Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 82 of 135
Found at i:32031058 original size:15 final size:15
Alignment explanation
Indices: 32031038--32031070 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32031028 CTCGAGGAGA
*
32031038 AACAGAGACTTGCTG
1 AACAGAAACTTGCTG
32031053 AACAGAAACTTGCTG
1 AACAGAAACTTGCTG
32031068 AAC
1 AAC
32031071 CTGAAATGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (15 bp):
AACAGAAACTTGCTG
Found at i:32040077 original size:49 final size:49
Alignment explanation
Indices: 32039985--32040078 Score: 127
Period size: 49 Copynumber: 1.9 Consensus size: 49
32039975 ACATTTCAAG
* * *
32039985 TTCAAGTAAATTTAGATTTGGATTATTTCGGATTGTGGGTCATTTTATA
1 TTCAAATAAATTTAGATTTGGATTATTTCGGATTATGGATCATTTTATA
* *
32040034 TTCAAATAAATTTAGGTTTGGATTGTTTCAGG-TTATGGATCATTT
1 TTCAAATAAATTTAGATTTGGATTATTTC-GGATTATGGATCATTT
32040079 GAGGTTCAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
49 37 0.95
50 2 0.05
ACGTcount: A:0.27, C:0.06, G:0.20, T:0.47
Consensus pattern (49 bp):
TTCAAATAAATTTAGATTTGGATTATTTCGGATTATGGATCATTTTATA
Found at i:32044115 original size:27 final size:26
Alignment explanation
Indices: 32044064--32044116 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
32044054 ACTCTCTCTT
*
32044064 TTTCTCTTTATTTTCCATTATCTTTTG
1 TTTCTCTTTATTTTCCA-TACCTTTTG
32044091 TTTCTCCTTCTATTTTCC-TACCTTTT
1 TTTCT-CTT-TATTTTCCATACCTTTT
32044117 CCATGTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 12 0.52
28 3 0.13
29 8 0.35
ACGTcount: A:0.09, C:0.25, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTCTCTTTATTTTCCATACCTTTTG
Found at i:32044325 original size:12 final size:12
Alignment explanation
Indices: 32044308--32044332 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32044298 GAAGAAAATG
32044308 AAAAAAAAAGAA
1 AAAAAAAAAGAA
32044320 AAAAAAAAAGAA
1 AAAAAAAAAGAA
32044332 A
1 A
32044333 GAAAGTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:32046109 original size:67 final size:67
Alignment explanation
Indices: 32045991--32046119 Score: 186
Period size: 67 Copynumber: 1.9 Consensus size: 67
32045981 ATTTGAGAAA
* * * *
32045991 GAAACTATATTGCTTCGTGTAGGAATAGCAATTTCGGAATCGGAGTAATTTGCTTCATTATCAAA
1 GAAACTATATTGCTTCGTGTAGGAATAGCAATTCCAGAATCGGAATAATTTGCTTCACTATCAAA
32046056 CG
66 CG
* * * *
32046058 GAAACTATATTGCTTTGTGTAGGAATAGCAGTTCCAGAATCTGAATCATTTGCTTCACTATC
1 GAAACTATATTGCTTCGTGTAGGAATAGCAATTCCAGAATCGGAATAATTTGCTTCACTATC
32046120 TCTCTATATC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 54 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (67 bp):
GAAACTATATTGCTTCGTGTAGGAATAGCAATTCCAGAATCGGAATAATTTGCTTCACTATCAAA
CG
Found at i:32048478 original size:26 final size:27
Alignment explanation
Indices: 32048442--32048496 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
32048432 TGAATATTCA
32048442 AATTTTAAGAAGT-AGAGTCAGTTATT
1 AATTTTAAGAAGTAAGAGTCAGTTATT
*
32048468 AATTTTGAGAAGTAGAGAGTCAGTTATT
1 AATTTTAAGAAGTA-AGAGTCAGTTATT
32048496 A
1 A
32048497 TTTCCTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 12 0.46
28 14 0.54
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (27 bp):
AATTTTAAGAAGTAAGAGTCAGTTATT
Found at i:32052367 original size:13 final size:13
Alignment explanation
Indices: 32052328--32052377 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
32052318 TATTTAAGAT
32052328 TTTAATATATTTTA
1 TTTAAT-TATTTTA
* * *
32052342 TTTTATAAATTTA
1 TTTAATTATTTTA
32052355 TTTAATTATTTTA
1 TTTAATTATTTTA
*
32052368 ATTAATTATT
1 TTTAATTATT
32052378 AATTATAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
13 24 0.83
14 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATTATTTTA
Found at i:32052405 original size:119 final size:120
Alignment explanation
Indices: 32052266--32052504 Score: 471
Period size: 119 Copynumber: 2.0 Consensus size: 120
32052256 AATGTTCATT
32052266 AAGGATATTAATCTAAAAAAATATTGTCAAATTGTTTTTATATTTTTAATAATATTTAAGATTTT
1 AAGGATATTAATCTAAAAAAATATTGTCAAATTGTTTTTATATTTTTAATAATATTTAAGATTTT
32052331 AATATATTTTATTTTATAAATTTATTTAATTATTTTAATTAA-TTATTAATTATA
66 AATATATTTTATTTTATAAATTTATTTAATTATTTTAATTAATTTATTAATTATA
32052385 AAGGATATTAATCTAAAAAAATATTGTCAAATTGTTTTTATATTTTTAATAATATTTAAGATTTT
1 AAGGATATTAATCTAAAAAAATATTGTCAAATTGTTTTTATATTTTTAATAATATTTAAGATTTT
32052450 AATATATTTTATTTTATAAATTTATTTAATTATTTTAATTAATTTATTAATTATA
66 AATATATTTTATTTTATAAATTTATTTAATTATTTTAATTAATTTATTAATTATA
32052505 TAATTTAAAA
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 107 0.90
120 12 0.10
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (120 bp):
AAGGATATTAATCTAAAAAAATATTGTCAAATTGTTTTTATATTTTTAATAATATTTAAGATTTT
AATATATTTTATTTTATAAATTTATTTAATTATTTTAATTAATTTATTAATTATA
Found at i:32052477 original size:35 final size:37
Alignment explanation
Indices: 32052437--32052511 Score: 93
Period size: 35 Copynumber: 2.1 Consensus size: 37
32052427 TTTTTAATAA
*
32052437 TATTTAA-GATTTTAATATATTTTATT-TTATA-AATT
1 TATTTAATGATTTTAAT-TAATTTATTATTATATAATT
*
32052472 TATTTAATTATTTTAATTAATTTATTAATTATATAATT
1 TATTTAATGATTTTAATTAATTTATT-ATTATATAATT
32052510 TA
1 TA
32052512 AAAATCTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 15 0.44
36 8 0.24
37 5 0.15
38 6 0.18
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (37 bp):
TATTTAATGATTTTAATTAATTTATTATTATATAATT
Found at i:32052484 original size:21 final size:21
Alignment explanation
Indices: 32052458--32052503 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
32052448 TTAATATATT
32052458 TTATTTT-ATAAATTTATTTAA
1 TTATTTTAATAAATTTA-TTAA
*
32052479 TTATTTTAATTAATTTATTAA
1 TTATTTTAATAAATTTATTAA
32052500 TTAT
1 TTAT
32052504 ATAATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATTTTAATAAATTTATTAA
Found at i:32052489 original size:18 final size:18
Alignment explanation
Indices: 32052445--32052495 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
32052435 AATATTTAAG
* *
32052445 ATTTTAATATATTTTATT
1 ATTTTAATTTATTTAATT
*
32052463 -TTATAAATTTATTTAATT
1 ATT-TTAATTTATTTAATT
*
32052481 ATTTTAATTAATTTA
1 ATTTTAATTTATTTA
32052496 TTAATTATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTAATTTATTTAATT
Found at i:32052531 original size:29 final size:28
Alignment explanation
Indices: 32052494--32052550 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
32052484 TTAATTAATT
* *
32052494 TATTAATTATATAATTTAAAAATCTCTTTA
1 TATTAATTAAATAACTT-AAAAT-TCTTTA
32052524 TATT-ATTAAATAACTTAAAATTCTTTA
1 TATTAATTAAATAACTTAAAATTCTTTA
32052551 AAATTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 6 0.24
28 5 0.20
29 10 0.40
30 4 0.16
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (28 bp):
TATTAATTAAATAACTTAAAATTCTTTA
Found at i:32053476 original size:15 final size:15
Alignment explanation
Indices: 32053456--32053489 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32053446 TATGGTAGGA
32053456 TAAAATTTAAAATTT
1 TAAAATTTAAAATTT
**
32053471 TAAAATTTATGATTT
1 TAAAATTTAAAATTT
32053486 TAAA
1 TAAA
32053490 GAAAGGGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
TAAAATTTAAAATTT
Found at i:32054009 original size:9 final size:10
Alignment explanation
Indices: 32053991--32054041 Score: 52
Period size: 9 Copynumber: 5.2 Consensus size: 10
32053981 TTTAATATTT
*
32053991 AAAATTTTAA
1 AAAATATTAA
32054001 AAAA-ATTAA
1 AAAATATTAA
32054010 AAAATATT-A
1 AAAATATTAA
* *
32054019 ACATTATTAA
1 AAAATATTAA
32054029 AAAATATATAA
1 AAAATAT-TAA
32054040 AA
1 AA
32054042 GTTTTAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
9 15 0.45
10 13 0.39
11 5 0.15
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAATATTAA
Found at i:32054048 original size:20 final size:19
Alignment explanation
Indices: 32053991--32054050 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
32053981 TTTAATATTT
* **
32053991 AAAATTTTAAAAAAATTAA
1 AAAATATTAAAATTATTAA
*
32054010 AAAATATTAACATTATTAA
1 AAAATATTAAAATTATTAA
32054029 AAAATATATAAAAGTT-TTAA
1 AAAATAT-TAAAA-TTATTAA
32054049 AA
1 AA
32054051 TTTTAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 22 0.65
20 10 0.29
21 2 0.06
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATATTAAAATTATTAA
Found at i:32057667 original size:33 final size:33
Alignment explanation
Indices: 32057630--32057803 Score: 226
Period size: 33 Copynumber: 5.3 Consensus size: 33
32057620 CTTTACTTTT
* *
32057630 CTCACCTGCTTTTTTAATGGATTCACC-TTCTCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTC-CC
*
32057663 CTCACCTGGATTTTCAATGGATTCACC-TTCTCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTC-CC
*
32057696 CTCACCTGGATTTTCAATGGATTCACCTTTCCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC
* * *
32057729 CTCACCTGCTTTTTCAGTGGATTCACGTTTCCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC
* * *
32057762 CTCGCCTGGATTTTCAATGGGTTCACCTTTCCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC
32057795 CTCACCTGC
1 CTCACCTGC
32057804 TGCTACAGGT
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
33 122 0.98
34 3 0.02
ACGTcount: A:0.15, C:0.34, G:0.13, T:0.37
Consensus pattern (33 bp):
CTCACCTGCATTTTCAATGGATTCACCTTTCCC
Found at i:32061902 original size:31 final size:31
Alignment explanation
Indices: 32061853--32061911 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
32061843 AATAAATTTT
*
32061853 ATAATTTTTTTAATG-TTTTACAATTTTTCAA
1 ATAATTTTTGTAATGTTTTTA-AATTTTTCAA
32061884 ATAATTTTTGT-ATAGTTTTTAAATTTTT
1 ATAATTTTTGTAAT-GTTTTTAAATTTTT
32061912 ATGATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 2 0.08
31 18 0.72
32 5 0.20
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (31 bp):
ATAATTTTTGTAATGTTTTTAAATTTTTCAA
Found at i:32063437 original size:40 final size:39
Alignment explanation
Indices: 32063367--32063459 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 39
32063357 TGAGAGAAAA
* *
32063367 GTCGCAAAAGGTAAGCAATAGCGACATTTTTCTGATAAAC
1 GTCGCAAAAAGTAAGCAATAACGACATTTTT-TGATAAAC
* * *
32063407 GTCGCAAAAAGTGAGCAATAAC-AGCGTTTTTTTATAAAC
1 GTCGCAAAAAGTAAGCAATAACGA-CATTTTTTGATAAAC
*
32063446 GCCGCAAATAAGTA
1 GTCGCAAA-AAGTA
32063460 GTTAATTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 15 0.34
40 29 0.66
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (39 bp):
GTCGCAAAAAGTAAGCAATAACGACATTTTTTGATAAAC
Found at i:32063671 original size:20 final size:20
Alignment explanation
Indices: 32063633--32063671 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32063623 GTCACAGTTG
* *
32063633 TCCTTCAATTCTCTATATTT
1 TCCTTCAAATCGCTATATTT
*
32063653 TCCTTCAAATCGCTTTATT
1 TCCTTCAAATCGCTATATT
32063672 CCAACTGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.03, T:0.51
Consensus pattern (20 bp):
TCCTTCAAATCGCTATATTT
Found at i:32063716 original size:14 final size:14
Alignment explanation
