Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 74 of 135
Found at i:29019133 original size:6 final size:6
Alignment explanation
Indices: 29019122--29019149 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
29019112 GTACGTGTAT
29019122 ATATAC ATATAC ATATAC ATATAC ATAT
1 ATATAC ATATAC ATATAC ATATAC ATAT
29019150 GTACACGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (6 bp):
ATATAC
Found at i:29029881 original size:23 final size:23
Alignment explanation
Indices: 29029855--29029922 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
29029845 TGAGGGAAAA
29029855 ATGCAAATTGTTTATGAAAAAGG
1 ATGCAAATTGTTTATGAAAAAGG
* *
29029878 ATGCATAA-TG----GGGAAAA--
1 ATGCA-AATTGTTTATGAAAAAGG
29029895 ATGCAAATTGTTTATGAAAAAGG
1 ATGCAAATTGTTTATGAAAAAGG
29029918 ATGCA
1 ATGCA
29029923 TAATGCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 16
0.62 0.08 0.30
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
19 5 0.15
21 5 0.15
23 12 0.36
24 2 0.06
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (23 bp):
ATGCAAATTGTTTATGAAAAAGG
Found at i:29029903 original size:40 final size:40
Alignment explanation
Indices: 29029848--29029927 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
29029838 CTAGTTTTGA
29029848 GGGAAAAATGCAAATTGTTTATGAAAAAGGATGCATAATG
1 GGGAAAAATGCAAATTGTTTATGAAAAAGGATGCATAATG
29029888 GGGAAAAATGCAAATTGTTTATGAAAAAGGATGCATAATG
1 GGGAAAAATGCAAATTGTTTATGAAAAAGGATGCATAATG
29029928 CAAAAGGTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (40 bp):
GGGAAAAATGCAAATTGTTTATGAAAAAGGATGCATAATG
Found at i:29041670 original size:7 final size:7
Alignment explanation
Indices: 29041654--29041705 Score: 77
Period size: 7 Copynumber: 7.4 Consensus size: 7
29041644 TCACCCCATT
*
29041654 TTTTCCC
1 TTTTCTC
29041661 TTTTCTC
1 TTTTCTC
*
29041668 TTTTCCC
1 TTTTCTC
*
29041675 TTTTCCC
1 TTTTCTC
29041682 TTTTCTC
1 TTTTCTC
29041689 TTTTCTC
1 TTTTCTC
29041696 TTTTCTC
1 TTTTCTC
29041703 TTT
1 TTT
29041706 GATGCTTTGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTTCTC
Found at i:29041680 original size:21 final size:21
Alignment explanation
Indices: 29041654--29041705 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
29041644 TCACCCCATT
29041654 TTTTCCCTTTTCTCTTTTCCC
1 TTTTCCCTTTTCTCTTTTCCC
*
29041675 TTTTCCCTTTTCTCTTTTCTC
1 TTTTCCCTTTTCTCTTTTCCC
*
29041696 TTTTCTCTTT
1 TTTTCCCTTT
29041706 GATGCTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTCCCTTTTCTCTTTTCCC
Found at i:29050770 original size:20 final size:22
Alignment explanation
Indices: 29050727--29050770 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
29050717 CTTTTATGAT
*
29050727 TTTTTATATAATTTTTTTACAA
1 TTTTTATATAATTTTTTAACAA
*
29050749 TTTTTAT-T-ATTTTTTAAGAA
1 TTTTTATATAATTTTTTAACAA
29050769 TT
1 TT
29050771 CTAATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 1 0.05
22 7 0.35
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTTTATATAATTTTTTAACAA
Found at i:29053074 original size:29 final size:30
Alignment explanation
Indices: 29053041--29053101 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 30
29053031 ACTTATTTTA
29053041 TTGTTAATTTTGTTATTATTTTA-AGACAT
1 TTGTTAATTTTGTTATTATTTTAGAGACAT
29053070 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAGAGACAT
29053100 TT
1 TT
29053102 ATTTGTTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 23 0.74
30 8 0.26
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAGACAT
Found at i:29053246 original size:12 final size:12
Alignment explanation
Indices: 29053216--29053248 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
29053206 TATATATTTT
29053216 AAAATT-ATATA
1 AAAATTAATATA
29053227 AAAA-TAATATA
1 AAAATTAATATA
29053238 AAAATTAATAT
1 AAAATTAATAT
29053249 GGACAGACCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:29054349 original size:23 final size:23
Alignment explanation
Indices: 29054323--29054366 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
29054313 CCAAATAATA
*
29054323 TTAAAAACAACAGTGAAACAACC
1 TTAAAAACAACAGCGAAACAACC
*
29054346 TTAAAAACGACAGCGAAACAA
1 TTAAAAACAACAGCGAAACAA
29054367 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.20, G:0.11, T:0.11
Consensus pattern (23 bp):
TTAAAAACAACAGCGAAACAACC
Found at i:29054373 original size:23 final size:23
Alignment explanation
Indices: 29054319--29054375 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
29054309 ATATCCAAAT
*
29054319 AATATTAAAAACAACAGTGAAAC
1 AATATTAAAAACAACAGCGAAAC
** *
29054342 AACCTTAAAAACGACAGCGAAAC
1 AATATTAAAAACAACAGCGAAAC
*
29054365 AATAATAAAAA
1 AATATTAAAAA
29054376 TGCATAGAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.61, C:0.16, G:0.09, T:0.14
Consensus pattern (23 bp):
AATATTAAAAACAACAGCGAAAC
Found at i:29054722 original size:18 final size:19
Alignment explanation
Indices: 29054699--29054736 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
29054689 AAATTTGGTC
*
29054699 TAAAATATTA-TTTATTAA
1 TAAAATATAATTTTATTAA
*
29054717 TAAAATGTAATTTTATTAA
1 TAAAATATAATTTTATTAA
29054736 T
1 T
29054737 TTATATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TAAAATATAATTTTATTAA
Found at i:29060618 original size:9 final size:9
Alignment explanation
Indices: 29060604--29060634 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
29060594 GTTAAACGAA
29060604 TCGAGTTAT
1 TCGAGTTAT
*
29060613 TCGAGTTAA
1 TCGAGTTAT
29060622 TCGAGTTAT
1 TCGAGTTAT
29060631 TCGA
1 TCGA
29060635 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:29060701 original size:9 final size:9
Alignment explanation
Indices: 29060687--29060714 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
29060677 TGAGTTTTCG
29060687 AATTCGAAT
1 AATTCGAAT
29060696 AATTCGAAT
1 AATTCGAAT
29060705 AATTCGAAT
1 AATTCGAAT
29060714 A
1 A
29060715 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:29061675 original size:5 final size:5
Alignment explanation
Indices: 29061665--29061690 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
29061655 CTCGAAAATT
29061665 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
29061691 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:29065698 original size:21 final size:21
Alignment explanation
Indices: 29065672--29065740 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
29065662 CACAGAAGCA
* *
29065672 CATAAGTGCTAAACGGAAACC
1 CATAAGAGCTGAACGGAAACC
* * * *
29065693 CATAAGGGTTGAACGGAAGCT
1 CATAAGAGCTGAACGGAAACC
*
29065714 CATAAGAGCTGAACGAAAACC
1 CATAAGAGCTGAACGGAAACC
29065735 CATAAG
1 CATAAG
29065741 GGTTAAACTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.14
Consensus pattern (21 bp):
CATAAGAGCTGAACGGAAACC
Found at i:29065734 original size:42 final size:42
Alignment explanation
Indices: 29065666--29065768 Score: 143
Period size: 42 Copynumber: 2.5 Consensus size: 42
29065656 AGGCTGCACA
* * * * *
29065666 GAAGCACATAAGTGCTAAACGGAAACCCATAAGGGTTGAACG
1 GAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTAAACG
*
29065708 GAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTAAACT
1 GAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTAAACG
*
29065750 GAAGCTCAAAAGAGCTGAA
1 GAAGCTCATAAGAGCTGAA
29065769 TTGAAACACG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.15
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTTAAACG
Found at i:29065785 original size:42 final size:42
Alignment explanation
Indices: 29065683--29065799 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
29065673 ATAAGTGCTA
* * * *
29065683 AACGGAAACCCATAAGGGTTGAACGGAAGCTCATAAGAGCTG
1 AACGAAAACACATAAGGGTTAAACGGAAGCTCAAAAGAGCTG
* *
29065725 AACGAAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTG
1 AACGAAAACACATAAGGGTTAAACGGAAGCTCAAAAGAGCTG
* * * * *
29065767 AATTG-AAACACGTTAGGGTTAGACGGAAACTCA
1 AA-CGAAAACACATAAGGGTTAAACGGAAGCTCA
29065800 TATGAGTTAA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 62 0.98
43 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.16
Consensus pattern (42 bp):
AACGAAAACACATAAGGGTTAAACGGAAGCTCAAAAGAGCTG
Found at i:29065808 original size:21 final size:20
Alignment explanation
Indices: 29065784--29065836 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 20
29065774 ACACGTTAGG
29065784 GTTAGACGGAAACTCAT-ATGA
1 GTTA-ACGGAAACTCATGA-GA
* *
29065805 GTTAACTGAAGCTCATGAGA
1 GTTAACGGAAACTCATGAGA
29065825 GTTAAACGGAAA
1 GTT-AACGGAAA
29065837 GTAAACACGA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.23
Consensus pattern (20 bp):
GTTAACGGAAACTCATGAGA
Found at i:29066542 original size:121 final size:122
Alignment explanation
Indices: 29066319--29066562 Score: 472
Period size: 121 Copynumber: 2.0 Consensus size: 122
29066309 TTCTGTATTT
29066319 GCAACAAGCCCCCGCTTTGCCTCTACATTCACCAGGATGGTATTTTCCACAATATTTGTATTTAG
1 GCAACAAGCCCCCGCTTTGCCTCTACATTCACCAGGATGGTATTTTCCACAATATTTGTATTTAG
29066384 GCCTAGGAGCATTCTGTGTAACAGCCCAATTTTGACCCTAATCGGAACAGTGGTTTC
66 GCCTAGGAGCATTCTGTGTAACAGCCCAATTTTGACCCTAATCGGAACAGTGGTTTC
29066441 GCAACAAG-CCCCGCTTTGCCTCTACATTCACCAGGATGGTATTTTCCACAATATTTGTATTTAG
1 GCAACAAGCCCCCGCTTTGCCTCTACATTCACCAGGATGGTATTTTCCACAATATTTGTATTTAG
*
29066505 GCCTAGGAGCATTCTGTGTAACAGCCCCATTTTGACCCTAATCGGAACAGTGGTTTC
66 GCCTAGGAGCATTCTGTGTAACAGCCCAATTTTGACCCTAATCGGAACAGTGGTTTC
29066562 G
1 G
29066563 GGACCACAAA
Statistics
Matches: 121, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
121 113 0.93
122 8 0.07
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (122 bp):
GCAACAAGCCCCCGCTTTGCCTCTACATTCACCAGGATGGTATTTTCCACAATATTTGTATTTAG
GCCTAGGAGCATTCTGTGTAACAGCCCAATTTTGACCCTAATCGGAACAGTGGTTTC
Found at i:29068439 original size:47 final size:47
Alignment explanation
Indices: 29068370--29069215 Score: 1647
Period size: 47 Copynumber: 18.0 Consensus size: 47
29068360 NNNNNNNNNN
29068370 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068417 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068464 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068511 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
*
29068558 TTATTTATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068605 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068652 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068699 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068746 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068793 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
*
29068840 TTATTTATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068887 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068934 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29068981 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29069028 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29069075 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
*
29069122 TTATTTATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
* *
29069169 TTATATATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAA
1 TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
29069216 ATTTTGGTGT
Statistics
Matches: 791, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 791 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.39
Consensus pattern (47 bp):
TTATATATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA
Found at i:29072143 original size:21 final size:21
Alignment explanation
Indices: 29072119--29072187 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
29072109 CACAGAAGCA
* *
29072119 CATAAGTGCTAAACGGAAACC
1 CATAAGAGCTGAACGGAAACC
* * * *
29072140 CATAAGGGTTGAACGGAAGCT
1 CATAAGAGCTGAACGGAAACC
* *
29072161 CATAAGAGCTGAACGAAAATC
1 CATAAGAGCTGAACGGAAACC
29072182 CATAAG
1 CATAAG
29072188 GGTAAAACTG
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (21 bp):
CATAAGAGCTGAACGGAAACC
Found at i:29072159 original size:42 final size:42
Alignment explanation
Indices: 29072104--29072190 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
29072094 GAAGCCCTAA
* * *
29072104 GGTTGCACAGAAGCACATAAGTGCTAAACGGAAACCCATAAG
1 GGTTGAACAGAAGCACATAAGAGCTAAACGAAAACCCATAAG
* * * *
29072146 GGTTGAACGGAAGCTCATAAGAGCTGAACGAAAATCCATAAG
1 GGTTGAACAGAAGCACATAAGAGCTAAACGAAAACCCATAAG
29072188 GGT
1 GGT
29072191 AAAACTGAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.16
Consensus pattern (42 bp):
GGTTGAACAGAAGCACATAAGAGCTAAACGAAAACCCATAAG
Found at i:29072201 original size:42 final size:42
Alignment explanation
Indices: 29072113--29072221 Score: 128
Period size: 42 Copynumber: 2.6 Consensus size: 42
29072103 AGGTTGCACA
* * * * **
29072113 GAAGCACATAAGTGCTAAACGGAAACCCATAAGGGTTGAACG
1 GAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTAAAACG
* *
29072155 GAAGCTCATAAGAGCTGAACGAAAATCCATAAGGGTAAAACT
1 GAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTAAAACG
*
29072197 GAAGCTCAAAAGAGCTGAACTGAAA
1 GAAGCTCATAAGAGCTGAAC-GAAA
29072222 CTCGTTAGGG
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
42 53 0.93
43 4 0.07
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTGAACGAAAACCCATAAGGGTAAAACG
Found at i:29082937 original size:3 final size:3
Alignment explanation
Indices: 29082929--29082980 Score: 95
Period size: 3 Copynumber: 17.0 Consensus size: 3
