Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 67 of 135
Found at i:26705737 original size:25 final size:24
Alignment explanation
Indices: 26705648--26705741 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 24
26705638 GTTTCGACCC
*
26705648 ACAGCTCTTGAGAGCATACCGATTT
1 ACAGCTCGT-AGAGCATACCGATTT
* *
26705673 ACAGCTCGCGAGAGCATACTGATTT
1 ACAGCTCG-TAGAGCATACCGATTT
* *
26705698 ATAGCTCAAGT-GAGCATACCGATTC
1 ACAGCTC--GTAGAGCATACCGATTT
26705723 ACAGCTCGTACGAGCATAC
1 ACAGCTCGTA-GAGCATAC
26705742 ATGTACAGGA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
23 2 0.04
25 53 0.95
27 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (24 bp):
ACAGCTCGTAGAGCATACCGATTT
Found at i:26707958 original size:743 final size:743
Alignment explanation
Indices: 26706533--26708024 Score: 2396
Period size: 743 Copynumber: 2.0 Consensus size: 743
26706523 AATGGCTTAA
* * * *
26706533 ATGATTATAGATACTAGTGGTTGAATGGAATTATTAGTATCATTTGGTATATTTTGGTAAGTAAA
1 ATGATTATAGATACTAGTGGTTGAATGGAATGATTACTACCATTTGATATATTTTGGTAAGTAAA
*
26706598 TGACATGATATGTATTGATGCAAATATGCATATAAGTTAGTTGATTATTTGGTCAAATTGAATAC
66 TGACATGATATGTATTGATGCAAATATGCATATAAGTTAGTTGATTATTTGGTAAAATTGAATAC
*
26706663 ATGGTTAGACATGTTTATATATTGTCATTTGAGGTGCCTAAGGGAATATTGGTTGTATGATGTTA
131 ATGGTTAGACATGTTTAGATATTGTCATTTGAGGTGCCTAAGGGAATATTGGTTGTATGATGTTA
* *
26706728 TACCATATGTATAGAACTTTCTTATGCTTGATTTGGACGCCTTGTTATGGCTTATATATATGTGC
196 TACCATATGTATAGAACTTGCTTATGCTTGATTTGGACGCCTTGTTATGACTTATATATATGTGC
*
26706793 ATTTTTGGTTATAGTTATATGCCTTGATGGGTGAGAAAAATGACTTGTAAAATGACCTATTTTCG
261 ATTTTTGGTTATAGGTATATGCCTTGATGGGTGAGAAAAATGACTTGTAAAATGACCTATTTTCG
* * * *
26706858 TCCACACAGGCAGAGACACAGACGTGTGTCTCGGCCGTGTATGACACACGGCCAAGCGACACGGC
326 CCCACACAGGCAGAGACACAGACATGTGTCTCGACCGTGTATGACACACGGCCAAGCGACACGAC
* * *
26706923 CCTGAGTCCCCTATAGCTTTCAATGGGTTACAAGTCAGACTGTTACACCGCCTAGCACACGGCCT
391 CCTGAGTCCCCTATAGCTTTCAAAGGGTTACAAGTCAGACTGTTACACAGCCTAGCACACGGACT
*
26706988 AGTACAAGGGCGTGTGAGGTTACTTCGAAGGGTGCAAAGCCTAGCACACGGGTGTGTGGCTTGGC
456 AGTACAAGGGCGTGTGAGGTTACTTCGAAGGGTACAAAGCCTAGCACACGGGTGTGTGGCTTGGC
* * * *
26707053 CGTGGGAGCCAAGTTAGTGAGTTACACGGGCACGGACACGGGCTGGGACATGGCGTTGTGTCCCT
521 CGTGGGACCCAAGTCAGTGAGTTACACGGGCACAGACACGGGCTGGGACACGGCGTTGTGTCCCT
* * * *
26707118 GCTTTGAATGCCCACACGGCCTGGTCACACGTCTGTGTGACACCTGCAGTTGAAAATTTTCAATG
586 ACATTGAATGCCCACACGGCCTGGTCAAACGCCTGTGTGACACCTGCAGTTGAAAATTTTCAATG
*
26707183 CTTTCTGAAAAATTCTCTGAGTTTCTGATTTGATCTTGACTTGTTTCTATTGCATATTTAGGGCC
651 CTTTCTGAAAAATTCTCTGAGTTTCTGATTTGATCCTGACTTGTTTCTATTGCATATTTAGGGCC
*
26707248 TTGGGGGCTCGTATAAGAGACATTATGT
716 TTGAGGGCTCGTATAAGAGACATTATGT
*
26707276 ATGATTATAGATACTAGTGGTTGAATGGTATGATTACTACCATTTGATATATTTTGGTAAGTAAA
1 ATGATTATAGATACTAGTGGTTGAATGGAATGATTACTACCATTTGATATATTTTGGTAAGTAAA
*
26707341 TTACATGATATGTATTGATGCAAATATGCATATAAGTTAGTTGATTATTTGGTAAAATTGAATAC
66 TGACATGATATGTATTGATGCAAATATGCATATAAGTTAGTTGATTATTTGGTAAAATTGAATAC
* * *
26707406 ATGGTTAGATATGTTTAGATATTGTTATTTGAGGTGCCTAAGGGCATATTGGTTGTATGATGTTA
131 ATGGTTAGACATGTTTAGATATTGTCATTTGAGGTGCCTAAGGGAATATTGGTTGTATGATGTTA
* *
26707471 TACCATATGTATAGGACTTGCTTATGCTTGATTTGGATGCCTTGTTATGACTTATATATATGTGC
196 TACCATATGTATAGAACTTGCTTATGCTTGATTTGGACGCCTTGTTATGACTTATATATATGTGC
* *
26707536 ATTTTTGGTTATAGGTATATGCCTTGATGGGTGAGAAAAATGGCTTGTAAAATGGCCTATTTTCG
261 ATTTTTGGTTATAGGTATATGCCTTGATGGGTGAGAAAAATGACTTGTAAAATGACCTATTTTCG
* * * * * *
26707601 CCCACACGGGCAGAGACAC-GAGCATGTGTCTTC-ACCGTGTGTGACACATGGCGAGGCGACACT
326 CCCACACAGGCAGAGACACAGA-CATGTGTC-TCGACCGTGTATGACACACGGCCAAGCGACACG
* * * * * * *
26707664 ACCGTGAGTTCTCTGTAGCTTTCAAAGGGTTGCAAGTCAGGCTGTTACACAGCCTAGCACATGGA
389 ACCCTGAGTCCCCTATAGCTTTCAAAGGGTTACAAGTCAGACTGTTACACAGCCTAGCACACGGA
* * * * *
26707729 CTGGTACACGGGCGTGTGAGGTTACTTCGAAGGGTATACAGCCTGGCACACGGGTGTGTGGCTTG
454 CTAGTACAAGGGCGTGTGAGGTTACTTCGAAGGGTACAAAGCCTAGCACACGGGTGTGTGGCTTG
* * *
26707794 GTCGTGTGACCCAAGTCAGTGAGTTACACGGGCACAGCCACGGGCTGGGACACGGC-TCTGTGTC
519 GCCGTGGGACCCAAGTCAGTGAGTTACACGGGCACAGACACGGGCTGGGACACGGCGT-TGTGTC
*
26707858 CCTACATTGAATGCCCACACGGCCTGGTCAAACGCCTGTGTGACCCCTGCAGTTGAAAATTTTCA
583 CCTACATTGAATGCCCACACGGCCTGGTCAAACGCCTGTGTGACACCTGCAGTTGAAAATTTTCA
*
26707923 ATGTTTTCTGAAAAATTCTCTGAGTTTCTGATTTGATCCTGACTTGTTTCTATTGCATATTTAGG
648 ATGCTTTCTGAAAAATTCTCTGAGTTTCTGATTTGATCCTGACTTGTTTCTATTGCATATTTAGG
*
26707988 GCCTTGAGGGCTCGTATAAGATACATTATGT
713 GCCTTGAGGGCTCGTATAAGAGACATTATGT
26708019 ATGATT
1 ATGATT
26708025 TTGATTGGTT
Statistics
Matches: 686, Mismatches: 60, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
742 3 0.00
743 681 0.99
744 2 0.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (743 bp):
ATGATTATAGATACTAGTGGTTGAATGGAATGATTACTACCATTTGATATATTTTGGTAAGTAAA
TGACATGATATGTATTGATGCAAATATGCATATAAGTTAGTTGATTATTTGGTAAAATTGAATAC
ATGGTTAGACATGTTTAGATATTGTCATTTGAGGTGCCTAAGGGAATATTGGTTGTATGATGTTA
TACCATATGTATAGAACTTGCTTATGCTTGATTTGGACGCCTTGTTATGACTTATATATATGTGC
ATTTTTGGTTATAGGTATATGCCTTGATGGGTGAGAAAAATGACTTGTAAAATGACCTATTTTCG
CCCACACAGGCAGAGACACAGACATGTGTCTCGACCGTGTATGACACACGGCCAAGCGACACGAC
CCTGAGTCCCCTATAGCTTTCAAAGGGTTACAAGTCAGACTGTTACACAGCCTAGCACACGGACT
AGTACAAGGGCGTGTGAGGTTACTTCGAAGGGTACAAAGCCTAGCACACGGGTGTGTGGCTTGGC
CGTGGGACCCAAGTCAGTGAGTTACACGGGCACAGACACGGGCTGGGACACGGCGTTGTGTCCCT
ACATTGAATGCCCACACGGCCTGGTCAAACGCCTGTGTGACACCTGCAGTTGAAAATTTTCAATG
CTTTCTGAAAAATTCTCTGAGTTTCTGATTTGATCCTGACTTGTTTCTATTGCATATTTAGGGCC
TTGAGGGCTCGTATAAGAGACATTATGT
Found at i:26713112 original size:25 final size:25
Alignment explanation
Indices: 26713084--26713170 Score: 129
Period size: 25 Copynumber: 3.5 Consensus size: 25
26713074 CAGCTCTTGA
26713084 GAGCATACCGATTTACAGCTCAAGT
1 GAGCATACCGATTTACAGCTCAAGT
** *
26713109 GAGCATACCGATTTACAGCTCGTGA
1 GAGCATACCGATTTACAGCTCAAGT
* *
26713134 GAGCATACTGATTTACAACTCAAGT
1 GAGCATACCGATTTACAGCTCAAGT
26713159 GAGCATACCGAT
1 GAGCATACCGAT
26713171 CACATCTTGT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (25 bp):
GAGCATACCGATTTACAGCTCAAGT
Found at i:26713148 original size:50 final size:50
Alignment explanation
Indices: 26713073--26713170 Score: 169
Period size: 50 Copynumber: 2.0 Consensus size: 50
26713063 GTTTTGACCC
* *
26713073 ACAGCTCTTGAGAGCATACCGATTTACAGCTCAAGTGAGCATACCGATTT
1 ACAGCTCGTGAGAGCATACCGATTTACAACTCAAGTGAGCATACCGATTT
*
26713123 ACAGCTCGTGAGAGCATACTGATTTACAACTCAAGTGAGCATACCGAT
1 ACAGCTCGTGAGAGCATACCGATTTACAACTCAAGTGAGCATACCGAT
26713171 CACATCTTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
ACAGCTCGTGAGAGCATACCGATTTACAACTCAAGTGAGCATACCGATTT
Found at i:26719093 original size:17 final size:17
Alignment explanation
Indices: 26719071--26719120 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
26719061 ATATCACCCT
26719071 TCTATTCCATTCAATGA
1 TCTATTCCATTCAATGA
* *
26719088 TCTATTCCATTCCCACG-
1 TCTATTCCATT-CAATGA
26719105 T-TATTCCATTCAATGA
1 TCTATTCCATTCAATGA
26719121 GCCAAATGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
15 3 0.11
16 9 0.33
17 12 0.44
18 3 0.11
ACGTcount: A:0.26, C:0.28, G:0.06, T:0.40
Consensus pattern (17 bp):
TCTATTCCATTCAATGA
Found at i:26724332 original size:55 final size:55
Alignment explanation
Indices: 26724273--26724385 Score: 190
Period size: 55 Copynumber: 2.1 Consensus size: 55
26724263 CCATTACTTA
* * *
26724273 CATAGTTTCCTCTATGAGAAACTAGACTCAATAAGATTTAGTTCCATATTTTGTT
1 CATAGTTTCCTCTATGAGAAACTAGACTCAAAAAGATTTAATTCCATATTTTGAT
*
26724328 CATAGTTTCTTCTATGAGAAACTAGACTCAAAAAGATTTAATTCCATATTTTGAT
1 CATAGTTTCCTCTATGAGAAACTAGACTCAAAAAGATTTAATTCCATATTTTGAT
26724383 CAT
1 CAT
26724386 CCTCTAATTC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.39
Consensus pattern (55 bp):
CATAGTTTCCTCTATGAGAAACTAGACTCAAAAAGATTTAATTCCATATTTTGAT
Found at i:26734987 original size:18 final size:18
Alignment explanation
Indices: 26734957--26735000 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
26734947 TATTCCATAC
26734957 GACATAAATTGTTGTCTT
1 GACATAAATTGTTGTCTT
26734975 GACACTAAA-TGTTGTCTT
1 GACA-TAAATTGTTGTCTT
26734993 GAACATAA
1 G-ACATAA
26735001 GCGTGCACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (18 bp):
GACATAAATTGTTGTCTT
Found at i:26736230 original size:78 final size:77
Alignment explanation
Indices: 26736096--26736291 Score: 257
Period size: 78 Copynumber: 2.5 Consensus size: 77
26736086 CATATTCACT
* * * * * * * *
26736096 TTTAAGCATATATCATATTACACATATAATCACCTAACAATCAAGTATATATCACAATATAGATA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAAC-ATCAAGCATATAACACAATATACATA
* *
26736161 TAATCTCTTAACA
65 TAATCGCATAACA
*
26736174 TTTAAGCATATATCACAATACTCGTATAATCACATAACATCCAAGCATATAACACAATATTCATA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACAT-CAAGCATATAACACAATATACATA
26736239 TAATCGCATAACA
65 TAATCGCATAACA
* *
26736252 TTTAAGCATATGTTACAATACTCGTATAATCACATAACAT
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACAT
26736292 TCACAATTTT
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 2 0.02
78 102 0.98
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (77 bp):
TTTAAGCATATATCACAATACTCGTATAATCACATAACATCAAGCATATAACACAATATACATAT
AATCGCATAACA
Found at i:26736291 original size:39 final size:39
Alignment explanation
Indices: 26736096--26736292 Score: 207
Period size: 39 Copynumber: 5.1 Consensus size: 39
26736086 CATATTCACT
* * * * *
26736096 TTTAAGCATATATCATATTACACATATAATCACCTAACA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACA
* * * * * *
26736135 ATCAAGTATATATCACAATA-TAGATATAATCTCTTAACA
1 TTTAAGCATATATCACAATACTCG-TATAATCACATAACA
26736174 TTTAAGCATATATCACAATACTCGTATAATCACATAACA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACA
** * * * *
26736213 TCCAAGCATATAACACAATATTCATATAATCGCATAACA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACA
* *
26736252 TTTAAGCATATGTTACAATACTCGTATAATCACATAACA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACA
26736291 TT
1 TT
26736293 CACAATTTTA
Statistics
Matches: 126, Mismatches: 30, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
39 124 0.98
40 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCGTATAATCACATAACA
Found at i:26741804 original size:30 final size:30
Alignment explanation
Indices: 26741768--26741986 Score: 261
Period size: 30 Copynumber: 7.4 Consensus size: 30
26741758 TGGTTGACAC
* *
26741768 ATCCCTTTTCATAATTCGATAACCGAAGTT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
* *
26741798 ATCCCTTTTCATAGTTCGATAACCGAAGCT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
*
26741828 ATCCGTTTTCATAAATT-GATAGCCGAAGCT
1 ATCCCTTTTCAT-AATTCGATAGCCGAAGCT
* *
26741858 ATCCTTTTTCATAGA-TCGATAGCCGAAGCC
1 ATCCCTTTTCATA-ATTCGATAGCCGAAGCT
* * * *
26741888 ATCCCTTTTCATATTTCGAT-GTCGTTA-CC