Indices: 32063697--32063726 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32063687 CCTTCTCCCT
*
32063697 TTCGTTTCGTTTCC
1 TTCGTTTCATTTCC
32063711 TTCGTTTCATTTCC
1 TTCGTTTCATTTCC
32063725 TT
1 TT
32063727 TCCATAGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.27, G:0.10, T:0.60
Consensus pattern (14 bp):
TTCGTTTCATTTCC
Found at i:32068631 original size:41 final size:41
Alignment explanation
Indices: 32068593--32068754 Score: 252
Period size: 41 Copynumber: 4.0 Consensus size: 41
32068583 CCCGCTAGAC
* *
32068593 TTATAGCCTGATTCAGATCACCGACACGTAACCTGCTAGGT
1 TTATAACCTGATTCAGATCACCGACACGTAGCCTGCTAGGT
* *
32068634 TTATAACCTGATTCAGATCACCGGCACTTAGCCTGCTAGGT
1 TTATAACCTGATTCAGATCACCGACACGTAGCCTGCTAGGT
* *
32068675 TTATAACCTGATTCAGATCACCGGCACGTAGCTTGCTAGGT
1 TTATAACCTGATTCAGATCACCGACACGTAGCCTGCTAGGT
**
32068716 TTATAACCTGATTCAGATCACCGACAATTAGCCTGCTAG
1 TTATAACCTGATTCAGATCACCGACACGTAGCCTGCTAG
32068755 ACTTAAAGTC
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 111 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (41 bp):
TTATAACCTGATTCAGATCACCGACACGTAGCCTGCTAGGT
Found at i:32068712 original size:82 final size:82
Alignment explanation
Indices: 32068573--32068759 Score: 284
Period size: 82 Copynumber: 2.3 Consensus size: 82
32068563 ACAAATTCAA
* * *
32068573 CGGCACATAGCCCGCTAGACTTATAGCCTGATTCAGATCACCGACACGTAACCTGCTAGGTTTAT
1 CGGCACTTAGCCTGCTAGACTTATAACCTGATTCAGATCACCGACACGTAACCTGCTAGGTTTAT
32068638 AACCTGATTCAGATCAC
66 AACCTGATTCAGATCAC
** * * *
32068655 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGGCACGTAGCTTGCTAGGTTTAT
1 CGGCACTTAGCCTGCTAGACTTATAACCTGATTCAGATCACCGACACGTAACCTGCTAGGTTTAT
32068720 AACCTGATTCAGATCAC
66 AACCTGATTCAGATCAC
* *
32068737 CGACAATTAGCCTGCTAGACTTA
1 CGGCACTTAGCCTGCTAGACTTA
32068760 AAGTCTGAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 93 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (82 bp):
CGGCACTTAGCCTGCTAGACTTATAACCTGATTCAGATCACCGACACGTAACCTGCTAGGTTTAT
AACCTGATTCAGATCAC
Found at i:32072480 original size:43 final size:43
Alignment explanation
Indices: 32072351--32072482 Score: 183
Period size: 43 Copynumber: 3.1 Consensus size: 43
32072341 AAAAGCGCCT
* * * * * *
32072351 CTAAAAGTTATGTTCTTTAGCGGCGTTTGTGGGGAAAGTGCCA
1 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGTCG
** *
32072394 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGAAAAAAGCGTCG
1 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGTCG
32072437 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGTCG
1 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGTCG
32072480 CTA
1 CTA
32072483 TAGCGCCGCT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (43 bp):
CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGTCG
Found at i:32073936 original size:84 final size:85
Alignment explanation
Indices: 32073802--32073964 Score: 319
Period size: 84 Copynumber: 1.9 Consensus size: 85
32073792 TTTAAATATA
32073802 TATAATACATTAAAATAAATGTTTCTCAATAAATTGAAAATAAATTTTAAAAAATATGTATACTT
1 TATAATACATTAAAATAAATGTTTCTCAATAAATTGAAAATAAATTTTAAAAAATATGTATACTT
32073867 AAA-AACACTAAGAAATACG
66 AAATAACACTAAGAAATACG
32073886 TATAATACATTAAAATAAATGTTTCTCAATAAATTGAAAATAAATTTTAAAAAATATGTATACTT
1 TATAATACATTAAAATAAATGTTTCTCAATAAATTGAAAATAAATTTTAAAAAATATGTATACTT
32073951 AAATAACACTAAGA
66 AAATAACACTAAGA
32073965 TAAATGCAAC
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 68 0.87
85 10 0.13
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.33
Consensus pattern (85 bp):
TATAATACATTAAAATAAATGTTTCTCAATAAATTGAAAATAAATTTTAAAAAATATGTATACTT
AAATAACACTAAGAAATACG
Found at i:32075793 original size:43 final size:43
Alignment explanation
Indices: 32075712--32075921 Score: 226
Period size: 43 Copynumber: 4.9 Consensus size: 43
32075702 ATTTTCGATA
* *
32075712 TGTGATTT-CGTGTAAGACCACGTCTAGGACGTTGGCATCAACT
1 TGTG-TTTACGTGTAAGACCACATCTGGGACGTTGGCATCAACT
* * *
32075755 TGTGTTTACGTGTAAGACCACATCTGGGACATTTGCATCGACT
1 TGTGTTTACGTGTAAGACCACATCTGGGACGTTGGCATCAACT
* *
32075798 TATGTTTATGTGTAAGACCACATCTGGGACGTTGGCATCAACT
1 TGTGTTTACGTGTAAGACCACATCTGGGACGTTGGCATCAACT
** * * *
32075841 TGTGTTTACGTGTAAGACCATGTCTAGGACAG-TGGCATCGATT
1 TGTGTTTACGTGTAAGACCACATCTGGGAC-GTTGGCATCAACT
*** * * *
32075884 TGTAAATACATGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTGTTTACGTGTAAGACCACATCTGGGACGTTGGCAT
32075922 TGTACGAGCT
Statistics
Matches: 142, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
42 4 0.03
43 137 0.96
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTGTTTACGTGTAAGACCACATCTGGGACGTTGGCATCAACT
Found at i:32075871 original size:86 final size:85
Alignment explanation
Indices: 32075720--32075921 Score: 280
Period size: 86 Copynumber: 2.4 Consensus size: 85
32075710 TATGTGATTT
*
32075720 CGTGTAAGACCACGTCTAGGACGTTGGCATCAACTTGTGTTTACGTGTAAGACCACATCTGGGAC
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCAACTTGTGTTTACGTGTAAGACCACATCTAGGAC
* * *
32075785 ATTTGCATCGACTTATGT-TTA
66 AGTGGCATCGA-TT-TGTAATA
* * * **
32075806 TGTGTAAGACCACATCTGGGACGTTGGCATCAACTTGTGTTTACGTGTAAGACCATGTCTAGGAC
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCAACTTGTGTTTACGTGTAAGACCACATCTAGGAC
32075871 AGTGGCATCGATTTGTAAATA
66 AGTGGCATCGATTTGT-AATA
*
32075892 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
32075922 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
84 3 0.03
85 2 0.02
86 96 0.95
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (85 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCAACTTGTGTTTACGTGTAAGACCACATCTAGGAC
AGTGGCATCGATTTGTAATA
Found at i:32076957 original size:42 final size:42
Alignment explanation
Indices: 32076856--32077159 Score: 434
Period size: 42 Copynumber: 7.2 Consensus size: 42
32076846 CTAACTTTTT
* * *
32076856 GCGGCGCTTACAGAAAAAAACGCCGCTAAAGGTCATATTCTTTA
1 GCGGCGCTT--AGAAAAAAACGCCACTAAAGATCATGTTCTTTA
32076900 GCGGCGCTTAG-AAAAAACGCCACTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
* *
32076941 GCGGCGCTTAGAAAAAAATGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
*
32076983 GCGGCGCTAAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
* * * *
32077025 ACGGCGCTAAGAAAAAAATGCCACTAAAGATCATGTGC-TTA
1 GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
* *
32077066 GCGGCGCTTGTGAAAAAAACGCCACTAAAGATCGTGTTCTTTA
1 GCGGCGCTT-AGAAAAAAACGCCACTAAAGATCATGTTCTTTA
*
32077109 GCGGCGCTTGGGAAAAAAA-GCCACTAAAGATCATGTTCTTTA
1 GCGGCGCTT-AGAAAAAAACGCCACTAAAGATCATGTTCTTTA
32077151 GCGGCGCTT
1 GCGGCGCTT
32077160 TATCTACAAA
Statistics
Matches: 238, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
41 48 0.20
42 160 0.67
43 21 0.09
44 9 0.04
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (42 bp):
GCGGCGCTTAGAAAAAAACGCCACTAAAGATCATGTTCTTTA
Found at i:32077691 original size:21 final size:21
Alignment explanation
Indices: 32077629--32077694 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
32077619 GCTTTTCTCG
* *
32077629 CTGCTTCTCTCGCTGCGGCAT
1 CTGCTTCTCTCGCTGCAGCCT
* *
32077650 ATGCTTCTCTCGTTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
32077671 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
32077692 CTG
1 CTG
32077695 TTTTAAGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.05, C:0.41, G:0.21, T:0.33
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:32080682 original size:121 final size:121
Alignment explanation
Indices: 32080468--32080812 Score: 620
Period size: 121 Copynumber: 2.9 Consensus size: 121
32080458 NNNNNNNNNN
32080468 ATATAGGTTTTAATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTTCTA
1 ATATAGGTTTTAATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTTCTA
32080533 ATAAAATTGAAATATAGGTTATATATCCATACCATATATGGGCTGATATATTAAAA
66 ATAAAATTGAAATATAGGTTATATATCCATACCATATATGGGCTGATATATTAAAA
32080589 ATATAGGTTTTAATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTTCTA
1 ATATAGGTTTTAATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTTCTA
32080654 ATAAAATTGAAATATAGGTTATATATCCATACCATATATGGGCTGATATATTAAAA
66 ATAAAATTGAAATATAGGTTATATATCCATACCATATATGGGCTGATATATTAAAA
*** * *
32080710 ATATAGGTTTTAATATTTAAAAATAACATTTACAATTATTGGCAAAATTATAAAATTTATTGAC-
1 ATATAGGTTTTAATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATT-TCT
*
32080774 AATAAAATTGGAATATAGGTTATATATCCATACCATATA
65 AATAAAATTGAAATATAGGTTATATATCCATACCATATA
32080813 GCTAAATTTT
Statistics
Matches: 217, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
121 216 1.00
122 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (121 bp):
ATATAGGTTTTAATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTTCTA
ATAAAATTGAAATATAGGTTATATATCCATACCATATATGGGCTGATATATTAAAA
Found at i:32080872 original size:18 final size:18
Alignment explanation
Indices: 32080849--32080937 Score: 74
Period size: 18 Copynumber: 4.8 Consensus size: 18
32080839 ATATATAAAG
32080849 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
32080867 TTTAAGTAATGTAAGTTATAAA
1 TTTAAGTAATGTAA--TAT--A
** * *
32080889 TTTTTGT-ACGTTATATA
1 TTTAAGTAATGTAATATA
*
32080906 TTTAAGTAATGTACTATA
1 TTTAAGTAATGTAATATA
*
32080924 TTTTAGTAA-GTAAT
1 TTTAAGTAATGTAAT
32080938 GTAAGTAATG
Statistics
Matches: 55, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
17 10 0.18
18 29 0.53
19 3 0.05
20 3 0.05
21 4 0.07
22 6 0.11
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.47
Consensus pattern (18 bp):
TTTAAGTAATGTAATATA
Found at i:32080918 original size:22 final size:22
Alignment explanation
Indices: 32080862--32080940 Score: 64
Period size: 22 Copynumber: 3.8 Consensus size: 22
32080852 AAGTAATGTA
*
32080862 ATATATTTAAGTAATGTAAGTT
1 ATATATTTAAGTAATGTACGTT
*
32080884 ATAAATTT---T--TGTACGTT
1 ATATATTTAAGTAATGTACGTT
32080901 ATATATTTAAGTAATGTAC--T
1 ATATATTTAAGTAATGTACGTT
*
32080921 ATATTTTAGTAAGTAATGTA
1 ATATATT--TAAGTAATGTA
32080941 AGTAATGTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
17 14 0.30
19 1 0.02
20 8 0.17
22 23 0.50
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.47
Consensus pattern (22 bp):
ATATATTTAAGTAATGTACGTT
Found at i:32083447 original size:165 final size:165
Alignment explanation
Indices: 32083175--32083538 Score: 728
Period size: 165 Copynumber: 2.2 Consensus size: 165
32083165 TCATAATTTT
32083175 TTGCGGCGTTTACGAATAAAACGCCGCTAATGCCCATTTTTCTGGCGTTTTCTACAAAAACGCCA
1 TTGCGGCGTTTACGAATAAAACGCCGCTAATGCCCATTTTTCTGGCGTTTTCTACAAAAACGCCA
32083240 CTAACAAATTAAATTCTTCTACTGAAACGACACCGTTTTTTAGATATTTTAAAACATTGTTTTTT
66 CTAACAAATTAAATTCTTCTACTGAAACGACACCGTTTTTTAGATATTTTAAAACATTGTTTTTT
32083305 TAATCATATTTAAAAACACAATATATAATTACAAA
131 TAATCATATTTAAAAACACAATATATAATTACAAA
32083340 TTGCGGCGTTTACGAATAAAACGCCGCTAATGCCCATTTTTCTGGCGTTTTCTACAAAAACGCCA
1 TTGCGGCGTTTACGAATAAAACGCCGCTAATGCCCATTTTTCTGGCGTTTTCTACAAAAACGCCA
32083405 CTAACAAATTAAATTCTTCTACTGAAACGACACCGTTTTTTAGATATTTTAAAACATTGTTTTTT