29082919 AAGAGTTTGA
29082929 ATT ATT ATT ATT ATT ATT AATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
29082975 ATT ATT
1 ATT ATT
29082981 TTGTTTTGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:29083957 original size:18 final size:20
Alignment explanation
Indices: 29083917--29083957 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
29083907 ATATAATTTT
*
29083917 AAAATACATATAATACATCA
1 AAAATACATATAAAACATCA
*
29083937 AAAATAC-TA-AAAACATGA
1 AAAATACATATAAAACATCA
29083955 AAA
1 AAA
29083958 TAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 10 0.53
19 2 0.11
20 7 0.37
ACGTcount: A:0.66, C:0.12, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATACATATAAAACATCA
Found at i:29084074 original size:30 final size:30
Alignment explanation
Indices: 29084040--29084102 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
29084030 ACTTAACAAG
29084040 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
** *
29084070 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
29084100 CAA
1 CAA
29084103 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.14, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:29084157 original size:22 final size:22
Alignment explanation
Indices: 29084132--29084174 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
29084122 TATCCAAACA
29084132 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
29084154 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
29084175 AATAGGGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:29089549 original size:13 final size:13
Alignment explanation
Indices: 29089531--29089566 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
29089521 CCTTTTAAGG
29089531 ATATTTTATATTT
1 ATATTTTATATTT
29089544 ATA-TTTATATTT
1 ATATTTTATATTT
*
29089556 AAATTTTATAT
1 ATATTTTATAT
29089567 AANNNNNNNN
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATATTTTATATTT
Found at i:29090329 original size:12 final size:12
Alignment explanation
Indices: 29090312--29090346 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
29090302 CTCTCTATCT
29090312 CCTCCTTCATTC
1 CCTCCTTCATTC
29090324 CCTCCTTCATTC
1 CCTCCTTCATTC
*
29090336 CTTCCTTCATT
1 CCTCCTTCATT
29090347 TCCGGTAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.46, G:0.00, T:0.46
Consensus pattern (12 bp):
CCTCCTTCATTC
Found at i:29090972 original size:13 final size:13
Alignment explanation
Indices: 29090954--29090989 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
29090944 CCTTTTAAGG
29090954 ATATTTTATATTT
1 ATATTTTATATTT
29090967 ATA-TTTATATTT
1 ATATTTTATATTT
*
29090979 AAATTTTATAT
1 ATATTTTATAT
29090990 AANNNNNNNN
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATATTTTATATTT
Found at i:29091764 original size:20 final size:20
Alignment explanation
Indices: 29091739--29091778 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
29091729 AATATTTTCC
*
29091739 AGTAAATTATTTTACAGAAA
1 AGTAAAATATTTTACAGAAA
*
29091759 AGTAAAATATTTTTCAGAAA
1 AGTAAAATATTTTACAGAAA
29091779 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (20 bp):
AGTAAAATATTTTACAGAAA
Found at i:29091793 original size:34 final size:35
Alignment explanation
Indices: 29091727--29091793 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
29091717 CAAACACCAG
*
29091727 AAAATATTTTCCAGTAAATTATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
29091762 AAAATATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
29091794 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:29092438 original size:27 final size:27
Alignment explanation
Indices: 29092397--29092499 Score: 147
Period size: 27 Copynumber: 3.8 Consensus size: 27
29092387 TAGTATTGGC
29092397 GCCTATCT-GGAAGGCGCCAATGGTGGT
1 GCCTATCTAGG-AGGCGCCAATGGTGGT
* *
29092424 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATCTAGGAGGCGCCAATGGTGGT
*
29092451 GCCTATCTAGGATGCGCCAATGGTGGT
1 GCCTATCTAGGAGGCGCCAATGGTGGT
29092478 GCCATAT-TAGGAGGCGCCAATG
1 GCC-TATCTAGGAGGCGCCAATG
29092500 CTGTGATTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
27 64 0.93
28 5 0.07
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.23
Consensus pattern (27 bp):
GCCTATCTAGGAGGCGCCAATGGTGGT
Found at i:29092592 original size:18 final size:19
Alignment explanation
Indices: 29092561--29092610 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
29092551 AAAACGGAAG
*
29092561 AAAGAAGAAGGAAGGAAGCA
1 AAAGAAGAA-GAAGGAAGAA
*
29092581 GAAGAA-AAGAAGGAAGAA
1 AAAGAAGAAGAAGGAAGAA
29092599 AAAGAAGAAGAA
1 AAAGAAGAAGAA
29092611 AAATTAGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 14 0.54
19 7 0.27
20 5 0.19
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (19 bp):
AAAGAAGAAGAAGGAAGAA
Found at i:29092598 original size:12 final size:11
Alignment explanation
Indices: 29092557--29092612 Score: 51
Period size: 13 Copynumber: 4.7 Consensus size: 11
29092547 TACAAAAACG
29092557 GAAG-AAAGAA
1 GAAGAAAAGAA
*
29092567 GAAGGAAGGAAGCA
1 GAA-GAA--AAGAA
29092581 GAAGAAAAGAA
1 GAAGAAAAGAA
29092592 GGAAGAAAAAGAA
1 -GAAG-AAAAGAA
29092605 GAAGAAAA
1 GAAGAAAA
29092613 ATTAGGTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
10 3 0.08
11 9 0.24
12 9 0.24
13 10 0.26
14 7 0.18
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (11 bp):
GAAGAAAAGAA
Found at i:29092613 original size:12 final size:12
Alignment explanation
Indices: 29092561--29092613 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
29092551 AAAACGGAAG
29092561 AAAGAAGAAGGAA
1 AAAGAAGAA-GAA
* *
29092574 GGAAGCAGAAG-A
1 -AAAGAAGAAGAA
29092586 AAAGAAGGAAGAA
1 AAAGAA-GAAGAA
29092599 AAAGAAGAAGAA
1 AAAGAAGAAGAA
29092611 AAA
1 AAA
29092614 TTAGGTATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 4 0.12
12 14 0.42
13 8 0.24
14 7 0.21
ACGTcount: A:0.68, C:0.02, G:0.30, T:0.00
Consensus pattern (12 bp):
AAAGAAGAAGAA
Found at i:29098044 original size:89 final size:89
Alignment explanation
Indices: 29097893--29098070 Score: 329
Period size: 89 Copynumber: 2.0 Consensus size: 89
29097883 CCTTTGGCAA
*
29097893 CCCTCCCCTATTTAGGTTTTAGTCTCCCACTGAACTTTGGCAACATCAGCCCATCTTTTATTGAG
1 CCCTCCCCCATTTAGGTTTTAGTCTCCCACTGAACTTTGGCAACATCAGCCCATCTTTTATTGAG
29097958 ACGGGTTAAGAGAGACCCAATGCC
66 ACGGGTTAAGAGAGACCCAATGCC
* *
29097982 CCCTCCCCCATTTAGGTTTTAGTCTCCCACTGAACTTTGGTAGCATCAGCCCATCTTTTATTGAG
1 CCCTCCCCCATTTAGGTTTTAGTCTCCCACTGAACTTTGGCAACATCAGCCCATCTTTTATTGAG
29098047 ACGGGTTAAGAGAGACCCAATGCC
66 ACGGGTTAAGAGAGACCCAATGCC
29098071 TACAAAGTGC
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (89 bp):
CCCTCCCCCATTTAGGTTTTAGTCTCCCACTGAACTTTGGCAACATCAGCCCATCTTTTATTGAG
ACGGGTTAAGAGAGACCCAATGCC
Found at i:29106369 original size:16 final size:16
Alignment explanation
Indices: 29106348--29106407 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
29106338 GATTACGTTG
29106348 ATTTGAATTATTATAA
1 ATTTGAATTATTATAA
29106364 ATTTGAATATATTGATTTAA
1 ATTTGAAT-TATT-A--TAA
* *
29106384 ATTATGACTTATT-TCA
1 ATT-TGAATTATTATAA
29106400 ATTTGAAT
1 ATTTGAAT
29106408 GAAGTGTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
15 4 0.11
16 13 0.36
17 4 0.11
18 1 0.03
20 10 0.28
21 4 0.11
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.50
Consensus pattern (16 bp):
ATTTGAATTATTATAA
Found at i:29106450 original size:26 final size:26
Alignment explanation
Indices: 29106414--29106489 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
29106404 GAATGAAGTG
*
29106414 TTAATTTAAATCATGGTTTAGTTTTA
1 TTAATTTAAATCATGGTTTAATTTTA
*
29106440 TTAATTCAAATCATGGTTTAATTTTA
1 TTAATTTAAATCATGGTTTAATTTTA
*
29106466 TTAATTTAAATCATAGTTTAATTT
1 TTAATTTAAATCATGGTTTAATTT
29106490 GAAAATATAG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (26 bp):
TTAATTTAAATCATGGTTTAATTTTA
Found at i:29109964 original size:57 final size:57
Alignment explanation
Indices: 29109873--29110000 Score: 202
Period size: 57 Copynumber: 2.2 Consensus size: 57
29109863 ATTGGGTTCC
* *
29109873 TTGGTGACTTTAGGTTTGGGTCCTTTAGAATCAATTTAGGTGGGACCTGTTTCCGTT
1 TTGGTGACTTTAGGTTTGGGTCCTTTAGAATCAATTTAGGTAGGACCTGTTTCCATT
* * * *
29109930 TTGGTAACTTTAGGTTTGGGTCCTTTAGAGTCAATTTAGGTAGGCCCTGTTTCTATT
1 TTGGTGACTTTAGGTTTGGGTCCTTTAGAATCAATTTAGGTAGGACCTGTTTCCATT
29109987 TTGGTGACTTTAGG
1 TTGGTGACTTTAGG
29110001 CTCATGTTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.16, C:0.13, G:0.27, T:0.43
Consensus pattern (57 bp):
TTGGTGACTTTAGGTTTGGGTCCTTTAGAATCAATTTAGGTAGGACCTGTTTCCATT
Found at i:29114173 original size:14 final size:14
Alignment explanation
Indices: 29114154--29114195 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
29114144 GCAAATTTTA
29114154 CTAAAATAAAATAT
1 CTAAAATAAAATAT
29114168 CTAAAATAAATAATAT
1 CTAAAAT-AA-AATAT
*
29114184 -TAAATTAAAATA
1 CTAAAATAAAATA
29114196 ATATAACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 4 0.16
14 9 0.36
15 7 0.28
16 5 0.20
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (14 bp):
CTAAAATAAAATAT
Found at i:29114182 original size:16 final size:16
Alignment explanation
Indices: 29114154--29114199 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
29114144 GCAAATTTTA
29114154 CTAAAAT-AA-AATAT
1 CTAAAATAAATAATAT
29114168 CTAAAATAAATAATAT
1 CTAAAATAAATAATAT
*
29114184 -TAAATTAAAATAATAT
1 CTAAAAT-AAATAATAT
29114200 AACTTTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 7 0.25
15 7 0.25
16 14 0.50
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (16 bp):
CTAAAATAAATAATAT
Found at i:29115987 original size:83 final size:84
Alignment explanation
Indices: 29115882--29116048 Score: 318
Period size: 83 Copynumber: 2.0 Consensus size: 84
29115872 TTATTCAAAT
*
29115882 TCTTGAAAAATAAAATCCTATTAAAAAAATAATATATTTATATTTATAGTAGCTAGTAATAAAAT
1 TCTTGAAAAATAAAATCCTATTAAAAAAAAAATATATTTATATTTATAGTAGCTAGTAATAAAAT
29115947 AACCGGTAAATAATTATTC
66 AACCGGTAAATAATTATTC
29115966 TCTTGAAAAA-AAAATCCTATTAAAAAAAAAATATATTTATATTTATAGTAGCTAGTAATAAAAT
1 TCTTGAAAAATAAAATCCTATTAAAAAAAAAATATATTTATATTTATAGTAGCTAGTAATAAAAT
29116030 AACCGGTAAATAATTATTC
66 AACCGGTAAATAATTATTC
29116049 CCATCCTTAA
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 72 0.88
84 10 0.12
ACGTcount: A:0.50, C:0.08, G:0.07, T:0.35
Consensus pattern (84 bp):
TCTTGAAAAATAAAATCCTATTAAAAAAAAAATATATTTATATTTATAGTAGCTAGTAATAAAAT
AACCGGTAAATAATTATTC
Found at i:29122186 original size:17 final size:18
Alignment explanation
Indices: 29122161--29122194 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
29122151 ATGGTCACCC
*
29122161 CTCTTATTTTT-TTTCTT
1 CTCTCATTTTTCTTTCTT
29122178 CTCTCATTTTTCTTTCT
1 CTCTCATTTTTCTTTCT
29122195 AAACATGCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.71
Consensus pattern (18 bp):
CTCTCATTTTTCTTTCTT
Found at i:29133912 original size:33 final size:33
Alignment explanation
Indices: 29133875--29133941 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
29133865 GGAAGCGAGA
* *
29133875 ATGATGAAGAGGGAGATGAAGAAGAAGAAGAAG
1 ATGATGAAGAAGGAGAAGAAGAAGAAGAAGAAG
* *
29133908 ATGATGATGAAGGAGAAGAAGAGGAAGAAGAAG
1 ATGATGAAGAAGGAGAAGAAGAAGAAGAAGAAG
29133941 A
1 A
29133942 AGAAGTGAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.52, C:0.00, G:0.39, T:0.09
Consensus pattern (33 bp):
ATGATGAAGAAGGAGAAGAAGAAGAAGAAGAAG
Found at i:29133964 original size:3 final size:3
Alignment explanation
Indices: 29133892--29133946 Score: 65
Period size: 3 Copynumber: 18.3 Consensus size: 3
29133882 AGAGGGAGAT
* * * * *
29133892 GAA GAA GAA GAA GAA GAT GAT GAT GAA GGA GAA GAA GAG GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
29133940 GAA GAA G
1 GAA GAA G
29133947 TGAAGCCCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.56, C:0.00, G:0.38, T:0.05
Consensus pattern (3 bp):
GAA
Found at i:29153223 original size:17 final size:18
Alignment explanation
Indices: 29153201--29153248 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
29153191 AATTAAAATG
29153201 TTAAATTTTTATGAAC-T
1 TTAAATTTTTATGAACTT
*
29153218 TTAAATATTTATGAACTTT
1 TTAAATTTTTATGAAC-TT
29153237 TTAAATTTTTAT
1 TTAAATTTTTAT
29153249 TTCTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 15 0.56
19 12 0.44
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.56
Consensus pattern (18 bp):
TTAAATTTTTATGAACTT
Found at i:29156586 original size:20 final size:20
Alignment explanation
Indices: 29156552--29156593 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
29156542 AACTATTTAA
** *
29156552 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
29156572 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
29156592 AT
1 AT
29156594 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:29158238 original size:144 final size:144
Alignment explanation
Indices: 29157974--29158264 Score: 573
Period size: 144 Copynumber: 2.0 Consensus size: 144
29157964 GCCTAAGATT
29157974 TCACGGAACAAGATATTGTGCAAATTTAGTCCCTGAGGATTTGTCCTTACTTCCCTTTTACTATT
1 TCACGGAACAAGATATTGTGCAAATTTAGTCCCTGAGGATTTGTCCTTACTTCCCTTTTACTATT
*
29158039 CTTTTTCATTATTTATTAGGGATATGATATTTTTGGTGTTTTCAACGACCTCATTATTGAGTTTC
66 CTTTTTCATTATTTATTAGGGATATGATATTTTTGGTGTTTTCAACGACCGCATTATTGAGTTTC
29158104 TTGTCATACATTGC
131 TTGTCATACATTGC
29158118 TCACGGAACAAGATATTGTGCAAATTTAGTCCCTGAGGATTTGTCCTTACTTCCCTTTTACTATT