1 ATCCCTTTTCATAATTCGATAGCCG-AAGCT
26741917 ATCCCTTTTCATAA-TCGATAGCCGAAGCT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
*
26741946 ATCCCTTTTCGT-ATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
26741975 ATCCCTTTTCAT
1 ATCCCTTTTCAT
26741987 TCATCGATGA
Statistics
Matches: 164, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.04
29 61 0.37
30 93 0.57
31 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATAGCCGAAGCT
Found at i:26743706 original size:11 final size:11
Alignment explanation
Indices: 26743690--26743719 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26743680 TTTAAATGAT
26743690 ATTTTATTATC
1 ATTTTATTATC
*
26743701 ATTTTATTATT
1 ATTTTATTATC
26743712 ATTTTATT
1 ATTTTATT
26743720 TAGTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTTTATTATC
Found at i:26747033 original size:10 final size:10
Alignment explanation
Indices: 26747018--26747045 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
26747008 AGCACTTACC
26747018 ATTTCAATGT
1 ATTTCAATGT
26747028 ATTTCAATGT
1 ATTTCAATGT
26747038 ATTTCAAT
1 ATTTCAAT
26747046 CATAAACTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (10 bp):
ATTTCAATGT
Found at i:26747593 original size:30 final size:29
Alignment explanation
Indices: 26747479--26747593 Score: 131
Period size: 29 Copynumber: 3.9 Consensus size: 29
26747469 CTTATCAGTT
* *
26747479 CATCCCTTTTCATATTCGATGGTCATCAC
1 CATCCCTTTTCATAATCGATGGTCGTCAC
* * * **
26747508 CATGCCTTTTCATAATCTATGATCGAAAC
1 CATCCCTTTTCATAATCGATGGTCGTCAC
* *
26747537 AATCCCTTTTCATATTCGATGGTCGTCAC
1 CATCCCTTTTCATAATCGATGGTCGTCAC
*
26747566 CATCCCTTTTCATTAATCGATGCTCGTC
1 CATCCCTTTTCA-TAATCGATGGTCGTC
26747594 GATACGTCAT
Statistics
Matches: 68, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
29 55 0.81
30 13 0.19
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (29 bp):
CATCCCTTTTCATAATCGATGGTCGTCAC
Found at i:26756913 original size:9 final size:9
Alignment explanation
Indices: 26756886--26756920 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
26756876 AATCTAGATC
26756886 AAATAAAAT
1 AAATAAAAT
26756895 AAATATAAAT
1 AAATA-AAAT
*
26756905 AACTAAAAT
1 AAATAAAAT
26756914 AAATAAA
1 AAATAAA
26756921 TTGAACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAAAT
Found at i:26756938 original size:17 final size:17
Alignment explanation
Indices: 26756911--26756950 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
26756901 AAATAACTAA
26756911 AATAAATAAATTG-AAC
1 AATAAATAAATTGAAAC
26756927 AATAAATAAAATTGAAAC
1 AATAAAT-AAATTGAAAC
26756945 AATAAA
1 AATAAA
26756951 GAAGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 6 0.27
18 9 0.41
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (17 bp):
AATAAATAAATTGAAAC
Found at i:26768584 original size:30 final size:29
Alignment explanation
Indices: 26768548--26768621 Score: 94
Period size: 32 Copynumber: 2.4 Consensus size: 29
26768538 CGATAATTAT
*
26768548 TTTAAAATTCGTCATCTCCTAATCTAGCAG
1 TTTAAAATTCATCATCTCCTAAT-TAGCAG
26768578 TTTAAAATATTCATCATCTCCTAATTAGCAG
1 TTT-AAA-ATTCATCATCTCCTAATTAGCAG
26768609 TTTTAAATATTCA
1 -TTTAAA-ATTCA
26768622 AGGAAAAACT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
30 3 0.08
31 18 0.45
32 19 0.47
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.41
Consensus pattern (29 bp):
TTTAAAATTCATCATCTCCTAATTAGCAG
Found at i:26768610 original size:31 final size:32
Alignment explanation
Indices: 26768554--26768621 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 32
26768544 TTATTTTAAA
*
26768554 ATTCGTCATCTCCTAATCTAGCAGTTTAAAAT
1 ATTCATCATCTCCTAATCTAGCAGTTTAAAAT
*
26768586 ATTCATCATCTCCTAAT-TAGCAGTTTTAAAT
1 ATTCATCATCTCCTAATCTAGCAGTTTAAAAT
26768617 ATTCA
1 ATTCA
26768622 AGGAAAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 18 0.53
32 16 0.47
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (32 bp):
ATTCATCATCTCCTAATCTAGCAGTTTAAAAT
Found at i:26770397 original size:50 final size:51
Alignment explanation
Indices: 26770215--26770398 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 51
26770205 ATGCCAAAGT
* *** **
26770215 CATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGAAACCTCTCAACTCGGTGCCCATGC
* * * * *
26770266 CATGTCCCAGACATGGTCCTAC--GGAGGACCTCTCAACTTGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGA-AACCTCTCAACTCGGTGCCCATGC
* * * *
26770316 CATATGCCAGACATGGTCTTACATGG-GACCTCTCACCTCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGAAACCTCTCAACTCGGTGCCCATGC
26770366 CATGTCCCAGACATGGTCTTACA-GGAAACCTCT
1 CATGTCCCAGACATGGTCTTACATGGAAACCTCT
26770399 TTACCCAAAT
Statistics
Matches: 108, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
49 4 0.04
50 81 0.75
51 21 0.19
52 2 0.02
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (51 bp):
CATGTCCCAGACATGGTCTTACATGGAAACCTCTCAACTCGGTGCCCATGC
Found at i:26771647 original size:28 final size:29
Alignment explanation
Indices: 26771598--26771665 Score: 111
Period size: 28 Copynumber: 2.3 Consensus size: 29
26771588 TGACAATTAC
26771598 AGTAACAGTGTGTAGGCCTTAGCCCAATAA
1 AGTAACAGTGTG-AGGCCTTAGCCCAATAA
*
26771628 AGTAACAGTGTG-GGCCTTAGCCCAATAT
1 AGTAACAGTGTGAGGCCTTAGCCCAATAA
26771656 AGTAACAGTG
1 AGTAACAGTG
26771666 CAATGCAGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
28 25 0.68
30 12 0.32
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (29 bp):
AGTAACAGTGTGAGGCCTTAGCCCAATAA
Found at i:26772050 original size:27 final size:27
Alignment explanation
Indices: 26772020--26772079 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
26772010 CATCTTCTAG
26772020 GGGTATAAAAGTCATTTTACACTAT-GA
1 GGGTATAAAAGTCATTTTACACT-TCGA
*** *
26772047 GGGTATTTCAGTCATTTTACCCTTCGA
1 GGGTATAAAAGTCATTTTACACTTCGA
26772074 GGGTAT
1 GGGTAT
26772080 TTTGATCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (27 bp):
GGGTATAAAAGTCATTTTACACTTCGA
Found at i:26772080 original size:27 final size:27
Alignment explanation
Indices: 26772029--26772467 Score: 398
Period size: 27 Copynumber: 16.3 Consensus size: 27
26772019 GGGGTATAAA
*
26772029 AGTCATTTTACACTAT-GAGGGTATTTC
1 AGTCATTTTACCCT-TCGAGGGTATTTC
26772056 AGTCATTTTACCCTTCGAGGGTATTT-
1 AGTCATTTTACCCTTCGAGGGTATTTC
* **
26772082 TGATCATTTTACCCTTTAAGGGTATTTC
1 AG-TCATTTTACCCTTCGAGGGTATTTC
*
26772110 -GATCATTTTACCTTTCGAGGGTATTTC
1 AG-TCATTTTACCCTTCGAGGGTATTTC
*
26772137 GGTCATTTTACCCTTCGAGGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
*
26772164 AATCATTTTACCCTTC-AGGGGTATTTC
1 AGTCATTTTACCCTTCGA-GGGTATTTC
* * *
26772191 AATCCTTTTACCCTATGGA-GGTATTTC
1 AGTCATTTTACCCT-TCGAGGGTATTTC
* *
26772218 -GATCATTTTACCCTTTGAGGGTGTTTC
1 AG-TCATTTTACCCTTCGAGGGTATTTC
* *
26772245 -GATCATTTTACCCTT-TAGGGGTAATTC
1 AG-TCATTTTACCCTTCGA-GGGTATTTC
* * **
26772272 AATCATTTTACCCATAAAGGGTATTT-
1 AGTCATTTTACCCTTCGAGGGTATTTC
* * * *
26772298 TGATCATTTTACAC-TCAAGGGTATTTT
1 AG-TCATTTTACCCTTCGAGGGTATTTC
*
26772325 AGTCATTTTACCTTTCGAGGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
* *
26772352 GGTCATTTTACCCTTCAAGGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
*
26772379 ATTCATTTTACCCTAT-GAGGGTATTTC
1 AGTCATTTTACCCT-TCGAGGGTATTTC
* * * *
26772406 GGTCATTTTACCCTCCG-GGGTAATAC
1 AGTCATTTTACCCTTCGAGGGTATTTC
* * *
26772432 GGTCATTTTACCCTTCGGGGGTAATTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
*
26772459 AATCATTTT
1 AGTCATTTT
26772468 TCACCTCTCA
Statistics
Matches: 347, Mismatches: 47, Indels: 36
0.81 0.11 0.08
Matches are distributed among these distances:
26 50 0.14
27 292 0.84
28 4 0.01
29 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (27 bp):
AGTCATTTTACCCTTCGAGGGTATTTC
Found at i:26788075 original size:55 final size:55
Alignment explanation
Indices: 26788011--26788114 Score: 199
Period size: 55 Copynumber: 1.9 Consensus size: 55
26788001 TACCTCTTTA
*
26788011 ATATTTTGAATGTGTAAGAAGTCAGTAACTCAATTTGGTATCGATACCAAATTGC
1 ATATTTTGAATGTGTAAGAAGTCAGTAACTCAATTTGGTAACGATACCAAATTGC
26788066 ATATTTTGAATGTGTAAGAAGTCAGTAACTCAATTTGGTAACGATACCA
1 ATATTTTGAATGTGTAAGAAGTCAGTAACTCAATTTGGTAACGATACCA
26788115 TATCACGAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (55 bp):
ATATTTTGAATGTGTAAGAAGTCAGTAACTCAATTTGGTAACGATACCAAATTGC
Found at i:26789892 original size:6 final size:6
Alignment explanation
Indices: 26789878--26789914 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
26789868 TAGGTTTCCA
*
26789878 AAATGG AAATTG AAATGG AAATGG AAA--G AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAA
26789915 GGATTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
4 4 0.15
6 23 0.85
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.16
Consensus pattern (6 bp):
AAATGG
Found at i:26790099 original size:25 final size:26
Alignment explanation
Indices: 26790064--26790118 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
26790054 TATTTTCTCA
*
26790064 AAATTTGACTAGGGGTAAAATTGTC-
1 AAATTTGACTAGGGGTAAAATCGTCT
*
26790089 AAATTTTACTAGGGGTAAAATCGTCT
1 AAATTTGACTAGGGGTAAAATCGTCT
26790115 AAAT
1 AAAT
26790119 ATAGAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 23 0.85
26 4 0.15
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (26 bp):
AAATTTGACTAGGGGTAAAATCGTCT
Found at i:26793176 original size:25 final size:24
Alignment explanation
Indices: 26793146--26793218 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
26793136 GGACACACCA
*
26793146 CATCTTGTATGAGCTTACTGATTTT
1 CATCTTGTATGAGCTTACCGA-TTT
26793171 CATCTTGTGA-GAGCTTACCGATTT
1 CATCTTGT-ATGAGCTTACCGATTT
* ** *
26793195 CAGCTCATATGAGCTTATCGATTT
1 CATCTTGTATGAGCTTACCGATTT
26793219 ACAGCTCGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 21 0.51
25 18 0.44
26 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (24 bp):
CATCTTGTATGAGCTTACCGATTT
Found at i:26793241 original size:25 final size:25
Alignment explanation
Indices: 26793186--26793262 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
26793176 TGTGAGAGCT
*
26793186 TACCGATTT-CAGCTCATATGAGCT-
1 TACCGATTTACAGCTCGTATGAG-TA
* *
26793210 TATCGATTTACAGCTCGTAAGAGTA
1 TACCGATTTACAGCTCGTATGAGTA
* *
26793235 TACCGATTCATAGCTCGTATGAGTA
1 TACCGATTTACAGCTCGTATGAGTA
26793260 TAC
1 TAC
26793263 ATGTACAAGA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 9 0.20
25 35 0.80
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (25 bp):
TACCGATTTACAGCTCGTATGAGTA
Found at i:26797646 original size:24 final size:24
Alignment explanation
Indices: 26797613--26797668 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
26797603 TAAAATTGGC
26797613 AAAGCATGTCATGCACATATGAGA
1 AAAGCATGTCATGCACATATGAGA
* *
26797637 TAAGCATGTCTTGCACATATGAGA
1 AAAGCATGTCATGCACATATGAGA
26797661 AAAGCATG
1 AAAGCATG
