA
1 AAA
26238823 AGATTTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (13 bp):
AAATTGTTTTGGG
Found at i:26242356 original size:32 final size:28
Alignment explanation
Indices: 26242293--26242351 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
26242283 TACAAAGATA
26242293 CACCATTTCTCTCTCTCCTGCCTATGTT
1 CACCATTTCTCTCTCTCCTGCCTATGTT
26242321 CACCATTTCTCTCTCTCCTGCCTATGTT
1 CACCATTTCTCTCTCTCCTGCCTATGTT
26242349 CAC
1 CAC
26242352 TCACCCACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.12, C:0.41, G:0.07, T:0.41
Consensus pattern (28 bp):
CACCATTTCTCTCTCTCCTGCCTATGTT
Found at i:26251829 original size:15 final size:15
Alignment explanation
Indices: 26251809--26251842 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
26251799 TAAATAATGC
26251809 TTACATTATATTCTA
1 TTACATTATATTCTA
*
26251824 TTACATTATATTTTA
1 TTACATTATATTCTA
26251839 TTAC
1 TTAC
26251843 TCAAAGTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (15 bp):
TTACATTATATTCTA
Found at i:26253181 original size:28 final size:30
Alignment explanation
Indices: 26253148--26253203 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
26253138 ATAAAAATTT
*
26253148 AGTT-AATTATAAAATATTTTA-ATTCTTA
1 AGTTAAATTATAAAATACTTTATATTCTTA
*
26253176 AGTTAAATTATAAATTACTTTATATTCT
1 AGTTAAATTATAAAATACTTTATATTCT
26253204 AATATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 15 0.62
30 5 0.21
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (30 bp):
AGTTAAATTATAAAATACTTTATATTCTTA
Found at i:26254610 original size:25 final size:25
Alignment explanation
Indices: 26254581--26254630 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
26254571 ATTTTTTTCT
*
26254581 AAAATTTAATAAAATTAATATTTTA
1 AAAATATAATAAAATTAATATTTTA
* * *
26254606 AAAATATAATTAATTTAATTTTTTA
1 AAAATATAATAAAATTAATATTTTA
26254631 TTATAATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
AAAATATAATAAAATTAATATTTTA
Found at i:26257935 original size:18 final size:18
Alignment explanation
Indices: 26257897--26257932 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26257887 TTTCGAATCG
*
26257897 TCTTTCTTCTTCTTCTGT
1 TCTTTCTACTTCTTCTGT
26257915 TCTTTCTACTTC-TCTGT
1 TCTTTCTACTTCTTCTGT
26257932 T
1 T
26257933 TCTCAAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.03, C:0.28, G:0.06, T:0.64
Consensus pattern (18 bp):
TCTTTCTACTTCTTCTGT
Found at i:26259027 original size:19 final size:19
Alignment explanation
Indices: 26259003--26259040 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26258993 TTGGCCACGT
*
26259003 TGGGCTGAAATGGG-TCGTG
1 TGGGCTCAAA-GGGCTCGTG
26259022 TGGGCTCAAAGGGCTCGTG
1 TGGGCTCAAAGGGCTCGTG
26259041 GGCCTCACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.16, C:0.16, G:0.45, T:0.24
Consensus pattern (19 bp):
TGGGCTCAAAGGGCTCGTG
Found at i:26259235 original size:26 final size:27
Alignment explanation
Indices: 26259163--26259295 Score: 141
Period size: 27 Copynumber: 5.0 Consensus size: 27
26259153 TGACTATTTT
* *
26259163 TGTAATGCCCCTATAGGGTAAAATAAC
1 TGTAATGCCCCTGTAGGGTAAAATGAC
*
26259190 TGTAATGCCCCTGTAAGGTAAAATGAC
1 TGTAATGCCCCTGTAGGGTAAAATGAC
* *
26259217 TATAATG-CCCTGTAGGGTAAAAT-AA
1 TGTAATGCCCCTGTAGGGTAAAATGAC
**
26259242 TCGTAATGCCCCTGTAAAGTAAAATGAC
1 T-GTAATGCCCCTGTAGGGTAAAATGAC
*
26259270 CGTAATG-CCCTGGT-GGGT-AAATGAC
1 TGTAATGCCCCT-GTAGGGTAAAATGAC
26259295 T
1 T
26259296 ATTTTTGCCC
Statistics
Matches: 88, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
25 9 0.10
26 26 0.30
27 52 0.59
28 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
TGTAATGCCCCTGTAGGGTAAAATGAC
Found at i:26259236 original size:53 final size:53
Alignment explanation
Indices: 26259165--26259290 Score: 175
Period size: 53 Copynumber: 2.4 Consensus size: 53
26259155 ACTATTTTTG
* * *
26259165 TAATGCCCCTATAGGGTAAAATAA-CTGTAATGCCCCTGTAAGGTAAAATGACTA
1 TAATG-CCCTGTAGGGTAAAATAATC-GTAATGCCCCTGTAAAGTAAAATGACCA
*
26259219 TAATGCCCTGTAGGGTAAAATAATCGTAATGCCCCTGTAAAGTAAAATGACCG
1 TAATGCCCTGTAGGGTAAAATAATCGTAATGCCCCTGTAAAGTAAAATGACCA
26259272 TAATGCCCTGGT-GGGTAAA
1 TAATGCCCT-GTAGGGTAAA
26259291 TGACTATTTT
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
53 58 0.88
54 8 0.12
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (53 bp):
TAATGCCCTGTAGGGTAAAATAATCGTAATGCCCCTGTAAAGTAAAATGACCA
Found at i:26259372 original size:24 final size:24
Alignment explanation
Indices: 26259316--26259397 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 24
26259306 CTTGAGGTCA
* * * *
26259316 AATGATTGTTTTATCTGTG-GTTA
1 AATGACTGATTTATCTGTGATTTG
*
26259339 AATGACTGATTTGTCTGTG-TTTGG
1 AATGACTGATTTATCTGTGATTT-G
*
26259363 TATGACTGATTTATCTGTGATTTG
1 AATGACTGATTTATCTGTGATTTG
26259387 AATGACTGATT
1 AATGACTGATT
26259398 CTGAGCATGA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 18 0.37
24 28 0.57
25 3 0.06
ACGTcount: A:0.22, C:0.07, G:0.23, T:0.48
Consensus pattern (24 bp):
AATGACTGATTTATCTGTGATTTG
Found at i:26259509 original size:27 final size:27
Alignment explanation
Indices: 26259471--26259525 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
26259461 TACTATAGTA
*
26259471 GTGGCTCTGCCACA-ATCACTGTTACTG
1 GTGGCTCTGCCACATAT-ACTATTACTG
26259498 GTGGCT-TGGCCACATATACTATTACTG
1 GTGGCTCT-GCCACATATACTATTACTG
26259525 G
1 G
26259526 CAGCTTTGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 1 0.04
27 22 0.88
28 2 0.08
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (27 bp):
GTGGCTCTGCCACATATACTATTACTG
Found at i:26259531 original size:27 final size:27
Alignment explanation
Indices: 26259479--26259531 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
26259469 TAGTGGCTCT
* **
26259479 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
26259506 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
26259532 TGCTGTGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:26259551 original size:26 final size:26
Alignment explanation
Indices: 26259513--26259578 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
26259503 TTGGCCACAT
* *
26259513 ATACTATTACTGGCAGCTTTGCTGTG
1 ATACTATTGCTGGCAGCTTTGCTGCG
26259539 ATACTATTGCTGGCAGCTTTGCTGCG
1 ATACTATTGCTGGCAGCTTTGCTGCG
* *
26259565 ATGCTATTGATGGC
1 ATACTATTGCTGGC
26259579 TTTGTATCGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.36
Consensus pattern (26 bp):
ATACTATTGCTGGCAGCTTTGCTGCG
Found at i:26259613 original size:32 final size:32
Alignment explanation
Indices: 26259572--26259809 Score: 189
Period size: 32 Copynumber: 7.4 Consensus size: 32
26259562 GCGATGCTAT
* * *
26259572 TGATGGCTTTGTATCGGTCATAGTACCATTAC
1 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
26259604 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
1 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
* * *
26259636 TGATGTCTTTGTGCCGATCATATTACCGTTAC
1 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
* * * * *
26259668 CGATGGCTGTGTGTCAATCAT-TTCACTGTTAC
1 TGATGGCTTTGTGTCGATCATAGT-ACCGTTAC
* * * *
26259700 TGATGG-TTGTGTGCCTATCATA-TACTGCTAC
1 TGATGGCTT-TGTGTCGATCATAGTACCGTTAC
* * *
26259731 TGATGCCTTTGTGCCGATCAT-GTTACCATTAC
1 TGATGGCTTTGTGTCGATCATAG-TACCGTTAC
* * * *
26259763 TGATGGCGCTGTGTGCCGATCATA-TCACTGCTAC
1 TGAT-G-GCTTTGTGTCGATCATAGT-ACCGTTAC
26259797 TGATGGCTTTGTG
1 TGATGGCTTTGTG
26259810 CCAATCACAT
Statistics
Matches: 168, Mismatches: 28, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
31 26 0.15
32 116 0.69
33 3 0.02
34 23 0.14
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.37
Consensus pattern (32 bp):
TGATGGCTTTGTGTCGATCATAGTACCGTTAC
Found at i:26259673 original size:64 final size:64
Alignment explanation
Indices: 26259601--26259809 Score: 226
Period size: 64 Copynumber: 3.2 Consensus size: 64
26259591 ATAGTACCAT