1 TCACGGAACAAGATATTGTGCAAATTTAGTCCCTGAGGATTTGTCCTTACTTCCCTTTTACTATT
29158183 CTTTTTCATTATTTATTAGGGATATGATATTTTTGGTGTTTTCAACGACCGCATTATTGAGTTTC
66 CTTTTTCATTATTTATTAGGGATATGATATTTTTGGTGTTTTCAACGACCGCATTATTGAGTTTC
29158248 TTGTCATACATTGC
131 TTGTCATACATTGC
29158262 TCA
1 TCA
29158265 GTGTGTAGTG
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
144 146 1.00
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.44
Consensus pattern (144 bp):
TCACGGAACAAGATATTGTGCAAATTTAGTCCCTGAGGATTTGTCCTTACTTCCCTTTTACTATT
CTTTTTCATTATTTATTAGGGATATGATATTTTTGGTGTTTTCAACGACCGCATTATTGAGTTTC
TTGTCATACATTGC
Found at i:29159123 original size:16 final size:15
Alignment explanation
Indices: 29159100--29159149 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
29159090 CTCGCAATAC
29159100 ACATAGGTTCGCAGTA
1 ACATAGGTTCGCA-TA
* *
29159116 ATATAGGTTCACATA
1 ACATAGGTTCGCATA
29159131 ACATAGGGTTCGCATA
1 ACATA-GGTTCGCATA
29159147 ACA
1 ACA
29159150 CAACATAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 6 0.21
16 23 0.79
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (15 bp):
ACATAGGTTCGCATA
Found at i:29160202 original size:20 final size:21
Alignment explanation
Indices: 29160177--29160226 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
29160167 TGGATTTTTG
29160177 TTCTTTTTCTTT-TCGTTATT
1 TTCTTTTTCTTTCTCGTTATT
**
29160197 TTCTTTTT-TTTCTTTTTATT
1 TTCTTTTTCTTTCTCGTTATT
*
29160217 TTGTTTTTCT
1 TTCTTTTTCT
29160227 AAATAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 21 0.84
21 1 0.04
ACGTcount: A:0.04, C:0.12, G:0.04, T:0.80
Consensus pattern (21 bp):
TTCTTTTTCTTTCTCGTTATT
Found at i:29174413 original size:45 final size:44
Alignment explanation
Indices: 29174363--29174507 Score: 139
Period size: 45 Copynumber: 3.3 Consensus size: 44
29174353 GAAAAAAGTT
*
29174363 GATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCA
1 GATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAA-CA
*** * * *
29174408 GATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGAAACA
1 GATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAACA
* * * * * *
29174451 GATCTTGTCTCCCCATACTGGTGGTGGAGTAGGTCGAAGAAAACA
1 GATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCAAAG-AAACA
*
29174496 GATCATGTCTTC
1 GATCTTGTCTTC
29174508 ATGTACTGGC
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
43 19 0.23
44 30 0.37
45 32 0.40
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (44 bp):
GATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAACA
Found at i:29174482 original size:44 final size:44
Alignment explanation
Indices: 29174363--29174534 Score: 159
Period size: 44 Copynumber: 3.9 Consensus size: 44
29174353 GAAAAAAGTT
* * *
29174363 GATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCA
1 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAAA-CA
*** *
29174408 GATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGAAACA
1 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAAACA
* * * *
29174451 GATCTTGTCTCCCCATACTGGTGGTGGAGTAGGTCGAAGAAAACA
1 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAG-AAACA
* *** **
29174496 GATCATGTCTTCATGTACTGG-CATGAAGTAGATCAAAGA
1 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGA
29174535 TATTAGGTCC
Statistics
Matches: 100, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
43 20 0.20
44 42 0.42
45 38 0.38
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (44 bp):
GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAAACA
Found at i:29174512 original size:88 final size:88
Alignment explanation
Indices: 29174363--29174534 Score: 254
Period size: 88 Copynumber: 2.0 Consensus size: 88
29174353 GAAAAAAGTT
* * *
29174363 GATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTG
1 GATCTTGCCTCCCCATACTGGTGGCGAAGCAGATCAAAGAAAACAGATCATGTCTTCATGTACTG
*
29174428 GCGTGAAGTAGATCAAAGAAACA
66 GCATGAAGTAGATCAAAGAAACA
* * * * * *
29174451 GATCTTGTCTCCCCATACTGGTGGTGGAGTAGGTCGAAGAAAACAGATCATGTCTTCATGTACTG
1 GATCTTGCCTCCCCATACTGGTGGCGAAGCAGATCAAAGAAAACAGATCATGTCTTCATGTACTG
29174516 GCATGAAGTAGATCAAAGA
66 GCATGAAGTAGATCAAAGA
29174535 TATTAGGTCC
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 74 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (88 bp):
GATCTTGCCTCCCCATACTGGTGGCGAAGCAGATCAAAGAAAACAGATCATGTCTTCATGTACTG
GCATGAAGTAGATCAAAGAAACA
Found at i:29174515 original size:45 final size:44
Alignment explanation
Indices: 29174388--29174534 Score: 170
Period size: 44 Copynumber: 3.3 Consensus size: 44
29174378 TACTGGTGGC
* *
29174388 GAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGGCGT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
* *** *
29174432 GAAGTAGATCAAAG-AAACAGATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGG-CGT
* * * * *
29174476 GGAGTAGGTCGAAGAAAACAGATCATGTCTTCATGTACTGGCAT
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
29174520 GAAGTAGATCAAAGA
1 GAAGTAGATCAAAGA
29174535 TATTAGGTCC
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
43 21 0.26
44 39 0.48
45 21 0.26
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (44 bp):
GAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGT
Found at i:29175731 original size:29 final size:27
Alignment explanation
Indices: 29175699--29175755 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 27
29175689 TGAAATTGGA
*
29175699 TTTTTGTTCTTTTTCTTTTCGTTATTTTC
1 TTTTTGTTCTTTTTATTTT-GTT-TTTTC
*
29175728 TTTTTTTTCTTTTTATTTTGTTTTTTC
1 TTTTTGTTCTTTTTATTTTGTTTTTTC
29175755 T
1 T
29175756 AAATAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 6 0.23
28 3 0.12
29 17 0.65
ACGTcount: A:0.04, C:0.11, G:0.05, T:0.81
Consensus pattern (27 bp):
TTTTTGTTCTTTTTATTTTGTTTTTTC
Found at i:29181198 original size:25 final size:26
Alignment explanation
Indices: 29181147--29181200 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
29181137 TTACTTTCTT
29181147 TATATCTTATGTCACTAAAAAAAATC
1 TATATCTTATGTCACTAAAAAAAATC
29181173 TATATCTTATGTCACT-AAAAAAATC
1 TATATCTTATGTCACTAAAAAAAATC
29181198 TAT
1 TAT
29181201 CGTATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.37
Consensus pattern (26 bp):
TATATCTTATGTCACTAAAAAAAATC
Found at i:29205624 original size:41 final size:43
Alignment explanation
Indices: 29205574--29205654 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 43
29205564 TTGAAAATTT
*
29205574 TAATATTATTTGCTTC-AA-AAAAAATAAAACAATTAAACATG
1 TAATATTATTTACTTCAAATAAAAAATAAAACAATTAAACATG
* *
29205615 TAATCTTATTTACTTCAAAATAAAAAATAAAATAATTAAA
1 TAATATTATTTACTTC-AAATAAAAAATAAAACAATTAAA
29205655 TTAAATTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 14 0.41
43 2 0.06
44 18 0.53
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (43 bp):
TAATATTATTTACTTCAAATAAAAAATAAAACAATTAAACATG
Found at i:29207525 original size:107 final size:107
Alignment explanation
Indices: 29207340--29207540 Score: 269
Period size: 107 Copynumber: 1.9 Consensus size: 107
29207330 AGTGTTTAAA
* **
29207340 TGTAAGACCATAGCTGGGCTATGACATTTTAATGAAAAGACCGTAACTGGGTTATGACACATTGA
1 TGTAAGACCATAGCTGGGCTATGACATTTTAATGAAAAGACCATAACTGGGTTATGACACATACA
*
29207405 AAGTAAAACCATGGTTGGACCATGGCAATATATATATATGTG
66 AAGTAAAACCATGGTAGGACCATGGCAATATATATATATGTG
* * * * * *
29207447 TGTAAGATCATAGCTGGGCTATGGCATTTTGATGATAAGACCATAATTGGGTTATGGCAC-TACA
1 TGTAAGACCATAGCTGGGCTATGACATTTTAATGAAAAGACCATAACTGGGTTATGACACATACA
* * *
29207511 AATGTAAGATCATGGTAGGGCCATGGCAAT
66 AA-GTAAAACCATGGTAGGACCATGGCAAT
29207541 GCATGTGTAA
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
106 4 0.05
107 76 0.95
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.28
Consensus pattern (107 bp):
TGTAAGACCATAGCTGGGCTATGACATTTTAATGAAAAGACCATAACTGGGTTATGACACATACA
AAGTAAAACCATGGTAGGACCATGGCAATATATATATATGTG
Found at i:29207753 original size:16 final size:16
Alignment explanation
Indices: 29207732--29207774 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
29207722 GGGAAAAATG
29207732 TATGATTTATTTACAA
1 TATGATTTATTTACAA
29207748 TATGATTTATTTACAA
1 TATGATTTATTTACAA
* *
29207764 TTTAATTTATT
1 TATGATTTATT
29207775 ATATTAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (16 bp):
TATGATTTATTTACAA
Found at i:29209069 original size:18 final size:19
Alignment explanation
Indices: 29209028--29209078 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
29209018 ATGAAAAAAA
* *
29209028 TAAAATTCAAAAAAAATCTT
1 TAAAATTC-TAAAAAATCTC
*
29209048 TAAAATTTTAAAAAAT-TC
1 TAAAATTCTAAAAAATCTC
29209066 TAAAATTCTAAAA
1 TAAAATTCTAAAA
29209079 TTATTATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 13 0.48
19 7 0.26
20 7 0.26
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAATTCTAAAAAATCTC
Found at i:29214243 original size:3 final size:3
Alignment explanation
Indices: 29214235--29214797 Score: 1108
Period size: 3 Copynumber: 187.7 Consensus size: 3
29214225 TCACTCATCT
29214235 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214283 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214331 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214379 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214427 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214475 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214523 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214571 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214619 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214667 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
29214715 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
29214763 TAA TAA TAA TAA TAA TAA TAA TAC TAA TAT TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
29214798 CTTACCTCGC
Statistics
Matches: 556, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
3 556 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:29215516 original size:20 final size:20
Alignment explanation
Indices: 29215482--29215521 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
29215472 TGCTATTCTG
*
29215482 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
29215502 TTTCTTTTTCT-TTTTATTTC
1 TTTC-TTTTCTGTTTTATTTC
29215522 GTTTGATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:29215704 original size:14 final size:17
Alignment explanation
Indices: 29215685--29215722 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
29215675 ATTTATTTCT
29215685 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
29215699 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
29215716 TAATATA
1 TAATATA
29215723 CTTTATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:29216389 original size:21 final size:20
Alignment explanation
Indices: 29216341--29216391 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
29216331 ATGTTAAAAT
29216341 TTTTTTAAAATAATTTGTAA
1 TTTTTTAAAATAATTTGTAA
* * *
29216361 -TTTATAAAATATTTTTTGAA
1 TTTTTTAAAATAATTTGT-AA
29216381 TTTTTTAAAAT
1 TTTTTTAAAAT
29216392 TTTAAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 14 0.56
20 2 0.08
21 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (20 bp):
TTTTTTAAAATAATTTGTAA
Found at i:29222179 original size:22 final size:22
Alignment explanation
Indices: 29222123--29222179 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
29222113 ATATAAAAAC
**
29222123 AAAACTTTAAAAATATTTTTTAT
1 AAAA-TTTAAAAATATTAATTAT
29222146 AAAATTCT-AAAATATATAATTAT
1 AAAATT-TAAAAATAT-TAATTAT
29222169 -AAATTTAAAAA
1 AAAATTTAAAAA
29222180 ATTCAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
21 1 0.03
22 18 0.62
23 10 0.34
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATTTAAAAATATTAATTAT
Found at i:29226382 original size:30 final size:31
Alignment explanation
Indices: 29226325--29226397 Score: 112
Period size: 30 Copynumber: 2.4 Consensus size: 31
29226315 AAAAAAGATG
* *
29226325 AAGTACCAAATTAAGAAAATGTGTCAAGTTC
1 AAGTACTAAATTAAGAAAATATGTCAAGTTC
*
29226356 ATGTACTAAATTAAGAAAA-ATGTCAAGTTC
1 AAGTACTAAATTAAGAAAATATGTCAAGTTC
29226386 AAGTACTAAATT
1 AAGTACTAAATT
29226398 GGACAAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
30 21 0.55
31 17 0.45
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.29
Consensus pattern (31 bp):
AAGTACTAAATTAAGAAAATATGTCAAGTTC
Found at i:29227836 original size:27 final size:27
Alignment explanation
Indices: 29227806--29227857 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
29227796 AGTATCTAAG
* *
29227806 AAAAAT-TCTATTTTTTATTTTAAAACA
1 AAAAATAT-TATTTTATATTTAAAAACA
29227833 AAAAATATTATTTTATATTTAAAAA
1 AAAAATATTATTTTATATTTAAAAA
29227858 ATTCAGAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (27 bp):
AAAAATATTATTTTATATTTAAAAACA
Found at i:29247221 original size:23 final size:23
Alignment explanation
Indices: 29247169--29247212 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
29247159 GTTGTTGAAT
29247169 AATAATGAATTGATTAAATTGGG
1 AATAATGAATTGATTAAATTGGG
29247192 AATAATGAATTGATTAAATTG
1 AATAATGAATTGATTAAATTG
29247213 TGTAAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (23 bp):
AATAATGAATTGATTAAATTGGG
Found at i:29261983 original size:29 final size:28
Alignment explanation