26797669 CCATATAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (24 bp):
AAAGCATGTCATGCACATATGAGA
Found at i:26809950 original size:17 final size:17
Alignment explanation
Indices: 26809924--26809987 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 17
26809914 GGCAACCCAA
26809924 TTTTTA-TTTTTATTAT
1 TTTTTATTTTTTATTAT
26809940 TTTTTATTTTTTATTTACT
1 TTTTTATTTTTTA-TTA-T
*
26809959 TTATTTATTACTTTATT-T
1 TT-TTTATT-TTTTATTAT
26809977 TATTTTATTTT
1 T-TTTTATTTT
26809988 ACTTATTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
16 6 0.15
17 7 0.17
18 11 0.28
19 4 0.10
20 8 0.20
21 4 0.10
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTTATTAT
Found at i:26809966 original size:27 final size:25
Alignment explanation
Indices: 26809932--26809995 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
26809922 AATTTTTATT
*
26809932 TTTATTATTTTTTATTTTTTATTTAC
1 TTTATTATTTTTTATTTTAT-TTTAC
* *
26809958 TTTATTTATTACTTTATTTTATTTTAT
1 TTTA-TTATT-TTTTATTTTATTTTAC
26809985 TTTACTTATTT
1 TTTA-TTATTT
26809996 GGATATTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
26 4 0.13
27 18 0.58
28 9 0.29
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (25 bp):
TTTATTATTTTTTATTTTATTTTAC
Found at i:26809971 original size:12 final size:12
Alignment explanation
Indices: 26809936--26809976 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
26809926 TTTATTTTTA
*
26809936 TTATTTTTTA-T
1 TTATTTATTACT
26809947 TT-TTTATTTACT
1 TTATTTA-TTACT
26809959 TTATTTATTACT
1 TTATTTATTACT
26809971 TTATTT
1 TTATTT
26809977 TATTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
10 3 0.12
11 5 0.19
12 14 0.54
13 4 0.15
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (12 bp):
TTATTTATTACT
Found at i:26816261 original size:12 final size:12
Alignment explanation
Indices: 26816244--26816270 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26816234 TCAGGCAGTT
26816244 ACATGGCCTAGC
1 ACATGGCCTAGC
26816256 ACATGGCCTAGC
1 ACATGGCCTAGC
26816268 ACA
1 ACA
26816271 CGGGCGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.15
Consensus pattern (12 bp):
ACATGGCCTAGC
Found at i:26822499 original size:38 final size:38
Alignment explanation
Indices: 26822455--26822531 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
26822445 AAATAAAAAA
26822455 TGTCCAATGTCCAAGTCCAATTACAACCAAAATTAAAT
1 TGTCCAATGTCCAAGTCCAATTACAACCAAAATTAAAT
*
26822493 TGTCCAATGTTCAAGTCCAATTACAACCAAAATTAAAT
1 TGTCCAATGTCCAAGTCCAATTACAACCAAAATTAAAT
26822531 T
1 T
26822532 AAGTCTCGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (38 bp):
TGTCCAATGTCCAAGTCCAATTACAACCAAAATTAAAT
Found at i:26824518 original size:15 final size:15
Alignment explanation
Indices: 26824495--26824524 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26824485 TTATCATTAT
*
26824495 TCATTAAAATTAAGA
1 TCATAAAAATTAAGA
26824510 TCATAAAAATTAAGA
1 TCATAAAAATTAAGA
26824525 CTTTATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (15 bp):
TCATAAAAATTAAGA
Found at i:26837109 original size:17 final size:17
Alignment explanation
Indices: 26837087--26837122 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26837077 AAATCCCAGA
26837087 TTTTGATACCCATATCT
1 TTTTGATACCCATATCT
26837104 TTTTGATACCCATATCT
1 TTTTGATACCCATATCT
26837121 TT
1 TT
26837123 GACTTTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (17 bp):
TTTTGATACCCATATCT
Found at i:26841717 original size:17 final size:17
Alignment explanation
Indices: 26841695--26841744 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
26841685 TCTCAAATTT
26841695 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
26841712 TGATACCTATATCTTTC
1 TGATACCCATATCTTTC
26841729 TGATACCCATATCTTT
1 TGATACCCATATCTTT
26841745 GACTTTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:26843245 original size:19 final size:21
Alignment explanation
Indices: 26843201--26843245 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 21
26843191 TTACCCAAAA
* *
26843201 CTCCCAAACTTTTTTACTTTC
1 CTCCCAAACATTTTTACTTCC
26843222 C-CCCAAA-ATTTTTAC-TCC
1 CTCCCAAACATTTTTACTTCC
26843240 CTCCCA
1 CTCCCA
26843246 CTTTTCCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 3 0.14
19 11 0.52
20 6 0.29
21 1 0.05
ACGTcount: A:0.22, C:0.40, G:0.00, T:0.38
Consensus pattern (21 bp):
CTCCCAAACATTTTTACTTCC
Found at i:26866751 original size:22 final size:22
Alignment explanation
Indices: 26866725--26866769 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
26866715 ATTATGTGTA
26866725 TTAATTCATAATATAA-TTAATT
1 TTAATTCA-AATATAATTTAATT
* *
26866747 TTAATTTAAATCTAATTTAATT
1 TTAATTCAAATATAATTTAATT
26866769 T
1 T
26866770 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATTCAAATATAATTTAATT
Found at i:26866942 original size:154 final size:154
Alignment explanation
Indices: 26866662--26866970 Score: 602
Period size: 154 Copynumber: 2.0 Consensus size: 154
26866652 CAAAACCAAG
26866662 AAGCAATTTTTAAGCATCAAGGTGAAATTATTTTTCAGCTAAATATGGTCCAAATTATGTGTATT
1 AAGCAATTTTTAAGCATCAAGGTGAAATTATTTTTCAGCTAAATATGGTCCAAATTATGTGTATT
26866727 AATTCATAATATAATTAATTTTAATTTAAATCTAATTTAATTTGGGTTAAATAAATTATTGTTAA
66 AATTCATAATATAATTAATTTTAATTTAAATCTAATTTAATTTGGGTTAAATAAATTATTGTTAA
26866792 TTAATTATGAAAAGGGGCCCAGTT
131 TTAATTATGAAAAGGGGCCCAGTT
26866816 AAGCAATTTTTAAGCATCAAGGTGAAATTATTTTTCAGCTAAATATGGTCCAAATTATGTGTATT
1 AAGCAATTTTTAAGCATCAAGGTGAAATTATTTTTCAGCTAAATATGGTCCAAATTATGTGTATT
26866881 AATTCATAATATAATTAATTTTAATTTAAATCTAAATTTAATTT-GGTTAAATAAATTATTGTTA
66 AATTCATAATATAATTAATTTTAATTTAAATCT-AATTTAATTTGGGTTAAATAAATTATTGTTA
26866945 ATTAATTATGAAAAGGGGCCCAGTT
130 ATTAATTATGAAAAGGGGCCCAGTT
26866970 A
1 A
26866971 TGCTAAACCA
Statistics
Matches: 154, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
154 144 0.94
155 10 0.06
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.41
Consensus pattern (154 bp):
AAGCAATTTTTAAGCATCAAGGTGAAATTATTTTTCAGCTAAATATGGTCCAAATTATGTGTATT
AATTCATAATATAATTAATTTTAATTTAAATCTAATTTAATTTGGGTTAAATAAATTATTGTTAA
TTAATTATGAAAAGGGGCCCAGTT
Found at i:26869317 original size:54 final size:54
Alignment explanation
Indices: 26869240--26869572 Score: 451
Period size: 54 Copynumber: 6.2 Consensus size: 54
26869230 GGGTATAACA
** * *
26869240 ATCATTTTACCCTTCGAATGTATTTTGGTCATTTTACCCTT-AGAAGGTATTTC-
1 ATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAG-GGGTATTTCG
* *
26869293 AGTCATTTTACCCTTCAAGGGTA-TTTCGATCATTTTACCCTTCAGGGGTATTTCG
1 A-TCATTTTACCCTTCGAGGGTATTTTAG-TCATTTTACCCTTCAGGGGTATTTCG
* * *
26869348 ATCATTTTACCCTTCGGGGGTATTTTGGTTATTTTACCCTTCAGGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAGGGGTATTTCG
26869402 ATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAGGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAGGGGTATTTCG
*
26869456 ATCATTTTAACCTTCGAGGGTATTTTAGTCATTTTACCCTTC-GAGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAG-GGGTATTTCG
* * *
26869510 GTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCATT-AAGGGTATTTCG
1 ATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCC-TTCAGGGGTATTTCG
* *
26869564 GTTATTTTA
1 ATCATTTTA
26869573 GGCCTAGTAC
Statistics
Matches: 254, Mismatches: 18, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
53 6 0.02
54 239 0.94
55 9 0.04
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (54 bp):
ATCATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAGGGGTATTTCG
Found at i:26869370 original size:81 final size:81
Alignment explanation
Indices: 26869240--26869572 Score: 408
Period size: 81 Copynumber: 4.1 Consensus size: 81
26869230 GGGTATAACA
** * * * *
26869240 ATCATTTTACCCTTCGAATGTATTTTGGTCATTTTACCCTTAGAAGGTATTTCAGTCATTTTACC
1 ATCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
26869305 CTTCAAGGGTATTTCG
66 CTTCAAGGGTATTTCG
* ** *
26869321 ATCATTTTACCCTTC-AGGGGTATTTCGATCATTTTACCCTTCGGGGGTATTTTGGTTATTTTAC
1 ATCATTTTACCCTTCGA-GGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTAC
*
26869385 CCTTCAGGGGTATTTCG
65 CCTTCAAGGGTATTTCG
*
26869402 ATCATTTTACCCTTCGAGGGTATTT-TAGTCATTTTACCCTTC-AGGGGTATTTC-GATCATTTT
1 ATCATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTCGA-GGGTATTTCAG-TCATTTT
* * *
26869464 AACCTTCGAGGGTATTT-T
63 ACCCTTCAAGGGTATTTCG
*
26869482 AGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTAC
1 A-TCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTAC
26869547 CCATT-AAGGGTATTTCG
65 CC-TTCAAGGGTATTTCG
* *
26869564 GTTATTTTA
1 ATCATTTTA
26869573 GGCCTAGTAC
Statistics
Matches: 215, Mismatches: 26, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
80 4 0.02
81 206 0.96
82 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (81 bp):
ATCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACC
CTTCAAGGGTATTTCG
Found at i:26869556 original size:27 final size:26
Alignment explanation
Indices: 26869241--26869572 Score: 346
Period size: 27 Copynumber: 12.3 Consensus size: 26
26869231 GGTATAACAA
* *
26869241 TCATTTTACCCTTCGAA-TGTATTTTGG
1 TCATTTTACCCTTC-AAGGGTA-TTTCG
*
26869268 TCATTTTACCCTT-AGAAGGTATTTCAG
1 TCATTTTACCCTTCA-AGGGTATTTC-G
26869295 TCATTTTACCCTTCAAGGGTATTTCG
1 TCATTTTACCCTTCAAGGGTATTTCG
*
26869321 ATCATTTTACCCTTCAGGGGTATTTCG
1 -TCATTTTACCCTTCAAGGGTATTTCG
** *
26869348 ATCATTTTACCCTTCGGGGGTATTTTGG
1 -TCATTTTACCCTTCAAGGGTA-TTTCG
* *
26869376 TTATTTTACCCTTCAGGGGTATTTCG
1 TCATTTTACCCTTCAAGGGTATTTCG
* *
26869402 ATCATTTTACCCTTCGAGGGTATTTTAG
1 -TCATTTTACCCTTCAAGGGTA-TTTCG
*
26869430 TCATTTTACCCTTCAGGGGTATTTCG
1 TCATTTTACCCTTCAAGGGTATTTCG
* * *
26869456 ATCATTTTAACCTTCGAGGGTATTTTAG
1 -TCATTTTACCCTTCAAGGGTA-TTTCG
*
26869484 TCATTTTACCCTTCGAGGGTATTTCGG
1 TCATTTTACCCTTCAAGGGTATTTC-G
*
26869511 TCATTTTACCCTTCGAGGGTATTTCAG
1 TCATTTTACCCTTCAAGGGTATTTC-G
26869538 TCATTTTACCCATT-AAGGGTATTTCGG
1 TCATTTTACCC-TTCAAGGGTATTTC-G
*
26869565 TTATTTTA
1 TCATTTTA
26869573 GGCCTAGTAC
Statistics
Matches: 267, Mismatches: 26, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.00
26 16 0.06
27 235 0.88
28 15 0.06
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.43
Consensus pattern (26 bp):
TCATTTTACCCTTCAAGGGTATTTCG
Found at i:26872249 original size:39 final size:39
Alignment explanation
Indices: 26872153--26872251 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 39
26872143 GTTCACTTTT
* * *
26872153 AAGCATATATCACATTACACATATAATCACATAAAATTT
1 AAGCATATATCACAATACTCATATAATCACATAAAATTC
* * *
26872192 AAGCATATATAACAATACTCATATATTCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAAAATTC
26872231 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
26872252 AAAACATGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAAAATTC
Found at i:26875916 original size:28 final size:28
Alignment explanation