66 CTAACAAATTAAATTCTTCTACTGAAACGACACCGTTTTTTAGATATTTTAAAACATTGTTTTTT
32083470 TAATCATATTTAAAAACACAATATATAATTACAAA
131 TAATCATATTTAAAAACACAATATATAATTACAAA
32083505 TTGCGGCGTTTACGAATAAAACGCCGCTAATGCC
1 TTGCGGCGTTTACGAATAAAACGCCGCTAATGCC
32083539 GTTAATATGC
Statistics
Matches: 199, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
165 199 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.34
Consensus pattern (165 bp):
TTGCGGCGTTTACGAATAAAACGCCGCTAATGCCCATTTTTCTGGCGTTTTCTACAAAAACGCCA
CTAACAAATTAAATTCTTCTACTGAAACGACACCGTTTTTTAGATATTTTAAAACATTGTTTTTT
TAATCATATTTAAAAACACAATATATAATTACAAA
Found at i:32084510 original size:22 final size:21
Alignment explanation
Indices: 32084474--32084581 Score: 93
Period size: 22 Copynumber: 5.2 Consensus size: 21
32084464 TACCCTTGAC
*
32084474 ACCCTAAACCCTAAATCTCTA
1 ACCCTAACCCCTAAATCTCTA
32084495 ACCCTTAACCCCTAAA--TCT-
1 ACCC-TAACCCCTAAATCTCTA
* *
32084514 --CCTAGCCACTAAATTC-CTA
1 ACCCTAACCCCTAAA-TCTCTA
*
32084533 ACCCCTAACCCCTAAATCCCTA
1 A-CCCTAACCCCTAAATCTCTA
32084555 ACCCCTAACCCCTAAATCTCCTA
1 A-CCCTAACCCCTAAATCT-CTA
32084578 ACCC
1 ACCC
32084582 ATAAATCTCC
Statistics
Matches: 71, Mismatches: 6, Indels: 19
0.74 0.06 0.20
Matches are distributed among these distances:
16 9 0.13
17 2 0.03
18 2 0.03
20 3 0.04
21 6 0.08
22 45 0.63
23 4 0.06
ACGTcount: A:0.32, C:0.44, G:0.01, T:0.22
Consensus pattern (21 bp):
ACCCTAACCCCTAAATCTCTA
Found at i:32084587 original size:60 final size:62
Alignment explanation
Indices: 32084475--32084603 Score: 183
Period size: 60 Copynumber: 2.1 Consensus size: 62
32084465 ACCCTTGACA
* * *
32084475 CCCTAAACCCTAAATCTCTAACCCTTAACCCCTAAATCTCCTAGCCACTAAAT-T-CCTAAC
1 CCCTAAACCCTAAATCCCTAACCCCTAACCCCTAAATCTCCTACCCACTAAATCTCCCTAAC
*
32084535 CCCTAACCCCTAAATCCCTAACCCCTAACCCCTAAATCTCCTAACCCA-TAAATCTCCCTAAC
1 CCCTAAACCCTAAATCCCTAACCCCTAACCCCTAAATCTCCT-ACCCACTAAATCTCCCTAAC
*
32084597 CTCTAAA
1 CCCTAAA
32084604 GCATAACACT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
60 44 0.73
61 5 0.08
62 11 0.18
ACGTcount: A:0.33, C:0.43, G:0.01, T:0.23
Consensus pattern (62 bp):
CCCTAAACCCTAAATCCCTAACCCCTAACCCCTAAATCTCCTACCCACTAAATCTCCCTAAC
Found at i:32084596 original size:17 final size:17
Alignment explanation
Indices: 32084557--32084597 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
32084547 AATCCCTAAC
*
32084557 CCCTAACCCCTAAATCT
1 CCCTAACCCATAAATCT
32084574 -CCTAACCCATAAATCT
1 CCCTAACCCATAAATCT
32084590 CCCTAACC
1 CCCTAACC
32084598 TCTAAAGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (17 bp):
CCCTAACCCATAAATCT
Found at i:32084603 original size:17 final size:16
Alignment explanation
Indices: 32084557--32084603 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 16
32084547 AATCCCTAAC
32084557 CCCTAACCCCTAAATCT
1 CCCTAA-CCCTAAATCT
32084574 -CCTAACCCATAAATCT
1 CCCTAACCC-TAAATCT
32084590 CCCTAACCTCTAAA
1 CCCTAACC-CTAAA
32084604 GCATAACACT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 3 0.11
16 12 0.44
17 11 0.41
18 1 0.04
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (16 bp):
CCCTAACCCTAAATCT
Found at i:32085138 original size:40 final size:41
Alignment explanation
Indices: 32085094--32085262 Score: 143
Period size: 41 Copynumber: 4.1 Consensus size: 41
32085084 ATGTTTTTTT
*
32085094 GCGGCGCTTCA-ACAAAAACGCCGCTAAAACCTTAACATTA
1 GCGGCGCTTCACATAAAAACGCCGCTAAAACCTTAACATTA
* * *
32085134 GCGGCG-TTTATCATAAAAACGCCGCTAAAAATCTTAACTTTA
1 GCGGCGCTTCA-CATAAAAACGCCGCT-AAAACCTTAACATTA
* * * * *
32085176 GCGTCGCTT-ACATAAAAACGCCGGCTAAGACC-AAATATTC
1 GCGGCGCTTCACATAAAAACGCC-GCTAAAACCTTAACATTA
* * *
32085216 GCAGCGCTTCA-A-AGAAATCGCCGCTAAATACCTTAACTTTA
1 GCGGCGCTTCACATA-AAAACGCCGCTAAA-ACCTTAACATTA
32085257 GCGGCG
1 GCGGCG
32085263 GTTGATTAAA
Statistics
Matches: 100, Mismatches: 20, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
39 9 0.09
40 28 0.28
41 39 0.39
42 22 0.22
43 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (41 bp):
GCGGCGCTTCACATAAAAACGCCGCTAAAACCTTAACATTA
Found at i:32085153 original size:41 final size:41
Alignment explanation
Indices: 32085107--32085287 Score: 133
Period size: 41 Copynumber: 4.4 Consensus size: 41
32085097 GCGCTTCAAC
32085107 AAAAACGCCGCTAAAACCTTAACATTAGCGGCGTTTATCAT
1 AAAAACGCCGCTAAAACCTTAACATTAGCGGCGTTTATCAT
* * * *
32085148 AAAAACGCCGCTAAAAATCTTAACTTTAGCGTCGCTTA-CAT
1 AAAAACGCCGCT-AAAACCTTAACATTAGCGGCGTTTATCAT
* * * * * *
32085189 AAAAACGCCGGCTAAGACC-AAATATTCGCAGCG-CT-TCA-
1 AAAAACGCC-GCTAAAACCTTAACATTAGCGGCGTTTATCAT
* *
32085227 AAGAAATCGCCGCTAAATACCTTAACTTTAGCGGCGGTTGAT--T
1 AA-AAA-CGCCGCTAAA-ACCTTAACATTAGCGGC-GTTTATCAT
* *
32085270 AAAAACGCCACGAAAACC
1 AAAAACGCCGCTAAAACC
32085288 CCCGACCATT
Statistics
Matches: 106, Mismatches: 23, Indels: 23
0.70 0.15 0.15
Matches are distributed among these distances:
38 2 0.02
39 11 0.10
40 18 0.17
41 44 0.42
42 28 0.26
43 2 0.02
44 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (41 bp):
AAAAACGCCGCTAAAACCTTAACATTAGCGGCGTTTATCAT
Found at i:32090141 original size:31 final size:30
Alignment explanation
Indices: 32090106--32090170 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
32090096 TTTATTGTTA
* * *
32090106 AATTTGACTCTTAATTTTTTAAAAAGAGTCG
1 AATTT-ACTATTAACTTTTTAAAAAAAGTCG
* *
32090137 AATTTAGTATTAACTTTTTAAAAAAAGTTG
1 AATTTACTATTAACTTTTTAAAAAAAGTCG
32090167 AATT
1 AATT
32090171 GTTATTTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (30 bp):
AATTTACTATTAACTTTTTAAAAAAAGTCG
Found at i:32091423 original size:26 final size:28
Alignment explanation
Indices: 32091389--32091442 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
32091379 TTTATGTGTC
32091389 TTTTCGTTA-CTTT-TGTCAATTTTTAG
1 TTTTCGTTAGCTTTATGTCAATTTTTAG
* * *
32091415 TTTTTGTTAGTTTTATGTCATTTTTTAG
1 TTTTCGTTAGCTTTATGTCAATTTTTAG
32091443 ACCCAAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 8 0.35
27 3 0.13
28 12 0.52
ACGTcount: A:0.15, C:0.07, G:0.13, T:0.65
Consensus pattern (28 bp):
TTTTCGTTAGCTTTATGTCAATTTTTAG
Found at i:32104728 original size:52 final size:52
Alignment explanation
Indices: 32104657--32104811 Score: 292
Period size: 52 Copynumber: 3.0 Consensus size: 52
32104647 CTAAGAACTT
* *
32104657 TGTCTTTCACTTTGTAAAAGTAGATTCCCTCTTATCTGCTCGTTTAACTTTA
1 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
32104709 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
1 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
32104761 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTT
1 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTT
32104812 TATCCCCTAT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 101 1.00
ACGTcount: A:0.19, C:0.23, G:0.13, T:0.45
Consensus pattern (52 bp):
TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
Found at i:32105895 original size:29 final size:28
Alignment explanation
Indices: 32105861--32105957 Score: 113
Period size: 29 Copynumber: 3.3 Consensus size: 28
32105851 ACAAAAATAA
32105861 AAAATTACATTTTGACCCCTAAAATTTTT
1 AAAATTACATTTT-ACCCCTAAAATTTTT
* * * *
32105890 GAAATTTCACTTTAACCCCTCAAATTTTT
1 AAAATTACA-TTTTACCCCTAAAATTTTT
*
32105919 AAAATTACATTTTAACCCTAAAATTTTCT
1 AAAATTACATTTTACCCCTAAAATTTT-T
32105948 CAAAATTACA
1 -AAAATTACA
32105958 CTTTGGCCCT
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 15 0.27
29 29 0.52
30 12 0.21
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (28 bp):
AAAATTACATTTTACCCCTAAAATTTTT
Found at i:32106355 original size:15 final size:16
Alignment explanation
Indices: 32106323--32106362 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
32106313 GCAAACAAAG
*
32106323 AAGAAA-AAAAGAGCA
1 AAGAAAGAAAAGAGAA
32106338 AAGAAAGAAAAGA-AA
1 AAGAAAGAAAAGAGAA
32106353 AAG-AAGAAAA
1 AAGAAAGAAAA
32106363 TAGGGGAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 7 0.30
15 10 0.43
16 6 0.26
ACGTcount: A:0.78, C:0.03, G:0.20, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAAAGAGAA
Found at i:32106355 original size:22 final size:20
Alignment explanation
Indices: 32106293--32106356 Score: 74
Period size: 22 Copynumber: 3.0 Consensus size: 20
32106283 AGCAATAATA
*
32106293 CAAAAAAGTAAAAAAAAATAG
1 CAAAAAAG-AAAAAAAAAGAG
32106314 CAAACAAAGAAGAAAAAAAGAG
1 CAAA-AAAGAA-AAAAAAAGAG
32106336 CAAAGAAAGAAAAGAAAAAGA
1 CAAA-AAAGAAAA-AAAAAGA
32106357 AGAAAATAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
21 8 0.21
22 30 0.79
ACGTcount: A:0.75, C:0.06, G:0.16, T:0.03
Consensus pattern (20 bp):
CAAAAAAGAAAAAAAAAGAG
Found at i:32106449 original size:4 final size:4
Alignment explanation
Indices: 32106440--32106498 Score: 65
Period size: 4 Copynumber: 15.8 Consensus size: 4
32106430 GCTGATCGGC
*
32106440 AAAG AAAG AAAGG AAGG AAAG -AAG -AAG AAAG AAAG -AAG AAAG -AAG
1 AAAG AAAG AAA-G AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
32106485 AAAG AAAG -AAG AAA
1 AAAG AAAG AAAG AAA
32106499 AGGGGAAGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
3 15 0.31
4 30 0.62
5 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:32106475 original size:11 final size:11
Alignment explanation
Indices: 32106441--32106498 Score: 70
Period size: 11 Copynumber: 5.5 Consensus size: 11
32106431 CTGATCGGCA
32106441 AAGAAAGAAAG
1 AAGAAAGAAAG
*
32106452 --GAAGGAAAG
1 AAGAAAGAAAG
32106461 AAG-AAGAAAG
1 AAGAAAGAAAG
32106471 AA-AGAAGAAAG
1 AAGA-AAGAAAG
32106482 AAGAAAGAAAG
1 AAGAAAGAAAG
32106493 AAGAAA
1 AAGAAA
32106499 AGGGGAAGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 8 0.20
10 8 0.20
11 23 0.57
12 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
AAGAAAGAAAG
Found at i:32106498 original size:7 final size:7
Alignment explanation
Indices: 32106440--32106490 Score: 59
Period size: 7 Copynumber: 6.9 Consensus size: 7
32106430 GCTGATCGGC
32106440 AAAGAAAG
1 AAAG-AAG
32106448 AAAGGAAGG
1 AAA-GAA-G
32106457 AAAGAAG
1 AAAGAAG
32106464 -AAGAAAG
1 AAAG-AAG
32106471 AAAGAAG
1 AAAGAAG
32106478 AAAGAAG
1 AAAGAAG
32106485 AAAGAA
1 AAAGAA
32106491 AGAAGAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
6 3 0.08
7 20 0.51
8 11 0.28
9 5 0.13
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (7 bp):
AAAGAAG
Found at i:32106507 original size:18 final size:19
Alignment explanation
Indices: 32106441--32106527 Score: 81
Period size: 18 Copynumber: 4.5 Consensus size: 19
32106431 CTGATCGGCA
32106441 AAGAAAGAAAGGAAGGAAAGAAG
1 AAGAAAGAAA-GAA-G-AA-AAG
32106464 AAGAAAGAAAGAAG-AAAG
1 AAGAAAGAAAGAAGAAAAG
32106482 AAGAAAGAAAGAAGAAAAG
1 AAGAAAGAAAGAAGAAAAG
* * *
32106501 -GGGAAGAAGGAAGAAAA-
1 AAGAAAGAAAGAAGAAAAG
*
32106518 AAAAAAGAAA
1 AAGAAAGAAA
32106528 ATATTTTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
18 36 0.65
19 5 0.09
21 1 0.02
22 3 0.05
23 10 0.18
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAAGAAGAAAAG
Found at i:32106790 original size:26 final size:23
Alignment explanation
Indices: 32106749--32106801 Score: 61
Period size: 26 Copynumber: 2.2 Consensus size: 23
32106739 GCAGGCCTGT
32106749 AGCAGCCCAGTCCCCAGCAGCCC
1 AGCAGCCCAGTCCCCAGCAGCCC
**
32106772 AGCAGGCCCAGTTCGCCCATTAGCCC
1 AGCA-GCCCAG-TC-CCCAGCAGCCC
32106798 AGCA
1 AGCA
32106802 AAAAAAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 4 0.16
24 6 0.24
25 2 0.08
26 13 0.52
ACGTcount: A:0.23, C:0.45, G:0.23, T:0.09
Consensus pattern (23 bp):
AGCAGCCCAGTCCCCAGCAGCCC
Found at i:32106821 original size:14 final size:13
Alignment explanation
Indices: 32106801--32106856 Score: 58
Period size: 14 Copynumber: 4.1 Consensus size: 13
32106791 TTAGCCCAGC
*
32106801 AAAAAAAAAGGAG
1 AAAAAAAAAGAAG
32106814 AGAAAAAAAAGAAG
1 A-AAAAAAAAGAAG
*
32106828 AAAAAGAAAAGAAA
1 AAAAA-AAAAGAAG
*
32106842 AAAGAAAAAAAAAG
1 AAA-AAAAAAGAAG
32106856 A
1 A
32106857 GGTTCAATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
13 5 0.14
14 29 0.81
15 2 0.06
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAG
Found at i:32106831 original size:11 final size:11
Alignment explanation
Indices: 32106803--32106856 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 11
32106793 AGCCCAGCAA
32106803 AAAAAAAGGAGAG
1 AAAAAAA-GA-AG
32106816 AAAAAAAAGAAG
1 -AAAAAAAGAAG
32106828 AAAAAGAA-AAG
1 AAAAA-AAGAAG
32106839 -AAAAAAGAA-
1 AAAAAAAGAAG
32106848 AAAAAAAGA
1 AAAAAAAGA
32106857 GGTTCAATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
9 2 0.05
10 14 0.38
11 8 0.22
12 4 0.11
13 2 0.05
14 7 0.19
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAG
Found at i:32106835 original size:18 final size:18
Alignment explanation
Indices: 32106814--32106856 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
32106804 AAAAAAGGAG
32106814 AGAAAA-AAAAGAAGAAAA
1 AGAAAAGAAAA-AAGAAAA
32106832 AGAAAAGAAAAAAGAAAA
1 AGAAAAGAAAAAAGAAAA
32106850 A-AAAAGA
1 AGAAAAGA
32106857 GGTTCAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 14 0.58
19 4 0.17
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (18 bp):
AGAAAAGAAAAAAGAAAA
Found at i:32106845 original size:12 final size:12
Alignment explanation
Indices: 32106804--32106854 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
32106794 GCCCAGCAAA
* *
32106804 AAAAAAGGAGAG
1 AAAAAAGAAAAG
32106816 AAAAAA-AAGAAG
1 AAAAAAGAA-AAG
32106828 -AAAAAGAAAAG
1 AAAAAAGAAAAG
32106839 AAAAAAGAAAA-
1 AAAAAAGAAAAG
32106850 AAAAA
1 AAAAA
32106855 GAGGTTCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 14 0.41
12 20 0.59
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:32113942 original size:173 final size:173
Alignment explanation
Indices: 32113634--32113968 Score: 537
Period size: 173 Copynumber: 1.9 Consensus size: 173
32113624 CAAAGCACCC
* * *
32113634 AAGAACTTAGGCAAATGTAAACACAAATTCCTAGATGTACAAAGCATTAGCAAGATACTCCAAAA
1 AAGAACTTAGGCAAATGTAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAAATACTCCAAAA
* * *
32113699 CATTATAGTAAAAACTAGTGAGACATCAGACCGAAGAAGAAACTTTATAAGGTTAAAAGAAACAA
66 CATTATAGTAAAAACTAGAGAGACATCAGACCGAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
32113764 TTGAAGGGATAAAAATATAGAAGAATAAAAAAATATAATAGTA
131 TTGAAGGGATAAAAATATAGAAGAATAAAAAAATATAATAGTA
* * *
32113807 AAGAATTTAGGGAAATGTAAACACAAATCCCTAGAAGTACAAAGCATTAGGAAAATACTCC-AAA
1 AAGAACTTAGGCAAATGTAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAAATACTCCAAAA
* * *
32113871 CTATTATAGTAAAGACTAGAGAGACATCAGACTGAAGAAGAAACTTGACAAGGTTAAAAGAAACT
66 C-ATTATAGTAAAAACTAGAGAGACATCAGACCGAAGAAGAAACTTGACAAGGTTAAAAGAAACA
*
32113936 ATTGAAGGGATAAAAATATAGAAGAATCAAAAA
130 ATTGAAGGGATAAAAATATAGAAGAATAAAAAA
32113969 CCACGAGTTA
Statistics
Matches: 148, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
172 4 0.03
173 144 0.97
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.20
Consensus pattern (173 bp):
AAGAACTTAGGCAAATGTAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAAATACTCCAAAA
CATTATAGTAAAAACTAGAGAGACATCAGACCGAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
TTGAAGGGATAAAAATATAGAAGAATAAAAAAATATAATAGTA
Found at i:32117437 original size:126 final size:126
Alignment explanation
Indices: 32117182--32117585 Score: 621
Period size: 126 Copynumber: 3.2 Consensus size: 126
32117172 GATAAAATCA
* * * * * * *
32117182 AAGCAGGATTCTTTATCAGAAGAATTTCTGAAGTCGCGCCCACATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
32117247 AGGTCCTACAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
66 AGGTCCTAGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
32117307 AAGCATGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGCCGCGCTTTTACTACAAT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
32117372 AGGTCCTAGAAGAAATAATTTCGATTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTC
66 AGGTCCTAGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
*
32117433 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* * * *
32117498 AGGTCCTGGAAGAAATAATTTCGACTTGATGTTTATGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTAGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
32117559 AAGCAGGATGCTTTATGAGAAGAATTT
1 AAGCAGGATGCTTTATGAGAAGAATTT
32117586 AGGGTTTTTA
Statistics
Matches: 253, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
125 64 0.25
126 189 0.75
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (126 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTAGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:32117608 original size:22 final size:22
Alignment explanation
Indices: 32117583--32117738 Score: 105
Period size: 22 Copynumber: 7.3 Consensus size: 22
32117573 ATGAGAAGAA
32117583 TTTAGGGTTTTTAAGTTAAGGG
1 TTTAGGGTTTTTAAGTTAAGGG
*
32117605 TTTAGGGTTTTTAAGTTAAGAG
1 TTTAGGGTTTTTAAGTTAAGGG
*
32117627 -TTA--GTGTTTAAGGTT-AGGG
1 TTTAGGGTTTTTAA-GTTAAGGG
* *
32117646 ----GGTTTTAAATTAAGTCAAGGG
1 TTTAGGGTTT---TTAAGTTAAGGG
** * *
32117667 TTTAAAGTTTTTAAGTCATGGG
1 TTTAGGGTTTTTAAGTTAAGGG
* *
32117689 TTTAGGGTTTGTAAGTTAAGTG
1 TTTAGGGTTTTTAAGTTAAGGG
* *
32117711 TTTAGGGTTTTAAAGTCAAGGG
1 TTTAGGGTTTTTAAGTTAAGGG
32117733 -TTAGGG
1 TTTAGGG
32117739 ATTAGGGTTT
Statistics
Matches: 103, Mismatches: 20, Indels: 23
0.71 0.14 0.16
Matches are distributed among these distances:
18 2 0.02
19 10 0.10
20 5 0.05
21 17 0.17
22 66 0.64
25 3 0.03
ACGTcount: A:0.26, C:0.02, G:0.31, T:0.42
Consensus pattern (22 bp):
TTTAGGGTTTTTAAGTTAAGGG
Found at i:32117777 original size:27 final size:26
Alignment explanation
Indices: 32117747--32117797 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
32117737 GGATTAGGGT
*
32117747 TTAAGGTTTAAGGTTAAGAGATTTAAA
1 TTAAGGGTTAAGGTTAAG-GATTTAAA
* *
32117774 TTAAGGGTTAGGGTTTAGGATTTA
1 TTAAGGGTTAAGGTTAAGGATTTA
32117798 GGTTTTAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.39
Consensus pattern (26 bp):
TTAAGGGTTAAGGTTAAGGATTTAAA
Found at i:32117797 original size:7 final size:7
Alignment explanation
Indices: 32117777--32117817 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
32117767 ATTTAAATTA
32117777 AGGG-TT
1 AGGGTTT
32117783 AGGGTTT
1 AGGGTTT
*
32117790 AGGATTT
1 AGGGTTT
*
32117797 AGGTTTT
1 AGGGTTT
32117804 AGGGTTT
1 AGGGTTT
32117811 AGGGTTT
1 AGGGTTT
32117818 GTCAATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
6 4 0.13
7 27 0.87
ACGTcount: A:0.17, C:0.00, G:0.39, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:32119056 original size:7 final size:7
Alignment explanation
Indices: 32119046--32119071 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32119036 TTATATACAT
32119046 AATACTA
1 AATACTA
32119053 AATACTA
1 AATACTA
32119060 AATACTA
1 AATACTA
32119067 AATAC
1 AATAC
32119072 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:32119277 original size:20 final size:20
Alignment explanation
Indices: 32119240--32119277 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32119230 ATTATTTTTA
*
32119240 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
32119260 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
32119278 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:32120257 original size:11 final size:11
Alignment explanation
Indices: 32120243--32120353 Score: 81
Period size: 11 Copynumber: 10.4 Consensus size: 11
32120233 GAGAAATTTA
32120243 AGAGGAAATTG
1 AGAGGAAATTG
*
32120254 AGAGCAAATTG
1 AGAGGAAATTG
**
32120265 AGATTAAA-T-
1 AGAGGAAATTG
* *
32120274 A-TGG-ATTTG
1 AGAGGAAATTG
32120283 AGA-GAAATTTG
1 AGAGGAAA-TTG
*
32120294 -GAAGGAATTTG
1 AG-AGGAAATTG
*
32120305 AGAGCAAATTG
1 AGAGGAAATTG
*
32120316 AGAGGAAATTA
1 AGAGGAAATTG
32120327 AGAGGAAATTG
1 AGAGGAAATTG
32120338 AGAGGAAATTTG
1 AGAGGAAA-TTG
32120350 AGAG
1 AGAG
32120354 AGGATTAGTT
Statistics
Matches: 76, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 3 0.04
10 3 0.04
11 57 0.75
12 11 0.14
ACGTcount: A:0.44, C:0.02, G:0.31, T:0.23
Consensus pattern (11 bp):
AGAGGAAATTG
Found at i:32120280 original size:51 final size:51
Alignment explanation
Indices: 32120219--32120318 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
32120209 AATTATTTAA
32120219 AAATAGGGATTTAAGAGAAATTTA-AGAGGAAATTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAATTGAGAGCAAATTGAGATT
* * * *
32120270 AAATATGGATTTGAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGA
32120319 GGAAATTAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.27, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAGATT
Found at i:32127407 original size:21 final size:21
Alignment explanation
Indices: 32127383--32127435 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
32127373 CATTGTTTCT
*
32127383 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
32127404 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
32127425 AATCTCACCGC
1 AATCTCACCGC
32127436 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:32131951 original size:23 final size:25
Alignment explanation
Indices: 32131925--32131978 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 25
32131915 AAAAATTCTA
*
32131925 AAAATATAT-AAAAA-AAAGT-AGAT
1 AAAATAT-TCAAAAATAAAGTGAGAG
*
32131948 AAAAAATTCAAAAATAAAGTGAGAG
1 AAAATATTCAAAAATAAAGTGAGAG
32131973 AAAATA
1 AAAATA
32131979 AGGAAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 1 0.04
23 11 0.44
24 5 0.20
25 8 0.32
ACGTcount: A:0.69, C:0.02, G:0.11, T:0.19
Consensus pattern (25 bp):
AAAATATTCAAAAATAAAGTGAGAG
Found at i:32141873 original size:11 final size:11
Alignment explanation
Indices: 32141859--32141921 Score: 67
Period size: 11 Copynumber: 5.8 Consensus size: 11
32141849 TACAATATCT
32141859 AAATAATAATA
1 AAATAATAATA
32141870 AAATAATAA-A
1 AAATAATAATA
*
32141880 AATATAATAACA
1 AA-ATAATAATA
*
32141892 AAATGATAAT-
1 AAATAATAATA
*
32141902 AAATAACAATA
1 AAATAATAATA
*