Indices: 29261944--29262004 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
29261934 GATTTCGCGG
29261944 AAAATGGCCCATTCCGGTAAATTATCAA
1 AAAATGGCCCATTCCGGTAAATTATCAA
* * *
29261972 AAAATCGGCCCATTTCGGTAAATTTTGAA
1 AAAAT-GGCCCATTCCGGTAAATTATCAA
29262001 AAAA
1 AAAA
29262005 AACGGCTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (28 bp):
AAAATGGCCCATTCCGGTAAATTATCAA
Found at i:29268706 original size:3 final size:3
Alignment explanation
Indices: 29268700--29268733 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
29268690 AATCACACCC
29268700 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
29268734 TGGGGATACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:29277472 original size:24 final size:24
Alignment explanation
Indices: 29277439--29277489 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
29277429 TAATACAAGT
*
29277439 AAAAATATG-AGAAAGGTGAAGACA
1 AAAAAGATGAAGAAA-GTGAAGACA
*
29277463 AAAAAGATGATAGAAATTGAAGACA
1 AAAAAGATGA-AGAAAGTGAAGACA
29277488 AA
1 AA
29277490 TATTAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 8 0.35
25 10 0.43
26 5 0.22
ACGTcount: A:0.61, C:0.04, G:0.22, T:0.14
Consensus pattern (24 bp):
AAAAAGATGAAGAAAGTGAAGACA
Found at i:29279949 original size:13 final size:13
Alignment explanation
Indices: 29279931--29279955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29279921 AATGGTCGAG
29279931 TATTAAAAGAGAT
1 TATTAAAAGAGAT
29279944 TATTAAAAGAGA
1 TATTAAAAGAGA
29279956 AAATCACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (13 bp):
TATTAAAAGAGAT
Found at i:29286144 original size:95 final size:95
Alignment explanation
Indices: 29286001--29286287 Score: 314
Period size: 94 Copynumber: 3.0 Consensus size: 95
29285991 CAAATAAGGG
** * * * *
29286001 ATTAGGGTTTAAGGTTTGTCAATTAAATTAATTATAAATTTTT-CAAAATTGGATTA-GGTTTCA
1 ATTAGGGTTTAAGGTTACTTAAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTT-A
* * *
29286064 TGTTTATTGTTTTTTAAGAAAAAATCAATTAA
65 TGTTTA-GGGTTTTTAAGAAAAAATCAAATAA
* * * *
29286096 ATTAGGGTTTAAGGTCACTTAAGTAATTTAATTA-AAATTTTTAAAAAATCAAATTAGGGTTTAG
1 ATTAGGGTTTAAGGTTACTTAAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTA-
* *
29286160 AGTTAAGGGTTTTT-A-AAAAAATCAAATAA
65 TGTTTAGGGTTTTTAAGAAAAAATCAAATAA
* * * *
29286189 ATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTTTATAAAATTAGATTAGGGTTTAG
1 ATTAGGGTTTAAGGTTACTTAAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTA-
*
29286254 TGTTTAGGGTTTTTAAGTAAAAACTCAAATAA
65 TGTTTAGGGTTTTTAAG-AAAAAATCAAATAA
29286286 AT
1 AT
29286288 CAGGATTTGG
Statistics
Matches: 159, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
93 42 0.26
94 48 0.30
95 45 0.28
96 9 0.06
97 15 0.09
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (95 bp):
ATTAGGGTTTAAGGTTACTTAAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTAT
GTTTAGGGTTTTTAAGAAAAAATCAAATAA
Found at i:29286214 original size:93 final size:94
Alignment explanation
Indices: 29286082--29286287 Score: 279
Period size: 93 Copynumber: 2.2 Consensus size: 94
29286072 GTTTTTTAAG
* * *
29286082 AAAAAATCAATTAAATTAGGGTTTAAGGTCACTTAAGTAATTTAATTA-AAATTTTTAAAAAATC
1 AAAAAATCAAATAAATTAGGGTTCAAGGTCACTTAAGTAAATTAATTATAAATTTTTAAAAAATC
29286146 AAATTAGGGTTTAGAGTTAAGGGTTTTTA
66 AAATTAGGGTTTAGAGTTAAGGGTTTTTA
* * * * *
29286175 AAAAAATCAAATAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTTTATAAAATT
1 AAAAAATCAAATAAATTAGGGTTCAAGGTCACTTAAGTAAATTAATTATAAATTTTTAAAAAATC
* * *
29286240 AGATTAGGGTTTAGTGTTTAGGGTTTTTA
66 AAATTAGGGTTTAGAGTTAAGGGTTTTTA
29286269 AGTAAAAACTCAAATAAAT
1 A--AAAAA-TCAAATAAAT
29286288 CAGGATTTGG
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
93 42 0.43
94 41 0.42
96 5 0.05
97 10 0.10
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.37
Consensus pattern (94 bp):
AAAAAATCAAATAAATTAGGGTTCAAGGTCACTTAAGTAAATTAATTATAAATTTTTAAAAAATC
AAATTAGGGTTTAGAGTTAAGGGTTTTTA
Found at i:29297096 original size:35 final size:35
Alignment explanation
Indices: 29297050--29297120 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
29297040 ATTTAAAGTG
29297050 TTGTATCAAGTTGATGTCATAAGTCAACTCGAGAC
1 TTGTATCAAGTTGATGTCATAAGTCAACTCGAGAC
29297085 TTGTATCAAGTTGATGTCATAAGTCAACTCGAGAC
1 TTGTATCAAGTTGATGTCATAAGTCAACTCGAGAC
29297120 T
1 T
29297121 AATTCAATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (35 bp):
TTGTATCAAGTTGATGTCATAAGTCAACTCGAGAC
Found at i:29299523 original size:11 final size:13
Alignment explanation
Indices: 29299503--29299534 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
29299493 TAATTTGAGT
29299503 TTTTTCTTCTT-C
1 TTTTTCTTCTTCC
29299515 TTTTT-TTCTTCC
1 TTTTTCTTCTTCC
29299527 TTTTTCTT
1 TTTTTCTT
29299535 AAATTTAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTCTTCTTCC
Found at i:29310698 original size:44 final size:44
Alignment explanation
Indices: 29310648--29310732 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
29310638 GCCAAATAAT
*
29310648 ATTAAAATAAGCTACACTAATCAAAGTTTAAGTGGGAAACTAAC
1 ATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAACTAAC
* *
29310692 ATTAAAATAACCTATACTAATCAGAGTTTAAGTGGGAAACT
1 ATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAACT
29310733 TAAAATAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.27
Consensus pattern (44 bp):
ATTAAAATAACCTACACTAATCAAAGTTTAAGTGGGAAACTAAC
Found at i:29312647 original size:44 final size:44
Alignment explanation
Indices: 29312597--29312687 Score: 157
Period size: 44 Copynumber: 2.1 Consensus size: 44
29312587 GTAGGTCAAA
*
29312597 TAATATTAAAATAACCTACACTAATTAGAGTTTAAGT-GAGAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTAGA-AAAC
29312641 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTAGAAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTAGAAAAC
29312685 TAA
1 TAA
29312688 AAACAGAGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 43 0.96
45 2 0.04
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTAGAAAAC
Found at i:29314142 original size:103 final size:104
Alignment explanation
Indices: 29313934--29314360 Score: 745
Period size: 103 Copynumber: 4.1 Consensus size: 104
29313924 TGTATATAAA
** * * * *
29313934 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTACTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
29313998 TTGAAATGTGAAA-GGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATG-AAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
29314038 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCA-CATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
29314102 TGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
29314141 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCA-CATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
29314205 TGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
29314244 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
29314309 TGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
29314348 AGGGGTTGCTAAG
1 AGGGGTTGCTAAG
29314361 NNNNNNNNNN
Statistics
Matches: 313, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
102 3 0.01
103 201 0.64
104 108 0.35
105 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:29314289 original size:206 final size:208
Alignment explanation
Indices: 29313934--29314360 Score: 745
Period size: 207 Copynumber: 2.1 Consensus size: 208
29313924 TGTATATAAA
** * *
29313934 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTACTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTACTAAGTGCGTGATCCACCATATCTT
*
29313999 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCG
29314064 ATTCATTGGTGGTGCTAAGTGCGATATCCA-CATATCTTTGAAATGAAAAGGGGGGTTGCTATGT
131 ATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAAGGGGGGTTGCTATGT
29314128 GCTGATTCCCCCG
196 GCTGATTCCCCCG
* *
29314141 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCA-CATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTACTAAGTGCG-TGATCCACCATATCT
29314204 TTGAAATG-AAAAGGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCC
65 TTGAAATGTAAAA-GGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCC
29314268 CGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAAGGGGGGTTGCTAT
129 CGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAAGGGGGGTTGCTAT
29314333 GTGCTGATTCCCCCG
194 GTGCTGATTCCCCCG
29314348 AGGGGTTGCTAAG
1 AGGGGTTGCTAAG
29314361 NNNNNNNNNN
Statistics
Matches: 210, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
205 3 0.01
206 98 0.47
207 108 0.51
208 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (208 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTACTAAGTGCGTGATCCACCATATCTT
TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCG
ATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAAGGGGGGTTGCTATGT
GCTGATTCCCCCG
Found at i:29317103 original size:18 final size:17
Alignment explanation
Indices: 29317076--29317119 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
29317066 CAATAATGCC
*
29317076 CGGGCACAAACCAATAAA
1 CGGGCCCAAACC-ATAAA
*
29317094 CGGGCCCAAACCATTAA
1 CGGGCCCAAACCATAAA
*
29317111 CAGGCCCAA
1 CGGGCCCAA
29317120 CAACTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.41, C:0.34, G:0.18, T:0.07
Consensus pattern (17 bp):
CGGGCCCAAACCATAAA
Found at i:29318204 original size:25 final size:25
Alignment explanation
Indices: 29318176--29318271 Score: 81
Period size: 25 Copynumber: 3.8 Consensus size: 25
29318166 CACGCAGGGC
29318176 TTTTACATAATA-TATATATGCATTT
1 TTTTACAT-ATAGTATATATGCATTT
* * *
29318201 TTTTTCATATAGTACATACGCATATTTT
1 TTTTACATATAGTATATATGC--A-TTT
* *
29318229 TTTATATATATAGTATATATGCATAT
1 TTT-TACATATAGTATATATGCATTT
29318255 TTTTA-ATATA-TATATAT
1 TTTTACATATAGTATATAT
29318272 TTTAGGCTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
23 7 0.12
24 8 0.14
25 16 0.28
26 5 0.09
27 2 0.03
28 6 0.10
29 14 0.24
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.52
Consensus pattern (25 bp):
TTTTACATATAGTATATATGCATTT
Found at i:29318237 original size:27 final size:27
Alignment explanation
Indices: 29318197--29318268 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
29318187 ATATATATGC
29318197 ATTTTTTT-TCATATAGTACATACGCAT
1 ATTTTTTTAT-ATATAGTACATACGCAT
* *
29318224 ATTTTTTTATATATATAGTATATATGCAT
1 A-TTTTTT-TATATATAGTACATACGCAT
*
29318253 ATTTTTAATATATATA
1 ATTTTT-TTATATATA
29318269 TATTTTAGGC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 1 0.03
28 19 0.50
29 17 0.45
30 1 0.03
ACGTcount: A:0.35, C:0.07, G:0.06, T:0.53
Consensus pattern (27 bp):
ATTTTTTTATATATAGTACATACGCAT
Found at i:29318240 original size:29 final size:30
Alignment explanation
Indices: 29318207--29318270 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
29318197 ATTTTTTTTC
*
29318207 ATATAGTACATACGCATATTTTT-TTATAT
1 ATATAGTACATACGCATATTTTTAATATAT
* *
29318236 ATATAGTATATATGCATATTTTTAATATAT
1 ATATAGTACATACGCATATTTTTAATATAT
29318266 ATATA
1 ATATA
29318271 TTTTAGGCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (30 bp):
ATATAGTACATACGCATATTTTTAATATAT
Found at i:29321556 original size:22 final size:22
Alignment explanation
Indices: 29321531--29321572 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
29321521 GCAAATGTTA
29321531 TTTCATTCTTTACGATTTTTTC
1 TTTCATTCTTTACGATTTTTTC
**
29321553 TTTCATTCTTTTGGATTTTT
1 TTTCATTCTTTACGATTTTT
29321573 CTGCCAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.14, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTCATTCTTTACGATTTTTTC
Found at i:29322536 original size:13 final size:14
Alignment explanation
Indices: 29322520--29322562 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
29322510 AGTGATGTAA
29322520 AAAAGTAAAAAT-G
1 AAAAGTAAAAATAG
* *
29322533 AAAACTGAAAATAG
1 AAAAGTAAAAATAG
29322547 AAAAGT-AAAATAG
1 AAAAGTAAAAATAG
29322560 AAA
1 AAA
29322563 GGCTAAGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.70, C:0.02, G:0.14, T:0.14
Consensus pattern (14 bp):
AAAAGTAAAAATAG
Found at i:29324809 original size:132 final size:132
Alignment explanation
Indices: 29323982--29324723 Score: 1270
Period size: 132 Copynumber: 5.6 Consensus size: 132
29323972 GAAGATAACA
* * * * * *
29323982 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAGATGGCAGATTTTACCTCCCTGTGGTTA
1 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
* * *
29324047 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTCA-GCAGCAGCGGAATAGATTGAAGATT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-AGGCATCAGTGGAATAGATTAAAGATT
*
29324111 TCA
130 TCC
* * * * * *
29324114 GATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCATGTGGTTA
1 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
29324179 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
*
29324244 CA
131 CC
* * * *
29324246 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCATGTGGTTA
1 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
29324311 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
29324376 CC
131 CC
29324378 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
1 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
29324443 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
29324508 CC
131 CC
29324510 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