* *
26259601 TACTGATGGCTTTGTGTCGATCATAGTACCGTTACTGAT-GTCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGTCGATCAT-GTACCGTTACTGATGGTCTGTGTGCCGATCATATTACCGC
* * * * * * *
26259665 TACCGATGGCTGTGTGTCAATCATTTCACTGTTACTGATGGT-TGTGTGCCTATCATA-TACTGC
1 TACTGATGGCTTTGTGTCGATCATGT-ACCGTTACTGATGGTCTGTGTGCCGATCATATTACCGC
* * * * * *
26259728 TACTGATGCCTTTGTGCCGATCATGTTACCATTACTGATGGCGCTGTGTGCCGATCATATCACTG
1 TACTGATGGCTTTGTGTCGATCATG-TACCGTTACTGATGG-TCTGTGTGCCGATCATATTACCG
26259793 C
64 C
26259794 TACTGATGGCTTTGTG
1 TACTGATGGCTTTGTG
26259810 CCAATCACAT
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
63 36 0.31
64 46 0.39
65 16 0.14
66 20 0.17
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (64 bp):
TACTGATGGCTTTGTGTCGATCATGTACCGTTACTGATGGTCTGTGTGCCGATCATATTACCGC
Found at i:26259751 original size:95 final size:98
Alignment explanation
Indices: 26259600--26259816 Score: 280
Period size: 95 Copynumber: 2.2 Consensus size: 98
26259590 CATAGTACCA
* * * * *
26259600 TTACTGATGGCTTTGTGTCGATCATAGTACCGTTACTGATGTCTTTGTGCCGATCATATTACCGT
1 TTACTGATGGCTTTGTGCCAATCATAGTACCGCTACTGATGCCTTTGTGCCGATCATATTACCAT
* *
26259665 TACCGAT-G-GCTGTGTGTCAATCATTTCACTG
66 TACCGATGGCGCTGTGTGCCAATCATATCACTG
* * *
26259696 TTACTGATGG-TTGTGTGCCTATCATA-TACTGCTACTGATGCCTTTGTGCCGATCATGTTACCA
1 TTACTGATGGCTT-TGTGCCAATCATAGTACCGCTACTGATGCCTTTGTGCCGATCATATTACCA
* *
26259759 TTACTGATGGCGCTGTGTGCCGATCATATCACTG
65 TTACCGATGGCGCTGTGTGCCAATCATATCACTG
*
26259793 CTACTGATGGCTTTGTGCCAATCA
1 TTACTGATGGCTTTGTGCCAATCA
26259817 CATTACTGTA
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
95 41 0.39
96 22 0.21
97 39 0.38
98 2 0.02
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (98 bp):
TTACTGATGGCTTTGTGCCAATCATAGTACCGCTACTGATGCCTTTGTGCCGATCATATTACCAT
TACCGATGGCGCTGTGTGCCAATCATATCACTG
Found at i:26264461 original size:49 final size:49
Alignment explanation
Indices: 26264335--26264467 Score: 169
Period size: 49 Copynumber: 2.7 Consensus size: 49
26264325 GGTGGAAGTA
* *
26264335 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCATAAAGTGTTTC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTC
* ** * * *
26264384 AGTGGGAGCATATTTGCATATCAATGGTGGCTTG-CCACAAAGTGTTATC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTT-TC
*
26264433 AGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGT
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGT
26264468 TTTGGATAAA
Statistics
Matches: 67, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
48 11 0.16
49 56 0.84
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (49 bp):
AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTC
Found at i:26268713 original size:27 final size:27
Alignment explanation
Indices: 26268683--26268745 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26268673 GTCAGATTTT
*
26268683 GCCACAAAGACTATCTATACAGAGTAA
1 GCCACAAAGACGATCTATACAGAGTAA
* * * *
26268710 GCCACAAAGGCGATTTATATAGAGTAC
1 GCCACAAAGACGATCTATACAGAGTAA
*
26268737 GCTACAAAG
1 GCCACAAAG
26268746 GATGATGGGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
GCCACAAAGACGATCTATACAGAGTAA
Found at i:26272108 original size:23 final size:23
Alignment explanation
Indices: 26272064--26272108 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
26272054 TCTTTTTTTG
* *
26272064 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
26272087 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
26272109 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:26273634 original size:44 final size:45
Alignment explanation
Indices: 26273578--26273696 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 45
26273568 CGCATCTAGT
*
26273578 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTA-AGC-AAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGGATAGCTAA-C
* * * *
26273622 CTTATC-CTCCTGAAGTTGTAGT-GAGGCAAACTGAGGATGGCTAAT
1 CTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAGGATAGCTAAC
*
26273667 CTTCTCTCCCTGAAGTTGCAGTGGAGCAGA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA
26273697 TTAAAGCCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
43 3 0.05
44 29 0.48
45 24 0.39
46 5 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGGATAGCTAAC
Found at i:26273719 original size:44 final size:44
Alignment explanation
Indices: 26273671--26273784 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 44
26273661 GCTAATCTTC
*
26273671 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-ATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA-AATCCTA
* ** * * *
26273715 TCTCCCTGAAGTTGTAGTGGAGTGGATTAAAATCACAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAATCCTA
* *
26273759 TCTCTCTGAAGTTGCAG-AGAGCAGAT
1 TCTCCCTGAAGTTGCAGTGGAGCAGAT
26273785 CGCATCGGGT
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
43 6 0.11
44 50 0.88
45 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAATCCTA
Found at i:26273862 original size:45 final size:45
Alignment explanation
Indices: 26273793--26273914 Score: 165
Period size: 45 Copynumber: 2.7 Consensus size: 45
26273783 ATCGCATCGG
* *
26273793 GTCTTATCTCCCTGAAATTACAGTGGAGTAGACCCAAGAAAGCGA
1 GTCTTATCTCCCTGAAATTGCAGTGGAGTAGACCCAAGAAAGCAA
* * * *
26273838 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAA
1 GTCTTATCTCCCTGAAATTGCAGTGGAGTAGACCCAAGAAAGCAA
*
26273883 GTCTTATCCCCCTGAAATTGCAGTAGG-GTAGA
1 GTCTTATCTCCCTGAAATTGCAGT-GGAGTAGA
26273915 GTAAATAAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 65 0.97
46 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAATTGCAGTGGAGTAGACCCAAGAAAGCAA
Found at i:26274490 original size:19 final size:19
Alignment explanation
Indices: 26274466--26274557 Score: 148
Period size: 19 Copynumber: 4.8 Consensus size: 19
26274456 AATCTTCAAG
26274466 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
26274485 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
26274504 GATATGCAATCTTAGATAC
1 GATATGCAATCTTAGATAT
*
26274523 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
26274542 GATATGAAATCTTAGA
1 GATATGCAATCTTAGA
26274558 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26274510 original size:38 final size:38
Alignment explanation
Indices: 26274466--26274580 Score: 167
Period size: 38 Copynumber: 2.9 Consensus size: 38
26274456 AATCTTCAAG
26274466 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
26274504 GATATGCAATCTTAGATACGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
* *
26274542 GATATGAAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
26274581 GATTTAATTT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
38 49 0.71
41 7 0.10
42 13 0.19
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:26274579 original size:23 final size:22
Alignment explanation
Indices: 26274479--26274580 Score: 78
Period size: 19 Copynumber: 5.0 Consensus size: 22
26274469 ATGCAATCTT
*
26274479 AGATATGATATGTAATCTT---
1 AGATATGATATGAAATCTTAGA
*
26274498 AGATATGATATGCAATCTT--A
1 AGATATGATATGAAATCTTAGA
* *
26274518 -GATACGATATGTAATCTTAG-
1 AGATATGATATGAAATCTTAGA
26274538 --ATATGATATGAAATCTTAGA
1 AGATATGATATGAAATCTTAGA
* *
26274558 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGAAATCTTAGA
26274581 GATTTAATTT
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
19 51 0.74
22 6 0.09
23 12 0.17
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGAAATCTTAGA
Found at i:26274809 original size:23 final size:23
Alignment explanation
Indices: 26274765--26274809 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
26274755 TCTTATTTTG
* *
26274765 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
26274788 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