32141913 AAAAAATAA
1 AAATAATAA
32141922 GGTTAATTCA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
10 11 0.26
11 29 0.67
12 3 0.07
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (11 bp):
AAATAATAATA
Found at i:32146229 original size:3 final size:3
Alignment explanation
Indices: 32146221--32146249 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32146211 TCTTAGACAG
32146221 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32146250 CATGATGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:32154326 original size:24 final size:24
Alignment explanation
Indices: 32154290--32154343 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
32154280 GTGTTGGAAA
32154290 TTCTC-TTCTTTCTTACAT-TGCAGT
1 TTCTCTTTCTTTCTT-CATCTG-AGT
32154314 TTCTCTTTC-TTCTTCATCTGAGT
1 TTCTCTTTCTTTCTTCATCTGAGT
32154337 TT-TCTTT
1 TTCTCTTT
32154344 TAAGTTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 5 0.18
23 8 0.29
24 12 0.43
25 3 0.11
ACGTcount: A:0.09, C:0.24, G:0.07, T:0.59
Consensus pattern (24 bp):
TTCTCTTTCTTTCTTCATCTGAGT
Found at i:32163935 original size:17 final size:17
Alignment explanation
Indices: 32163899--32163934 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
32163889 AATTTGGTTT
*
32163899 AAATAAAAAATTATTTA
1 AAATAAAAAATTATTAA
32163916 AAAT-AAAAATTATTAA
1 AAATAAAAAATTATTAA
32163932 AAA
1 AAA
32163935 AATTATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAAAAAATTATTAA
Found at i:32166239 original size:10 final size:10
Alignment explanation
Indices: 32166220--32166251 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
32166210 ATCATCAACT
*
32166220 AACTAACATC
1 AACTAGCATC
32166230 AACTAGCATC
1 AACTAGCATC
32166240 AACTAGCATC
1 AACTAGCATC
32166250 AA
1 AA
32166252 ATGATACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.47, C:0.28, G:0.06, T:0.19
Consensus pattern (10 bp):
AACTAGCATC
Found at i:32167164 original size:41 final size:41
Alignment explanation
Indices: 32167119--32167228 Score: 141
Period size: 41 Copynumber: 2.7 Consensus size: 41
32167109 CACCGAAACA
*
32167119 AAGCTTGCTAGGCACAAAGTCTGATATAAATCACCGGCATG
1 AAGCTTGCTAGGCACAAAGTCTGATATAAATCACCAGCATG
*
32167160 AAGCTTGCTAGGCACAGAG-CTTGATATAAATCACCAGCATG
1 AAGCTTGCTAGGCACAAAGTC-TGATATAAATCACCAGCATG
* * * * *
32167201 AAGCATACTAGACTCAAAGTCCGATATA
1 AAGCTTGCTAGGCACAAAGTCTGATATA
32167229 TTATCTCAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.02
41 57 0.97
42 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (41 bp):
AAGCTTGCTAGGCACAAAGTCTGATATAAATCACCAGCATG
Found at i:32176946 original size:11 final size:13
Alignment explanation
Indices: 32176922--32176953 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
32176912 TAGTTTATTA
32176922 ATATTTTAATATG
1 ATATTTTAATATG
32176935 AT-TTTTAA-ATG
1 ATATTTTAATATG
32176946 ATATTTTA
1 ATATTTTA
32176954 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:32177200 original size:113 final size:113
Alignment explanation
Indices: 32176997--32177214 Score: 391
Period size: 113 Copynumber: 1.9 Consensus size: 113
32176987 GAAAGGAAAG
32176997 ATGAGGAATTATCATATTCTTCCCCATGCAACCAACGTATGAAGAGGAAAGAAAGAAAGAAACTT
1 ATGAGGAATTATCATATTCTTCCCCATGCAACCAACGTATGAAGAGGAAAGAAAGAAAGAAACTT
32177062 TCTTTTCTTTACAATTTGGTCCTTTTACCAAAAATTCACCGTATATAT
66 TCTTTTCTTTACAATTTGGTCCTTTTACCAAAAATTCACCGTATATAT
* *
32177110 ATGAGGAATTATCATCTTCTTCCCCATGCAACCAATGTATGAAGAGGAAAGAAAGAAAGAAACTT
1 ATGAGGAATTATCATATTCTTCCCCATGCAACCAACGTATGAAGAGGAAAGAAAGAAAGAAACTT
* * *
32177175 TCTTTTTTTTACAATTTGGTGCTTTTATCAAAAATTCACC
66 TCTTTTCTTTACAATTTGGTCCTTTTACCAAAAATTCACC
32177215 ATTTTCACTT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 100 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (113 bp):
ATGAGGAATTATCATATTCTTCCCCATGCAACCAACGTATGAAGAGGAAAGAAAGAAAGAAACTT
TCTTTTCTTTACAATTTGGTCCTTTTACCAAAAATTCACCGTATATAT
Found at i:32179321 original size:30 final size:27
Alignment explanation
Indices: 32179259--32179327 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 27
32179249 TCAATTCAAA
32179259 AAAATCAA-TCAATCAATTCATAATAT
1 AAAATCAATTCAATCAATTCATAATAT
* *
32179285 -ATATCAATTCAATCAATTCCCATCAATTT
1 AAAATCAATTCAATCAATT--CAT-AATAT
32179314 AAAATCAATTCAAT
1 AAAATCAATTCAAT
32179328 ATGAAAATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 6 0.17
26 10 0.29
28 3 0.09
29 4 0.11
30 12 0.34
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (27 bp):
AAAATCAATTCAATCAATTCATAATAT
Found at i:32181713 original size:15 final size:15
Alignment explanation
Indices: 32181693--32181722 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32181683 TTTCTAATAA
32181693 AATCAAGACTCCAAC
1 AATCAAGACTCCAAC
32181708 AATCAAGACTCCAAC
1 AATCAAGACTCCAAC
32181723 TTTCATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.33, G:0.07, T:0.13
Consensus pattern (15 bp):
AATCAAGACTCCAAC
Found at i:32182234 original size:23 final size:23
Alignment explanation
Indices: 32182162--32182229 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
32182152 GTGATAATTC
*
32182162 GTGATTTCAACACTTTGGTGCTA
1 GTGATTTCAACACTTTAGTGCTA
* *
32182185 GTGATTTCAGCACTTCAGTGCTA
1 GTGATTTCAACACTTTAGTGCTA
*
32182208 GTG-TTTCCAACACTTTTGTGCT
1 GTGATTT-CAACACTTTAGTGCT
32182230 CGTGTATCGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 3 0.08
23 35 0.92
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (23 bp):
GTGATTTCAACACTTTAGTGCTA
Found at i:32182747 original size:61 final size:61
Alignment explanation
Indices: 32182673--32182794 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
32182663 GAATATAATG
* *
32182673 AAAGCTCAGAAGTGTTTTTAAGAAAATGTATGAAATAATTAAGCTCTAGGTTGTTTTGATT
1 AAAGCTCACAAGTGTTTATAAGAAAATGTATGAAATAATTAAGCTCTAGGTTGTTTTGATT
32182734 AAAGCTCACAAGTGTTTATAAGAAAATGTATGAAATAATTAAGCTCTAGGTTGTTTTGATT
1 AAAGCTCACAAGTGTTTATAAGAAAATGTATGAAATAATTAAGCTCTAGGTTGTTTTGATT
32182795 GATCTTTAAG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (61 bp):
AAAGCTCACAAGTGTTTATAAGAAAATGTATGAAATAATTAAGCTCTAGGTTGTTTTGATT
Found at i:32187001 original size:24 final size:23
Alignment explanation
Indices: 32186945--32186998 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
32186935 GAGAATGGTT
* *
32186945 TATTAAATAAAAATAAAATAATAT
1 TATTAAATTAAAATAAAATAA-AA
* *
32186969 TTTTTAATTAAAATAAAATAAAA
1 TATTAAATTAAAATAAAATAAAA
32186992 TATTAAA
1 TATTAAA
32186999 ATTTCTTGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
TATTAAATTAAAATAAAATAAAA
Found at i:32187771 original size:11 final size:11
Alignment explanation
Indices: 32187755--32187803 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
32187745 TGCTCCCACT
*
32187755 TTTTGCTATTA
1 TTTTGCTACTA
32187766 TTTTGCTACTA
1 TTTTGCTACTA
** *
32187777 TTTCACTATTA
1 TTTTGCTACTA
*
32187788 TGTTGCTACTA
1 TTTTGCTACTA
32187799 TTTTG
1 TTTTG
32187804 TTGTTAATGT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.18, C:0.14, G:0.10, T:0.57
Consensus pattern (11 bp):
TTTTGCTACTA
Found at i:32187788 original size:22 final size:22
Alignment explanation
Indices: 32187760--32187801 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
32187750 CCACTTTTTG
*
32187760 CTATTATTTTGCTACTATTTCA
1 CTATTATGTTGCTACTATTTCA
32187782 CTATTATGTTGCTACTATTT
1 CTATTATGTTGCTACTATTT
32187802 TGTTGTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.17, G:0.07, T:0.55
Consensus pattern (22 bp):
CTATTATGTTGCTACTATTTCA
Found at i:32192376 original size:22 final size:22
Alignment explanation
Indices: 32192350--32192419 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
32192340 TTGATTTTAT
*
32192350 AAATAAAATATTTAAAAATAAA
1 AAATAAAATAATTAAAAATAAA
* *
32192372 AAATACATTAATTAAAAAT-AA
1 AAATAAAATAATTAAAAATAAA
*
32192393 AAATAAACATTAATTAAAAAGAAA
1 AAATAAA-A-TAATTAAAAATAAA
32192417 AAA
1 AAA
32192420 GCTTGAAACA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 8 0.21
22 16 0.41
23 10 0.26
24 5 0.13
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.24
Consensus pattern (22 bp):
AAATAAAATAATTAAAAATAAA
Found at i:32192395 original size:23 final size:22
Alignment explanation
Indices: 32192361--32192419 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 22
32192351 AATAAAATAT
*
32192361 TTAAAAATAAAAAATACATTAA
1 TTAAAAATAAAAAAAACATTAA
32192383 TTAAAAATAAAAATAAACATTAA
1 TTAAAAATAAAAA-AAACATTAA
*
32192406 TTAAAAAGAAAAAA
1 TTAAAAATAAAAAA
32192420 GCTTGAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 14 0.41
23 20 0.59
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (22 bp):
TTAAAAATAAAAAAAACATTAA
Found at i:32192770 original size:142 final size:133
Alignment explanation
Indices: 32192479--32192821 Score: 384
Period size: 142 Copynumber: 2.5 Consensus size: 133
32192469 ATGGAACCTC
** * **
32192479 AGACTCAAGGATGTAAGCGCAATTATCTAATCATCTAACAAAAGGAGTTAATATGTTAAAAATAT
1 AGACTCAA-GATGTAATTGCAATTATCTAACCATCTAACAAAA-GAACTAATATGTTAAAAATAT
* * *
32192544 TAATTAAAAAAAAGCTTGAAGCAACATGAAATAAAAAATACAAATGTGAGTAGTAGAGGAATTGA
64 TAATTAAAAAAAAGCTTAAAGCAACATGAAATAAAAAATACAAATATGAGTAGAAGAGGAATTGA
*
32192609 ATTTG
129 ATATG
* * * * *
32192614 GGATTCAATGATGTAATTACAACTATCTAACCATCTAACGAAAGAACTAATATGTTAACAAATAT
1 AGACTCAA-GATGTAATTGCAATTATCTAACCATCTAACAAAAGAACTAATATGTTAA-AAATAT
*
32192679 TAATTAAAAATTTAAAAAGCTTAAAGCAACATGAAATAAAAAAAATATAAATATGAGTAGAAGAG
64 TAATT--AAA---AAAAAGCTTAAAGCAACATGAAAT--AAAAAATACAAATATGAGTAGAAGAG
*
32192744 GAATTTAACTAT-
122 GAATTGAA-TATG
** *
32192756 AGACTCAAGAATGTAATTGCAATTATCTAACCATCTAATTAAAGAACTAATATATTAAAAAT-TT
1 AGACTCAAG-ATGTAATTGCAATTATCTAACCATCTAACAAAAGAACTAATATGTTAAAAATATT
32192820 AA
65 AA
32192822 AAAGCTTAAA
Statistics
Matches: 174, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
134 13 0.07
135 45 0.26
137 3 0.02
140 27 0.16
141 5 0.03
142 79 0.45
143 2 0.01
ACGTcount: A:0.50, C:0.10, G:0.13, T:0.28
Consensus pattern (133 bp):
AGACTCAAGATGTAATTGCAATTATCTAACCATCTAACAAAAGAACTAATATGTTAAAAATATTA
ATTAAAAAAAAGCTTAAAGCAACATGAAATAAAAAATACAAATATGAGTAGAAGAGGAATTGAAT
ATG
Found at i:32194403 original size:21 final size:20
Alignment explanation
Indices: 32194374--32194427 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 20
32194364 TGCCTTAAAG
*
32194374 TCTTTTAAAATTTTAAAAAT
1 TCTTTTAAAACTTTAAAAAT
*
32194394 TCTTATTAAACCTTT-AAAA-
1 TCTT-TTAAAACTTTAAAAAT
32194413 --TTTTAAAACTTTAAA
1 TCTTTTAAAACTTTAAA
32194428 TTAAATCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 9 0.31
17 4 0.14
20 8 0.28
21 8 0.28
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.46
Consensus pattern (20 bp):
TCTTTTAAAACTTTAAAAAT
Found at i:32194811 original size:20 final size:22
Alignment explanation
Indices: 32194786--32194826 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
32194776 AAGAGAGAAA
32194786 GAAAAC-TCTT-AAAATTTGGG
1 GAAAACGTCTTGAAAATTTGGG
*