1 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
29324575 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
29324640 CC
131 CC
29324642 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
1 GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
*
29324707 CAGTGGAGTATATTGAA
66 CAGTGGAGTACATTGAA
29324724 ACCAACAATT
Statistics
Matches: 592, Mismatches: 17, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
131 1 0.00
132 591 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (132 bp):
GATCTTGTATCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCAAATTTTACCTCCCTGAGGTTA
CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCATCAGTGGAATAGATTAAAGATTT
CC
Found at i:29324929 original size:44 final size:43
Alignment explanation
Indices: 29324864--29325057 Score: 162
Period size: 44 Copynumber: 4.5 Consensus size: 43
29324854 AATATACAAG
29324864 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-CAGA
* * * *** *
29324908 TTTTATCTCTCTGAAGTTGCAGAGG-GCGGA-TCGCATCCAG-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCCAGA
* ** *
29324948 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCA-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGA-TTAA-AACCCAGA
* * * *
29324992 TCTTATCTCCTTGAAGTTGCAATGGAGTGGATTAAAACCACATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-CAGA
* * *
29325036 TCTCATCTCTCTGACGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
29325058 CAGAGCAGAT
Statistics
Matches: 115, Mismatches: 28, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
40 22 0.19
41 7 0.06
42 6 0.05
43 9 0.08
44 71 0.62
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCCAGA
Found at i:29325436 original size:18 final size:17
Alignment explanation
Indices: 29325409--29325452 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
29325399 TAATAATGCC
*
29325409 CGGGCACAAACCAATAAA
1 CGGGCCCAAACC-ATAAA
*
29325427 CGGGCCCAAACCATTAA
1 CGGGCCCAAACCATAAA
*
29325444 CAGGCCCAA
1 CGGGCCCAA
29325453 CAACTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.41, C:0.34, G:0.18, T:0.07
Consensus pattern (17 bp):
CGGGCCCAAACCATAAA
Found at i:29326455 original size:3 final size:3
Alignment explanation
Indices: 29326449--29326477 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
29326439 TTTGTGTTAC
29326449 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
29326478 CTATATTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:29326528 original size:26 final size:26
Alignment explanation
Indices: 29326499--29326592 Score: 86
Period size: 27 Copynumber: 3.6 Consensus size: 26
29326489 CACGCAGGGC
*
29326499 TTTTACATAATATATATATATGCAT-T
1 TTTTACAT-ATATATACATATGCATAT
* * *
29326525 TTTTTCATATA-GTACATACGCATATTT
1 TTTTACATATATATACATATGCATA--T
*
29326552 TTTTATATATATAGTACATATGCATAT
1 TTTTACATATATA-TACATATGCATAT
29326579 TTTTA-ATATATATA
1 TTTTACATATATATA
29326593 TATTTTAGGC
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
24 9 0.16
25 5 0.09
26 14 0.25
27 16 0.29
29 11 0.20
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (26 bp):
TTTTACATATATATACATATGCATAT
Found at i:29326553 original size:27 final size:29
Alignment explanation
Indices: 29326523--29326582 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
29326513 TATATATGCA
29326523 TTTTTT-T-CATATAGTACATACGCATAT
1 TTTTTTATACATATAGTACATACGCATAT
* *
29326550 TTTTTTATATATATAGTACATATGCATAT
1 TTTTTTATACATATAGTACATACGCATAT
29326579 TTTT
1 TTTT
29326583 AATATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 6 0.21
28 1 0.03
29 22 0.76
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (29 bp):
TTTTTTATACATATAGTACATACGCATAT
Found at i:29326565 original size:29 final size:30
Alignment explanation
Indices: 29326531--29326594 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 30
29326521 CATTTTTTTC
*
29326531 ATATAGTACATACGCATATTTTT-TTATAT
1 ATATAGTACATACGCATATTTTTAATATAT
*
29326560 ATATAGTACATATGCATATTTTTAATATAT
1 ATATAGTACATACGCATATTTTTAATATAT
29326590 ATATA
1 ATATA
29326595 TTTTAGGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 22 0.69
30 10 0.31
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATAGTACATACGCATATTTTTAATATAT
Found at i:29330577 original size:11 final size:11
Alignment explanation
Indices: 29330561--29330586 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
29330551 TATTATGGGC
29330561 AAATAACATGA
1 AAATAACATGA
29330572 AAATAACATGA
1 AAATAACATGA
29330583 AAAT
1 AAAT
29330587 GCAATCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.08, T:0.19
Consensus pattern (11 bp):
AAATAACATGA
Found at i:29337294 original size:20 final size:20
Alignment explanation
Indices: 29337271--29337314 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
29337261 AATTTTTTAT
29337271 ATTAA-TCATAAATTAAATTA
1 ATTAAGTCATAAATTAAA-TA
29337291 ATTAAGTCATAAATTAAATA
1 ATTAAGTCATAAATTAAATA
29337311 ATTA
1 ATTA
29337315 TTTTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (20 bp):
ATTAAGTCATAAATTAAATA
Found at i:29345468 original size:10 final size:10
Alignment explanation
Indices: 29345453--29345495 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
29345443 AACAACTTAT
29345453 TTAAATATAA
1 TTAAATATAA
29345463 TTAAATAATAA
1 TTAAAT-ATAA
*
29345474 TTAATTATAA
1 TTAAATATAA
*
29345484 ATAAATACTAA
1 TTAAATA-TAA
29345495 T
1 T
29345496 AACTCTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 15 0.56
11 12 0.44
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
TTAAATATAA
Found at i:29345482 original size:21 final size:21
Alignment explanation
Indices: 29345453--29345495 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
29345443 AACAACTTAT
*
29345453 TTAAATATAATTAAATAATAA
1 TTAAATATAAATAAATAATAA
* *
29345474 TTAATTATAAATAAATACTAA
1 TTAAATATAAATAAATAATAA
29345495 T
1 T
29345496 AACTCTGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
TTAAATATAAATAAATAATAA
Found at i:29345590 original size:16 final size:16
Alignment explanation
Indices: 29345569--29345607 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
29345559 AGCATTTATT
* *
29345569 TATAATTAATTATTAA
1 TATAATTAAATAATAA
29345585 TATAATTAAATAATAA
1 TATAATTAAATAATAA
29345601 T-TAATTA
1 TATAATTA
29345608 TAAATAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATTAAATAATAA
Found at i:29345884 original size:16 final size:18
Alignment explanation
Indices: 29345853--29345885 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
29345843 TATTAATTAT
29345853 TAATTATTTATATTTAAA
1 TAATTATTTATATTTAAA
29345871 TAATT-TTT-TATTTAA
1 TAATTATTTATATTTAA
29345886 TCTAATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TAATTATTTATATTTAAA
Found at i:29347131 original size:18 final size:19
Alignment explanation
Indices: 29347104--29347143 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
29347094 ATGTATTTAA
29347104 ATATTATTATTT-TAAGAT
1 ATATTATTATTTATAAGAT
*
29347122 ATATTTTTATTTATAAGAT
1 ATATTATTATTTATAAGAT
29347141 ATA
1 ATA
29347144 AAAATAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
ATATTATTATTTATAAGAT
Found at i:29349091 original size:81 final size:82
Alignment explanation
Indices: 29348991--29349153 Score: 319
Period size: 81 Copynumber: 2.0 Consensus size: 82
29348981 TGTGATAAAC
29348991 ACATATAAATACAATATCTATGATTATTTTTTTAATATTTAATTTTATTGAGATTTTAAATTTAT
1 ACATATAAATACAATATCTATGATTATTTTTTTAATATTTAATTTTATTGAGATTTTAAATTTAT
29349056 GTCAATTAAATTATACA
66 GTCAATTAAATTATACA
29349073 ACATATAAAT-CAATATCTATGATTATTTTTTTAATATTTAATTTTATTGAGATTTTAAATTTAT
1 ACATATAAATACAATATCTATGATTATTTTTTTAATATTTAATTTTATTGAGATTTTAAATTTAT
29349137 GTCAATTAAATTATACA
66 GTCAATTAAATTATACA
29349154 TAATAGGGTT
Statistics
Matches: 81, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
81 71 0.88
82 10 0.12
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.49
Consensus pattern (82 bp):
ACATATAAATACAATATCTATGATTATTTTTTTAATATTTAATTTTATTGAGATTTTAAATTTAT
GTCAATTAAATTATACA
Found at i:29358255 original size:23 final size:23
Alignment explanation
Indices: 29358210--29358276 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
29358200 ACAAATGATA
* *
29358210 TAAAATAATATACAAT-AACAATT
1 TAAAATAA-ATAAAATAAAAAATT
* *
29358233 TAAAGTACATAAAATAAAAAATT
1 TAAAATAAATAAAATAAAAAATT
*
29358256 TAAAATAAATAATATAAAAAA
1 TAAAATAAATAAAATAAAAAA
29358277 GAGGTTTCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 6 0.17
23 30 0.83
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (23 bp):
TAAAATAAATAAAATAAAAAATT
Found at i:29358259 original size:14 final size:14
Alignment explanation
Indices: 29358241--29358274 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
29358231 TTTAAAGTAC
29358241 ATAAAATAAAAAAT
1 ATAAAATAAAAAAT
* *
29358255 TTAAAATAAATAAT
1 ATAAAATAAAAAAT
29358269 ATAAAA
1 ATAAAA
29358275 AAGAGGTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAAATAAAAAAT
Found at i:29358494 original size:26 final size:26
Alignment explanation
Indices: 29358465--29358545 Score: 76
Period size: 26 Copynumber: 3.1 Consensus size: 26
29358455 GGCCATTCAT
* *
29358465 AATAAATAATATATGAAATAATTTAA
1 AATAAATAATATATAAAATAATATAA
* *
29358491 AATACATAATATCTAAAATAATATAA
1 AATAAATAATATATAAAATAATATAA
* *
29358517 AACAATCTAATATA-AATAAT-ATATAA
1 AATAA-ATAATATATAA-AATAATATAA
29358543 AAT
1 AAT
29358546 TTAAAATAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 35 0.80
27 9 0.20
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (26 bp):
AATAAATAATATATAAAATAATATAA
Found at i:29358538 original size:24 final size:23
Alignment explanation
Indices: 29358506--29358558 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
29358496 ATAATATCTA
*
29358506 AAATAATATAAAACAATCTAATAT
1 AAATAATATAAAA-AATCTAAAAT
* *
29358530 AAATAATATATAAAATTTAAAAT
1 AAATAATATAAAAAATCTAAAAT
29358553 AAATAA
1 AAATAA
29358559 AAATATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (23 bp):
AAATAATATAAAAAATCTAAAAT
Found at i:29358544 original size:36 final size:37
Alignment explanation
Indices: 29358468--29358545 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 37
29358458 CATTCATAAT
* * * *
29358468 AAATAATATATGAAATAATTTAAAATACATAATATCTA
1 AAATAATATA-GAAACAATCTAAAATAAATAATATATA
*
29358506 AAATAATATA-AAACAATCTAATATAAATAATATATA
1 AAATAATATAGAAACAATCTAAAATAAATAATATATA
29358542 AAAT
1 AAAT
29358546 TTAAAATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 25 0.71
38 10 0.29
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (37 bp):
AAATAATATAGAAACAATCTAAAATAAATAATATATA
Found at i:29360731 original size:20 final size:20
Alignment explanation
Indices: 29360706--29360743 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
29360696 GATGTCCTTT
*
29360706 CATTGATTCCTCCTAAATTG
1 CATTGATTCATCCTAAATTG
*
29360726 CATTGATTTATCCTAAAT
1 CATTGATTCATCCTAAAT
29360744 ATTTCATTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (20 bp):
CATTGATTCATCCTAAATTG
Found at i:29369703 original size:2 final size:2
Alignment explanation
Indices: 29369696--29369734 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
29369686 CTCCTTTCAT
*
29369696 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
29369735 TCACCACACA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.46, G:0.03, T:0.51
Consensus pattern (2 bp):
TC
Found at i:29378314 original size:216 final size:215
Alignment explanation
Indices: 29377919--29379308 Score: 1339
Period size: 216 Copynumber: 6.5 Consensus size: 215
29377909 ACAGTCTTCT
* * * * * * *
29377919 CCTTAGGTACCTCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAAG
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTT-CTCAA-
* * * * ** * * *
29377983 C-CTTTCCTCTTTGGTTGCCTTTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTT
64 CACTCTCCACCTTGGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTTA-TTTTGGTACTTTT
* * * * * * *
29378047 TCCTCAATACTCTCCCCTTTGGGTTCCTCTTCAGGTTCCTTAGTT-TCAACCAGCCTTGATTTTG
128 TCCTCAACACTCTCCCCCTTGGGTGCCTCTTCAGGTTCCTT-CTTCTCAACCAACTTTGGTTTTG
* * *
29378111 GTACATTTTCCTCAACACTCCCCT
192 GTACCTTTTCCTCAACACTCTCCA
* *** * * * *
29378135 TCTTGGGTGTGTCTTCAGGTTCCTTCTTCTCGATCAACTTTGGTTTCCATACCTTCTTCTTAATA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTTCTCAACA
* *
29378200 CTCTCCACCTTAGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTTGATTTTGGTGCTTTTTC
66 CTCTCCACCTTGGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTT-ATTTTGGTACTTTTTC
* ** * * *
29378265 CTCAACCCTCTCTTCCTTGGGTGCCTCATCAGGTTTCTGCTTCTCAACCAACTTTGGTTTTGGTA
130 CTCAACACTCTCCCCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTA
* **
29378330 CCTTTTCCTCATCGGTCTCCA
195 CCTTTTCCTCAACACTCTCCA
* * * * ** *
29378351 CCTTGGGTAACTCTTTAGGTTCCTTATTCTCAATCAACTTTGGTTTCGGTAATTTCTTTTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTTCTCAACA
* * * * *
29378416 CCCTCCACCTTGGGTATCTCTTCAGGTTCCTTTTTCTCAACCAACTTTGATTTTGGTACTTTTTT
66 CTCTCCACCTTGGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTT-ATTTTGGTACTTTTTC
* * * *
29378481 CTCAACAGTCTCCCCCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATA
130 CTCAACACTCTCCCCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTA
* *
29378546 CCTTTTCCTCAACACTCACCC