26274810 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:26285588 original size:50 final size:50
Alignment explanation
Indices: 26285464--26285647 Score: 205
Period size: 50 Copynumber: 3.7 Consensus size: 50
26285454 GATAATAACA
* * *
26285464 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATTTTTCTTGTA-C--
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA--CTTCTTATATCGG
* * *
26285513 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTTATATCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTTCTTATATCGG
* * * *
26285563 TGCCCATGCCATGTCCCAAACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTAC-ATGGGACTTCTTATATCGG
* *
26285613 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGG
26285648 AACCTTTCAT
Statistics
Matches: 115, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
47 7 0.06
48 1 0.01
49 35 0.30
50 71 0.62
51 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTTCTTATATCGG
Found at i:26293585 original size:27 final size:27
Alignment explanation
Indices: 26293542--26293679 Score: 168
Period size: 27 Copynumber: 5.1 Consensus size: 27
26293532 AAGACGTTAA
* *
26293542 GAAAGAAAAGCTTTTGTGGCGAACTTT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
* ** *
26293569 GAAAGAAAAGCCATTGTGGAAAACCCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
* * *
26293596 GAAAGAAAAGCCTTTATGGTGAGCTCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
* *
26293623 GAAAGAAAAGCCTTTGTGGTGAGCTCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
*
26293650 GAAAGAAAATCCTTTGTGGCGAACTCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
26293677 GAA
1 GAA
26293680 TAAACTTTCC
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGCGAACTCT
Found at i:26294753 original size:18 final size:18
Alignment explanation
Indices: 26294716--26294759 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
26294706 AGTGAAATTT
26294716 ATATAAAAATCCCTGAAGG
1 ATAT-AAAATCCCTGAAGG
*
26294735 ATTTAAAATCCCT-AGAGG
1 ATATAAAATCCCTGA-AGG
26294753 ATATAAA
1 ATATAAA
26294760 GTTTTCCGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 18 0.82
19 3 0.14
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.25
Consensus pattern (18 bp):
ATATAAAATCCCTGAAGG
Found at i:26298076 original size:44 final size:44
Alignment explanation
Indices: 26298006--26298180 Score: 289
Period size: 44 Copynumber: 4.0 Consensus size: 44
26297996 AGGGTGATTA
* *
26298006 GGTGATTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGAG
1 GGTGGTTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAG
*
26298050 GGTGGTTACATCAAAGGCATTACCAACCACAACGTTTGAAAAAG
1 GGTGGTTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAG
*
26298094 GGTGGTTACATCAAAGGCATTACTAACCACAACGTTTGAAAGAG
1 GGTGGTTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAG
*
26298138 GGTGGTTACATCAAAGGCATTGA-CAACCACAATGTTTGAAAGA
1 GGTGGTTACATCAAAGGCATT-ACCAACCACAACGTTTGAAAGA
26298181 CTAGTATACA
Statistics
Matches: 123, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 122 0.99
45 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (44 bp):
GGTGGTTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAG
Found at i:26298549 original size:46 final size:44
Alignment explanation
Indices: 26298453--26298549 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 44
26298443 AATCCATTGA
*
26298453 TAAATAGATGTCCATAACCCCTCAAATTTATAGTATTGTAACCC
1 TAAATAGATGTCCATAACCCATCAAATTTATAGTATTGTAACCC
* *
26298497 TAAAATATGAATGTCCATAACTCAT-AAATTTATTA-TCTTGTAACCCC
1 T-AAATA-G-ATGTCCATAACCCATCAAATTTA-TAGTATTGTAA-CCC
26298544 TAAATA
1 TAAATA
26298550 ATTTATAAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
44 1 0.02
45 5 0.11
46 20 0.44
47 19 0.42
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (44 bp):
TAAATAGATGTCCATAACCCATCAAATTTATAGTATTGTAACCC
Found at i:26301874 original size:16 final size:16
Alignment explanation
Indices: 26301852--26301889 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26301842 ATTTTGATAT
26301852 CATAATTAAAACCAAAA
1 CATAATT-AAACCAAAA
*
26301869 -ATAATTTAACCAAAA
1 CATAATTAAACCAAAA
26301884 CATAAT
1 CATAAT
26301890 ATCACAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (16 bp):
CATAATTAAACCAAAA
Found at i:26303208 original size:50 final size:51
Alignment explanation
Indices: 26303133--26303235 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 51
26303123 TTGTTATAGA
*
26303133 GTTAGAGTGTTTTGTTGTCC-ATTTTTTTTCTTAAGGATGATTTGAGAAAG
1 GTTAGAGTGTTTTGTTGTCCTATTTTTTTTCTTAAGGACGATTTGAGAAAG
*
26303183 GTTAGAGTGTTTTGTTGTCCTTTTTTTTTTTCTTAAGGACGATTTGAGAAAG
1 GTTAGAGTGTTTTGTTGTCC-TATTTTTTTTCTTAAGGACGATTTGAGAAAG
26303235 G
1 G
26303236 GGGTGTAGGA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 20 0.41
52 29 0.59
ACGTcount: A:0.20, C:0.07, G:0.24, T:0.49
Consensus pattern (51 bp):
GTTAGAGTGTTTTGTTGTCCTATTTTTTTTCTTAAGGACGATTTGAGAAAG
Found at i:26304271 original size:24 final size:25
Alignment explanation
Indices: 26304244--26304292 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
26304234 GAACTGGTCA
26304244 TAGAGAGAA-TTGAGGAG-GAATATT
1 TAGAGA-AATTTGAGGAGAGAATATT
26304268 TAGAGAAATTTGAGGAGAGAATATT
1 TAGAGAAATTTGAGGAGAGAATATT
26304293 GAGATTTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 2 0.09
24 14 0.61
25 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.27
Consensus pattern (25 bp):
TAGAGAAATTTGAGGAGAGAATATT
Found at i:26304294 original size:14 final size:14
Alignment explanation
Indices: 26304252--26304295 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 14
26304242 CATAGAGAGA
26304252 ATTGAGGAG-GAAT
1 ATTGAGGAGAGAAT
*
26304265 ATTTA-GAGA-AAT
1 ATTGAGGAGAGAAT
26304277 -TTGAGGAGAGAAT
1 ATTGAGGAGAGAAT
26304290 ATTGAG
1 ATTGAG
26304296 ATTTGGGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
11 3 0.12
12 10 0.40
13 7 0.28
14 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.27
Consensus pattern (14 bp):
ATTGAGGAGAGAAT
Found at i:26304407 original size:119 final size:119
Alignment explanation
Indices: 26304272--26304628 Score: 651
Period size: 119 Copynumber: 3.0 Consensus size: 119
26304262 AATATTTAGA
*
26304272 GAAATTTGAGGAGAGAATATTGAGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
1 GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
*
26304337 TTAAGGGATAGGAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGATGGATTTT
66 TTAAGGGATAGGAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
*
26304391 GAAATTTGAGGTGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
1 GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
26304456 TTAAGGGATAGGAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
66 TTAAGGGATAGGAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
* *
26304510 GAAATTTGAGGAGAGAATATTGGGATTTGTGGAGGTTGTTGTTATGGAGAGATAATAGTAGAAAA
1 GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
* *
26304575 TTAAGGGATAGGAAGTGGATGGAGCGTGTGTAGCCGAATTGGAGGAGGGATTTT
66 TTAAGGGATAGGAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
26304629 TGGGATTTGG
Statistics
Matches: 230, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 230 1.00
ACGTcount: A:0.31, C:0.02, G:0.38, T:0.29
Consensus pattern (119 bp):
GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
TTAAGGGATAGGAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
Found at i:26305614 original size:27 final size:27
Alignment explanation
Indices: 26305569--26306143 Score: 561
Period size: 27 Copynumber: 21.6 Consensus size: 27
26305559 AGACCCCAAA
* * **
26305569 ATAGGGT-AAATAACTGAAATACCCTT
1 ATAGGGTAAAATGACCGAAATACCCCC
*
26305595 ATAGGATAAAATGACCGAAATA-CCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