Indices: 26875876--26875932 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
26875866 TTGCAAAGTA
26875876 TATCGTGTTGGTGTTGAGACCATGAAGG
1 TATCGTGTTGGTGTTGAGACCATGAAGG
*
26875904 TATCGTGTTGGTGTTGGGACCATGAAGG
1 TATCGTGTTGGTGTTGAGACCATGAAGG
26875932 T
1 T
26875933 CTTACGCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.19, C:0.11, G:0.37, T:0.33
Consensus pattern (28 bp):
TATCGTGTTGGTGTTGAGACCATGAAGG
Found at i:26877843 original size:28 final size:28
Alignment explanation
Indices: 26877803--26877859 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
26877793 TTGCAAAGTA
26877803 TATCGTGTTGGTGTTGAGACCATGAAGG
1 TATCGTGTTGGTGTTGAGACCATGAAGG
*
26877831 TATCGTGTTGGTGTTGGGACCATGAAGG
1 TATCGTGTTGGTGTTGAGACCATGAAGG
26877859 T
1 T
26877860 CTTACGCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.19, C:0.11, G:0.37, T:0.33
Consensus pattern (28 bp):
TATCGTGTTGGTGTTGAGACCATGAAGG
Found at i:26880518 original size:43 final size:42
Alignment explanation
Indices: 26880464--26880597 Score: 103
Period size: 42 Copynumber: 3.2 Consensus size: 42
26880454 TCAGATAAAT
*
26880464 CAAAGCGAATATACCAACACACAT-AGTGCACCATC-GAACGAAC
1 CAAAGCAAATATA--AACACACATAAGTGCACCATCAGAA-GAAC
* ** *
26880507 CAAATCAAATATAATGACACATAAGTGCATCATCAGAAGAAC
1 CAAAGCAAATATAAACACACATAAGTGCACCATCAGAAGAAC
* * * * * * *
26880549 CTAAGCAAATATATTAGA-ACATAAGTGCATCATCGGATGAAT
1 CAAAGCAAATATA-AACACACATAAGTGCACCATCAGAAGAAC
26880591 CAAAGCA
1 CAAAGCA
26880598 TAAACCCACG
Statistics
Matches: 75, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
41 7 0.09
42 52 0.69
43 16 0.21
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.18
Consensus pattern (42 bp):
CAAAGCAAATATAAACACACATAAGTGCACCATCAGAAGAAC
Found at i:26880549 original size:42 final size:43
Alignment explanation
Indices: 26880482--26880597 Score: 132
Period size: 42 Copynumber: 2.8 Consensus size: 43
26880472 ATATACCAAC
* *
26880482 ACACAT-AGTGCACCATCGAACGAACCAAATCAAATATAAT-G
1 ACACATAAGTGCATCATCGAACGAACCAAAGCAAATATAATAG
* *
26880523 ACACATAAGTGCATCATCAGAA-GAACCTAAGCAAATATATTAG
1 ACACATAAGTGCATCATC-GAACGAACCAAAGCAAATATAATAG
* * *
26880566 A-ACATAAGTGCATCATCGGATGAATCAAAGCA
1 ACACATAAGTGCATCATCGAACGAACCAAAGCA
26880598 TAAACCCACG
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
41 8 0.12
42 51 0.80
43 5 0.08
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.19
Consensus pattern (43 bp):
ACACATAAGTGCATCATCGAACGAACCAAAGCAAATATAATAG
Found at i:26889871 original size:15 final size:15
Alignment explanation
Indices: 26889823--26889874 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 15
26889813 GTTATCTGGC
26889823 AACGATGACTACTAA
1 AACGATGACTACTAA
26889838 AAC-ATGTACATATTACTAA
1 AACGATG-AC----TACTAA
26889857 AACGATGACTACTAA
1 AACGATGACTACTAA
26889872 AAC
1 AAC
26889875 ATGCCTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
14 3 0.10
15 14 0.45
19 11 0.35
20 3 0.10
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.23
Consensus pattern (15 bp):
AACGATGACTACTAA
Found at i:26905532 original size:7 final size:7
Alignment explanation
Indices: 26905522--26905563 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
26905512 AAACGAAAAC
26905522 GGAGAAA
1 GGAGAAA
26905529 GGAGAAA
1 GGAGAAA
26905536 GGAGAAA
1 GGAGAAA
26905543 GGAGAAA
1 GGAGAAA
26905550 GGAGAAA
1 GGAGAAA
26905557 GGAGAAA
1 GGAGAAA
26905564 AAAAAAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (7 bp):
GGAGAAA
Found at i:26905548 original size:21 final size:22
Alignment explanation
Indices: 26905506--26905563 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 22
26905496 AAACACAAAA
*
26905506 AAAGGA-AAACGA-AAACGGAG
1 AAAGGAGAAAGGAGAAACGGAG
26905526 AAAGGAGAAAGGAGAAA-GGAG
1 AAAGGAGAAAGGAGAAACGGAG
26905547 AAAGGAGAAAGGAGAAA
1 AAAGGAGAAAGGAGAAA
26905564 AAAAAAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 6 0.17
21 26 0.74
22 3 0.09
ACGTcount: A:0.60, C:0.03, G:0.36, T:0.00
Consensus pattern (22 bp):
AAAGGAGAAAGGAGAAACGGAG
Found at i:26905744 original size:1 final size:1
Alignment explanation
Indices: 26905693--26905733 Score: 82
Period size: 1 Copynumber: 41.0 Consensus size: 1
26905683 TTGTAAAAGC
26905693 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26905734 TCCCAAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26911329 original size:6 final size:6
Alignment explanation
Indices: 26911313--26911362 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
26911303 TGTAATCCAT
*
26911313 TTTTGG GTTTGG TTTTGG TTTTGG TTTTGG TTTT-G TTTT-G TTTT-G
1 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG
26911358 TTTTG
1 TTTTG
26911363 CATTGCTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
5 15 0.37
6 26 0.63
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (6 bp):
TTTTGG
Found at i:26911352 original size:5 final size:5
Alignment explanation
Indices: 26911319--26911362 Score: 52
Period size: 5 Copynumber: 8.2 Consensus size: 5
26911309 CCATTTTTGG
*
26911319 GTTTG GTTTT GGTTTT GGTTTT GGTTTT GTTTT GTTTT GTTTT G
1 GTTTT GTTTT -GTTTT -GTTTT -GTTTT GTTTT GTTTT GTTTT G
26911363 CATTGCTTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
5 20 0.54
6 17 0.46
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (5 bp):
GTTTT
Found at i:26918922 original size:14 final size:15
Alignment explanation
Indices: 26918903--26918934 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26918893 GTGGTTATAG
26918903 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
26918917 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
26918932 TTA
1 TTA
26918935 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:26925191 original size:21 final size:21
Alignment explanation
Indices: 26925165--26925207 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26925155 ATAATGGGGG
* *
26925165 TTAGTGAAAGGTAGACCAAAA
1 TTAGTGAAAGGAACACCAAAA
26925186 TTAGTGAAAGGAACACCAAAA
1 TTAGTGAAAGGAACACCAAAA
26925207 T
1 T
26925208 AATATGAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.12, G:0.21, T:0.19
Consensus pattern (21 bp):
TTAGTGAAAGGAACACCAAAA
Found at i:26932565 original size:50 final size:50
Alignment explanation
Indices: 26932454--26932639 Score: 164
Period size: 50 Copynumber: 3.7 Consensus size: 50
26932444 TTATAAGAGG
* * * * **
26932454 TCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* *
26932504 TCCCCA-ATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 T-CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * **
26932554 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA--G-TACAAGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAG-AAC
** * *
26932602 ATCCCATGTAAGAATATGTCTAGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
26932640 TGTTATTATC
Statistics
Matches: 111, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
47 4 0.04
48 4 0.04
49 34 0.31
50 65 0.59
51 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:26932866 original size:20 final size:20
Alignment explanation
Indices: 26932841--26932889 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
26932831 TGAGTTATTT
26932841 AAGTAAGCAAGGAAGTAAAC
1 AAGTAAGCAAGGAAGTAAAC
* *
26932861 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGGAAGTAAAC
26932881 AAG-AAGCAA
1 AAGTAAGCAA
26932890 AGACCATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.57, C:0.06, G:0.27, T:0.10
Consensus pattern (20 bp):
AAGTAAGCAAGGAAGTAAAC
Found at i:26934783 original size:66 final size:63
Alignment explanation
Indices: 26934670--26934795 Score: 155
Period size: 66 Copynumber: 2.0 Consensus size: 63
26934660 ATCGCTATTA
* * * ***
26934670 TTTTAAATTATTTTGTTTTTTATATAAAATTTATTTTAAATTTTAATTAACTTT-TTTCTTGAT
1 TTTTAAATTATTTTGATTTTTAAAAAAAATTTATTTTAAACAATAATTAA-TTTATTTCTTGAT
26934733 TTTTAAATTTAATTTTGATTTTTAAAAATAAATTTATTTTAAACAATAATTAATTTATTTCTT
1 TTTTAAA-TT-ATTTTGATTTTTAAAAA-AAATTTATTTTAAACAATAATTAATTTATTTCTT
26934796 TTATTAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
63 7 0.13
64 2 0.04
65 17 0.32
66 27 0.51
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (63 bp):
TTTTAAATTATTTTGATTTTTAAAAAAAATTTATTTTAAACAATAATTAATTTATTTCTTGAT
Found at i:26934820 original size:19 final size:19
Alignment explanation
Indices: 26934728--26934824 Score: 74
Period size: 19 Copynumber: 5.1 Consensus size: 19
26934718 AACTTTTTTC
*
26934728 TTGATTTTTAAATTTAATT
1 TTGATTTTTAAAATTAATT
* *
26934747 TTGATTTTTAAAAATAAAT
1 TTGATTTTTAAAATTAATT
*
26934766 TT-A-TTTTAAACAATAATT
1 TTGATTTTTAAA-ATTAATT
* **
26934784 AATTTATTTCTT-TTATTAATT
1 --TTGATTT-TTAAAATTAATT
26934805 TTGATTTTTAAAATTAATT
1 TTGATTTTTAAAATTAATT
26934824 T
1 T
26934825 CGTTTTAATC
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
17 7 0.11
18 9 0.15
19 32 0.52
20 2 0.03
21 7 0.11
22 2 0.03
23 2 0.03
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (19 bp):
TTGATTTTTAAAATTAATT
Found at i:26934864 original size:33 final size:33
Alignment explanation
Indices: 26934841--26934930 Score: 153
Period size: 33 Copynumber: 2.7 Consensus size: 33
26934831 AATCTATTTA
*
26934841 ATTTTACAGCCATATTTAATTTTAAAATTAAAT
1 ATTTTACAACCATATTTAATTTTAAAATTAAAT
*
26934874 ATTTTACAACCATATTGAATTTTAAAATTAAAT
1 ATTTTACAACCATATTTAATTTTAAAATTAAAT
*
26934907 ATTTTAAAACCATATTTAATTTTA
1 ATTTTACAACCATATTTAATTTTA
26934931 CAATCATATT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (33 bp):
ATTTTACAACCATATTTAATTTTAAAATTAAAT
Found at i:26934879 original size:15 final size:15
Alignment explanation
Indices: 26934859--26934915 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
26934849 GCCATATTTA
26934859 ATTTTAAAATTAAAT
1 ATTTTAAAATTAAAT
**
26934874 ATTTTACAACCATATTGA-
1 ATTTTA-AA--AT-TAAAT
26934892 ATTTTAAAATTAAAT
1 ATTTTAAAATTAAAT
26934907 ATTTTAAAA
1 ATTTTAAAA
26934916 CCATATTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
14 2 0.06
15 17 0.52
16 2 0.06
17 2 0.06
18 8 0.24
19 2 0.06
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (15 bp):
ATTTTAAAATTAAAT
Found at i:26934897 original size:18 final size:18
Alignment explanation
Indices: 26934835--26934999 Score: 93
Period size: 18 Copynumber: 9.7 Consensus size: 18
26934825 CGTTTTAATC
*
26934835 TATTTAATTTTACAGCCA
1 TATTTAATTTTACAACCA
26934853 TATTTAATTTTA-AA--A
1 TATTTAATTTTACAACCA
**
26934868 T-TAAATATTTTACAACCA
1 TATTTA-ATTTTACAACCA
*
26934886 TATTGAATTTTA-AA--A
1 TATTTAATTTTACAACCA
** *
26934901 T-TAAATATTTTAAAACCA
1 TATTTA-ATTTTACAACCA
*
26934919 TATTTAATTTTACAATCA
1 TATTTAATTTTACAACCA
* *
26934937 TATTTAATTTTACTA--T
1 TATTTAATTTTACAACCA
** *
26934953 TAAAT-ATTTTACAACGA
1 TATTTAATTTTACAACCA
*
26934970 TATTTAATTTTA-AAGCAA
1 TATTTAATTTTACAA-CCA
26934988 TATTTAATTTTA
1 TATTTAATTTTA