195 CCTTTTCCTCAACACTCTCCA
* * * * * * * * * *
29378567 CCTTGGATGCATCCTCAGTTTCCTTCTTCTCGATCAACTTCGGTTTTGAAACCTTCTTCTCACCA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTTCTCAACA
* * * *
29378632 CTCTCCACCTTGGGTATCACTCCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTTC
66 CTCTCCACCTTGGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTT-ATTTTGGTACTTTTTC
* * * * * * * * * *
29378697 CTCAACATTCTCCCCCTTTGATGCATCTTTAGGTTCCTTCTTCTCGATCGACTTTTGTTTTGGCA
130 CTCAACACTCTCCCCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTA
29378762 CCTTCTT-CTCAACACTCTCCA
195 CCTT-TTCCTCAACACTCTCCA
* ** * ** * * *
29378783 CCTTGTGTACCTCTTCAGGTTTTTTCTTCTCAACCAACTTCAGTTTTGCTA-CTTTTTCCTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTT-CTCAAC
* * * * *
29378847 ATTCTCC-CCTTGGG-ATGCCTCTTCAGGTTTCTTCTTCTCAACCAACTTTAGTGTTGGTACTTT
65 ACTCTCCACCTTGGGTAT--CTCTCCAAGTTCCTTCTTCTCAACCAACTTTA-TTTTGGTACTTT
** * * * * *
29378910 CGCCTCACCAGTCTCCACCTTGGGTACCTTTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTG
127 TTCCTCAACACTCTCCCCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTG
*
29378975 GTACCTTTTCCTCAACAATCTCCA
192 GTACCTTTTCCTCAACACTCTCCA
*** * * * * *
29378999 CCTTGGGTGTATCTTCAGGTTCCTTTTTCTCGATCAACTTTGGTTTTGGTGCCTTCTTCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTTCTCAACA
* * ** * *
29379064 CTCTCCACCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAAC-----TTTGCTACTTTTTCC
66 CTCTCCACCTTGGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTTATTTTGGTACTTTTTCC
* * *
29379124 TCAACACTCTCCCCCTTGGGTGCCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTTTGGTAC
131 TCAACACTCTCCCCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTAC
29379189 CTTTTCCTCAACACTCTCCA
196 CTTTTCCTCAACACTCTCCA
* * * **
29379209 CCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGCACCTT-TTGCTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTT-CTCAAC
* * * * * *
29379273 ACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTT
65 ACTCTCCACCTTGGGTATCTCTCCAAGTTCCTTCTT
29379309 TGCAGCCATC
Statistics
Matches: 954, Mismatches: 206, Indels: 34
0.80 0.17 0.03
Matches are distributed among these distances:
209 2 0.00
210 171 0.18
214 2 0.00
215 16 0.02
216 745 0.78
217 17 0.02
218 1 0.00
ACGTcount: A:0.15, C:0.31, G:0.13, T:0.42
Consensus pattern (215 bp):
CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCGATACCTTCTTCTCAACA
CTCTCCACCTTGGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTTATTTTGGTACTTTTTCC
TCAACACTCTCCCCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTAC
CTTTTCCTCAACACTCTCCA
Found at i:29379335 original size:72 final size:72
Alignment explanation
Indices: 29377919--29379308 Score: 1153
Period size: 72 Copynumber: 19.4 Consensus size: 72
29377909 ACAGTCTTCT
* * * * * *
29377919 CCTTAGGTACCTCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAGC
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAA-C
* *
29377984 -CTTTCCT
65 ACTCTCCA
* * * * * * *
29377991 CTTTGGTTGCCT-TTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAAT
1 CCTTGGGTACCTCTT-CAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAAC
29378055 ACTCTCC-
65 ACTCTCCA
* * * * * * * *
29378062 CCTTTGGGTTCCTCTTCAGGTTCCTTAGTT-TCAACCAGCCTTGATTTTGGTACATTTTCCTCAA
1 CC-TTGGGTACCTCTTCAGGTTTCTT-CTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAA
* *
29378126 CACTCCCCT
64 CACTCTCCA
* *** * * * **** * *
29378135 TCTTGGGTGTGTCTTCAGGTTCCTTCTTCTCGATCAACTTTGGTTTCCATACCTTCTT-CTTAAT
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTT-TTCCTCAAC
29378199 ACTCTCCA
65 ACTCTCCA
* * * * * * ** * *
29378207 CCTTAGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTTGATTTTGGTGCTTTTTCCTCAACC
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
**
29378272 CTCTCTT
66 CTCTCCA
* * * * * *
29378279 CCTTGGGTGCCTCATCAGGTTTCTGCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCATCG
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
*
29378344 GTCTCCA
66 CTCTCCA
* * * * * * * * **
29378351 CCTTGGGTAACTCTTTAGGTTCCTTATTCTCAATCAACTTTGGTTTCGGTA-ATTTCTTTTCAAC
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTT-TCCTCAAC
*
29378415 ACCCTCCA
65 ACTCTCCA
* * * * * * *
29378423 CCTTGGGTATCTCTTCAGGTTCCTTTTTCTCAACCAACTTTGATTTTGGTACTTTTTTCTCAACA
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
* *
29378488 GTCTCCC
66 CTCTCCA
* * **
29378495 CCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
* *
29378560 CTCACCC
66 CTCTCCA
* * * * * * * ** *
29378567 CCTTGGATGCATCCTCA-GTTTCCTTCTTCTCGATCAACTTCGGTTTTGAAACCTTCTT-CTCAC
1 CCTTGGGTACCTCTTCAGGTTT-CTTCTTCTCAACCAACTTTGGTTTTGGCACCTT-TTCCTCAA
29378630 CACTCTCCA
64 CACTCTCCA
* * * * * * *
29378639 CCTTGGGTATCACTCCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
* *
29378704 TTCTCCC
66 CTCTCCA
* * * * * * * * * *
29378711 CCTTTGATGCATCTTTAGGTTCCTTCTTCTCGATCGACTTTTGTTTTGGCACCTTCTT-CTCAAC
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTT-TTCCTCAAC
29378775 ACTCTCCA
65 ACTCTCCA
* * ** *
29378783 CCTTGTGTACCTCTTCAGGTTTTTTCTTCTCAACCAACTTCAGTTTT-GCTACTTTTTCCTCAAC
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGC-ACCTTTTCCTCAAC
*
29378847 ATTCTCC-
65 ACTCTCCA
* * * * * *
29378854 CCTTGGGATGCCTCTTCAGGTTTCTTCTTCTCAACCAACTTTAGTGTTGGTA-CTTTCGCCTCAC
1 CCTTGGG-TACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTT-TCCTCAA
*
29378918 CAGTCTCCA
64 CACTCTCCA
* * *
29378927 CCTTGGGTACCTTTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
*
29378992 ATCTCCA
66 CTCTCCA
*** * * * * **
29378999 CCTTGGGTGTATCTTCAGGTTCCTTTTTCTCGATCAACTTTGGTTTTGGTGCCTTCTT-CTCAAC
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTT-TTCCTCAAC
29379063 ACTCTCCA
65 ACTCTCCA
* * * * *
29379071 CCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAACTTT-G--CT---ACTTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
*
29379130 CTCTCCC
66 CTCTCCA
* * * *
29379137 CCTTGGGTGCCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
29379202 CTCTCCA
66 CTCTCCA
* * *
29379209 CCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTGCTCAACA
1 CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
* *
29379274 CTTTCCT
66 CTCTCCA
29379281 CCTTGGGTACCTCTTCAGGTTTCTTCTT
1 CCTTGGGTACCTCTTCAGGTTTCTTCTT
29379309 TGCAGCCATC
Statistics
Matches: 1060, Mismatches: 227, Indels: 62
0.79 0.17 0.05
Matches are distributed among these distances:
65 2 0.00
66 53 0.05
67 1 0.00
69 2 0.00
71 29 0.03
72 942 0.89
73 31 0.03
ACGTcount: A:0.15, C:0.31, G:0.13, T:0.42
Consensus pattern (72 bp):
CCTTGGGTACCTCTTCAGGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
CTCTCCA
Found at i:29379335 original size:144 final size:143
Alignment explanation
Indices: 29377919--29379308 Score: 1402
Period size: 144 Copynumber: 9.7 Consensus size: 143
29377909 ACAGTCTTCT
* * * *
29377919 CCTTAGGTACCTCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAGC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAA-C
* * * *
29377984 -CTTTCCTCTTTGGTTGCCT-TTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTT
65 ACTCTCCTCCTTGGGTGCCTCTT-CAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT
*
29378047 TCCTCAATACTCTCC-
129 T-CTCAACACTCTCCA
* * * * * *
29378062 CCTTTGGGTTCCTCTTCAGGTTCCTTAGTT-TCAACCAGCCTTGATTTTGGTACATTTTCCTCAA
1 CC-TTGGGTACCTCTTCAGGTTCCTT-CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAA
* * ** * * ***
29378126 CACTCCCCTTCTTGGGTGTGTCTTCAGGTTCCTTCTTCTCGATCAACTTTGGTTTCCATACCTTC
64 CACTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-
* *
29378191 TTCTTAATACTCTCCA
128 TTCTCAACACTCTCCA
* * * * * * * *
29378207 CCTTAGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTTGATTTTGGTGCTTTTTCCTCAACC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * *
29378272 CTCTCTTCCTTGGGTGCCTCATCAGGTTTCTGCTTCTCAACCAACTTTGGTTTTGGTACCTTTTC
66 CTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTT-
* **
29378337 CTCATCGGTCTCCA
130 CTCAACACTCTCCA
* * * * * * **
29378351 CCTTGGGTAACTCTTTAGGTTCCTTATTCTCAATCAACTTTGGTTTCGGTA-ATTTCTTTTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-TCCTCAAC
* * ** * * *
29378415 ACCCTCCACCTTGGGTATCTCTTCAGGTTCCTTTTTCTCAACCAACTTTGATTTTGGTACTTTTT
65 ACTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTAC-CTTT
* *
29378480 TCTCAACAGTCTCCC
129 TCTCAACACTCTCCA
* *
29378495 CCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * * * * * * * **
29378560 CTCACCCCCTTGGATGCATCCTCAGTTTCCTTCTTCTCGATCAACTTCGGTTTTGAAACCTTCTT
66 CTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TT
*
29378625 CTCACCACTCTCCA
130 CTCAACACTCTCCA
* * * * *
29378639 CCTTGGGTATCACTCCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * * * * * * * * *
29378704 TTCTCCCCCTTTGATGCATCTTTAGGTTCCTTCTTCTCGATCGACTTTTGTTTTGGCACCTTCTT
66 CTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TT
29378769 CTCAACACTCTCCA
130 CTCAACACTCTCCA
* ** ** * *
29378783 CCTTGTGTACCTCTTCAGGTTTTTTCTTCTCAACCAACTTCAGTTTTGCTACTTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * *
29378848 TTCTCC-CCTTGGGATGCCTCTTCAGGTTTCTTCTTCTCAACCAACTTTAGTGTTGGTA-CTTTC
66 CTCTCCTCCTTGGG-TGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-
* * *
29378911 GCCTCACCAGTCTCCA
129 -TCTCAACACTCTCCA
*
29378927 CCTTGGGTACCTTTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * ** * * * *
29378992 ATCTCCACCTTGGGTGTATCTTCAGGTTCCTTTTTCTCGATCAACTTTGGTTTTGGTGCCTTCTT
66 CTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TT
29379057 CTCAACACTCTCCA
130 CTCAACACTCTCCA
* ** * * *
29379071 CCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAAC------TTTGCTACTTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * *
29379130 CTCTCCCCCTTGGGTGCCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTTTGGTACCTTTTC
66 CTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTT-
29379195 CTCAACACTCTCCA
130 CTCAACACTCTCCA
* * *
29379209 CCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTGCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * *
29379274 CTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTT
66 CTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTT
29379309 TGCAGCCATC
Statistics
Matches: 1019, Mismatches: 203, Indels: 49
0.80 0.16 0.04
Matches are distributed among these distances:
137 2 0.00
138 118 0.12
142 1 0.00
143 20 0.02
144 852 0.84
145 25 0.02
146 1 0.00
ACGTcount: A:0.15, C:0.31, G:0.13, T:0.42
Consensus pattern (143 bp):
CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
CTCTCCTCCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTC
TCAACACTCTCCA
Found at i:29379395 original size:117 final size:117
Alignment explanation
Indices: 29379241--29380283 Score: 1087
Period size: 117 Copynumber: 8.9 Consensus size: 117
29379231 CTTCTTCTCA
*
29379241 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
* * * * *
29379306 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * ** *
29379358 ACCAACTTTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
* * * * ****
29379420 CTTTTCGGACAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCAGCGTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* *
29379472 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
** * *
29379537 CAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * **
29379589 ACCAAATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
* * ****
29379654 CTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * ***
29379706 ACCAGCTTTGGTTTTGGCCCCTTTTGCTCAATGGTTTCCTCC-T-G-TACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
* *
29379768 CTTTTC-G---GC-T-AGTTTTGGTACCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTCA
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCA------G------CTTCAGCCTCCTTTTCG
* *
29379826 ACCAACTTTTGTTTTGGCGCCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
* * *
29379891 CTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAG----C--TTCT
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
** * *
29379937 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCT-G-TACCTCTTCATGTTTC
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCT-C-CTTGGTTACCTCTTCAGGTTTC
**
29380000 TTCTTTTCAGCCAATTTCAGTTTTGGTACCTTTTCATCTTCAGCTGCGACTTCAGCCTCCTTTTC
64 TTCTTTTCAGCCAACATCAGTTTTGGTACC---T--TC-TCA-----G-CTTCAGCCTCCTTTTC
29380065 G
117 G
*
29380066 ACCAACTTCT-GTTTTGGCACCTTTTGCTCAACACTTTCGTCCTTGGTTACCTCTTCAGGTTTCT
1 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
*
29380130 TCTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA---T-C--TTCG
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * ** *
29380177 ACCCACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
*
29380242 CTTTTCAGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGC
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
29380284 TTCAGCCTCC
Statistics
Matches: 773, Mismatches: 103, Indels: 104
0.79 0.11 0.11
Matches are distributed among these distances:
108 18 0.02
109 1 0.00
110 2 0.00
111 180 0.23
112 2 0.00
113 5 0.01
114 120 0.16
115 2 0.00
116 4 0.01
117 245 0.32
118 1 0.00
120 47 0.06
121 1 0.00
122 2 0.00
123 34 0.04
124 3 0.00
126 1 0.00
127 4 0.01
128 3 0.00
129 97 0.13