32194806 GAAAACGTTTTGAAAATTTGG
1 GAAAACGTCTTGAAAATTTGG
32194827 ATTTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 3 0.17
22 9 0.50
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (22 bp):
GAAAACGTCTTGAAAATTTGGG
Found at i:32218612 original size:13 final size:13
Alignment explanation
Indices: 32218594--32218637 Score: 88
Period size: 13 Copynumber: 3.4 Consensus size: 13
32218584 GCCTTAAAAA
32218594 TAATTATAATATT
1 TAATTATAATATT
32218607 TAATTATAATATT
1 TAATTATAATATT
32218620 TAATTATAATATT
1 TAATTATAATATT
32218633 TAATT
1 TAATT
32218638 TAGAATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TAATTATAATATT
Found at i:32219724 original size:18 final size:18
Alignment explanation
Indices: 32219680--32219727 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
32219670 TAAATATGAG
* *
32219680 AAATGATGCTCACATTTT
1 AAATGATGTTCACATTTC
32219698 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
32219716 AAATGATGTTCA
1 AAATGATGTTCA
32219728 AATTGATGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:32226436 original size:157 final size:153
Alignment explanation
Indices: 32226167--32226867 Score: 830
Period size: 157 Copynumber: 4.6 Consensus size: 153
32226157 TTTTTTTCAA
* *
32226167 ATTTTATTACTTTA-AAAAATATATTATTTTGTAATTTTATTATTTTATATTATTTTAGTACATT
1 ATTTTATTACTTTATAAAAATATATTATTTTCT-ATTTTATTATTTTACATTATTTTAGTACATT
* * * * * * *
32226231 ATTTTTGAAATGTATTCATTTAGTTTGATTTTTCAATAAATTTAAAAAAAAAACTCTTATTTCGT
65 ATGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTTAAAAAAAAACCCTTATTTCGT
*
32226296 CCCTTTGTTCGTATTTTTTTCCTAG
130 CCATTTGTTCGTA-TTTTTTCCTAG
* *
32226321 ATTTTCTTACTTTCAATAAAAATATATTATTTTCCTATTTTATTATTTTAAATTATTTTAGTACA
1 ATTTTATTACTTT--ATAAAAATATATTATTTT-CTATTTTATTATTTTACATTATTTTAGTACA
* *
32226386 TTATGTTTGAAATGTATTAATTTACTATGTTTTTTAAATAAATTTT--AAAAAAACCCTTATTTC
63 TTATGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTTAAAAAAAAACCCTTATTTC
* *
32226449 GGTCC-TTTGTTCGTATTTTTTTC-GG
128 -GTCCATTTGTTCGTATTTTTTCCTAG
* * *
32226474 ATTTTATTACTTTA-AAAAA-ATATTATTTTCTAATTTTCTAATTTTATATTATTTTAGTACATT
1 ATTTTATTACTTTATAAAAATATATTATTTTCT-ATTTTATTATTTTACATTATTTTAGTACATT
* * * * *
32226537 ATTTTTGAAATGTATTCATTTAGTTTG-ATTTTAAAGTAAA-TTTAAAAAAAAACTCTTATTTCG
65 ATGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAA-TAAATTTTAAAAAAAAACCCTTATTTCG
* *
32226600 GCCATTTGTTCGTATTTTTTCTTAG
129 TCCATTTGTTCGTATTTTTTCCTAG
*
32226625 ATTTTATTACTTTCAATAAAAATATATTATTTTCGCATTTTATTATTTTACATTATTTTAGTACA
1 ATTTTATTACTTT--ATAAAAATATATTATTTTC-TATTTTATTATTTTACATTATTTTAGTACA
* * * **
32226690 TTATATTTGAAATGTATTAATTT-GCTGTATTTTTTAAATAATTTTTTTTAAAAAAACCCTTATT
63 TTATGTTTGAAATGTATTAATTTAG-TGTGTTTTTTAAATAA-ATTTTAAAAAAAAACCCTTATT
* **
32226754 TCGACCATTTGTTCGTATTTTTTCCCGG
126 TCGTCCATTTGTTCGTATTTTTTCCTAG
32226782 ATTTTATTACTTT-TAAAAA-ATA-TA---T-TATTTT-TTA-TTT-CATTATTTTAGTACATTA
1 ATTTTATTACTTTATAAAAATATATTATTTTCTATTTTATTATTTTACATTATTTTAGTACATTA
32226837 TGTTTGAAATGTATTAATTTAGTGTGTTTTT
66 TGTTTGAAATGTATTAATTTAGTGTGTTTTT
32226868 ATTAAAAGTA
Statistics
Matches: 479, Mismatches: 47, Indels: 52
0.83 0.08 0.09
Matches are distributed among these distances:
144 45 0.09
145 4 0.01
146 3 0.01
147 5 0.01
148 12 0.03
149 69 0.14
150 37 0.08
151 15 0.03
152 2 0.00
153 17 0.04
154 31 0.06
155 89 0.19
156 12 0.03
157 137 0.29
158 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.53
Consensus pattern (153 bp):
ATTTTATTACTTTATAAAAATATATTATTTTCTATTTTATTATTTTACATTATTTTAGTACATTA
TGTTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTTAAAAAAAAACCCTTATTTCGTC
CATTTGTTCGTATTTTTTCCTAG
Found at i:32226709 original size:304 final size:304
Alignment explanation
Indices: 32226135--32226868 Score: 1042
Period size: 304 Copynumber: 2.4 Consensus size: 304
32226125 AATATATTCG
* * * **
32226135 TATTTCTACCATTTATTCATATTTTTTTTCAAATTTTATTACTTTAAAAAATATATTATTTTGTA
1 TATTTCGACCATTTGTTCGTA-TTTTTTTCGGATTTTATTACTTTAAAAAA-ATATTATTTT-TA
*
32226200 ATTTTATTATTTTATATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTC
63 ATTTT-TTATTTTATATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGA-TTTTA
* * *
32226265 AATAAATTTAAAAAAAAAACTCTTATTTCGTCCCTTTGTTCGTATTTTTTTCCTAGATTTTCTTA
126 AATAAATTTAAAAAAAAAACTCTTATTTCGGCCATTTGTTCGTATTTTTTTCCTAGATTTTATTA
*
32226330 CTTTCAATAAAAATATATTATTTTCCTATTTTATTATTTTAAATTATTTTAGTACATTATGTTTG
191 CTTTCAATAAAAATATATTATTTTCCTATTTTATTATTTTAAATTATTTTAGTACATTATATTTG
*
32226395 AAATGTATTAATTTACTATGTTTTTTAAATAA-ATTTTAAAAAAACCCT
256 AAATGTATTAATTTACTATATTTTTTAAATAATATTTTAAAAAAACCCT
*
32226443 TATTTCGGTCC-TTTGTTCGTATTTTTTTCGGATTTTATTACTTTAAAAAAATATTATTTTCTAA
1 TATTTC-GACCATTTGTTCGTATTTTTTTCGGATTTTATTACTTTAAAAAAATATTATTTT-TAA
*
32226507 TTTTCTAATTTTATATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTAAA
64 TTTT-TTATTTTATATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTAAA
*
32226572 GTAAATTT-AAAAAAAAACTCTTATTTCGGCCATTTGTTCGTA-TTTTTTCTTAGATTTTATTAC
128 -TAAATTTAAAAAAAAAACTCTTATTTCGGCCATTTGTTCGTATTTTTTTCCTAGATTTTATTAC
*
32226635 TTTCAATAAAAATATATTATTTTCGC-ATTTTATTATTTTACATTATTTTAGTACATTATATTTG
192 TTTCAATAAAAATATATTATTTTC-CTATTTTATTATTTTAAATTATTTTAGTACATTATATTTG
* * *
32226699 AAATGTATTAATTTGCTGTATTTTTTAAATAATTTTTTTTAAAAAAACCCT
256 AAATGTATTAATTTACTATATTTTTTAAATAA--TATTTTAAAAAAACCCT
* *
32226750 TATTTCGACCATTTGTTCGTATTTTTTCCCGGATTTTATTACTTTTAAAAAATA-TA---TT-AT
1 TATTTCGACCATTTGTTCGTATTTTTT-TCGGATTTTATTACTTTAAAAAAATATTATTTTTAAT
* * * * *
32226810 TTTTTA-TTT-CATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTA
65 TTTTTATTTTATATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTA
32226869 TTAAAAGTAA
Statistics
Matches: 389, Mismatches: 29, Indels: 25
0.88 0.07 0.06
Matches are distributed among these distances:
299 45 0.12
300 3 0.01
301 2 0.01
302 5 0.01
303 1 0.00
304 109 0.28
305 39 0.10
306 79 0.20
307 66 0.17
308 38 0.10
309 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.54
Consensus pattern (304 bp):
TATTTCGACCATTTGTTCGTATTTTTTTCGGATTTTATTACTTTAAAAAAATATTATTTTTAATT
TTTTATTTTATATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTAAATAA
ATTTAAAAAAAAAACTCTTATTTCGGCCATTTGTTCGTATTTTTTTCCTAGATTTTATTACTTTC
AATAAAAATATATTATTTTCCTATTTTATTATTTTAAATTATTTTAGTACATTATATTTGAAATG
TATTAATTTACTATATTTTTTAAATAATATTTTAAAAAAACCCT
Found at i:32227291 original size:150 final size:149
Alignment explanation
Indices: 32226872--32227808 Score: 1297
Period size: 150 Copynumber: 6.2 Consensus size: 149
32226862 GTTTTTATTA
* * * ** **
32226872 AAAGTAATAAAATT-CGAGAAAAAATAAGAACAAATGGCTGAAATAAGATTTTTTTTTAAATTTA
1 AAAGTAATAAAATTAGGA-AAAAAATACGAA-AAAAGGCCAAAATAAG-GGTTTTTTTAAATTTA
* *
32226936 TTTAAAAAACACACT-AATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
63 TTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
*
32227000 ATTAGAAAATAATATATTTTTT
128 ATTAGAAAATAATATATATTTT
32227022 AAAAGTAATAAAATCCT-GGAAAAAAATAC-AAACAAAGGGCCGACAGAAATAA-GGTTTTTTT-
1 -AAAGTAATAAAAT--TAGGAAAAAAATACGAAA-AAA-GG-C--CA-AAATAAGGGTTTTTTTA
*
32227083 AATTTATTT-AAAAACACAGTAAATTAATACATTTCAAACGTAATGTACTAAAATAATGTAAAAT
57 AATTTATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAAT
*
32227147 AATAAAATTAGAAAATAGTATAATATTTT
122 AATAAAATTAGAAAATAATAT-ATATTTT
32227176 AAAGTAATAAAATTAGGAAAAAAATACGAAAAAAGGCCAAAATAAGGGTTTTTTTAAATTTATTT
1 AAAGTAATAAAATTAGGAAAAAAATACGAAAAAAGGCCAAAATAAGGGTTTTTTTAAATTTATTT
32227241 AAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATT
66 AAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATT
*
32227306 AGAAAATAGTATAATATTTT
131 AGAAAATAATAT-ATATTTT
32227326 AAAGTAATAAAATTAGGAAAAAAATACGAAAAAAGGCCAAAATAAGGGTTTTTTTAAATTTATTT
1 AAAGTAATAAAATTAGGAAAAAAATACGAAAAAAGGCCAAAATAAGGGTTTTTTTAAATTTATTT
32227391 AAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATT
66 AAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATT
*
32227456 AGAAAATAGTATAATATTTT
131 AGAAAATAATAT-ATATTTT
32227476 AAAGTAATAAAATTAGGAAAAAAATACGAAAAAAGGCCAAAATAAGGGTTTTTTTAAATTTATTT
1 AAAGTAATAAAATTAGGAAAAAAATACGAAAAAAGGCCAAAATAAGGGTTTTTTTAAATTTATTT
32227541 AAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA-T
66 AAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATT
*
32227605 ACAAAAATAATATAT-TTTT
131 A-GAAAATAATATATATTTT
** * * * * *
32227624 ACTGGAAGTAATAAAATCCGGGAAAAAAATGCGAACAAAGGGTCGAAATAA---TTTGTTTTTAA
1 A----AAGTAATAAAAT-TAGGAAAAAAATACGAA-AAAAGGCCAAAATAAGGGTTT-TTTTAAA
* * * *
32227686 TTTATTTAAAAATA-AAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATA
59 TTTATTTAAAAA-ACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATA
*
32227750 ATAAAATTAGAAAATAATATATTTTTT
123 ATAAAATTAGAAAATAATATATATTTT
*
32227777 AAAAGTAATAAAATCTGGGAAAAAAATACGAA
1 -AAAGTAATAAAAT-TAGGAAAAAAATACGAA
32227809 CAAATGGTTG
Statistics
Matches: 730, Mismatches: 29, Indels: 55
0.90 0.04 0.07
Matches are distributed among these distances:
147 6 0.01
148 16 0.02
149 13 0.02
150 400 0.55
151 23 0.03
152 129 0.18
153 111 0.15
154 26 0.04
156 6 0.01
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.30
Consensus pattern (149 bp):
AAAGTAATAAAATTAGGAAAAAAATACGAAAAAAGGCCAAAATAAGGGTTTTTTTAAATTTATTT
AAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATT
AGAAAATAATATATATTTT
Found at i:32228131 original size:16 final size:18
Alignment explanation
Indices: 32228092--32228125 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32228082 TAATTTTATA
32228092 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
32228109 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
32228126 AATTTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:32229834 original size:86 final size:82
Alignment explanation
Indices: 32229622--32229834 Score: 230
Period size: 85 Copynumber: 2.5 Consensus size: 82
32229612 AATTAAGAGG
* * * * **
32229622 AGGGGCTTAATTGTTGTTTTGAAAAATTTTGAAGGTATTTTTGTTGCATTTTGAAAGTTCAAGTA
1 AGGGGCTTAATTCTTTTTTTGAAAAAGTTTG-AGGTGTTTTTAATGCATTTTGAAAGTTCAAGTA
32229687 CCAATTGAGTGAAAAAAA
65 CCAATTGAGTGAAAAAAA
* * * * *
32229705 AGGGGATTAGTTGCTTTTTTTGAAGAAGTTTGAGGGTGTTTTTTAATGCATTTTGAAATTTTAAG
1 AGGGGCTTAATT-CTTTTTTTGAAAAAGTTTGA-GGTG-TTTTTAATGCATTTTGAAAGTTCAAG
*
32229770 TGCTCAATTGAGTGCAAAAAAA
63 TAC-CAATTGAGTG-AAAAAAA
32229792 AGGGGGCTTAATTACTTTTTCTTGAAAAAGTTTGAGG-GTTTTT
1 A-GGGGCTTAATT-CTTTTT-TTGAAAAAGTTTGAGGTGTTTTT
32229835 TTACACATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
83 11 0.10
84 18 0.17
85 24 0.22
86 15 0.14
87 9 0.08
88 17 0.16
89 13 0.12
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.40
Consensus pattern (82 bp):
AGGGGCTTAATTCTTTTTTTGAAAAAGTTTGAGGTGTTTTTAATGCATTTTGAAAGTTCAAGTAC
CAATTGAGTGAAAAAAA
Found at i:32234392 original size:14 final size:15
Alignment explanation
Indices: 32234375--32234415 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