26935000 TTTTACAACC
Statistics
Matches: 113, Mismatches: 20, Indels: 28
0.70 0.12 0.17
Matches are distributed among these distances:
14 4 0.04
15 24 0.21
16 7 0.06
17 8 0.07
18 66 0.58
19 4 0.04
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.47
Consensus pattern (18 bp):
TATTTAATTTTACAACCA
Found at i:26934929 original size:51 final size:51
Alignment explanation
Indices: 26934874--26934999 Score: 173
Period size: 51 Copynumber: 2.5 Consensus size: 51
26934864 AAAATTAAAT
*
26934874 ATTTTACAACCATATTGAATTTTAAAATTAAATATTTTAAAACCATATTTA
1 ATTTTACAACCATATTTAATTTTAAAATTAAATATTTTAAAACCATATTTA
* ** * *
26934925 ATTTTACAATCATATTTAATTTTACTATTAAATATTTTACAACGATATTTA
1 ATTTTACAACCATATTTAATTTTAAAATTAAATATTTTAAAACCATATTTA
*
26934976 ATTTTA-AAGCAATATTTAATTTTA
1 ATTTTACAA-CCATATTTAATTTTA
26935000 TTTTACAACC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
50 2 0.03
51 64 0.97
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (51 bp):
ATTTTACAACCATATTTAATTTTAAAATTAAATATTTTAAAACCATATTTA
Found at i:26944102 original size:22 final size:23
Alignment explanation
Indices: 26944074--26944128 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
26944064 CGATTTATCA
26944074 CATTTTTACT-GCAGCTTGTCTG
1 CATTTTTACTGGCAGCTTGTCTG
*
26944096 CATTTTTACTGGTAGCTTGTCTG
1 CATTTTTACTGGCAGCTTGTCTG
*
26944119 AATTTTTACT
1 CATTTTTACT
26944129 AGCATAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 10 0.33
23 20 0.67
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (23 bp):
CATTTTTACTGGCAGCTTGTCTG
Found at i:26955749 original size:808 final size:808
Alignment explanation
Indices: 26954193--26955808 Score: 3216
Period size: 808 Copynumber: 2.0 Consensus size: 808
26954183 GCTTACAAAT
26954193 TGAGCATTTAAAATATGAAATTCATGTTCATTAATCAACTTATATGGAAAAGATATTATAGAAAT
1 TGAGCATTTAAAATATGAAATTCATGTTCATTAATCAACTTATATGGAAAAGATATTATAGAAAT
26954258 TTTACATGGATAAAGCAACCAATTAAGTACTCTGATGGTTGTATGATCGTTAGATGTGAATAAAG
66 TTTACATGGATAAAGCAACCAATTAAGTACTCTGATGGTTGTATGATCGTTAGATGTGAATAAAG
26954323 ATCAATTTTCTCCTTGTGAGAATGATGAAGAGTTTCTTGGTCCTGAAGTACCATATCTAAGTGCC
131 ATCAATTTTCTCCTTGTGAGAATGATGAAGAGTTTCTTGGTCCTGAAGTACCATATCTAAGTGCC
26954388 ATAGGGGCATTGATGTATCTTGCAAACAACACAAGACCTGACATAGCTTTCACTGTAAACTTGTT
196 ATAGGGGCATTGATGTATCTTGCAAACAACACAAGACCTGACATAGCTTTCACTGTAAACTTGTT
26954453 AGCAAGATTTAGTTCTTCTCCAACATGTAGACATTGGAATGGAATTAAACATATATTTAAATATT
261 AGCAAGATTTAGTTCTTCTCCAACATGTAGACATTGGAATGGAATTAAACATATATTTAAATATT
26954518 TCAGAAGGACTATTGATATGGAGATTATTTATTCAAATGATTCAAAATCCCTATTAGTTGGCTAT
326 TCAGAAGGACTATTGATATGGAGATTATTTATTCAAATGATTCAAAATCCCTATTAGTTGGCTAT
26954583 GCTGATGTTGGATACTTATCAGATCCACATAAAGGTCAATCTCAAACAGGATATTTATTTACATG
391 GCTGATGTTGGATACTTATCAGATCCACATAAAGGTCAATCTCAAACAGGATATTTATTTACATG
26954648 TGGGGGTACTACCATATCATAGTGTTCGACAAAGCAAACATTAACTGCTACTTCTTCAAATCATG
456 TGGGGGTACTACCATATCATAGTGTTCGACAAAGCAAACATTAACTGCTACTTCTTCAAATCATG
26954713 CAGAAATAATTGCAATGCATGAGGCAAGTCGAGAGTGTGTTTGGCTAAGATTATTGACCCAACAT
521 CAGAAATAATTGCAATGCATGAGGCAAGTCGAGAGTGTGTTTGGCTAAGATTATTGACCCAACAT
26954778 ATCCAGAAGATATGCAATTTGACTTTATAGGAAAAGATGCCAACTATCTTATATGAAGATAATGC
586 ATCCAGAAGATATGCAATTTGACTTTATAGGAAAAGATGCCAACTATCTTATATGAAGATAATGC
26954843 AACATGTATAGCTCAATTGAAGGGTGGTTACATCAAAGGTGATAGAGCGAAACATATTTCGCCAA
651 AACATGTATAGCTCAATTGAAGGGTGGTTACATCAAAGGTGATAGAGCGAAACATATTTCGCCAA
26954908 AATTATTCTTCACCCGTGATCTTGAGAAAAAAGGTGATATAAATGTTCAACAAATTCATTCTAGT
716 AATTATTCTTCACCCGTGATCTTGAGAAAAAAGGTGATATAAATGTTCAACAAATTCATTCTAGT
26954973 GATAATTTAGCATATCTTTTTACTAAGG
781 GATAATTTAGCATATCTTTTTACTAAGG
26955001 TGAGCATTTAAAATATGAAATTCATGTTCATTAATCAACTTATATGGAAAAGATATTATAGAAAT
1 TGAGCATTTAAAATATGAAATTCATGTTCATTAATCAACTTATATGGAAAAGATATTATAGAAAT
26955066 TTTACATGGATAAAGCAACCAATTAAGTACTCTGATGGTTGTATGATCGTTAGATGTGAATAAAG
66 TTTACATGGATAAAGCAACCAATTAAGTACTCTGATGGTTGTATGATCGTTAGATGTGAATAAAG
26955131 ATCAATTTTCTCCTTGTGAGAATGATGAAGAGTTTCTTGGTCCTGAAGTACCATATCTAAGTGCC
131 ATCAATTTTCTCCTTGTGAGAATGATGAAGAGTTTCTTGGTCCTGAAGTACCATATCTAAGTGCC
26955196 ATAGGGGCATTGATGTATCTTGCAAACAACACAAGACCTGACATAGCTTTCACTGTAAACTTGTT
196 ATAGGGGCATTGATGTATCTTGCAAACAACACAAGACCTGACATAGCTTTCACTGTAAACTTGTT
26955261 AGCAAGATTTAGTTCTTCTCCAACATGTAGACATTGGAATGGAATTAAACATATATTTAAATATT
261 AGCAAGATTTAGTTCTTCTCCAACATGTAGACATTGGAATGGAATTAAACATATATTTAAATATT
26955326 TCAGAAGGACTATTGATAT-GAGATTATTTTATTCAAATGATTCAAAATCCCTATTAGTTGGCTA
326 TCAGAAGGACTATTGATATGGAGATTA-TTTATTCAAATGATTCAAAATCCCTATTAGTTGGCTA
26955390 TGCTGATGTTGGATACTTATCAGATCCACATAAAGGTCAATCTCAAACAGGATATTTATTTACAT
390 TGCTGATGTTGGATACTTATCAGATCCACATAAAGGTCAATCTCAAACAGGATATTTATTTACAT
26955455 GTGGGGGTACTACCATATCATAGTGTTCGACAAAGCAAACATTAACTGCTACTTCTTCAAATCAT
455 GTGGGGGTACTACCATATCATAGTGTTCGACAAAGCAAACATTAACTGCTACTTCTTCAAATCAT
26955520 GCAGAAATAATTGCAATGCATGAGGCAAGTCGAGAGTGTGTTTGGCTAAGATTATTGACCCAACA
520 GCAGAAATAATTGCAATGCATGAGGCAAGTCGAGAGTGTGTTTGGCTAAGATTATTGACCCAACA
26955585 TATCCAGAAGATATGCAATTTGACTTTATAGGAAAAGATGCCAACTATCTTATATGAAGATAATG
585 TATCCAGAAGATATGCAATTTGACTTTATAGGAAAAGATGCCAACTATCTTATATGAAGATAATG
26955650 CAACATGTATAGCTCAATTGAAGGGTGGTTACATCAAAGGTGATAGAGCGAAACATATTTCGCCA
650 CAACATGTATAGCTCAATTGAAGGGTGGTTACATCAAAGGTGATAGAGCGAAACATATTTCGCCA
26955715 AAATTATTCTTCACCCGTGATCTTGAGAAAAAAGGTGATATAAATGTTCAACAAATTCATTCTAG
715 AAATTATTCTTCACCCGTGATCTTGAGAAAAAAGGTGATATAAATGTTCAACAAATTCATTCTAG
26955780 TGATAATTTAGCATATCTTTTTACTAAGG
780 TGATAATTTAGCATATCTTTTTACTAAGG
26955809 CATTGCTAAC
Statistics
Matches: 807, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
807 7 0.01
808 800 0.99
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (808 bp):
TGAGCATTTAAAATATGAAATTCATGTTCATTAATCAACTTATATGGAAAAGATATTATAGAAAT
TTTACATGGATAAAGCAACCAATTAAGTACTCTGATGGTTGTATGATCGTTAGATGTGAATAAAG
ATCAATTTTCTCCTTGTGAGAATGATGAAGAGTTTCTTGGTCCTGAAGTACCATATCTAAGTGCC
ATAGGGGCATTGATGTATCTTGCAAACAACACAAGACCTGACATAGCTTTCACTGTAAACTTGTT
AGCAAGATTTAGTTCTTCTCCAACATGTAGACATTGGAATGGAATTAAACATATATTTAAATATT
TCAGAAGGACTATTGATATGGAGATTATTTATTCAAATGATTCAAAATCCCTATTAGTTGGCTAT
GCTGATGTTGGATACTTATCAGATCCACATAAAGGTCAATCTCAAACAGGATATTTATTTACATG
TGGGGGTACTACCATATCATAGTGTTCGACAAAGCAAACATTAACTGCTACTTCTTCAAATCATG
CAGAAATAATTGCAATGCATGAGGCAAGTCGAGAGTGTGTTTGGCTAAGATTATTGACCCAACAT
ATCCAGAAGATATGCAATTTGACTTTATAGGAAAAGATGCCAACTATCTTATATGAAGATAATGC
AACATGTATAGCTCAATTGAAGGGTGGTTACATCAAAGGTGATAGAGCGAAACATATTTCGCCAA
AATTATTCTTCACCCGTGATCTTGAGAAAAAAGGTGATATAAATGTTCAACAAATTCATTCTAGT
GATAATTTAGCATATCTTTTTACTAAGG
Found at i:26958370 original size:16 final size:16
Alignment explanation
Indices: 26958334--26958372 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26958324 GTTTGGTTCG
*
26958334 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAA
*
26958350 TTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
26958366 CTGTAAT
1 CTGTAAT
26958373 AGTAATTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:26958669 original size:55 final size:54
Alignment explanation
Indices: 26958560--26958676 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
26958550 GATTATTAAT
* *
26958560 ATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAATAAGATTTTAACATAATTATTATT-AATATAATTTA
* * *
26958616 ATAAAAATATATAATTTAATAAGATTCTTAATATAATTATTCTT-ATATGAATTTA
1 ATAAAAATAAATAATTTAATAAGATT-TTAACATAATTATTATTAATAT-AATTTA
*
26958671 CTAAAA
1 ATAAAA
26958677 TCATAATATA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
54 4 0.08
55 29 0.55
56 20 0.38
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (54 bp):
ATAAAAATAAATAATTTAATAAGATTTTAACATAATTATTATTAATATAATTTA
Found at i:26960237 original size:49 final size:49
Alignment explanation
Indices: 26960141--26960244 Score: 147
Period size: 49 Copynumber: 2.1 Consensus size: 49
26960131 AGAAAAAAAC
* * *
26960141 AAATTAAAATTAAGTTTAATATCATGAATCAAAATGTGAACATTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAATGTCAACACTTTATA
* *
26960190 AAATTAAAATTAAGTTCAATATCATGAATTAAAA-GCTCAACGCTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAATG-TCAACACTTTATA
26960239 AAATTA
1 AAATTA
26960245 TAACACATGA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
48 1 0.02
49 48 0.98
ACGTcount: A:0.49, C:0.09, G:0.08, T:0.35
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAATGTCAACACTTTATA
Found at i:26963619 original size:45 final size:44
Alignment explanation
Indices: 26963510--26963625 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 44
26963500 TCATGGTGAA
* *
26963510 TAAATAAAAACAGGGAAAGTTTAACATAAGTAGTCATTGATAAC
1 TAAATAAAAACAGGGAAAGTTTAACATAAGTAGTCAGTCATAAC
** * * * *
26963554 TAAAT-TTAACA---TAAGTTTAACATACGTATTTAGTCATTAAC
1 TAAATAAAAACAGGGAAAGTTTAACATAAGTAGTCAGTCA-TAAC
26963595 TAAATAAAAACAGGGAAAGTTTAACATAAGT
1 TAAATAAAAACAGGGAAAGTTTAACATAAGT
26963626 TTAACATAAG
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
40 19 0.35
41 9 0.16
42 4 0.07
43 4 0.07
44 5 0.09
45 14 0.25
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.29
Consensus pattern (44 bp):
TAAATAAAAACAGGGAAAGTTTAACATAAGTAGTCAGTCATAAC
Found at i:26963625 original size:56 final size:49
Alignment explanation
Indices: 26963558--26963674 Score: 144
Period size: 49 Copynumber: 2.2 Consensus size: 49
26963548 GATAACTAAA
*
26963558 TTTAACATAAGTTTAACATACGTATTTAGTCATTAACTAAATAAAAACAGGGAAAG
1 TTTAACATAAGTTTAACATA---A-GTAGTCATTAA-TAAAT--AAACAGGGAAAG
* *
26963614 TTTAACATAAGTTTAACATAAGTAGTCATTGATAACTAAACAGGGAAAG
1 TTTAACATAAGTTTAACATAAGTAGTCATTAATAAATAAACAGGGAAAG
26963663 TTTAACATAAGT
1 TTTAACATAAGT
26963675 AGTCATTCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
49 24 0.41
51 4 0.07
52 9 0.16
53 1 0.02
56 20 0.34
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (49 bp):
TTTAACATAAGTTTAACATAAGTAGTCATTAATAAATAAACAGGGAAAG
Found at i:26963627 original size:11 final size:11
Alignment explanation
Indices: 26963611--26963636 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26963601 AAAACAGGGA
26963611 AAGTTTAACAT
1 AAGTTTAACAT
26963622 AAGTTTAACAT
1 AAGTTTAACAT
26963633 AAGT
1 AAGT
26963637 AGTCATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (11 bp):
AAGTTTAACAT
Found at i:26969285 original size:37 final size:37
Alignment explanation
Indices: 26969235--26969307 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
26969225 GAGAGTTTTC
26969235 TTCTAATTGCAAAACCGTCCAAATTGGGGACCAAGTG
1 TTCTAATTGCAAAACCGTCCAAATTGGGGACCAAGTG
* *
26969272 TTCTAATTGCAAAACTGTCCAACTTGGGGACCAAGT
1 TTCTAATTGCAAAACCGTCCAAATTGGGGACCAAGT
26969308 CAACCCAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (37 bp):
TTCTAATTGCAAAACCGTCCAAATTGGGGACCAAGTG
Found at i:26978599 original size:19 final size:19
Alignment explanation