26305621 ATAGGGTAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26305648 ATAGGGTAAAA-AACCAAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
26305674 ATAGGGTAAAATGACAGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * * *
26305701 ATTGGATAGAATGATCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
26305728 ATAGGGTAGAATGATCGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26305755 ATAGGGTAAAACGACCGAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCC
* * * *
26305782 ATAGGGTAGAATAAACGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
26305809 ATAAGATAAAATGACCAAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* ** * * *
26305836 ATAGGTTAGTATGATCTAAATACTCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26305863 ATAGGGTAGAATGACCGGAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
26305890 ATAGGGTAGAACGACTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * * *
26305917 AGAGGGCAAAATGACTGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * * *
26305944 AGAGGGTAAAATTACCAAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
26305971 AGAGGGTAAAATAAACGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
26305998 ATAGGGTAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26306025 ACAGGGTAAAATGACTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
26306052 ACAGGGTAAAATGACTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * **
26306079 ATAGGGTAAAATAACTGTTATA-CCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
26306105 -TA--GTAATATGACCGAAATATCGCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
26306129 ATAAGGTAAAATGAC
1 ATAGGGTAAAATGAC
26306144 TGTTATGGCC
Statistics
Matches: 455, Mismatches: 87, Indels: 13
0.82 0.16 0.02
Matches are distributed among these distances:
23 12 0.03
24 3 0.01
25 4 0.01
26 55 0.12
27 381 0.84
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
ATAGGGTAAAATGACCGAAATACCCCC
Found at i:26308052 original size:13 final size:13
Alignment explanation
Indices: 26308034--26308060 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26308024 TGTATGGATT
26308034 ATCGAGATAAAAG
1 ATCGAGATAAAAG
26308047 ATCGAGATAAAAG
1 ATCGAGATAAAAG
26308060 A
1 A
26308061 CTAAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.15
Consensus pattern (13 bp):
ATCGAGATAAAAG
Found at i:26308254 original size:70 final size:70
Alignment explanation
Indices: 26308179--26308311 Score: 248
Period size: 70 Copynumber: 1.9 Consensus size: 70
26308169 AAAATGGGGT
26308179 TGTGATTGTGAAATTGATTGAGAAATGATATATGTACTAAATTGCAAGATAGCTATTATGCAAAC
1 TGTGATTGTGAAATTGATTGAGAAATGATATATGTACTAAATTGCAAGATAGCTATTATGCAAAC
26308244 TGGGC
66 TGGGC
* *
26308249 TGTGATTGTGAAATTGATTGAGAAATGATATATGTACTAAATTGCAAGATAGTTGTTATGCAA
1 TGTGATTGTGAAATTGATTGAGAAATGATATATGTACTAAATTGCAAGATAGCTATTATGCAA
26308312 TAGAATAATG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.35
Consensus pattern (70 bp):
TGTGATTGTGAAATTGATTGAGAAATGATATATGTACTAAATTGCAAGATAGCTATTATGCAAAC
TGGGC
Found at i:26324014 original size:22 final size:21
Alignment explanation
Indices: 26323921--26324035 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 21
26323911 TAGTATACTT
26323921 TTATTTTAAA-TTATCATAAATA
1 TTATTTTAAACTTATCAT--ATA
26323943 TTA-TTTAAACTTATCATATA
1 TTATTTTAAACTTATCATATA
* * * * *
26323963 TCCTAATTAAAATTTATCATGTGC
1 T--TATTTTAAACTTATCATAT-A
*
26323987 TAATTTTAAACTTATCATATTA
1 TTATTTTAAACTTATCATA-TA
* * *
26324009 TTA-TTTAGATTTATTATATA
1 TTATTTTAAACTTATCATATA
26324029 TTATTTT
1 TTATTTT
26324036 TATATAAGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
20 9 0.12
21 21 0.29
22 27 0.38
23 14 0.19
24 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (21 bp):
TTATTTTAAACTTATCATATA
Found at i:26326251 original size:5 final size:6
Alignment explanation
Indices: 26326224--26326248 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26326214 TCTACTTTTG
26326224 TTATTT TTATTT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT T
26326249 ATTGTTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:26328041 original size:164 final size:165
Alignment explanation
Indices: 26327861--26328192 Score: 594
Period size: 166 Copynumber: 2.0 Consensus size: 165
26327851 CTTTTATTTT
26327861 TCATTTATAC-ATATATATATATATTATTTTCTCTATTTTTTATTTATTTTTCGCTCAAAGTATA
1 TCATTTATACAATATATATATATATTATTTTCTCTATTTTTTATTTATTTTTCGCTCAAAGTATA
26327925 AAAAAAAGGGTGAGGGGCTTACCTTCGAAGCTTCACCGATGAAACCCCTGCTCGCCGCGTCCAAA
66 AAAAAAAGGGTGAGGGGCTTACCTTCGAAGCTTCACCGATGAAACCCCTGCTCGCCGCGTCCAAA
* *
26327990 TCGGAAGTCTGGCGGAGGGTTGAGGCTTGAGGCAG
131 TCGAAAGTCTGGCAGAGGGTTGAGGCTTGAGGCAG
*
26328025 TCATTTATACATATATATATATATATTATTTTCTCTATTTTTTATTTCTTTTTCGCTCAAAGTAT
1 TCATTTATACA-ATATATATATATATTATTTTCTCTATTTTTTATTTATTTTTCGCTCAAAGTAT
* *
26328090 AAAAAAAAGGGTGAGGGGCTTACCTTCGAAGCTTCGCCGATGAAACCCCTGCTCGCCGTGTCCAA
65 AAAAAAAAGGGTGAGGGGCTTACCTTCGAAGCTTCACCGATGAAACCCCTGCTCGCCGCGTCCAA
*
26328155 ATCGAAAGTTTGGCAGAGGGTTGAGGCTTGAGGCAG
130 ATCGAAAGTCTGGCAGAGGGTTGAGGCTTGAGGCAG
26328191 TC
1 TC
26328193 GCGCGTTGCG
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
164 10 0.06
166 150 0.94
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34
Consensus pattern (165 bp):
TCATTTATACAATATATATATATATTATTTTCTCTATTTTTTATTTATTTTTCGCTCAAAGTATA
AAAAAAAGGGTGAGGGGCTTACCTTCGAAGCTTCACCGATGAAACCCCTGCTCGCCGCGTCCAAA
TCGAAAGTCTGGCAGAGGGTTGAGGCTTGAGGCAG
Found at i:26329047 original size:390 final size:388
Alignment explanation
Indices: 26328529--26329301 Score: 1474
Period size: 390 Copynumber: 2.0 Consensus size: 388
26328519 CGCTACGCAG
26328529 CGTTTTGGGGGTAGGATTAATTTCCCTTTTAGTCCCCACTGTTGCTCGCGCGTCCCAATTTGGTT
1 CGTTTTGGGGGTAGGATTAATTTCCCTTTTAGTCCCCACTGTTGCTCGCGCGTCCCAATTTGGTT
*
26328594 TTTTTTGTTTATTGCGACTTTACTTTTTTCGTTTTAATTCAATTTGGTCCATATTTTTAATTATT
66 TTTTTTGTTTATTGCGACTTTACTTTTTTCATTTTAATTCAATTTGGTCCATATTTTTAATTATT
*
26328659 TTTATTATCATTATTATACCTATCTATGTACACGCACATGCGTTTTTATCATATCTATGTATATA
131 TTTATTATCATTATTATACCTATCTATGTACACGCACATGCATTTTTATCATATCTATGTATATA
26328724 CAGTATATATATTTAAATGTTTTATATGCATATGTTGTATACGTTATTATTATTATTTTATAACA
196 CAGTATATATATTTAAATGTTTTATATGCATATGTTGTATACGTTATTATTATTATTTTATAACA
26328789 TACATGCATTGTTTTTTATAATACATACACATACGCATGGCTTTTATATAATATATATATATACA
261 TACATGCATTGTTTTTTATAATACATACACATACGCATGGCTTTTATATAATATATATATATACA
26328854 TTCTTTTTTATAGTACACATATACCTCTATATATTTTATACATTTTTTTTATTTTCTACACAA
326 TTCTTTTTTATAGTACACATATACCTCTATATATTTTATACATTTTTTTTATTTTCTACACAA
* *
26328917 CGTTTTGGGGGGTAGGATTAATTTCCCTTTTAGTCCCCACTGTTGCTTGCGCGTCCTAATTTGGT
1 CGTTTT-GGGGGTAGGATTAATTTCCCTTTTAGTCCCCACTGTTGCTCGCGCGTCCCAATTTGGT
26328982 TTTTTTTGGTTTATTGCGACTTTACTTTTTTCATTTTAATTCAATTTGGTCCATATTTTTAATTA
65 TTTTTTT-GTTTATTGCGACTTTACTTTTTTCATTTTAATTCAATTTGGTCCATATTTTTAATTA
*
26329047 TTTTTATTATCATTATTATACCTATCTGTGTACACGCACATGCATTTTTATCATATCTATGTATA
129 TTTTTATTATCATTATTATACCTATCTATGTACACGCACATGCATTTTTATCATATCTATGTATA
*
26329112 TACAGTATATATATTTAAATGTTTTATATGCATATGTTGTATACGTTATTATTATTATTTTATAT
194 TACAGTATATATATTTAAATGTTTTATATGCATATGTTGTATACGTTATTATTATTATTTTATAA
26329177 CATACATGCATTGTTTTTTATAATACATACACATACGCATGGCTTTTATATAATATATATATATA
259 CATACATGCATTGTTTTTTATAATACATACACATACGCATGGCTTTTATATAATATATATATATA
26329242 CATTCTTTTTTATAGTACACATATACCTCTATATATTTTATACATTTTTTTTATTTTCTA
324 CATTCTTTTTTATAGTACACATATACCTCTATATATTTTATACATTTTTTTTATTTTCTA
26329302 ACTTCTACAT
Statistics
Matches: 377, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
388 6 0.02
389 63 0.17
390 308 0.82
ACGTcount: A:0.26, C:0.14, G:0.10, T:0.49
Consensus pattern (388 bp):
CGTTTTGGGGGTAGGATTAATTTCCCTTTTAGTCCCCACTGTTGCTCGCGCGTCCCAATTTGGTT
TTTTTTGTTTATTGCGACTTTACTTTTTTCATTTTAATTCAATTTGGTCCATATTTTTAATTATT
TTTATTATCATTATTATACCTATCTATGTACACGCACATGCATTTTTATCATATCTATGTATATA