130 1 0.00
ACGTcount: A:0.14, C:0.29, G:0.15, T:0.42
Consensus pattern (117 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
Found at i:29379949 original size:348 final size:340
Alignment explanation
Indices: 29379241--29383195 Score: 2183
Period size: 363 Copynumber: 11.3 Consensus size: 340
29379231 CTTCTTCTCA
*
29379241 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTT
* * * * * * ****
29379306 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCGACCAACTTTGGTT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTT
* * *
29379371 TGGGCATCTTTTGCTGAATGCTTTCCTCGGTTACCTCTTTAGGTTTCTTCTTTTCGGACAACATC
130 TGGGCACCTTTTGCTCAATGCTTTCCTCGGTTACCTCTTCAGGTTTCTTCTTTTCGG---ACATC
* *
29379436 AGTTTTGGTACTTTCTCAGCTTCAGCTTCAGCGTCGACCAACTTTGGTTTTGGCACCTTTTGCTC
192 AGTTTTGGTACTTTCTCAGCTTCAACTTCAGCGTCAACCAACTTTGGTTTTGGCACCTTTTGCTC
* * *
29379501 AACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTTCAGTTCAGCCATCATCTGTTTTGGTACCT
257 AACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAACATCAGTTTTGGTACCT
29379566 TCTCAGCTTCAGCCTCCTTTTCG
322 TCTCAGCTTCAG---CC-TTTCG
* * *
29379589 ACCAAATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGG-TACCTCTTCAGGTTTCTT
* *
29379654 CTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAGCTTTGGTT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTT
* * * *
29379719 TTGGCCCCTTTTGCTCAATGGTTTCCTC-CTGTACCTCTTCAGGTTTCTTCTTTTCGG-C-T-AG
130 TGGGCACCTTTTGCTCAATGCTTTCCTCGGT-TACCTCTTCAGGTTTCTTCTTTTCGGACATCAG
* * * *
29379780 TTTTGGTACCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTCAACCAACTTTTGTTTTGGCG
194 TTTTGGTA-C-T-T--TC-TCAGCTTCAACTTCAG----C--GTCAACCAACTTTGGTTTTGGCA
* ** *
29379845 CCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAACGTCAGT
247 CCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAACATCAGT
* *
29379910 TTTGGTACTTTCTCAGCTTCAG-C-TTCT
312 TTTGGTACCTTCTCAGCTTCAGCCTTTCG
* * *
29379937 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCT-GTACCTCTTCATGTTTCT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCT-C-CTTGGTACCTCTTCAGGTTTCT
** * * *
29380001 TCTTTTCAGCCAATTTCAGTTTTGGTACCTTTTCATCTTCAGCTGCGACTTCAGCCTCCTTTTCG
64 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCA-----G-CTTCAG----C--ATCG
* ** *
29380066 ACCAACTTCT-GTTTTGGCACCTTTTGCTCAACACTTTCGTCCTTGGTTACCTCTTCAGGTTTCT
117 ACCAACTT-TGGTTTGGGCACCTTTTGCTCAATGC-TT--TCCTCGGTTACCTCTTCAGGTTTCT
* * * *
29380130 TCTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCATCTT---CG---ACCCACTTTTGT
178 TCTTTTC-G--GACATCAGTTTTGGTACTTTCTCAGCTTCAACTTCAGCGTCAACCAACTTTGGT
* ** **
29380189 TTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTTCTTTTCAGCCAA
240 TTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAA
*
29380254 AATCAGTTTTGGTACCTTCTCAGCTTCAG-C-TTC-
305 CATCAGTTTTGGTACCTTCTCAGCTTCAGCCTTTCG
** * ** **
29380287 AGCCTCCTTGGGTACCTTTTCAGGTGCCTTCTT-CTCAAC-C--AACT-C-TGGT---T-TT--G
1 A-CCAACTTTGG----TTTT--GGCACCTT-TTGCTCAACGCTTTCCTCCTTGGTACCTCTTCAG
** * * ** * * * ***
29380340 GTACCTT-TTCCTCA-ACAATC-TCCACCTTGGGT--GTGTCTTCAGGTTC--CTTTTTC-TCGA
58 GTTTCTTCTT-TTCAGCCAA-CAT-CAGTTTTGGTACCT-TC-TCAGCTTCAGCTTCAGCATCGA
* * ** ** * * * * *
29380397 TCAACTTTGGTTTTGGTGCCTTCTT-CTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTTTTT
118 CCAACTTTGGTTTGGGCACCTT-TTGCTCAATGCT-T--TCCTCGGTTACCTCTTCAGGTTTCTT
* ** * * * ** *
29380461 CTTTTC--A-ACCAAATTTGCTACTTTTTC--C-TCAA---CA-C-TC-TCCCCCTTGGGTGCCT
179 CTTTTCGGACATCAGTTTTGGTACTTTCTCAGCTTCAACTTCAGCGTCAACCAACTTTGGT---T
** *** * ** * * * ** *
29380514 CCTCAAGTTTCTTCTT-CTCTACCAACTTTGGT-TTTGG-TACCTTTTC----CTCAACA-CTC-
241 --T-TGGCACCTT-TTGCTC-AAC-ACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCA
* * * * *** *
29380570 TCC-AC--C---TTGGGTACC-TCTTTAGGTTCCTTCTTCTCA
300 GCCAACATCAGTTTTGGTACCTTC-TCAGCTTCAGCCTT-TCG
*
29380606 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTT
* * * * * * ****
29380671 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCGACCAACTTTGGTT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTT
* * *
29380736 TGGGCATCTTTTGCTGAATGCTTTCCTCGGTTACCTCTTTAGGTTTCTTCTTTTCGGACAACATC
130 TGGGCACCTTTTGCTCAATGCTTTCCTCGGTTACCTCTTCAGGTTTCTTCTTTTCGG---ACATC
* *
29380801 AGTTTTGGTACTTTCTCAGCTTCAGCTTCAGCGTCGACCAACTTTGGTTTTGGCACCTTTTGCTC
192 AGTTTTGGTACTTTCTCAGCTTCAACTTCAGCGTCAACCAACTTTGGTTTTGGCACCTTTTGCTC
* * * * ** * * * **
29380866 AACACTTTCCTCCTTGGGTATCTCTTTAGGTTTCTTCTTTTCTGCCAATATCAATTGCGGTACCT
257 AACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAACATCAGTTTTGGTACCT
**
29380931 TCTCTTCTTCAG-CTTT-G
322 TCTCAGCTTCAGCCTTTCG
* * * * *
29380948 AGCAACTGTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGG-TACCTCTTCAGGTTTCTT
** * * * ****
29381013 CAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTT
*
29381078 TGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAAC
130 TGGGCACCTTTTGCTCAATGCTTTCCT-C--GGTTACCTCTTCAGGTTTCTTCTTTTC-G--GAC
* * * * * * *
29381143 GTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAGCTTTGGTTTTGGCCCCTTTTG
189 ATCAGTTTTGGTACTTTCTCAGCTTCAACTTCAGCGTCAACCAACTTTGGTTTTGGCACCTTTTG
* *** * * ** *
29381208 CTTAATGGTTTCCTCC-T-G-TACCTCTTCAGGTTTTTTCTTTTCTG----C-T-AGTTTTGGTA
254 CTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAACATCAGTTTTGGTA
*
29381264 CCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTCA
319 CCTTCTCA------G------CTTCAG---CC-TTTCG
* *
29381302 ACCAACTTTTGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGG-TACCTCTTCAGGTTTCTT
* *
29381367 CTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTT---C-T--ACCAACTTTGGTT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTT
* * * ** * * *
29381426 TTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAAT
130 TGGGCACCTTTTGCTCAATGCTTTCCT-C-GGT-TACCTCTTCAGGTTTCTTCTTTTCGGAC-A-
* * * *
29381491 TTCAGTTTTGGTACCTTTTCATCTTCAGCTGCGACTTCAGCCTCCTTTTCGACCAACTTCT-GTT
190 -TCAGTTTTGGTA-C--TT--TC-TCAGCTTCAACTTCAG----C--GTCAACCAACTT-TGGTT
* * * *
29381555 TTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTC-TTTGCAGCCAT
241 TTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTT-CAGCCAA
* * *
29381619 CATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCG
305 CATCAGTTTTGGTACCTTCTCAGCTTCAG---CC-TTTCG
* * * * *
29381659 ACCAACTTTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGG-TACCTCTTCAGGTTTCTT
* * * *
29381721 CTTTTCGGACAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCAGCGTCGACCAACTTTGGTT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTT
* * ** * * *
29381786 TTGGCACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAAT
130 TGGGCACCTTTTGCTCAATGCTTTCCT-C-GGT-TACCTCTTCAGGTTTCTTCTTTTCGGAC-A-
* * * *
29381851 TTCAGTTTTGGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTCGACCAACTTCT-GTT
190 -TCAGTTTTGGTACTTTCTCAGCTTCA------ACTTCAG----C--GTCAACCAACTT-TGGTT
*** * * * **
29381915 TTATTACCTTTTGCTCAACGCTTTCCTCCTTGATTACCTCTTCAGGTTTCTTCTTTTCAGCCAAC
241 TTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAAC
* * *
29381980 TTCAGTTTTGGTACCTTCTTAGCTTCA-TC-TTCG
306 ATCAGTTTTGGTACCTTCTCAGCTTCAGCCTTTCG
* * * * *
29382013 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTT
* * * *
29382078 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTACGACTAACT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAG----C-AT-CGACCAACT
* *
29382143 TTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCTTTTCA
124 TTGGTTTGGGCACCTTTTGCTCAATGCTTTCCT-C--GGTTACCTCTTCAGGTTTCTTCTTTTC-
* * * * * **** * * * *
29382208 GCCAACGTCAGTTTTGTTACCTTCTCAGCTTC-AGTCTCCTTTTGAACCATCCTTGGTTCTGGCA
185 G--GACATCAGTTTTGGTACTTTCTCAGCTTCAACT-TCAGCGTCAACCAACTTTGGTTTTGGCA
* * * * ** * *
29382272 CCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGT
247 CCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAACATCAGT
** * *
29382337 TTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
312 TTTGGT-ACCT-TC----TCAGCTTCA---GCC-TTTCG
* * * *
29382376 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTT
* * *
29382441 CTTTTTAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCATCTT---C-T-G-CCAACTTTGGTT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTT
* * ** * * * *
29382500 TTGGCACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTTCCTTTCAGCCAAT
130 TGGGCACCTTTTGCTCAATGCTTTCCT-C-GGT-TACCTCTTCAGGTTTCTTCTTTTCGGAC-A-
* * * *
29382565 TTCAGTTTTGGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTCGACCAACTTCT-GTT
190 -TCAGTTTTGGTACTTTCTCAGCTTCA------ACTTCAG----C--GTCAACCAACTT-TGGTT
*** * * * **
29382629 TTATTACCTTTTGCTCAACGCTTTCCTCCTTGATTACCTCTTCAGGTTTCTTCTTTTCAGCCAAC
241 TTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAAC
* * *
29382694 TTCAGTTTTGGTACCTTCTTAGCTTCA-TC-TTCG
306 ATCAGTTTTGGTACCTTCTCAGCTTCAGCCTTTCG
* * * * *
29382727 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTT
* * * *
29382792 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTACGACTAACT
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAG----C-AT-CGACCAACT
* *
29382857 TTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCTTTTCA
124 TTGGTTTGGGCACCTTTTGCTCAATGCTTTCCT-C--GGTTACCTCTTCAGGTTTCTTCTTTTC-
* * * * * **** * * * *
29382922 GCCAACGTCAGTTTTGTTACCTTCTCAGCTTC-AGTCTCCTTTTGAACCATCCTTGGTTCTGGCA
185 G--GACATCAGTTTTGGTACTTTCTCAGCTTCAACT-TCAGCGTCAACCAACTTTGGTTTTGGCA
* * * * ** * *
29382986 CCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGT
247 CCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAACATCAGT
** * *
29383051 TTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
312 TTTGGT-ACCT-TC----TCAGCTTCA---GCC-TTTCG
* * * *
29383090 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTT
* **
29383155 CTTTTCAGCCAACTTCAGTTTCAGTACCTTCTCAGCTTCAG
65 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG
29383196 TCTCCTTTTC
Statistics
Matches: 2867, Mismatches: 472, Indels: 521
0.74 0.12 0.13
Matches are distributed among these distances:
311 2 0.00
312 12 0.00
313 1 0.00
314 6 0.00
315 16 0.01
316 2 0.00
317 2 0.00
318 13 0.00
319 1 0.00
320 2 0.00
321 14 0.00
322 5 0.00
323 3 0.00
324 64 0.02
325 8 0.00
326 8 0.00
327 40 0.01
328 8 0.00
329 9 0.00
330 74 0.03
331 8 0.00
332 9 0.00
333 17 0.01
334 1 0.00
336 17 0.01
337 8 0.00
338 4 0.00
339 10 0.00
340 1 0.00
341 2 0.00
342 177 0.06
343 6 0.00
344 13 0.00
345 134 0.05
346 3 0.00
347 8 0.00
348 347 0.12
349 3 0.00
350 9 0.00
351 451 0.16
352 7 0.00
353 11 0.00
354 321 0.11
355 7 0.00
356 8 0.00
357 152 0.05
358 10 0.00
359 1 0.00
360 264 0.09
361 13 0.00
362 8 0.00
363 505 0.18
364 7 0.00
366 3 0.00
367 3 0.00
368 3 0.00
369 26 0.01
ACGTcount: A:0.14, C:0.29, G:0.15, T:0.42
Consensus pattern (340 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTACCTCTTCAGGTTTCTTC
TTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAACTTTGGTTT
GGGCACCTTTTGCTCAATGCTTTCCTCGGTTACCTCTTCAGGTTTCTTCTTTTCGGACATCAGTT
TTGGTACTTTCTCAGCTTCAACTTCAGCGTCAACCAACTTTGGTTTTGGCACCTTTTGCTCAACA
CTTTCCTCCTTGGTTACCTCTTCAAGTTTCTTCAGTTCAGCCAACATCAGTTTTGGTACCTTCTC
AGCTTCAGCCTTTCG
Found at i:29380081 original size:129 final size:129
Alignment explanation
Indices: 29379937--29380170 Score: 332
Period size: 129 Copynumber: 1.8 Consensus size: 129
29379927 TTCAGCTTCT
** *
29379937 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCT-G-TACCTCTTCATGTTTC
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCT-C-CCTGGTTACCTCTTCAGGTTTC
** *
29380000 TTCTTTTCAGCCAATTTCAGTTTTGGTACCTTT-TCATCTTCAGCTGCGACTTCAGCCTCCTTTT
64 TTCTTTTCAGCCAACATCAGTTTTGGTA-CTTTCTCAGCTTCAGCTGCGACTTCAGCCTCCTTTT
29380064 CG
128 CG
* *
29380066 ACCAACTTCT-GTTTTGGCACCTTTTGCTCAACACTTTCGTCCTTGGTTACCTCTTCAGGTTTCT
1 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCCTGGTTACCTCTTCAGGTTTCT
29380130 TCTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA
65 TCTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA
29380171 TCTTCGACCC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
127 2 0.02
128 6 0.06
129 84 0.90
130 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.13, T:0.42
Consensus pattern (129 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCCTGGTTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTGCGACTTCAGCCTCCTTTTCG
Found at i:29380111 original size:240 final size:231
Alignment explanation
Indices: 29379241--29380295 Score: 1078
Period size: 240 Copynumber: 4.5 Consensus size: 231
29379231 CTTCTTCTCA
* *
29379241 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCCT--GTACCTCTTCAGGTTTCTT
* * * *
29379306 CTTTGCAGCCATCATCTGTTTTGGCACC-TTC-TCAG--G--TTCAGCCTCCTTTTCGACCAACT
64 CTTTTCAGCCAACATCAGTTTTGGTACCTTTCTTCAGCTGACTTCAGCCTCCTTTTCGACCAACT
* * * ** * * *
29379365 TTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTTCTTTTCG
129 TT-GTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCA
*
29379427 GACAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCAGCGT
193 GCCAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTT---C-T
* * * *
29379470 CGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTC
1 --ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCCT-G-TACCTCTTCAGGTTTC