Indices: 26978577--26978614 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26978567 TCCCTCATCC
26978577 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
26978596 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
26978615 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:26985330 original size:13 final size:14
Alignment explanation
Indices: 26985311--26985348 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
26985301 CAATGGCATA
26985311 GAAATAATATAAAC
1 GAAATAATATAAAC
26985325 -AAATAA-ATAAAC
1 GAAATAATATAAAC
26985337 GAAATTAATATA
1 GAAA-TAATATA
26985349 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:26985730 original size:28 final size:27
Alignment explanation
Indices: 26985698--26985801 Score: 81
Period size: 26 Copynumber: 3.8 Consensus size: 27
26985688 AAAAATATAT
26985698 AAATATATACATGTACATATATATAAAA
1 AAATATATACAT-TACATATATATAAAA
* * * *
26985726 AAATATCTACA-TATATATAGATTATAA
1 AAATATATACATTACATATATA-TAAAA
*
26985753 AAA-AGATA-ATTACATATATATAAAAA
1 AAATATATACATTACATATATAT-AAAA
26985779 CAAATAATAATA-ATTACATATAT
1 -AAAT-AT-ATACATTACATATAT
26985802 CGAAATTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
25 2 0.03
26 22 0.37
27 10 0.17
28 10 0.17
29 1 0.02
30 14 0.24
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.33
Consensus pattern (27 bp):
AAATATATACATTACATATATATAAAA
Found at i:26986014 original size:22 final size:20
Alignment explanation
Indices: 26985973--26986017 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
26985963 GCAAATCAAC
*
26985973 AAAATAAGAACAAGCCAGAG
1 AAAATAAGAACAAGACAGAG
*
26985993 AAAATAAGAACGCAAGAGAGAG
1 AAAATAAGAA--CAAGACAGAG
26986015 AAA
1 AAA
26986018 TTTGAGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
22 11 0.52
ACGTcount: A:0.62, C:0.11, G:0.22, T:0.04
Consensus pattern (20 bp):
AAAATAAGAACAAGACAGAG
Found at i:26986232 original size:21 final size:19
Alignment explanation
Indices: 26986196--26986264 Score: 102
Period size: 19 Copynumber: 3.5 Consensus size: 19
26986186 AATCATATCT
26986196 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
*
26986215 TCTAAGATTGCATATATCTTA
1 TCTAAGATTG--TATATCATA
*
26986236 TCTAGGATTGTATATCATA
1 TCTAAGATTGTATATCATA
26986255 TCTAAGATTG
1 TCTAAGATTG
26986265 CACATCCTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
19 27 0.61
21 17 0.39
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (19 bp):
TCTAAGATTGTATATCATA
Found at i:26986755 original size:44 final size:44
Alignment explanation
Indices: 26986707--26986822 Score: 153
Period size: 44 Copynumber: 2.6 Consensus size: 44
26986697 TTCTAATCCA
* * * *
26986707 CTCCACTACAACTTTAGGGAGATAGGA-TTTGTTCATTCAGTCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTTCTT-ACTCAGTCTG
* *
26986751 CTCCACTGCAATTTTAGGGGGATAAGACTTTCTTACTCAGTCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTTCTTACTCAGTCTG
*
26986795 CTCCACTGTAACTTTAGGGAGATAAGAC
1 CTCCACTGCAACTTTAGGGAGATAAGAC
26986823 CCGATGTGAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 57 0.92
45 5 0.08
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (44 bp):
CTCCACTGCAACTTTAGGGAGATAAGACTTTCTTACTCAGTCTG
Found at i:26987265 original size:88 final size:88
Alignment explanation
Indices: 26987080--26987394 Score: 267
Period size: 88 Copynumber: 3.6 Consensus size: 88
26987070 AGACTAATGT
* * * * *
26987080 CTTCGATCTGCTTCACTGCTAGTACAGGAAGGCAAGATCTACTAT-TTCTAACCTACTCCACTGC
1 CTTCAATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCCTC-AACCTACTCCACTGC
** * * * * *
26987144 TGTTCAGGG-GGACAAGGCCGGAGT
65 AATCCAGGGAGG-CAAGACTGGCGC
* * * * ** *
26987168 TTTCGATCTGCTTCGCTGCCTGTATAGGAAGGCAAGATCTGCTATCCTCAGTCTGCTCCACTGCA
1 CTTCAATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCCTCAACCTACTCCACTGCA
26987233 A-CCTAGGGAGGCAAGACTGGCGC
66 ATCC-AGGGAGGCAAGACTGGCGC
* * * ** * *
26987256 CTTCAATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTACTATTTTCAACCTACTCCGCTGTA
1 CTTCAATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCCTCAACCTACTCCACTGCA
* * *
26987321 ATCCAGGGAGGCAAGGCTGGTGT
66 ATCCAGGGAGGCAAGACTGGCGC
** * * * *
26987344 CTTTGATCTGCTTCGCTACCGGTACAGGAAGGCAAGATATGCTATCTTCAA
1 CTTCAATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCCTCAA
26987395 TGATCTGTTC
Statistics
Matches: 180, Mismatches: 43, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
87 1 0.01
88 173 0.96
89 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (88 bp):
CTTCAATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCCTCAACCTACTCCACTGCA
ATCCAGGGAGGCAAGACTGGCGC
Found at i:26988731 original size:14 final size:15
Alignment explanation
Indices: 26988708--26988740 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
26988698 ATCAATACTT
*
26988708 TTCCAGATAAGG-CC
1 TTCCACATAAGGTCC
26988722 TTCCACATAAGGTCC
1 TTCCACATAAGGTCC
26988737 TTCC
1 TTCC
26988741 CAGCTTAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGGTCC
Found at i:26993649 original size:3 final size:3
Alignment explanation
Indices: 26993641--26993676 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
26993631 ATATATATAG
26993641 TAA TAA TAA TAA TAA TAA TAA TAA CT-A TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
26993677 CTTAATAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 1 0.03
3 29 0.94
4 1 0.03
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26993658 original size:12 final size:13
Alignment explanation
Indices: 26993641--26993684 Score: 65
Period size: 12 Copynumber: 3.5 Consensus size: 13
26993631 ATATATATAG
26993641 TAATAATAATAA-
1 TAATAATAATAAC
26993653 TAATAATAATAAC
1 TAATAATAATAAC
26993666 T-ATAATAATAAC
1 TAATAATAATAAC
26993678 TTAATAA
1 -TAATAA
26993685 CAAGAAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 23 0.79
13 2 0.07
14 4 0.14
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (13 bp):
TAATAATAATAAC
Found at i:26994037 original size:19 final size:19
Alignment explanation
Indices: 26994013--26994062 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
26994003 AATCATATCT
*
26994013 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
26994032 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
26994051 TCTAAGATTGCA
1 TCTAAGATTGCA
26994063 CATCTTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:27006975 original size:33 final size:32
Alignment explanation
Indices: 27006920--27006992 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 32
27006910 GCCCACACGA
* *
27006920 CCCAAAATGGCTTGCCTGTGTGGGTC-ACATGG
1 CCCAAAATAGCTTGCCTATGT-GGTCTACATGG
27006952 CCCAAAATAGCATTGCCTATGTGGTCTACATGG
1 CCCAAAATAGC-TTGCCTATGTGGTCTACATGG
27006985 CCCAAAAT
1 CCCAAAAT
27006993 GGCCTAAACC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
32 14 0.38
33 23 0.62
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (32 bp):
CCCAAAATAGCTTGCCTATGTGGTCTACATGG
Found at i:27014193 original size:27 final size:27
Alignment explanation
Indices: 27014155--27014208 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
27014145 TTATGCAAAC
27014155 ATAGGAATGGGTCGAACCCGGATCAAT
1 ATAGGAATGGGTCGAACCCGGATCAAT
27014182 ATAGGAATGGGTCGAACCCGGATCAAT
1 ATAGGAATGGGTCGAACCCGGATCAAT
27014209 CAAAGTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.19
Consensus pattern (27 bp):
ATAGGAATGGGTCGAACCCGGATCAAT
Found at i:27016483 original size:20 final size:20
Alignment explanation
Indices: 27016448--27016496 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
27016438 ATCAAGGTCT
*
27016448 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
27016467 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
27016487 TTGCTTACTT
1 TTGCTTACTT
27016497 AATTAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:27016825 original size:50 final size:48
Alignment explanation
Indices: 27016698--27016826 Score: 127
Period size: 49 Copynumber: 2.6 Consensus size: 48
27016688 GATAATAACA
* * *
27016698 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTTCGTGTAC
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATAGGATGTTTCG-ATAC
* * *
27016747 TGCCAATGCCATATCCCAGATATGGTCTTACATAGGA-GTTCTC-ATACC
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATAGGATGTT-TCGATA-C
* *
27016795 GGTGCCCATGCCATGTCCTAGACATTGTCTTA
1 --TGCCAATGCCATGTCCTAGACATGGTCTTA
27016827 TGGGGGACCT
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
47 2 0.03
48 4 0.06
49 34 0.52
50 25 0.38
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (48 bp):
TGCCAATGCCATGTCCTAGACATGGTCTTACATAGGATGTTTCGATAC
Found at i:27016840 original size:50 final size:50
Alignment explanation
Indices: 27016746--27016888 Score: 144
Period size: 50 Copynumber: 2.9 Consensus size: 50
27016736 GTTTCGTGTA
* * *** ** *
27016746 CTGCCAATGCCATATCCCAGATATGGTCTTACATAGGAGTTCTCATAC-CG
1 CTGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCAT-CTCC
* * * * *
27016796 GTGCCCATGCCATGTCCTAGACATTGTCTTATGGGGGACCTCTCATCTCC
1 CTGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCC
*
27016846 CTGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCT
1 CTGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCT
27016889 TGTAACAGCC
Statistics
Matches: 73, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
49 1 0.01
50 72 0.99
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (50 bp):
CTGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCC
Found at i:27022208 original size:59 final size:59
Alignment explanation
Indices: 27022116--27022233 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
27022106 ACGTACAAGA
27022116 GATTATTTTTAATTTCATAAGTATGTATGTGCATTAATGCATTTGCTTATTAAATTTTT
1 GATTATTTTTAATTTCATAAGTATGTATGTGCATTAATGCATTTGCTTATTAAATTTTT
27022175 GATTATTTTTAATTTCATAAGTATGTATGTGCATTAATGCATTTGCTTATTAAATTTTT
1 GATTATTTTTAATTTCATAAGTATGTATGTGCATTAATGCATTTGCTTATTAAATTTTT
27022234 TTAATCAATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.53
Consensus pattern (59 bp):
GATTATTTTTAATTTCATAAGTATGTATGTGCATTAATGCATTTGCTTATTAAATTTTT
Found at i:27028760 original size:29 final size:29
Alignment explanation
Indices: 27028692--27028753 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
27028682 ATCAACTTTG
**
27028692 CATAGAATTAGGTTTTGTTTAAAATTGAT
1 CATAGAATTAGAATTTGTTTAAAATTGAT
27028721 CATAGAATTAGAATTTGTTTAAAATTGAT
1 CATAGAATTAGAATTTGTTTAAAATTGAT
27028750 CATA
1 CATA
27028754 TTATTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.42
Consensus pattern (29 bp):
CATAGAATTAGAATTTGTTTAAAATTGAT
Found at i:27030959 original size:30 final size:31
Alignment explanation
Indices: 27030935--27030993 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
27030925 GTAAATACTC