CAGTATATATATTTAAATGTTTTATATGCATATGTTGTATACGTTATTATTATTATTTTATAACA
TACATGCATTGTTTTTTATAATACATACACATACGCATGGCTTTTATATAATATATATATATACA
TTCTTTTTTATAGTACACATATACCTCTATATATTTTATACATTTTTTTTATTTTCTACACAA
Found at i:26329497 original size:15 final size:15
Alignment explanation
Indices: 26329473--26329505 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26329463 TGTATACTTG
26329473 TATATCTGTGTTAGA
1 TATATCTGTGTTAGA
*
26329488 TATATGTGTGTTAGA
1 TATATCTGTGTTAGA
26329503 TAT
1 TAT
26329506 GTTTGCAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TATATCTGTGTTAGA
Found at i:26333054 original size:20 final size:20
Alignment explanation
Indices: 26333029--26333068 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26333019 TTCATCTCAT
26333029 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
**
26333049 GCATCGCATTTTATGCATTA
1 GCATCGCATCATATGCATTA
26333069 TAGACCTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:26341193 original size:44 final size:44
Alignment explanation
Indices: 26341130--26341842 Score: 663
Period size: 44 Copynumber: 16.1 Consensus size: 44
26341120 GCAGGTTGAG
* * * *
26341130 AGATAGCAGATCTTGTCTTCATGTACTAGCATGAAGTAGATCAA
1 AGATAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
* *
26341174 AGATAACAGATCTTGTCTTCCCATACTAGTGGC--GAAGTAGATCGA
1 AGATAACAGATCTTGTCTT--CATA-TACTGGCGTGAAGTAGATCAA
* *
26341219 AGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAA
1 AGATAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
** * * * * **
26341263 AGATAACAGATCTTGTCTTCCCATACTGGTGGCGTAGTAGTTTGA
1 AGATAACAGATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAA
* ** * * * *
26341308 AGAAAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGA
1 AGATAACAGATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAA
* * *
26341353 AGA-AAGCAGATCTTGTCTTCATGTACTGTCGTGAAGTAGAT-ATG
1 AGATAA-CAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCA-A
* *
26341397 AGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAA
1 AGATAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
** * * *
26341441 AGATAACAGATCTTGTCTTCCCATACTGATG-GCGAAGCAGATCGA
1 AGATAACAGATCTTGTCTTCATATACTG--GCGTGAAGTAGATCAA
* *
26341486 AGA-AAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGAT-ATG
1 AGATAA-CAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCA-A
* *
26341530 AGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAA
1 AGATAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
** * * *
26341574 AGATAACAGATCTTGTCTTCCCATACTGATG-GCGAAGCAGATCGA
1 AGATAACAGATCTTGTCTTCATATACTG--GCGTGAAGTAGATCAA
* *
26341619 AGA-AAGCAGATCTTGTCTTTATATACTGGCGTGAAGTAGATCAG
1 AGATAA-CAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
* * *
26341663 AGATACCAGATCTTGTCTTCATGTACTGACGTGAAGTAGATCAA
1 AGATAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
** * * * *
26341707 AGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGA
1 AGATAACAGATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAA
* ** * *
26341752 AGA-AAGTAGATCTTGTCTTCATGCACTGGCGTGAAGTTGATCAG
1 AGATAA-CAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
* * *
26341796 AGATACCAGATCTTGTCTTCATGTACTGACGTGAAGTAGATCAA
1 AGATAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
26341840 AGA
1 AGA
26341843 CAATCACGAT
Statistics
Matches: 543, Mismatches: 101, Indels: 50
0.78 0.15 0.07
Matches are distributed among these distances:
42 6 0.01
43 5 0.01
44 320 0.59
45 202 0.37
46 5 0.01
47 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
AGATAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAA
Found at i:26341500 original size:133 final size:133
Alignment explanation
Indices: 26341128--26341842 Score: 1094
Period size: 133 Copynumber: 5.4 Consensus size: 133
26341118 GAGCAGGTTG
* * *
26341128 AGAGATAGCAGATCTTGTCTTCATGTACTAGCATGAAGTAGATCAAAGATAACAGATCTTGTCTT
1 AGAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCTT
* *
26341193 CCCATACT-AGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTA
66 CCCATACTGA-TGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
26341257 GATC
130 GATC
* * ** *** * * ** *
26341261 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGTAGTAGTTTGAAGAAAACAGATCTTGTCT
1 AGAGATACCAGATCTTGTCTTCATATACTGG-CATGAAGTAGATCAAAGATAACAGATCTTGTCT
* *
26341326 TCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGTCGTGAAGTA
65 TCCCATACTGATGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
26341391 GAT-
130 GATC
26341394 ATGAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCT
1 A-GAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCT
26341459 TCCCATACTGATGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
65 TCCCATACTGATGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
26341524 GAT-
130 GATC
26341527 ATGAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCT
1 A-GAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCT
* *
26341592 TCCCATACTGATGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTTATATACTGGCGTGAAGTA
65 TCCCATACTGATGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
26341657 GATC
130 GATC
* * *
26341661 AGAGATACCAGATCTTGTCTTCATGTACTGACGTGAAGTAGATCAAAGATAACAGATCTTGTCTT
1 AGAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCTT
* * * *
26341726 CCCATACTGGTGGCGAAGCAGATCGAAGAAAGTAGATCTTGTCTTCATGCACTGGCGTGAAGTTG
66 CCCATACTGATGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAG
26341791 ATC
131 ATC
* * *
26341794 AGAGATACCAGATCTTGTCTTCATGTACTGACGTGAAGTAGATCAAAGA
1 AGAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGA
26341843 CAATCACGAT
Statistics
Matches: 535, Mismatches: 43, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
133 420 0.79
134 115 0.21
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (133 bp):
AGAGATACCAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCTT
CCCATACTGATGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAG
ATC
Found at i:26341823 original size:89 final size:89
Alignment explanation
Indices: 26341136--26341816 Score: 714
Period size: 89 Copynumber: 7.7 Consensus size: 89
26341126 TGAGAGATAG
* * *
26341136 CAGATCTTGTCTTCATGTACTAGCATGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCACATACT
*
26341201 AGTGGCGAAGTAGATCGAAGAAAA
66 GGTGGCGAAGTAGATCGAAGAAAA
*
26341225 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCACATACT
* * *
26341290 GGTGGCGTAGTAGTTTGAAGAAAA
66 GGTGGCGAAGTAGATCGAAGAAAA
*** * * * * **
26341314 CAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGA-AAGCAGATCTTGTCTTCATGTA
1 CAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCACATA
* * * * *
26341378 CT-GTCGTGAAGTAGATATG-AGATAC
64 CTGGTGGCGAAGTAGAT-CGAAGAAAA
* * *
26341403 CAGATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCACATACT
* * *
26341468 GATGGCGAAGCAGATCGAAGAAAG
66 GGTGGCGAAGTAGATCGAAGAAAA
* * *
26341492 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGAT-ATGAGATACCAGATCTTGTCTTCATATAC
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCA-AAGATAACAGATCTTGTCTTCACATAC
*** * *
26341556 TGG-CATGAAGTAGATCAAAGATAA
65 TGGTGGCGAAGTAGATCGAAGAAAA
*** * * * * *
26341580 CAGATCTTGTCTTCCCATACTGATG-GCGAAGCAGATCGAAGA-AAGCAGATCTTGTCTTTATAT
1 CAGATCTTGTCTTCATGTACTG--GCGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCACAT
* * * *
26341643 ACTGG-CGTGAAGTAGATC-AGAGATAC
63 ACTGGTGGCGAAGTAGATCGA-AGAAAA
* *
26341669 CAGATCTTGTCTTCATGTACTGACGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCACATACT
* *
26341734 GGTGGCGAAGCAGATCGAAGAAAG
66 GGTGGCGAAGTAGATCGAAGAAAA
* * * * *
26341758 TAGATCTTGTCTTCATGCACTGGCGTGAAGTTGATCAGAGATACCAGATCTTGTCTTCA
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCA
26341817 TGTACTGACG
Statistics