32234365 GGTCATATTG
32234375 CAACAATCAGATT-T
1 CAACAATCAGATTAT
* *
32234389 CAACAATTATATTAT
1 CAACAATCAGATTAT
32234404 -AACAATCAGATT
1 CAACAATCAGATT
32234416 CCAATGATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (15 bp):
CAACAATCAGATTAT
Found at i:32234428 original size:28 final size:28
Alignment explanation
Indices: 32234367--32234429 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
32234357 AAATCAACGG
* *
32234367 TCATATTGCAACAATCAGATTTCAACAA
1 TCATATTACAACAATCAGATTCCAACAA
* * **
32234395 TTATATTATAACAATCAGATTCCAATGA
1 TCATATTACAACAATCAGATTCCAACAA
32234423 TCATATT
1 TCATATT
32234430 TTTGCATTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.35
Consensus pattern (28 bp):
TCATATTACAACAATCAGATTCCAACAA
Found at i:32242882 original size:3 final size:3
Alignment explanation
Indices: 32242874--32243083 Score: 420
Period size: 3 Copynumber: 70.0 Consensus size: 3
32242864 ATAAAAAGTA
32242874 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32242922 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32242970 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32243018 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32243066 AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT
32243084 CAAAAGAATC
Statistics
Matches: 207, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 207 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32249003 original size:18 final size:18
Alignment explanation
Indices: 32248980--32249014 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32248970 ATCTGCTTCT
*
32248980 GCTGCTGCTGTTGTTGCC
1 GCTGCTGCTGCTGTTGCC
*
32248998 GCTGCTGTTGCTGTTGC
1 GCTGCTGCTGCTGTTGC
32249015 TGTGATTGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.26, G:0.34, T:0.40
Consensus pattern (18 bp):
GCTGCTGCTGCTGTTGCC
Found at i:32249114 original size:6 final size:6
Alignment explanation
Indices: 32249060--32249095 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
32249050 AGGAGTGGAA
32249060 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG
1 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG
32249096 GTTGAATTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (6 bp):
TTAGGG
Found at i:32249305 original size:3 final size:3
Alignment explanation
Indices: 32249297--32249331 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
32249287 TAAGAGAAAT
* *
32249297 TGC TGC TGC TGC TGC TGC TGC TGC AGC CGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
32249332 AGGACTCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.03, C:0.34, G:0.34, T:0.29
Consensus pattern (3 bp):
TGC
Found at i:32250858 original size:13 final size:13
Alignment explanation
Indices: 32250840--32250864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32250830 TATAATACTA
32250840 ATTTTAAAAATAT
1 ATTTTAAAAATAT
32250853 ATTTTAAAAATA
1 ATTTTAAAAATA
32250865 AAGGTAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTTAAAAATAT
Found at i:32256073 original size:13 final size:13
Alignment explanation
Indices: 32256055--32256079 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32256045 ACCGTTAATA
32256055 ATTTGATTCAATT
1 ATTTGATTCAATT
32256068 ATTTGATTCAAT
1 ATTTGATTCAAT
32256080 ATCTAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (13 bp):
ATTTGATTCAATT
Found at i:32257806 original size:44 final size:44
Alignment explanation
Indices: 32257696--32257814 Score: 166
Period size: 44 Copynumber: 2.7 Consensus size: 44
32257686 TAAAAGAGAA
* * *
32257696 TACAATATATCACTGCAATTATACACTACACTTTAATTTGATAG
1 TACAATATATCACTGCAATTATACCCTACAATTTAATTTAATAG
*
32257740 TACAATATATCACTGCAGTTATACCCTACAATTTAATTTAATAG
1 TACAATATATCACTGCAATTATACCCTACAATTTAATTTAATAG
* ** *
32257784 TACAATATATCATTAAAATTATACCTTACAA
1 TACAATATATCACTGCAATTATACCCTACAA
32257815 AATATTGAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (44 bp):
TACAATATATCACTGCAATTATACCCTACAATTTAATTTAATAG
Found at i:32261933 original size:26 final size:26
Alignment explanation
Indices: 32261898--32261950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32261888 ATATTTTTTA
* *
32261898 AAAGTCTTAATTTGGTTGTTATAGAT
1 AAAGTCTTAATTTAGTTGGTATAGAT
*
32261924 AAAGTCTTAATTTAGTTGGTATTGAT
1 AAAGTCTTAATTTAGTTGGTATAGAT
32261950 A
1 A
32261951 TTATTATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.19, T:0.45
Consensus pattern (26 bp):
AAAGTCTTAATTTAGTTGGTATAGAT
Found at i:32267612 original size:44 final size:45
Alignment explanation
Indices: 32267547--32267637 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
32267537 ACCTCTATTC
* * *
32267547 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
32267591 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
32267636 CA
1 CA
32267638 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:32267639 original size:16 final size:16
Alignment explanation
Indices: 32267618--32267653 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
32267608 GATTAGCTAT
32267618 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32267634 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32267650 TACA
1 TACA
32267654 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:32269633 original size:15 final size:16
Alignment explanation
Indices: 32269615--32269656 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
32269605 CAACATCTAA
32269615 TTTTAAAATATTAT-T
1 TTTTAAAATATTATAT
*
32269630 TTTTAAAA-ATTTTCAT
1 TTTTAAAATATTAT-AT
32269646 TTTTAAAATAT
1 TTTTAAAATAT
32269657 ACTACATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 4 0.17
15 8 0.35
16 9 0.39
17 2 0.09
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTTAAAATATTATAT
Found at i:32274245 original size:32 final size:32
Alignment explanation
Indices: 32274209--32274273 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
32274199 AAAGTGTTAA
32274209 AGGGGATCTTAGGTAGCCTAATCACCTATACT
1 AGGGGATCTTAGGTAGCCTAATCACCTATACT
32274241 AGGGGATCTTAGGTAGCCTAATCACCTATACT
1 AGGGGATCTTAGGTAGCCTAATCACCTATACT
32274273 A
1 A
32274274 AGTTCCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (32 bp):
AGGGGATCTTAGGTAGCCTAATCACCTATACT
Found at i:32278073 original size:42 final size:42
Alignment explanation
Indices: 32277994--32278080 Score: 106
Period size: 42 Copynumber: 2.0 Consensus size: 42
32277984 CTTCGTTTTC
* * *
32277994 TCGATGCCATAGTCCTATTATGGTCTTGCACATAATCACA-AA
1 TCGATGCCATAGCCCAACTATGGTCTT-CACATAATCACATAA
32278036 TCGATGCCATAGCCCAACTATGGTCTT-ACATGGAATCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTCACAT--AATCACATAA
32278079 TC
1 TC
32278081 ACAGACCGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
40 4 0.10
42 31 0.79
43 4 0.10
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTCACATAATCACATAA
Found at i:32278099 original size:50 final size:50
Alignment explanation
Indices: 32278022--32278381 Score: 352
Period size: 50 Copynumber: 7.3 Consensus size: 50
32278012 TATGGTCTTG
* * *
32278022 CACATAATCACAAATCGATGCCATAGCCCAACTATGGTCTTACATGGAAT
1 CACATAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
* * * * *
32278072 CACATAATCACAGACCGATGTCGTAGCCTAGCTATGGTCTTACATTGAAT
1 CACATAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
* * * * ***
32278122 CACGTAACCATATACCGATGCCATAGCCCAACTATGGTCTTACGCAGAAT
1 CACATAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
* * *
32278172 CACATAATCACATACCGATGCCATAACCCAGCTATGATATTACATGGAAT
1 CACATAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
* * * * ** * *
32278222 TAC---ACCATATAACGATTTCATAGCCCATCTATAGTCTTACATGGAAT
1 CACATAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
* * *
32278269 CACATAATCACATACCGATGTCATAGCCTAGCTATGGTCTTACA-CGAAT
1 CACATAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
* * * * *
32278318 CGCACT-ATCACATATCGGTGCCATATCCCAGCTATGGTCTTACACGGAAT
1 CACA-TAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
**
32278368 CACATTGTCACATA
1 CACATAATCACATA
32278382 TCCACATATT
Statistics
Matches: 247, Mismatches: 57, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
47 36 0.15
49 41 0.17
50 170 0.69
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (50 bp):
CACATAATCACATACCGATGCCATAGCCCAGCTATGGTCTTACATGGAAT
Found at i:32280578 original size:46 final size:46
Alignment explanation
Indices: 32280511--32280603 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
32280501 ATTTGGACAC
32280511 TAAGACTACTTAACACGAACATCTATTTCAAAACTTTATTTTAACA
1 TAAGACTACTTAACACGAACATCTATTTCAAAACTTTATTTTAACA
32280557 TAAGACTACTTAACACGAACATCTATTTCAAAACTTTATTTTAACA
1 TAAGACTACTTAACACGAACATCTATTTCAAAACTTTATTTTAACA
32280603 T
1 T
32280604 GAATAGACAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.35
Consensus pattern (46 bp):
TAAGACTACTTAACACGAACATCTATTTCAAAACTTTATTTTAACA
Found at i:32282539 original size:441 final size:442
Alignment explanation
Indices: 32281704--32282588 Score: 1754
Period size: 441 Copynumber: 2.0 Consensus size: 442
32281694 TTCTTCTAAA
32281704 ATTTAATAAAATAAAATAAATAAAAAAATTCAATTTAATATAATATAATAATAGTCGATGAAAAC
1 ATTTAATAAAATAAAATAAATAAAAAAATTCAATTTAATATAATATAATAATAGTCGATGAAAAC
32281769 TAAATATTATTATAACTAAAAAAAAAAATCTATCCATCATAGTTATTCACTTGATCTTGATAAAA
66 TAAATATTATTATAACTAAAAAAAAAAATCTATCCATCATAGTTATTCACTTGATCTTGATAAAA
32281834 TTACTTTTCATGTCCTCACGCATTTTACCACTTATTCAATTTAATTCTTTTATACTTTTAATTTC
131 TTACTTTTCATGTCCTCACGCATTTTACCACTTATTCAATTTAATTCTTTTATACTTTTAATTTC
32281899 TCTCCTTGACCCCAGCACTTTGGTAAATCTACAGTTTAGTCTATACCTCAGATTAATATTTTTCA
196 TCTCCTTGACCCCAGCACTTTGGTAAATCTACAGTTTAGTCTATACCTCAGATTAATATTTTTCA
32281964 ATACATCAGTATTTTAAATTTTCTCTAGTCTCCTACTATCTTCTCCACTAACACTTATAAATAAC
261 ATACATCAGTATTTTAAATTTTCTCTAGTCTCCTACTATCTTCTCCACTAACACTTATAAATAAC
32282029 ATTTTATTTATTCTGACAAATTCGACTCATAATTGCTCAAAATAATATTGTTACAATCACAAGCT
326 ATTTTATTTATTCTGACAAATTCGACTCATAATTGCTCAAAATAATATTGTTACAATCACAAGCT
32282094 TTTCGAGGATGTTACAAAGTTTAACTTTTTTATACAATGTTTAAGGTTGGAG
391 TTTCGAGGATGTTACAAAGTTTAACTTTTTTATACAATGTTTAAGGTTGGAG
*
32282146 ATTTAATAAAAT-AAATAAATAAAACAATTCAATTTAATATAATATAATAATAGTCGATGAAAAC
1 ATTTAATAAAATAAAATAAATAAAAAAATTCAATTTAATATAATATAATAATAGTCGATGAAAAC
32282210 TAAATATTATTATAACTAAAAAAAAAAATCTATCCATCATAGTTATTCACTTGATCTTGATAAAA
66 TAAATATTATTATAACTAAAAAAAAAAATCTATCCATCATAGTTATTCACTTGATCTTGATAAAA
32282275 TTACTTTTCATGTCCTCACGCATTTTACCACTTATTCAATTTAATTCTTTTATACTTTTAATTTC
131 TTACTTTTCATGTCCTCACGCATTTTACCACTTATTCAATTTAATTCTTTTATACTTTTAATTTC
32282340 TCTCCTTGACCCCAGCACTTTGGTAAATCTACAGTTTAGTCTATACCTCAGATTAATATTTTTCA
196 TCTCCTTGACCCCAGCACTTTGGTAAATCTACAGTTTAGTCTATACCTCAGATTAATATTTTTCA
32282405 ATACATCAGTATTTTAAATTTTCTCTAGTCTCCTACTATCTTCTCCACTAACACTTATAAATAAC
261 ATACATCAGTATTTTAAATTTTCTCTAGTCTCCTACTATCTTCTCCACTAACACTTATAAATAAC
32282470 ATTTTATTTATTCTGACAAATTCGACTCATAATTGCTCAAAATAATATTGTTACAATCACAAGCT