** *
27030935 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGACAGATCAATAGTGTAAATATGA
27030965 AAAATTTGACAGATCAATAGTGTAAATAT
1 AAAATTTGACAGATCAATAGTGTAAATAT
27030994 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (31 bp):
AAAATTTGACAGATCAATAGTGTAAATATGA
Found at i:27033960 original size:50 final size:50
Alignment explanation
Indices: 27033845--27034336 Score: 493
Period size: 50 Copynumber: 9.6 Consensus size: 50
27033835 TGTGAGCTAG
* * *
27033845 TGTAAGACCATGTCTGAGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAGA-TA--AGAGGTCCCA
*
27033901 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCTCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
* ** * * *
27033951 TGTAAGACCATGTCTGGGACATGGCATTAACATCATTGAGATTATGAGAAGTCCTA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAGA-TA--AGAGGTCCCA
* * * *
27034007 TGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGGTGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
*
27034057 TGTAAGACCATGTCTGGGACATGACGTTGGCACCGAGATGAA-AGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT-AAGAGGTCCCA
* * *
27034107 TGTAAGACCATG-CATGGGACATGGAGTTGGCACCAAGATGAGAGGTCCCA
1 TGTAAGACCATGTC-TGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
* ** *
27034157 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGACGAGAGGTCCTA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
* * * *
27034207 TGTAAGACCATGTCTGGGACATGGTGTTGGCACTGAGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
* * * * * * **
27034257 CGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
* * * * *
27034307 TTTAAGACCATATCTAGGATATGGCATTGG
1 TGTAAGACCATGTCTGGGACATGGCGTTGG
27034337 TAGTACAAAA
Statistics
Matches: 374, Mismatches: 52, Indels: 26
0.83 0.12 0.06
Matches are distributed among these distances:
49 2 0.01
50 285 0.76
51 3 0.01
52 3 0.01
53 11 0.03
54 2 0.01
55 2 0.01
56 66 0.18
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
Found at i:27033985 original size:106 final size:100
Alignment explanation
Indices: 27033845--27034336 Score: 554
Period size: 100 Copynumber: 4.8 Consensus size: 100
27033835 TGTGAGCTAG
*
27033845 TGTAAGACCATGTCTGAGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATGTAAGACC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGAG---ATGAGAGGTCCCATGTAAGACC
* *
27033910 ATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCTCA
60 ATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
** * *
27033951 TGTAAGACCATGTCTGGGACATGGCATTAACATCATTGAGATTATGAGAAGTCCTATGTAAGACC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGAG---ATGAGAGGTCCCATGTAAGACC
* * *
27034016 ATGTCTAGGACATGGCATTGGCACCGAGGTGAGAGGTCCCA
60 ATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * * *
27034057 TGTAAGACCATGTCTGGGACATGACGTTGGCACCGAGATGAAAGGTCCCATGTAAGACCATG-CA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTC-
* *
27034121 TGGGACATGGAGTTGGCACCAAGATGAGAGGTCCCA
65 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
27034157 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGACGAGAGGTCCTATGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTCT
* * *
27034222 GGGACATGGTGTTGGCACTGAGATGAGAGGTCCCC
66 GGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * * * * ** * *
27034257 CGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATTTAAGACCATATCT
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTCT
* * *
27034322 AGGATATGGCATTGG
66 GGGACATGGCGTTGG
27034337 TAGTACAAAA
Statistics
Matches: 336, Mismatches: 48, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
99 1 0.00
100 206 0.61
101 1 0.00
103 3 0.01
105 1 0.00
106 124 0.37
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (100 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTCT
GGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
Found at i:27034236 original size:150 final size:150
Alignment explanation
Indices: 27033845--27034336 Score: 578
Period size: 150 Copynumber: 3.2 Consensus size: 150
27033835 TGTGAGCTAG
27033845 TGTAAGACCATGTCT-GAGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATGTAAGAC
1 TGTAAGACCATGTCTAG-GACATGGCATTGGCA-C--TGAG---ATGAGAGGTCCCATGTAAGAC
*
27033909 CATGTCTGGGACATGGCGTTGGCACCGAGAT-AAGAGGTCTCATGTAAGACCATGTCTGGGACAT
59 CATGTCTGGGACATGGCGTTGGCACCGAGATGAA-AGGTCCCATGTAAGACCATGTCTGGGACAT
** * *
27033973 GGCATTAACATCATTGAGATTATGAGAAGTCCTA
123 GGCATTGGCACCA---AG---ATGAGAAGTCCCA
* *
27034007 TGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGGTGAGAGGTCCCATGTAAGACCATGTCT
1 TGTAAGACCATGTCTAGGACATGGCATTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTCT
*
27034072 GGGACATGACGTTGGCACCGAGATGAAAGGTCCCATGTAAGACCATG-CATGGGACATGG-AGTT
66 GGGACATGGCGTTGGCACCGAGATGAAAGGTCCCATGTAAGACCATGTC-TGGGACATGGCA-TT
*
27034135 GGCACCAAGATGAGAGGTCCCA
129 GGCACCAAGATGAGAAGTCCCA
* * * *
27034157 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGACGAGAGGTCCTATGTAAGACCATGTCT
1 TGTAAGACCATGTCTAGGACATGGCATTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTCT
* * * ** * *
27034222 GGGACATGGTGTTGGCACTGAGATGAGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGG
66 GGGACATGGCGTTGGCACCGAGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
* * *
27034287 CACCGATATGAGAACTCCCA
131 CACCAAGATGAGAAGTCCCA
* * *
27034307 TTTAAGACCATATCTAGGATATGGCATTGG
1 TGTAAGACCATGTCTAGGACATGGCATTGG
27034337 TAGTACAAAA
Statistics
Matches: 292, Mismatches: 32, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
150 164 0.56
151 2 0.01
153 2 0.01
155 2 0.01
156 85 0.29
157 2 0.01
159 3 0.01
161 1 0.00
162 30 0.10
163 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (150 bp):
TGTAAGACCATGTCTAGGACATGGCATTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTCT
GGGACATGGCGTTGGCACCGAGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
CACCAAGATGAGAAGTCCCA
Found at i:27045294 original size:27 final size:27
Alignment explanation
Indices: 27045256--27045344 Score: 151
Period size: 27 Copynumber: 3.3 Consensus size: 27
27045246 AGCGTGCTCA
27045256 AAATACCCTCGAAGGGTAAAATTACCG
1 AAATACCCTCGAAGGGTAAAATTACCG
*
27045283 AAATACCCTCGAAGGGTAAAATTATCG
1 AAATACCCTCGAAGGGTAAAATTACCG
* *
27045310 AAATACCCTCGAAGGGTAAAATAACCA
1 AAATACCCTCGAAGGGTAAAATTACCG
27045337 AAATACCC
1 AAATACCC
27045345 ATGAAGAGGA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATTACCG
Found at i:27045657 original size:26 final size:26
Alignment explanation
Indices: 27045609--27045704 Score: 120
Period size: 26 Copynumber: 3.7 Consensus size: 26
27045599 GTGATACTGA
* * * * *
27045609 TATTAGCAGCTCTGTTGCGTTACTGT
1 TATTGGCAGCTTTGCTGCTTTACTAT
* *
27045635 TACTGACAGCTTTGCTGCTTTACTAT
1 TATTGGCAGCTTTGCTGCTTTACTAT
*
27045661 TATTGGCAGCTTTGCTACTTTACTAT
1 TATTGGCAGCTTTGCTGCTTTACTAT
27045687 TATTGGCAGCTTTGCTGC
1 TATTGGCAGCTTTGCTGC
27045705 GATATTGATG
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.43
Consensus pattern (26 bp):
TATTGGCAGCTTTGCTGCTTTACTAT
Found at i:27045862 original size:28 final size:28
Alignment explanation
Indices: 27045830--27045886 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
27045820 GATTATTGTT
*
27045830 TTGGGCTAAGGCCGACACTGTTACTGTA
1 TTGGGCTAAGGCCGACACTGTCACTGTA
* *
27045858 TTGGGCTCAGGCCGAGACTGTCACTGTA
1 TTGGGCTAAGGCCGACACTGTCACTGTA
27045886 T
1 T
27045887 GTTGTATGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (28 bp):
TTGGGCTAAGGCCGACACTGTCACTGTA
Found at i:27050676 original size:11 final size:11
Alignment explanation
Indices: 27050662--27050689 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
27050652 TATCCAAGAA
27050662 TTATGAGAAAT
1 TTATGAGAAAT
27050673 TTATGAGAAAT
1 TTATGAGAAAT
27050684 TTATGA
1 TTATGA
27050690 AGGAGCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.18, T:0.39
Consensus pattern (11 bp):
TTATGAGAAAT
Found at i:27052272 original size:36 final size:36
Alignment explanation
Indices: 27052225--27052295 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
27052215 AGTTTGGGGG
27052225 TGTGATAATACTAGAAAGAACATATGTTTTATCCCA
1 TGTGATAATACTAGAAAGAACATATGTTTTATCCCA
*
27052261 TGTGATAATACTAGAAAGAACATATGTTTTCTCCC
1 TGTGATAATACTAGAAAGAACATATGTTTTATCCC
27052296 TACTTATTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (36 bp):
TGTGATAATACTAGAAAGAACATATGTTTTATCCCA
Found at i:27053727 original size:5 final size:5
Alignment explanation
Indices: 27053719--27053760 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
27053709 TTTTTGTTGC
* *
27053719 TAAAA T-AAA TAAAA CAAAA CAAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA -TAAAA TAAAA TAAAA TAAAA TA
27053761 GAACTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
4 4 0.12
5 24 0.75
6 4 0.12
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (5 bp):
TAAAA
Found at i:27053746 original size:16 final size:16
Alignment explanation
Indices: 27053725--27053758 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27053715 TTGCTAAAAT
27053725 AAATAAAACAAAACAA
1 AAATAAAACAAAACAA
* *
27053741 AAATAAAATAAAATAA
1 AAATAAAACAAAACAA
27053757 AA
1 AA
27053759 TAGAACTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (16 bp):
AAATAAAACAAAACAA
Found at i:27056600 original size:26 final size:27
Alignment explanation
Indices: 27056570--27056620 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
27056560 AATTTTTGGG
* *
27056570 TTATAAACTTATATATA-TACAAAAAT
1 TTATAAACATATATAGATTACAAAAAT
27056596 TTATAAACATATATAGATTACAAAA
1 TTATAAACATATATAGATTACAAAA
27056621 TAGGTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (27 bp):
TTATAAACATATATAGATTACAAAAAT
Found at i:27059361 original size:44 final size:44
Alignment explanation
Indices: 27059263--27059419 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 44
27059253 TTTTTGGGTT
* *
27059263 TGCTCCACTGCAACTTCAGGGAGATAAGA-C-CT-GATATGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATCTCTGGATTTAATC
* * * * *
27059304 TGCT-CTCTGCAACTTCAGAGAGATAAAATCTGTGGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATCTCTGGATTTAATC
* * *
27059347 TGCTCCACTGCAACTTCAGGGAGATAGGAT-TATTGGCTTTAAT-
1 TGCTCCACTGCAACTTCAGGGAGATAAGATCT-CTGGATTTAATC
*
27059390 TGCTCCACTGCAACTTCAGGGAAATAAGAT
1 TGCTCCACTGCAACTTCAGGGAGATAAGAT
27059420 TTTCCATCTT
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
40 21 0.22
41 5 0.05
42 1 0.01
43 39 0.41
44 30 0.31
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATCTCTGGATTTAATC
Found at i:27068425 original size:19 final size:20
Alignment explanation
Indices: 27068394--27068431 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
27068384 TTTAAGAAAA
27068394 CTTTACTATAAAGCAAATTT
1 CTTTACTATAAAGCAAATTT
*
27068414 CTTTAC-ATAAAGTAAATT
1 CTTTACTATAAAGCAAATT
27068432 ACAAATAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.42, C:0.13, G:0.05, T:0.39