Matches: 490, Mismatches: 86, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
88 102 0.21
89 352 0.72
90 36 0.07
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (89 bp):
CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCACATACT
GGTGGCGAAGTAGATCGAAGAAAA
Found at i:26346813 original size:16 final size:16
Alignment explanation
Indices: 26346792--26346850 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 16
26346782 ACATTTTAAA
26346792 TAATTTTAAGTTTTTT
1 TAATTTTAAGTTTTTT
*
26346808 TAATTTTAGAATTTTTTT
1 TAATTTT--AAGTTTTTT
* *
26346826 TATTTTTATGATTTTTT
1 TAATTTTAAG-TTTTTT
26346843 ATAATTTT
1 -TAATTTT
26346851 TCAGGAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
16 8 0.24
17 6 0.18
18 20 0.59
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.69
Consensus pattern (16 bp):
TAATTTTAAGTTTTTT
Found at i:26346823 original size:18 final size:18
Alignment explanation
Indices: 26346802--26346850 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
26346792 TAATTTTAAG
26346802 TTTTTTTAATTTTA-GAAT
1 TTTTTTTAATTTTATG-AT
*
26346820 TTTTTTTATTTTTATGAT
1 TTTTTTTAATTTTATGAT
*
26346838 TTTTTATAATTTT
1 TTTTTTTAATTTT
26346851 TCAGGAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 26 0.96
19 1 0.04
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTTTTTAATTTTATGAT
Found at i:26346849 original size:19 final size:18
Alignment explanation
Indices: 26346802--26346861 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 18
26346792 TAATTTTAAG
26346802 TTTTTTTAA-TTTTAGAA
1 TTTTTTTAATTTTTAGAA
*
26346819 TTTTTTTTATTTTTATG-A
1 TTTTTTTAATTTTTA-GAA
26346837 TTTTTTATAATTTTTCAGGAA
1 TTTTTT-TAATTTTT-A-GAA
26346858 TTTT
1 TTTT
26346862 GAGCTTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
17 8 0.23
18 12 0.34
19 8 0.23
20 2 0.06
21 5 0.14
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.68
Consensus pattern (18 bp):
TTTTTTTAATTTTTAGAA
Found at i:26349867 original size:42 final size:42
Alignment explanation
Indices: 26349808--26349974 Score: 268
Period size: 42 Copynumber: 4.0 Consensus size: 42
26349798 AATGTTTGCA
*
26349808 GCTTACAAACAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
1 GCTTAGAAA-AAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
* *
26349851 GTTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGC
1 GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
26349893 GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
1 GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
*
26349935 GCTTAGAAAAAAA---CGCTAAAGATCATGTTCTTTAGCGGC
1 GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
26349974 G
1 G
26349975 TTTATTCTTT
Statistics
Matches: 118, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 26 0.22
42 85 0.72
43 7 0.06
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (42 bp):
GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
Found at i:26350017 original size:42 final size:41
Alignment explanation
Indices: 26349966--26350045 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 41
26349956 ATCATGTTCT
* *
26349966 TTAGCGGCGTTTATTCTTT-AGCGCCGCTAAAGAACATGAAAA
1 TTAGCGGCGTTT-TT-TTTAAACCCCGCTAAAGAACATGAAAA
*
26350008 TTAGTGGCGTTTTTTTTAAAACCCCGCTAAAGAACATG
1 TTAGCGGCGTTTTTTTT-AAACCCCGCTAAAGAACATG
26350046 TTCTTTAGCG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 3 0.09
41 2 0.06
42 28 0.85
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (41 bp):
TTAGCGGCGTTTTTTTTAAACCCCGCTAAAGAACATGAAAA
Found at i:26355748 original size:9 final size:9
Alignment explanation
Indices: 26355734--26355919 Score: 143
Period size: 9 Copynumber: 20.8 Consensus size: 9
26355724 ATAAAGAAAA
26355734 TTATGTAAG
1 TTATGTAAG
*
26355743 TTATGTACG
1 TTATGTAAG
26355752 TGTATGT-A-
1 T-TATGTAAG
26355760 TTATGTAAG
1 TTATGTAAG
26355769 TTATGT-A-
1 TTATGTAAG
**
26355776 TTAAATAAG
1 TTATGTAAG
*
26355785 CTATGTAAG
1 TTATGTAAG
*
26355794 TTGTGTATTATG
1 TTATGTA--A-G
*
26355806 TCAT-TAAG
1 TTATGTAAG
26355814 TTATGTAAG
1 TTATGTAAG
**
26355823 TTATCAAAG
1 TTATGTAAG
* * *
26355832 TAATGCATG
1 TTATGTAAG
26355841 TTATGTAAG
1 TTATGTAAG
26355850 TTATGTAAG
1 TTATGTAAG
26355859 TTATGTAAG
1 TTATGTAAG
*
26355868 TTA--AAAG
1 TTATGTAAG
*
26355875 TATTATGTAGG
1 --TTATGTAAG
26355886 TTATGTAAG
1 TTATGTAAG
*
26355895 TTGTGTAAG
1 TTATGTAAG
26355904 TTATGTAAG
1 TTATGTAAG
26355913 TTATGTA
1 TTATGTA
26355920 TGCTAAGTAT
Statistics
Matches: 137, Mismatches: 27, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
7 12 0.09
8 8 0.06
9 104 0.76
10 5 0.04
11 5 0.04
12 3 0.02
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.44
Consensus pattern (9 bp):
TTATGTAAG
Found at i:26355957 original size:54 final size:53
Alignment explanation
Indices: 26355840--26355968 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
26355830 AGTAATGCAT
* *
26355840 GTTATGTAAGTTATGTAAGTTATGTAAGTTAAAAGTATTATGTAGGTTATGTAA
1 GTTACGTAAGTTATGTAAGTTATGTAAGCT-AAAGTATTATGTAGGTTATGTAA
** * *
26355894 GTTGTGTAAGTTATGTAAGTTATGTATGCT-AAGTATTATGTAAGTCGTTATGTTA
1 GTTACGTAAGTTATGTAAGTTATGTAAGCTAAAGTATTATGT-AG--GTTATGTAA
* *
26355949 -TTACGTAAGTTCTTTAAGTT
1 GTTACGTAAGTTATGTAAGTT
26355969 TATATATAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
52 11 0.17
53 2 0.03
54 43 0.67
55 8 0.12
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.45
Consensus pattern (53 bp):
GTTACGTAAGTTATGTAAGTTATGTAAGCTAAAGTATTATGTAGGTTATGTAA
Found at i:26356059 original size:37 final size:38
Alignment explanation
Indices: 26356008--26356104 Score: 169
Period size: 37 Copynumber: 2.6 Consensus size: 38
26355998 AGTTAATATG
*
26356008 TAAGTAATGTATTATGTAAGTTTATATAAAAAAA-TTA
1 TAAGTTATGTATTATGTAAGTTTATATAAAAAAATTTA
*
26356045 TAAGTTATGAATTATGTAAGTTTATATAAAAAAATTTA
1 TAAGTTATGTATTATGTAAGTTTATATAAAAAAATTTA
26356083 TAAGTTATGTATTATGTAAGTT
1 TAAGTTATGTATTATGTAAGTT
26356105 AANNNNNNNN
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 32 0.57
38 24 0.43
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.43
Consensus pattern (38 bp):
TAAGTTATGTATTATGTAAGTTTATATAAAAAAATTTA
Found at i:26357455 original size:18 final size:18
Alignment explanation
Indices: 26357434--26357471 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26357424 TTTCTTCAAA
* *
26357434 AATATTAACATTGCAGGT
1 AATATTAACACTGCAAGT
26357452 AATATTAACACTGCAAGT
1 AATATTAACACTGCAAGT
26357470 AA
1 AA
26357472 CTAACAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (18 bp):
AATATTAACACTGCAAGT
Found at i:26358517 original size:365 final size:364
Alignment explanation
Indices: 26357841--26358554 Score: 954
Period size: 365 Copynumber: 2.0 Consensus size: 364
26357831 TAAGTCAGAC
*
26357841 TTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCGTTTTAT
1 TTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCATTTTAT
* * * * * *
26357906 AAAAATACAAGAAAACCTGGTGTTTTCTCAAACACGCCACAATCAATATATTATCGAACTGGCGT
66 AAAAATACAAGAAAACCTGGCGTTTTCCCAAAAACGCCACAATCAATATATTATCGAACCGACGC
** *
26357971 CGTTTTCAGTAAATTTTATACATCTTTGCGGCGTTTTTAATAAAACGCCACTAAAAGATTCCATC
131 CGTTTTCAGTAAATTTTATACATCCCTGCGGCGTTTGTAATAAAACGCCACTAAAAGATTCCATC
* * *
26358036 CTTCAACTAAAACAGCGTCGTTTTCGCAGAGTTCAAATATTATTTACGGCGCTTTAAGGAAAAAC
196 CTTCAACTAAAACAGCGCCGTTTTCGCAAAGTTCAAATATTATTTACAGCGCTTTAAGGAAAAAC
* * * *
26358101 GCCACAAGATAAAGTTATCCCCTCAGTCGAAACGCCGACGTATAGGTAAATGCAA-TAAATATTT
261 GCCACAAGATAAACTTATCCCCTCAATCGAAACGACGACGTATAGGTAAATGCAACCAAATATTT
*
26358165 GTGGAGCTTTTTATAAAAACGCCGGTAATGTCAAACTTT
326 GTGGAGCTTTTTAGAAAAACGCCGGTAATGTCAAACTTT
** *
26358204 TTGCGGCG-TTTAATTGGAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCATTTTAT
1 TTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCATTTTAT
* * *