326 ATTTTATTTATTCTGACAAATTCGACTCATAATTGCTCAAAATAATATTGTTACAATCACAAGCT
32282535 TTTCGAGGATGTTACAAAGTTTAACTTTTTTATACAATGTTTAAGGTTGGAG
391 TTTCGAGGATGTTACAAAGTTTAACTTTTTTATACAATGTTTAAGGTTGGAG
32282587 AT
1 AT
32282589 GGGATCACAT
Statistics
Matches: 442, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
441 430 0.97
442 12 0.03
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.40
Consensus pattern (442 bp):
ATTTAATAAAATAAAATAAATAAAAAAATTCAATTTAATATAATATAATAATAGTCGATGAAAAC
TAAATATTATTATAACTAAAAAAAAAAATCTATCCATCATAGTTATTCACTTGATCTTGATAAAA
TTACTTTTCATGTCCTCACGCATTTTACCACTTATTCAATTTAATTCTTTTATACTTTTAATTTC
TCTCCTTGACCCCAGCACTTTGGTAAATCTACAGTTTAGTCTATACCTCAGATTAATATTTTTCA
ATACATCAGTATTTTAAATTTTCTCTAGTCTCCTACTATCTTCTCCACTAACACTTATAAATAAC
ATTTTATTTATTCTGACAAATTCGACTCATAATTGCTCAAAATAATATTGTTACAATCACAAGCT
TTTCGAGGATGTTACAAAGTTTAACTTTTTTATACAATGTTTAAGGTTGGAG
Found at i:32290800 original size:7 final size:7
Alignment explanation
Indices: 32290788--32290812 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32290778 AGTCGATTGA
32290788 TATTTAG
1 TATTTAG
32290795 TATTTAG
1 TATTTAG
32290802 TATTTAG
1 TATTTAG
32290809 TATT
1 TATT
32290813 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:32291187 original size:110 final size:111
Alignment explanation
Indices: 32290982--32291201 Score: 363
Period size: 110 Copynumber: 2.0 Consensus size: 111
32290972 CAGACAGACA
32290982 GAGTGCTAAGACAGTTTGGATGTAGACAACCGATTCCCGCGGACCCTGAGGAGTTTGACGAGCAC
1 GAGTGCTAAGACAGTTTGGATGTAGACAACCGATTCCCGCGGACCCTGAGGAGTTTGACGAGCAC
*
32291047 CACAAAATCGACCTTCGGCAATTAGGTACGGATTGGACTAGATACC
66 CACAAAATCGACCTTCGGCAATTAGATACGGATTGGACTAGATACC
* * *
32291093 GAGTGCTAA-ACAGTTTGGATGTAGACAACCGATTCCCGTGGACCCTGAGGTGTTTGACGATCAC
1 GAGTGCTAAGACAGTTTGGATGTAGACAACCGATTCCCGCGGACCCTGAGGAGTTTGACGAGCAC
* *
32291157 CACAAAATTGACCTTCGGCTATT-GAATACGGATTGGACTAGATAC
66 CACAAAATCGACCTTCGGCAATTAG-ATACGGATTGGACTAGATAC
32291202 TGGTCCGAGT
Statistics
Matches: 102, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
109 1 0.01
110 92 0.90
111 9 0.09
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (111 bp):
GAGTGCTAAGACAGTTTGGATGTAGACAACCGATTCCCGCGGACCCTGAGGAGTTTGACGAGCAC
CACAAAATCGACCTTCGGCAATTAGATACGGATTGGACTAGATACC
Found at i:32291600 original size:18 final size:18
Alignment explanation
Indices: 32291573--32291630 Score: 107
Period size: 18 Copynumber: 3.2 Consensus size: 18
32291563 CAGGTGCGTT
*
32291573 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
32291591 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
32291609 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
32291627 TCCT
1 TCCT
32291631 TTTCAGAGTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:32291910 original size:21 final size:21
Alignment explanation
Indices: 32291886--32291934 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
32291876 AGATGCCGTA
32291886 CCGGAAGAACCAA-AATCC-CCG
1 CCGGAAGAA-CAACAA-CCGCCG
*
32291907 CCGGAGGAACAACAACCGCCG
1 CCGGAAGAACAACAACCGCCG
32291928 CCGGAAG
1 CCGGAAG
32291935 CTAGAGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.35, C:0.37, G:0.27, T:0.02
Consensus pattern (21 bp):
CCGGAAGAACAACAACCGCCG
Found at i:32292117 original size:26 final size:25
Alignment explanation
Indices: 32292059--32292182 Score: 116
Period size: 25 Copynumber: 5.1 Consensus size: 25
32292049 TATTTTAAAG
* * *
32292059 TTTATTTCACGTAATAAAATAGAAG
1 TTTATTTGATGTAATAAAATAGAAA
32292084 TTTATTTGATGTAATAAAAATAGAAAA
1 TTTATTTGATGTAAT-AAAATAG-AAA
** * *
32292111 TTT-TTTGA-GT--T-ATTTTGATA
1 TTTATTTGATGTAATAAAATAGAAA
*
32292131 -TTATTTGATGTAATAAAATAGAAG
1 TTTATTTGATGTAATAAAATAGAAA
32292155 TTTATTTGATGTAATAAAATAGAAA
1 TTTATTTGATGTAATAAAATAGAAA
32292180 TTT
1 TTT
32292183 TTGAATATTT
Statistics
Matches: 78, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.03
20 7 0.09
21 5 0.06
23 2 0.03
24 4 0.05
25 41 0.53
26 12 0.15
27 5 0.06
ACGTcount: A:0.42, C:0.02, G:0.13, T:0.44
Consensus pattern (25 bp):
TTTATTTGATGTAATAAAATAGAAA
Found at i:32292135 original size:71 final size:68
Alignment explanation
Indices: 32292037--32292200 Score: 215
Period size: 71 Copynumber: 2.4 Consensus size: 68
32292027 TTATTTGTAC
* *
32292037 AAATATTTTGAGTATTTTAAAGT-TTATTTCACGTAATAAAATAGAAGTTTATTTGATGTAATAA
1 AAAT-TTTTGAATATTTTGAA-TATTATTTCACGTAATAAAATAGAAGTTTATTTGATGTAAT-A
32292101 AAATAG
63 AAATAG
* * *
32292107 AAAATTTTTTGAGTTATTTTG-ATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATA
1 -AAA-TTTTTGA-ATATTTTGAATATTATTTCACGTAATAAAATAGAAGTTTATTTGATGTAATA
32292171 AAATAG
63 AAATAG
32292177 AAATTTTTGAATATTTTGAATATT
1 AAATTTTTGAATATTTTGAATATT
32292201 TTGAATATTT
Statistics
Matches: 84, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
67 7 0.08
68 12 0.14
69 3 0.04
70 8 0.10
71 47 0.56
72 7 0.08
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.45
Consensus pattern (68 bp):
AAATTTTTGAATATTTTGAATATTATTTCACGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
TAG
Found at i:32292195 original size:9 final size:9
Alignment explanation
Indices: 32292181--32292213 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
32292171 AAATAGAAAT
32292181 TTTTGAATA
1 TTTTGAATA
32292190 TTTTGAATA
1 TTTTGAATA
32292199 TTTTGAATA
1 TTTTGAATA
32292208 TTTTGA
1 TTTTGA
32292214 GAATTCTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (9 bp):
TTTTGAATA
Found at i:32292270 original size:23 final size:23
Alignment explanation
Indices: 32292243--32292912 Score: 810
Period size: 23 Copynumber: 28.6 Consensus size: 23
32292233 AAATGGAAAA
32292243 GAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
* **
32292266 AAAAACCCTAACCTAATTAAAAA
1 GAAAACCCTAACCTAATTAAATT
32292289 GAAAACCCTAACCTAATTAAACCTT
1 GAAAACCCTAACCTAATTAAA--TT
32292314 --AAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
32292335 GAAAACCCTAACCTAATT-AATT
1 GAAAACCCTAACCTAATTAAATT
32292357 GAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
*
32292380 GAAAACCCTAACCTAGTTAAATT
1 GAAAACCCTAACCTAATTAAATT
32292403 GAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
* *
32292426 GAAAACTCC-AACTTAGTTAAATT
1 GAAAAC-CCTAACCTAATTAAATT
32292449 GAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
*
32292472 GAAAAAAAAAACCTAACCTAATTAAATT
1 G-----AAAACCCTAACCTAATTAAATT
32292500 GAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
*
32292523 GAAAACTCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
*
32292546 TAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
* *
32292569 AAAAACCCTAACCTACTTAAATT
1 GAAAACCCTAACCTAATTAAATT
*
32292592 GAAAACCCTAACCTAGTTAAATT
1 GAAAACCCTAACCTAATTAAATT
32292615 GAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
** *
32292638 GAAAAGAAAACATTAACGTAATTAAATT
1 -----GAAAACCCTAACCTAATTAAATT
*
32292666 GAAAACCCTAACCTAGTTAAATT
1 GAAAACCCTAACCTAATTAAATT
*
32292689 GAAAACTCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
*** **
32292712 GAAAA-GAAAACCCTAACCAAATT
1 GAAAACCCTAA-CCTAATTAAATT
*
32292735 AAAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
32292758 GAAAAAAAACCCTAACCTAATTAAATT
1 G----AAAACCCTAACCTAATTAAATT
***
32292785 GAAAAGAATAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
* * **
32292808 AAAAACACTAACCTAATTAAAAA
1 GAAAACCCTAACCTAATTAAATT
**
32292831 GAAAACCCTAACCTAATTAAACC
1 GAAAACCCTAACCTAATTAAATT
**
32292854 CTAAACCCTAACCTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
* *
32292877 AAAAACCCTAACTTAATTAAATT
1 GAAAACCCTAACCTAATTAAATT
*
32292900 GAAAACTCTAACC
1 GAAAACCCTAACC
32292913 CTTAACATTC
Statistics
Matches: 559, Mismatches: 65, Indels: 46
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.00
22 26 0.05
23 462 0.83
24 4 0.01
27 23 0.04
28 42 0.08
ACGTcount: A:0.50, C:0.21, G:0.04, T:0.25
Consensus pattern (23 bp):
GAAAACCCTAACCTAATTAAATT
Found at i:32292741 original size:18 final size:18
Alignment explanation
Indices: 32292718--32292755 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
32292708 AATTGAAAAG
32292718 AAAACCCTAACCAAATTA
1 AAAACCCTAACCAAATTA
*
32292736 AAAACCCTAACCTAATTA
1 AAAACCCTAACCAAATTA
32292754 AA
1 AA
32292756 TTGAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAACCCTAACCAAATTA
Found at i:32293116 original size:115 final size:115
Alignment explanation
Indices: 32292917--32293134 Score: 350
Period size: 115 Copynumber: 1.9 Consensus size: 115
32292907 CTAACCCTTA
* *
32292917 ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTTCCTGGTACTAACAATTAATAATTTTATA
1 ACATTCACATAATGTTAGATTTGGAAAAA-GTATTTTCCTGGTACTAACAAATAATAATTTTATA
* *
32292982 TAATTTGATAATTTTACTAACAATTAATACAATTTATCGGATAATAATTTT
65 CAAATTGATAATTTTACTAACAATTAATACAATTTATCGGATAATAATTTT
32293033 ACATTCACATAATGTTAGATTTGGAAAAA-TATTTTCACTGGTACTAACAAATAATAATTTTATA
1 ACATTCACATAATGTTAGATTTGGAAAAAGTATTTTC-CTGGTACTAACAAATAATAATTTTATA
*
32293097 CAAATTGA-AATTTTTACTAACCATTAATACAATTTATC
65 CAAATTGATAA-TTTTACTAACAATTAATACAATTTATC
32293135 AATTAATAAT
Statistics
Matches: 95, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
114 8 0.08
115 58 0.61
116 29 0.31
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (115 bp):
ACATTCACATAATGTTAGATTTGGAAAAAGTATTTTCCTGGTACTAACAAATAATAATTTTATAC
AAATTGATAATTTTACTAACAATTAATACAATTTATCGGATAATAATTTT
Found at i:32296214 original size:124 final size:124
Alignment explanation
Indices: 32295988--32296396 Score: 584
Period size: 124 Copynumber: 3.3 Consensus size: 124
32295978 GCAATTTGAC
* * * * * *
32295988 ACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCAT
1 ACTATTTGCTCAGAAACGTCAAAAAA-AATTATTTCATCCATGACCTACTGTAGCAAAAGCGCGT
* * * * * * *
32296053 CCACGAAGGCACGATTTCACAATTTCTTCTCATATAGCATCCTGGTATAAGCGATTTTAT
65 CCACGAGGGCGCGATTTCACAAATTATTCTCAAATAGCATCCTGCTAGAAGCGATTTTAT
* *
32296113 ACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGACCTATTGTAGCAAAAGCGTGTC
1 ACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGACCTACTGTAGCAAAAGCGCGTC
* *
32296178 CACGAGGGCGCGATTTTACAAATTATTCTCAAATAGCATCCTGTTAGAAGCGATTTTAT
66 CACGAGGGCGCGATTTCACAAATTATTCTCAAATAGCATCCTGCTAGAAGCGATTTTAT
* *
32296237 ACTATTTGCTCAGAAACGTTAAAAAAATTTATTTCATCCATGACCTACTGTAGCAAAAGCGCGTC
1 ACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGACCTACTGTAGCAAAAGCGCGTC
* *
32296302 CACGAGGGCGCGATTTCACAAATTTTTCTCAAATAGCATCTTGCTAGAAGCGATTTTAT
66 CACGAGGGCGCGATTTCACAAATTATTCTCAAATAGCATCCTGCTAGAAGCGATTTTAT
* **
32296361 ACTATTTGATCAGAAACGTCAACTCAAAATTATTTC
1 ACTATTTGCTCAGAAACGTCAA-AAAAAATTATTTC
32296397 TTGCTGGACC
Statistics
Matches: 254, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
124 218 0.86
125 36 0.14
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (124 bp):
ACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGACCTACTGTAGCAAAAGCGCGTC
CACGAGGGCGCGATTTCACAAATTATTCTCAAATAGCATCCTGCTAGAAGCGATTTTAT
Done.