** * *
29379535 TTCAGTTCAGCCATCATCTGTTTTGGTACC-TTC-TCA---G-CTTCAGCCTCCTTTTCGACCAA
62 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTTCTTCAGCTGACTTCAGCCTCCTTTTCGACCAA
* * ** *
29379594 ATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTT
127 CTTT-GTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTT
* *
29379659 CAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCAT
191 CAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTT---C-T
* * * *
29379704 CGACCAGCTTTGGTTTTGGCCCCTTTTGCTCAATGGTTTCCT-CCTGTACCTCTTCAGGTTTCTT
1 --ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCCTGTACCTCTTCAGGTTTCTT
* * * *
29379768 CTTTTC-G---GC-T-AGTTTTGGTACCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTCAA
64 CTTTTCAGCCAACATCAGTTTTGGTACC-T-T--TCTTCAGC-T-GACTTCAGCCTCCTTTTCGA
* *
29379827 CCAACTTTTGTTTTGGCGCCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTC
123 CCAAC-TTTGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTC
*
29379892 TTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTTCT
187 TTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCT
* *
29379937 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCT-C-CCTGTACCTCTTCAGGTTTCTT
**
29380002 CTTTTCAGCCAATTTCAGTTTTGGTACCTTTTCATCTTCAGCTGCGACTTCAGCCTCCTTTTCGA
64 CTTTTCAGCCAACATCAGTTTTGGTACC--TT--TCTTCAGCT--GACTTCAGCCTCCTTTTCGA
* *
29380067 CCAACTTCTGTTTTGGCACCTTTTGCTCAACACTTTCGTCCTTGGTTACCTCTTCAGGTTTCTTC
123 CCAACTT-TGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTC
* *
29380132 TTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCATCTTCG
187 TTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCT
* * * * * * *
29380177 ACCCACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCCT--GTACCTCTTCAGGTTTCTT
* *
29380242 CTTTTCAGCCAAAATCAGTTTTGGTACC-TTC-TCAGCTTCAGCTTCAGCCTCCTT
64 CTTTTCAGCCAACATCAGTTTTGGTACCTTTCTTCAGC-TGA-CTTCAGCCTCCTT
29380296 GGGTACCTTT
Statistics
Matches: 728, Mismatches: 62, Indels: 65
0.85 0.07 0.08
Matches are distributed among these distances:
225 11 0.02
226 1 0.00
227 1 0.00
228 1 0.00
230 6 0.01
231 201 0.28
232 2 0.00
233 4 0.01
234 148 0.20
235 4 0.01
237 116 0.16
238 5 0.01
239 5 0.01
240 221 0.30
241 2 0.00
ACGTcount: A:0.14, C:0.29, G:0.15, T:0.42
Consensus pattern (231 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCCTGTACCTCTTCAGGTTTCTTCT
TTTCAGCCAACATCAGTTTTGGTACCTTTCTTCAGCTGACTTCAGCCTCCTTTTCGACCAACTTT
GTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCC
AACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCT
Found at i:29380394 original size:72 final size:72
Alignment explanation
Indices: 29380292--29380673 Score: 436
Period size: 72 Copynumber: 5.4 Consensus size: 72
29380282 GCTTCAGCCT
* * *
29380292 CCTTGGGTACCTTTTCAGGTGCCTTCTTCTCAACCAACTCTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
*
29380357 ATCTCCA
66 CTCTCCA
*** * * * *
29380364 CCTTGGGTGTGTCTTCAGGTTCCTTTTTCTCGATCAACTTTGGTTTTGGTGCCTTCTT-CTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAAC
29380428 ACTCTCCA
65 ACTCTCCA
* ** * * * *
29380436 CCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAA------ATTTGCTACTTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
*
29380495 CTCTCCC
66 CTCTCCA
* * * * *
29380502 CCTTGGGTGCCTCCTCAAGTTTCTTCTTCTCTACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
29380567 CTCTCCA
66 CTCTCCA
* * *
29380574 CCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTGCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* *
29380639 CTTTCCT
66 CTCTCCA
*
29380646 CCTTGGGTACCTCTTCAGGTTTCTTCTT
1 CCTTGGGTACCTCTTCAGGTTCCTTCTT
29380674 TGCAGCCATC
Statistics
Matches: 255, Mismatches: 47, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
65 2 0.01
66 53 0.21
72 198 0.78
73 2 0.01
ACGTcount: A:0.14, C:0.31, G:0.14, T:0.41
Consensus pattern (72 bp):
CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
CTCTCCA
Found at i:29380532 original size:138 final size:138
Alignment explanation
Indices: 29380336--29380615 Score: 373
Period size: 138 Copynumber: 2.0 Consensus size: 138
29380326 CAACTCTGGT
* ** * * * *
29380336 TTTGGTACCTTTTCCTCAACAATCTCCACCTTGGGTGTGTCTTCAGGTTCCTTTTTCTCGATCAA
1 TTTGCTACCTTTTCCTCAACAATCTCCACCTTGGGTGCCTCCTCAAGTTCCTTCTTCTCGACCAA
* ** *
29380401 CTTTGGTTTTGGTGCCTTCTT-CTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTTTTTCTTT
66 CTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTC
29380465 TCAACCAAA
130 TCAACCAAA
* * * * *
29380474 TTTGCTACTTTTTCCTCAACACTCTCCCCCTTGGGTGCCTCCTCAAGTTTCTTCTTCTCTACCAA
1 TTTGCTACCTTTTCCTCAACAATCTCCACCTTGGGTGCCTCCTCAAGTTCCTTCTTCTCGACCAA
* *
29380539 CTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTTAGGTTCCTTCTTCT
66 CTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTCT
*
29380604 CAACCAAC
131 CAACCAAA
29380612 TTTG
1 TTTG
29380616 GTTTTGGCAC
Statistics
Matches: 122, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
137 2 0.02
138 120 0.98
ACGTcount: A:0.15, C:0.31, G:0.12, T:0.41
Consensus pattern (138 bp):
TTTGCTACCTTTTCCTCAACAATCTCCACCTTGGGTGCCTCCTCAAGTTCCTTCTTCTCGACCAA
CTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTCT
CAACCAAA
Found at i:29380692 original size:72 final size:72
Alignment explanation
Indices: 29380187--29380700 Score: 367
Period size: 72 Copynumber: 7.2 Consensus size: 72
29380177 ACCCACTTTT
* * * * * * *
29380187 GTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTTCTTTTCAGCC
1 GTTTTGGCACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTTCTTC-TTTCAACC
* *
29380252 AAAATC-A
65 AACATCTG
* * * * * * * **
29380259 GTTTTGGTACCTTCTCAGCTTCAGC-TTCAGCCTCCTTGGGTACCTTTTCAGGTGCCTTCTTCTC
1 GTTTTGGCACCTTTTC--C-TCAACACTC-TCCACCTTGGGTACCTCTTCAGGTTTCTTCTT-TC
29380323 AACCAAC-TCTG
61 AACCAACATCTG
* * *** * * * *
29380334 GTTTTGGTACCTTTTCCTCAACAATCTCCACCTTGGGTGTGTCTTCAGGTTCCTTTTTCTCGATC
1 GTTTTGGCACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTTCTTCTT-TCAACC
*
29380399 AAC-TTTG
65 AACATCTG
** * *
29380406 GTTTTGGTGCCTTCTT-CTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAAC
1 GTTTTGGCACCTT-TTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTTCTTC-TTTCAAC
29380470 CAA-A----
64 CAACATCTG
* * * * * *
29380474 --TTT-GCTACTTTTTCCTCAACACTCTCCCCCTTGGGTGCCTCCTCAAGTTTCTTCTTCTCTAC
1 GTTTTGGC-ACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTTCTTCTT-TCAAC
*
29380536 CAAC-TTTG
64 CAACATCTG
* * *
29380544 GTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACC
1 GTTTTGGCACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTTCTTCTT-TCAACC
*
29380609 AAC-TTTG
65 AACATCTG
* * * *
29380616 GTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTGCAGCC
1 GTTTTGGCACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTTCTTCTTT-CAACC
*
29380681 ATCATCT-
65 AACATCTG
29380688 GTTTTGGCACCTT
1 GTTTTGGCACCTT
29380701 CTCAGGTTCA
Statistics
Matches: 352, Mismatches: 67, Indels: 46
0.76 0.14 0.10
Matches are distributed among these distances:
65 5 0.01
66 49 0.14
71 1 0.00
72 231 0.66
73 10 0.03
74 6 0.02
75 50 0.14
ACGTcount: A:0.15, C:0.31, G:0.14, T:0.41
Consensus pattern (72 bp):
GTTTTGGCACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTTCTTCTTTCAACCA
ACATCTG
Found at i:29380747 original size:117 final size:117
Alignment explanation
Indices: 29380606--29383313 Score: 2521
Period size: 117 Copynumber: 22.9 Consensus size: 117
29380596 CTTCTTCTCA
29380606 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * *
29380671 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * ** * *
29380723 ACCAACTTTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * ****
29380785 CTTTTCGGACAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCAGCGTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* *
29380837 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTATCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * ** **
29380902 CTTTTCTGCCAATATCAATTGCGGTACCTTCTCTTCTTCAG----C-TTT-G
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * * *
29380948 AGCAACTGTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
** * *
29381013 CAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* ** *
29381065 ACCAACTTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * ****
29381130 CTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * *** *
29381182 ACCAGCTTTGGTTTTGGCCCCTTTTGCTTAATGGTTTCCTCC-T--GTACCTCTTCAGGTTTTTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* *
29381244 CTTTTCTG----C-T-AGTTTTGGTACCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTCA
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCA------G------CTTCAGCCTCCTTTTCG
* *
29381302 ACCAACTTTTGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
29381367 CTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAG----C--TTCT
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
** **** *
29381413 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
**
29381478 CTTTTCAGCCAATTTCAGTTTTGGTACCTTTTCATCTTCAGCTGCGACTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACC---T--TC-TCA-----G-CTTCAGCCTCCTTTTCG
29381542 ACCAACTTCT-GTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
1 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * * * *
29381606 TCTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCG
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * ** * *
29381659 ACCAACTTTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * ****
29381721 CTTTTCGGACAACATCAGTTTTGGTACTTTCTCAGCTTCAGCTTCAGCGTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
*** * ** *
29381773 ACCAACTTTGGTTTTGGCACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
**
29381838 CTTTTCAGCCAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTA-C--CT--TC-TCA-----G-CTTCAGCCTCCTTTTCG
*** * **
29381902 ACCAACTTCT-GTTTTATTACCTTTTGCTCAACGCTTTCCTCCTTGATTACCTCTTCAGGTTTCT
1 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* *
29381966 TCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTTAGCTTCA---T-C--TTCG
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * *
29382013 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
29382078 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTACG
66 CTTTTCAGCCAACATCAGTTTTGGTACC-T-T---C-TCAGCTTCAGCCTCCTTTTCG
* ** * *
29382136 ACTAACTTTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
29382201 CTTTTCAGCCAACGTCAGTTTTGTTACCTTCTCAGCTTCAGTCTCCTTTT-G
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * * *
29382252 AACCATCCTTGGTTCTGGCACCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCT
1 -ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * ** * *
29382317 TCTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
65 TCTTTTCAGCCAACATCAGTTTTGGT-ACCT-TC----TCAGCTTCAGCCTCCTTTTCG
* * *
29382376 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
29382441 CTTTTTAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA---T-CTTCT-G
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
*** * ** *
29382488 -CCAACTTTGGTTTTGGCACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* **
29382552 CCTTTCAGCCAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTA-C--CT--TC-TCA-----G-CTTCAGCCTCCTTTTCG
*** * **
29382616 ACCAACTTCT-GTTTTATTACCTTTTGCTCAACGCTTTCCTCCTTGATTACCTCTTCAGGTTTCT
1 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* *
29382680 TCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTTAGCTTCA---T-C--TTCG
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * *
29382727 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
29382792 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTACG
66 CTTTTCAGCCAACATCAGTTTTGGTACC-T-T---C-TCAGCTTCAGCCTCCTTTTCG
* ** * *
29382850 ACTAACTTTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
29382915 CTTTTCAGCCAACGTCAGTTTTGTTACCTTCTCAGCTTCAGTCTCCTTTT-G
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
* * * * *
29382966 AACCATCCTTGGTTCTGGCACCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCT
1 -ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * ** * *
29383031 TCTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
65 TCTTTTCAGCCAACATCAGTTTTGGT-ACCT-TC----TCAGCTTCAGCCTCCTTTTCG
* * *
29383090 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* ** * *
29383155 CTTTTCAGCCAACTTCAGTTTCAGTACCTTCTCAGCTTCAGTCTCCTTTTCA
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
*** * ** * *
29383207 ACTGGCATTGGTTTTGGCACCACTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCGGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * *
29383272 CTCTTCAGCCAACTTCAGTTTTGATGCCTT-TGCAGCTTCAGC
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCT-CAGCTTCAGC
29383314 TTCAGCTGCA
Statistics
Matches: 2123, Mismatches: 340, Indels: 256
0.78 0.13 0.09
Matches are distributed among these distances:
108 18 0.01
109 1 0.00
110 3 0.00
111 417 0.20
112 5 0.00
113 9 0.00
114 217 0.10
115 3 0.00
116 16 0.01
117 653 0.31
118 10 0.00
119 4 0.00
120 49 0.02
121 9 0.00
122 11 0.01
123 406 0.19
124 8 0.00
126 6 0.00
127 6 0.00
128 5 0.00
129 264 0.12
130 3 0.00
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (117 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
Done.