26358268 AAAAATATAAGGAAACGTTCTGGCGTTTTCCCAAAAACGCCACAATTAATATATTATCGAACCGA
66 AAAAATACAAGAAAAC---CTGGCGTTTTCCCAAAAACGCCACAATCAATATATTATCGAACCGA
*
26358333 CGCCGTTTTCAGTAAATTTTATACATCCCTGCGGCGTTTGTAATAAAACGCCACTAAAATATTCC
128 CGCCGTTTTCAGTAAATTTTATACATCCCTGCGGCGTTTGTAATAAAACGCCACTAAAAGATTCC
* * * * * **
26358398 ATCCTTCAACTTAAACGGTGCCGTTTTGGCAAAGTTTAAA-AGTTATTTACAGCGCTTTTCGGTA
193 ATCCTTCAACTAAAACAGCGCCGTTTTCGCAAAGTTCAAATA-TTATTTACAGCGCTTTAAGG-A
* * * * *
26358462 AAAA-GCCACAA-CTAAAACTTATTCCCT-AATCCGAAATGACGCCGTATCGGTAAATGCAACCA
256 AAAACGCCACAAGAT-AAACTTATCCCCTCAAT-CGAAACGACGACGTATAGGTAAATGCAACCA
* * * *
26358524 AATTTTTGTGGCGTTTTTTAGCAAAACGCCG
319 AATATTTGTGGAGCTTTTTAGAAAAACGCCG
26358555 CTAAATCTTA
Statistics
Matches: 302, Mismatches: 41, Indels: 13
0.85 0.12 0.04
Matches are distributed among these distances:
362 66 0.22
363 8 0.03
364 4 0.01
365 192 0.64
366 32 0.11
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (364 bp):
TTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCATTTTAT
AAAAATACAAGAAAACCTGGCGTTTTCCCAAAAACGCCACAATCAATATATTATCGAACCGACGC
CGTTTTCAGTAAATTTTATACATCCCTGCGGCGTTTGTAATAAAACGCCACTAAAAGATTCCATC
CTTCAACTAAAACAGCGCCGTTTTCGCAAAGTTCAAATATTATTTACAGCGCTTTAAGGAAAAAC
GCCACAAGATAAACTTATCCCCTCAATCGAAACGACGACGTATAGGTAAATGCAACCAAATATTT
GTGGAGCTTTTTAGAAAAACGCCGGTAATGTCAAACTTT
Found at i:26358616 original size:24 final size:24
Alignment explanation
Indices: 26358589--26358669 Score: 83
Period size: 24 Copynumber: 3.2 Consensus size: 24
26358579 TGTATCATTC
*
26358589 ATTTAAATAATTAATTTCCTATCT
1 ATTTAAATAATTAATTACCTATCT
*
26358613 ATTTAAACAATTAATTACCTA-CAAATT
1 ATTTAAATAATTAATTACCTATC----T
*
26358640 AATTTAAATAATTAATTACCTATTT
1 -ATTTAAATAATTAATTACCTATCT
26358665 ATTTA
1 ATTTA
26358670 TTTGTTTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
23 1 0.02
24 24 0.51
25 1 0.02
27 1 0.02
28 20 0.43
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTTAAATAATTAATTACCTATCT
Found at i:26358672 original size:28 final size:26
Alignment explanation
Indices: 26358589--26358672 Score: 73
Period size: 28 Copynumber: 3.2 Consensus size: 26
26358579 TGTATCATTC
* *
26358589 ATTTAAATAATTAATTTCC--TATCT
1 ATTTAAATAATTAATTACCTATATTT
* * *
26358613 ATTTAAACAATTAATTACCTACAAATTA
1 ATTTAAATAATTAATTACCT--ATATTT
26358641 ATTTAAATAATTAATTACCTATTTATTT
1 ATTTAAATAATTAATTACCTA--TATTT
26358669 ATTT
1 ATTT
26358673 GTTTATTTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
24 17 0.37
26 1 0.02
28 28 0.61
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTTAAATAATTAATTACCTATATTT
Found at i:26359110 original size:14 final size:14
Alignment explanation
Indices: 26359091--26359124 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26359081 GATCTTGAAT
*
26359091 CCCTAACCCTTAAC
1 CCCTAACCCATAAC
*
26359105 CCCTAATCCATAAC
1 CCCTAACCCATAAC
26359119 CCCTAA
1 CCCTAA
26359125 ACATTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.32, C:0.47, G:0.00, T:0.21
Consensus pattern (14 bp):
CCCTAACCCATAAC
Found at i:26359238 original size:14 final size:13
Alignment explanation
Indices: 26359221--26359264 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
26359211 CCCTAACTCT
26359221 TAACATCTAACCCC
1 TAACA-CTAACCCC
26359235 TAACA-TAACCCC
1 TAACACTAACCCC
*
26359247 TAACCCCTAACCCC
1 TAA-CACTAACCCC
26359261 TAAC
1 TAAC
26359265 CCTTAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 10 0.37
13 2 0.07
14 15 0.56
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.18
Consensus pattern (13 bp):
TAACACTAACCCC
Found at i:26359282 original size:14 final size:14
Alignment explanation
Indices: 26359228--26359284 Score: 64
Period size: 14 Copynumber: 4.2 Consensus size: 14
26359218 TCTTAACATC
*
26359228 TAACCCCTAA--CA
1 TAACCCCTAACCCT
*
26359240 TAACCCCTAACCCC
1 TAACCCCTAACCCT
26359254 TAACCCCTAACCCT
1 TAACCCCTAACCCT
* *
26359268 TAACCCATAAACCT
1 TAACCCCTAACCCT
26359282 TAA
1 TAA
26359285 ATCACATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
12 10 0.26
14 29 0.74
ACGTcount: A:0.37, C:0.44, G:0.00, T:0.19
Consensus pattern (14 bp):
TAACCCCTAACCCT
Found at i:26360074 original size:114 final size:112
Alignment explanation
Indices: 26359828--26360365 Score: 596
Period size: 113 Copynumber: 4.8 Consensus size: 112
26359818 ATTACTGAGC
* * * * ** *
26359828 ATTAGCGGCGCTTTACAAAAAACGCCACTAAAT-CCCGAAAGCTCAAAAAACGGCGTCGTTGTGC
1 ATTAGCGTCGCTTTCCGAAAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACGGCGTCGTTGGGC
* ***** * * *
26359892 TTAGGTTATTTGTGGCGCTTAATCTAAAACGTCGCTAATGCCTGGAT
66 TTAGGTTTTTTGTGGCGCTTTGGAAAAAACGCCGCTAAAGCCTGGGT
* * * * * *
26359939 ATTAGCGGCTCTTACTTGAAAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACAGCATCGTTGGG
1 ATTAGCGTCGCTTTC-CGAAAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACGGCGTCGTTGGG
*
26360004 CTTAGGTTTTTTTGTGGCGCTTTGGAAAAAACGCCGCTAAAGCTATGGGT
65 CTTAGG-TTTTTTGTGGCGCTTTGGAAAAAACGCCGCTAAAGC-CTGGGT
* * *
26360054 ATTAGCGTCGCTTTCCGAAAAAAGCCGCTAAGTCACCGAAAGCTCAGGAAACGGCGTCGTTGGGC
1 ATTAGCGTCGCTTTCCGAAAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACGGCGTCGTTGGGC
* *
26360119 TTAGGTTTTTTGTGGCGCTTTGGAAAAAACGCCACTAAATCCCTGGGT
66 TTAGGTTTTTTGTGGCGCTTTGGAAAAAACGCCGCTAAA-GCCTGGGT
*
26360167 ATTAGCGTCGC-TTCCTGAAAAACGCCGCTAAATCCCAGAAAGCTCAGGAAACGGCGTCGTTGGG
1 ATTAGCGTCGCTTTCC-GAAAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACGGCGTCGTTGGG
* * * ***
26360231 CTCAGTTTTTTTTGTGGCACTTTGTTGAAAACGCCGCTAAAGCCTGGGT
65 CTTAG-GTTTTTTGTGGCGCTTTGGAAAAAACGCCGCTAAAGCCTGGGT
* ** * * *
26360280 TTTAGCGTCGC-TTCAAAAAAAACGCCGCTAATTCCCCTAAAGCTCAGAAAACGGCGTCGTTGGG
1 ATTAGCGTCGCTTTC-CGAAAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACGGCGTCGTTGGG
* * *
26360344 ATTAGGTATTTTGCGGCGCTTT
65 CTTAGGTTTTTTGTGGCGCTTT
26360366 TTTAAAACGC
Statistics
Matches: 361, Mismatches: 58, Indels: 15
0.83 0.13 0.03
Matches are distributed among these distances:
111 12 0.03
112 32 0.09
113 194 0.54
114 107 0.30
115 16 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (112 bp):
ATTAGCGTCGCTTTCCGAAAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACGGCGTCGTTGGGC
TTAGGTTTTTTGTGGCGCTTTGGAAAAAACGCCGCTAAAGCCTGGGT
Found at i:26360264 original size:227 final size:225
Alignment explanation
Indices: 26359828--26360365 Score: 668
Period size: 227 Copynumber: 2.4 Consensus size: 225
26359818 ATTACTGAGC
* * * * *
26359828 ATTAGCGGCGCTTTACAAAAAACGCCACTAAATCCCGAAAGCTCAAAAAACGGCGTCGTTGTGCT
1 ATTAGCGTCGCTTTCCAAAAAACGCCGCTAAATCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* * *** * * * * *
26359893 TAGGTTATTTGTGGCGCTTAATCTAAAACGTCGCTAATGCCTGGATATTAGCGGCTCTTACTTGA
66 TAGGTTTTTTGTGGCGCTTTAGAAAAAACGCCACTAATCCCTGGATATTAGCGGCGCTTACCTGA
* * *
26359958 AAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACAGCATCGTTGGGCTTAGGTTTTTTTGTGGCG
131 AAAACGCCGCTAAATCCCAGAAAGCTCAGGAAACAGCATCGTTGGGCTCAGGTTTTTTTGTGGCA
26360023 CTTTGGAAAAAACGCCGCTAAAGCTATGGGT
196 CTTTGGAAAAAACGCCGCTAAAGC-ATGGGT
* *
26360054 ATTAGCGTCGCTTTCCGAAAAAA-GCCGCTAAGTCACCGAAAGCTCAGGAAACGGCGTCGTTGGG
1 ATTAGCGTCGCTTTCC-AAAAAACGCCGCTAAATC-CCGAAAGCTCAGAAAACGGCGTCGTTGGG
* * *
26360118 CTTAGGTTTTTTGTGGCGCTTTGGAAAAAACGCCACTAAATCCCTGGGTATTAGCGTCGCTT-CC
64 CTTAGGTTTTTTGTGGCGCTTTAGAAAAAACGCCACT-AATCCCTGGATATTAGCGGCGCTTACC
* * *
26360182 TGAAAAACGCCGCTAAATCCCAGAAAGCTCAGGAAACGGCGTCGTTGGGCTCAGTTTTTTTTGTG
128 TGAAAAACGCCGCTAAATCCCAGAAAGCTCAGGAAACAGCATCGTTGGGCTCAGGTTTTTTTGTG
*** *
26360247 GCACTTTGTTGAAAACGCCGCTAAAGCCTGGGT
193 GCACTTTGGAAAAAACGCCGCTAAAGCATGGGT
* * * *
26360280 TTTAGCGTCGC-TTCAAAAAAAACGCCGCTAATTCCCCTAAAGCTCAGAAAACGGCGTCGTTGGG
1 ATTAGCGTCGCTTTC-CAAAAAACGCCGCTAAAT-CCCGAAAGCTCAGAAAACGGCGTCGTTGGG
* * *
26360344 ATTAGGTATTTTGCGGCGCTTT
64 CTTAGGTTTTTTGTGGCGCTTT