Consensus pattern (20 bp):
CTTTACTATAAAGCAAATTT
Found at i:27072163 original size:26 final size:27
Alignment explanation
Indices: 27072133--27072183 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
27072123 AATTTTTGGG
* *
27072133 TTATAAACTTATATATA-TACAAAAAT
1 TTATAAACATATATAGATTACAAAAAT
27072159 TTATAAACATATATAGATTACAAAA
1 TTATAAACATATATAGATTACAAAA
27072184 TAGGTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (27 bp):
TTATAAACATATATAGATTACAAAAAT
Found at i:27080001 original size:58 final size:58
Alignment explanation
Indices: 27079906--27080023 Score: 209
Period size: 58 Copynumber: 2.0 Consensus size: 58
27079896 CTAGAATTTC
* *
27079906 AAGAGAAAGACTAAAAACACCATCAATTTTACCATCTCTCTAATTTGTGGGTTTTCCA
1 AAGAGAAACACTAAAAACACCATCAATTTTACAATCTCTCTAATTTGTGGGTTTTCCA
*
27079964 AAGAGAAACACTAAAAACATCATCAATTTTACAATCTCTCTAATTTGTGGGTTTTCCA
1 AAGAGAAACACTAAAAACACCATCAATTTTACAATCTCTCTAATTTGTGGGTTTTCCA
27080022 AA
1 AA
27080024 TTTTCTACCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (58 bp):
AAGAGAAACACTAAAAACACCATCAATTTTACAATCTCTCTAATTTGTGGGTTTTCCA
Found at i:27095101 original size:20 final size:20
Alignment explanation
Indices: 27095078--27095262 Score: 81
Period size: 20 Copynumber: 9.2 Consensus size: 20
27095068 TAAGTGCATT
*
27095078 CAGGTGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * *
27095098 CAGGGGCA-CGTATGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
*
27095118 CAGGAGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * * * *
27095138 TAGGCG-AACGTATGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
*
27095158 CAGGGGTACCGAAGTATAAA
1 CAGGGGTACCGAAGTACAAA
** * *
27095178 -AAAGG-ACACGTATGTACAAT
1 CAGGGGTAC-CG-AAGTACAAA
27095198 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* ** * * *
27095218 CAGGGGCACATATGTGCAAC
1 CAGGGGTACCGAAGTACAAA
* *
27095238 CAGGGGTACCGAAATATAAA
1 CAGGGGTACCGAAGTACAAA
27095258 CAGGG
1 CAGGG
27095263 CACGTATGTG
Statistics
Matches: 111, Mismatches: 46, Indels: 16
0.64 0.27 0.09
Matches are distributed among these distances:
18 2 0.02
19 10 0.09
20 87 0.78
21 10 0.09
22 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.16
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:27095103 original size:40 final size:40
Alignment explanation
Indices: 27095059--27095278 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
27095049 GGGTATAAAT
* * * *
27095059 AGGGGCACATAAGTGCATTCAGGTGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAAC
* *
27095099 AGGGGCACGTATGTGCAATCAGGAGTACCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAAC
* * * *
27095139 AGGCGAACGTATGTGCAATCAGGGGTACCGAAGTATAAAA
1 AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAAC
* * *
27095179 AAGGACACGTATGTACAATCAGGGGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAAC
* * * *
27095219 AGGGGCACATATGTGCAACCAGGGGTACCGAAATATAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAAC
27095259 A-GGGCACGTATGTGCAATCA
1 AGGGGCACGTATGTGCAATCA
27095279 CCAATAATTA
Statistics
Matches: 154, Mismatches: 26, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 17 0.11
40 137 0.89
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (40 bp):
AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAAC
Found at i:27103225 original size:62 final size:62
Alignment explanation
Indices: 27103143--27103262 Score: 231
Period size: 62 Copynumber: 1.9 Consensus size: 62
27103133 GTTATAACTC
*
27103143 AATCAAATTTAAAATGTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAATGTT
1 AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAATGTT
27103205 AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAA
1 AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAA
27103263 CCTTAACTAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (62 bp):
AATCAAATTTAAAATCTTGCCATTGTCTAATACAAAGTTAATCATTTTTACAATCCAATGTT
Found at i:27105823 original size:59 final size:59
Alignment explanation
Indices: 27105741--27105944 Score: 354
Period size: 59 Copynumber: 3.4 Consensus size: 59
27105731 CACAGTCAGT
*
27105741 AATATATTTGTACAAAAATATTCAAAAGAGCTTCTATTTTATTAAATGAAACAATATAAA
1 AATA-ATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
* * *
27105801 AATAACTTGTACAAAAAAATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATTAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
27105860 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
*
27105919 AACAATTTGTACAAAAATATTCAAAA
1 AATAATTTGTACAAAAATATTCAAAA
27105945 ATAAATCAAT
Statistics
Matches: 136, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
59 132 0.97
60 4 0.03
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.33
Consensus pattern (59 bp):
AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
Found at i:27107928 original size:12 final size:12
Alignment explanation
Indices: 27107886--27107910 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27107876 ATTAAATTAT
27107886 AAAAATGAAATA
1 AAAAATGAAATA
27107898 AAAAATGAAATA
1 AAAAATGAAATA
27107910 A
1 A
27107911 TATTAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAATGAAATA
Found at i:27128955 original size:44 final size:42
Alignment explanation
Indices: 27128891--27129084 Score: 205
Period size: 41 Copynumber: 4.6 Consensus size: 42
27128881 TAACCGTTAC
* **
27128891 ACGGTGGAATCAGTACTTAGCAACCACCTCATGTTCAAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTCATAATC-AAGGAT
* * *
27128934 CCCGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
1 -ACGGTGGAATCAGCACTTAGCAACCACCTCATAATCAAGGAT
* *
27128977 ACGG-GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACC--TCATAATCAAGGAT
* * * *
27129019 ACAGTGGAATCAACACTTAGCAACCACCTTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTCATAATCAAGGAT
* *
27129061 ACGG-GGAATCAGCACATAACAACC
1 ACGGTGGAATCAGCACTTAGCAACC
27129085 CCTTTCATTT
Statistics
Matches: 125, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
40 2 0.02
41 36 0.29
42 31 0.25
43 23 0.18
44 33 0.26
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (42 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTCATAATCAAGGAT
Found at i:27129044 original size:84 final size:84
Alignment explanation
Indices: 27128938--27129091 Score: 290
Period size: 84 Copynumber: 1.8 Consensus size: 84
27128928 AAGGATCCCG
* *
27128938 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
1 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAACAACCCC
27129003 TTTCACAATCAAGGATACA
66 TTTCACAATCAAGGATACA
27129022 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAACAACCCC
1 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAACAACCCC
27129087 TTTCA
66 TTTCA
27129092 TTTAAAGAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 68 1.00
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.21
Consensus pattern (84 bp):
GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAACAACCCC
TTTCACAATCAAGGATACA
Found at i:27131759 original size:30 final size:31
Alignment explanation
Indices: 27131725--27131784 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
27131715 AAACCTTTTA
*
27131725 TTTTTCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
* *
27131755 TTTTTCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCA
27131785 TCCCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:27132275 original size:5 final size:5
Alignment explanation
Indices: 27132265--27132290 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
27132255 CTCGAAAATT
27132265 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
27132291 CGAATGCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:27142902 original size:14 final size:16
Alignment explanation
Indices: 27142871--27142902 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27142861 TTTTAGTGTG
27142871 TTTAATATATTATATT
1 TTTAATATATTATATT
27142887 TTTAATAT-TTAT-TT
1 TTTAATATATTATATT
27142901 TT
1 TT
27142903 ATACAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 4 0.25
16 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTAATATATTATATT
Found at i:27143252 original size:41 final size:41
Alignment explanation
Indices: 27143202--27143294 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 41
27143192 ATAGTTTTCA
* * * * * *
27143202 TTTAATATTTTTATGGTTTACTTGATTATTAGTTATATTTG
1 TTTATTATTTTAATGGGTTACTTAATGATTACTTATATTTG
*
27143243 -TTAGTTATTTTAATGGGTTATTTAATGATTACTTATATTTG
1 TTTA-TTATTTTAATGGGTTACTTAATGATTACTTATATTTG
27143284 TTTATTATTTT
1 TTTATTATTTT
27143295 GGTTTGGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 3 0.07
41 37 0.86
42 3 0.07
ACGTcount: A:0.25, C:0.02, G:0.12, T:0.61
Consensus pattern (41 bp):
TTTATTATTTTAATGGGTTACTTAATGATTACTTATATTTG
Found at i:27146660 original size:15 final size:16
Alignment explanation
Indices: 27146629--27146666 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
27146619 TAAATTATGA
27146629 ATATGTGTGTAATGTG
1 ATATGTGTGTAATGTG
*
27146645 ATATGTGT-TTATGTG
1 ATATGTGTGTAATGTG
*
27146660 ACATGTG
1 ATATGTG
27146667 ACCATTATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.24, C:0.03, G:0.29, T:0.45
Consensus pattern (16 bp):
ATATGTGTGTAATGTG
Found at i:27151329 original size:12 final size:12
Alignment explanation
Indices: 27151312--27151344 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
27151302 AGACAAATTT
27151312 TCTTTTCTTTTA
1 TCTTTTCTTTTA
27151324 TCTTTTC-TTTA
1 TCTTTTCTTTTA
27151335 -CTTTTCTTTT
1 TCTTTTCTTTT
27151345 TATTTTTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 6 0.30
11 7 0.35
12 7 0.35
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTTCTTTTA
Found at i:27151374 original size:29 final size:28
Alignment explanation
Indices: 27151342--27151402 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
27151332 TTACTTTTCT
* *
27151342 TTTTATTTTTAGAATATGGTTTTCTTTTA
1 TTTTATTTTTAGAATA-GATTTTATTTTA
*
27151371 TTTTCTTTTTAGAATAGATTTTATTTTA
1 TTTTATTTTTAGAATAGATTTTATTTTA
27151399 TTTT
1 TTTT
27151403 CCTTCTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 14 0.48
29 15 0.52
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.67
Consensus pattern (28 bp):
TTTTATTTTTAGAATAGATTTTATTTTA
Found at i:27151397 original size:28 final size:29
Alignment explanation
Indices: 27151342--27151403 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
27151332 TTACTTTTCT
* * *
27151342 TTTTATTTTTAGAATATGGTTTTCTTTTA
1 TTTTCTTTTTAGAATATGATTTTATTTTA
27151371 TTTTCTTTTTAGAATA-GATTTTATTTTA
1 TTTTCTTTTTAGAATATGATTTTATTTTA
27151399 TTTTC
1 TTTTC
27151404 CTTCTTATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.66
Consensus pattern (29 bp):
TTTTCTTTTTAGAATATGATTTTATTTTA
Done.