26360366 TTTAAAACGC
Statistics
Matches: 268, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
225 9 0.03
226 93 0.35
227 146 0.54
228 20 0.07
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (225 bp):
ATTAGCGTCGCTTTCCAAAAAACGCCGCTAAATCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
TAGGTTTTTTGTGGCGCTTTAGAAAAAACGCCACTAATCCCTGGATATTAGCGGCGCTTACCTGA
AAAACGCCGCTAAATCCCAGAAAGCTCAGGAAACAGCATCGTTGGGCTCAGGTTTTTTTGTGGCA
CTTTGGAAAAAACGCCGCTAAAGCATGGGT
Found at i:26363653 original size:25 final size:24
Alignment explanation
Indices: 26363584--26363760 Score: 140
Period size: 24 Copynumber: 7.4 Consensus size: 24
26363574 CAGTAATTGG
*
26363584 CTTTGTGGCATACTCTGTAAGTGC
1 CTTTGTGGTATACTCTGTAAGTGC
* * *
26363608 CTTTGTGGTACATTTTGTAAGTGCC
1 CTTTGTGGTATACTCTGTAAGTG-C
* *
26363633 CTTTGTGGTGTACTCTATAAGTG-
1 CTTTGTGGTATACTCTGTAAGTGC
* * * *
26363656 TTTTGTGGCATATTCTGTTAGTGC
1 CTTTGTGGTATACTCTGTAAGTGC
* * * * *
26363680 CTTTGTGGCATACTTTGCAACTGT
1 CTTTGTGGTATACTCTGTAAGTGC
* * *
26363704 CTTTGTGGTATATTCTATAAGTGT
1 CTTTGTGGTATACTCTGTAAGTGC
* * * *
26363728 CTTTGTGGTGTACTATGTAAATGT
1 CTTTGTGGTATACTCTGTAAGTGC
26363752 CTTTGTGGT
1 CTTTGTGGT
26363761 GTATTCAAGG
Statistics
Matches: 118, Mismatches: 33, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
23 17 0.14
24 82 0.69
25 19 0.16
ACGTcount: A:0.16, C:0.14, G:0.24, T:0.45
Consensus pattern (24 bp):
CTTTGTGGTATACTCTGTAAGTGC
Found at i:26363709 original size:48 final size:48
Alignment explanation
Indices: 26363584--26363766 Score: 188
Period size: 48 Copynumber: 3.8 Consensus size: 48
26363574 CAGTAATTGG
* * *
26363584 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGTACATTTTGTAAGTGCC
1 CTTTGTGGCATACTCTGTAAGTGTCTTTGTGGTATATTCTGTAAGTG-C
** * * *
26363633 CTTTGTGGTGTACTCTATAAGTGT-TTTGTGGCATATTCTGTTAGTGC
1 CTTTGTGGCATACTCTGTAAGTGTCTTTGTGGTATATTCTGTAAGTGC
* * * * *
26363680 CTTTGTGGCATACTTTGCAACTGTCTTTGTGGTATATTCTATAAGTGT
1 CTTTGTGGCATACTCTGTAAGTGTCTTTGTGGTATATTCTGTAAGTGC
** * * *
26363728 CTTTGTGGTGTACTATGTAAATGTCTTTGTGGTGTATTC
1 CTTTGTGGCATACTCTGTAAGTGTCTTTGTGGTATATTC
26363767 AAGGGTGCCT
Statistics
Matches: 109, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
47 19 0.17
48 70 0.64
49 20 0.18
ACGTcount: A:0.16, C:0.14, G:0.24, T:0.45
Consensus pattern (48 bp):
CTTTGTGGCATACTCTGTAAGTGTCTTTGTGGTATATTCTGTAAGTGC
Found at i:26363733 original size:72 final size:73
Alignment explanation
Indices: 26363584--26363759 Score: 203
Period size: 72 Copynumber: 2.4 Consensus size: 73
26363574 CAGTAATTGG
* * * * *
26363584 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGTACATTTTGTAAGTGCCCTTTGTGGTGTACTCT
1 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGCACACTTTGCAACTGCCCTTTGTGGTATACTCT
26363649 ATAAGTGT
66 ATAAGTGT
* * * * *
26363657 -TTTGTGGCATATTCTGTTAGTGCCTTTGTGGCATACTTTGCAACTG-TCTTTGTGGTATATTCT
1 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGCACACTTTGCAACTGCCCTTTGTGGTATACTCT
26363720 ATAAGTGT
66 ATAAGTGT
** * * *
26363728 CTTTGTGGTGTACTATGTAAATGTCTTTGTGG
1 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGG
26363760 TGTATTCAAG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
71 22 0.26
72 63 0.74
ACGTcount: A:0.16, C:0.14, G:0.24, T:0.45
Consensus pattern (73 bp):
CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGCACACTTTGCAACTGCCCTTTGTGGTATACTCT
ATAAGTGT
Found at i:26367413 original size:88 final size:88
Alignment explanation
Indices: 26367274--26367509 Score: 313
Period size: 87 Copynumber: 2.7 Consensus size: 88
26367264 TAAAAAGCTT
** * *
26367274 TCAAACTTTTTCAACAAAAAGCAATTAAG----AATTTTTTTTGCACTCAATTGGGTACTTGAAT
1 TCAAACTTTTTCAA-AAAAAGCAATTAAGCCCTTGTTTTTTTTACACTCAATTGGGTACTTGAAC
26367335 TTTCAAAA-TGCATCAAAAAGACCC
65 TTT-AAAAGTGCATCAAAAAGACCC
* *
26367359 TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGTTTTTTTTACACTCAATTGGGTAGTTAAACT
1 TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGTTTTTTTTACACTCAATTGGGTACTTGAACT
26367424 TTAAAAGTGCATCAAAAAGACCC
66 TTAAAAGTGCATCAAAAAGACCC
* * * * *
26367447 TCAAA-ATTTTCAAAAATACCAATTAAGCCCTTGCTTTTTTTACACTCAATTAGGTACTTGAAC
1 TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGTTTTTTTTACACTCAATTGGGTACTTGAAC
26367510 CCTCCCTAAT
Statistics
Matches: 133, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
84 14 0.11
85 14 0.11
87 55 0.41
88 50 0.38
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (88 bp):
TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGTTTTTTTTACACTCAATTGGGTACTTGAACT
TTAAAAGTGCATCAAAAAGACCC
Found at i:26367707 original size:11 final size:11
Alignment explanation
Indices: 26367693--26367724 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
26367683 ATAAGCATTT
26367693 TATAATTTTTC
1 TATAATTTTTC
26367704 TATAATTTTTC
1 TATAATTTTTC
26367715 TATAACTTTT
1 TATAA-TTTT
26367725 ATTGATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (11 bp):
TATAATTTTTC
Found at i:26367889 original size:22 final size:22
Alignment explanation
Indices: 26367864--26367911 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
26367854 TTCATATGCA
26367864 TTTTACAATTTTTTATAATTTCT
1 TTTTACAA-TTTTTATAATTTCT
*
26367887 TTTTACGATTTTTATAATTT-T
1 TTTTACAATTTTTATAATTTCT
26367908 TTTT
1 TTTT
26367912 CTAATTGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 5 0.21
22 12 0.50
23 7 0.29
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTACAATTTTTATAATTTCT
Found at i:26368276 original size:94 final size:94
Alignment explanation
Indices: 26368164--26368337 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 94
26368154 GCTTAATTGC
** * * * * * *
26368164 TTTTTTTGAAAATGTTTGAGGGTCTTTTTTATGCA-TGTGAAAGTTCAAGTACTCAATTGAG-TT
1 TTTTTTTGAAAAAATTTGAGGGTCCTTTTGAGGCATTGTGAAAGTTCAAGTACCCAATTAAGCGT
26368227 CAAAAAAAAAGTAAGAGCTTAATTTATTTTA
66 -AAAAAAAAA-TAAGAGCTTAATTTATTTTA
*
26368258 TTTTTTTGAAAAAATTTGAGGGTCCTTTTGAGGCATTTTGAAAGTTCAAGTACCCAATTAAGCGT
1 TTTTTTTGAAAAAATTTGAGGGTCCTTTTGAGGCATTGTGAAAGTTCAAGTACCCAATTAAGCGT
26368323 AAAAAAAAATAAGAG
66 AAAAAAAAATAAGAG
26368338 TTCAATTACT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
94 36 0.52
95 32 0.46
96 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (94 bp):
TTTTTTTGAAAAAATTTGAGGGTCCTTTTGAGGCATTGTGAAAGTTCAAGTACCCAATTAAGCGT
AAAAAAAAATAAGAGCTTAATTTATTTTA
Found at i:26383348 original size:18 final size:18
Alignment explanation
Indices: 26383327--26383364 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26383317 TTCCAAAACA
*
26383327 TTATTC-ATTTACAAATTG
1 TTATTCAATTT-CAAAATG
26383345 TTATTCAATTTCAAAATG
1 TTATTCAATTTCAAAATG
26383363 TT
1 TT
26383365 TTTTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATTCAATTTCAAAATG
Found at i:26388168 original size:26 final size:26
Alignment explanation
Indices: 26388130--26388179 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26388120 CCGGCCGGCC
** * *
26388130 TATTTTTTTAATAAACACTAAAAATT
1 TATTTTTAAAATAAAAAATAAAAATT
26388156 TATTTTTAAAATAAAAAATAAAAA
1 TATTTTTAAAATAAAAAATAAAAA
26388180 AAGTATTTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (26 bp):
TATTTTTAAAATAAAAAATAAAAATT
Found at i:26389978 original size:38 final size:38
Alignment explanation
Indices: 26389926--26390007 Score: 155
Period size: 38 Copynumber: 2.1 Consensus size: 38
26389916 TTACAGTTTC
26389926 AGTGTTTATTAACAGATATTTTATGAAAACAGTATCAGA
1 AGTG-TTATTAACAGATATTTTATGAAAACAGTATCAGA
26389965 AGTGTTATTAACAGATATTTTATGAAAACAGTATCAGA
1 AGTGTTATTAACAGATATTTTATGAAAACAGTATCAGA
26390003 AGTGT
1 AGTGT
26390008 AAAGTTTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 39 0.91
39 4 0.09
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.35
Consensus pattern (38 bp):
AGTGTTATTAACAGATATTTTATGAAAACAGTATCAGA
Done.