Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 83 of 135
Found at i:32310927 original size:16 final size:17
Alignment explanation
Indices: 32310906--32310959 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 17
32310896 AAAAATTATC
*
32310906 TTTTCTA-TCTTTCCAT
1 TTTTCTACTCTTTCCAA
*
32310922 TTTTCTACCCTTT-CAA
1 TTTTCTACTCTTTCCAA
*
32310938 TTTTC-ATTCTTTCCAA
1 TTTTCTACTCTTTCCAA
32310954 TTTTCT
1 TTTTCT
32310960 TTCCACTCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 5 0.16
16 22 0.71
17 4 0.13
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTCTACTCTTTCCAA
Found at i:32321194 original size:114 final size:114
Alignment explanation
Indices: 32321027--32321816 Score: 1196
Period size: 114 Copynumber: 7.0 Consensus size: 114
32321017 AAAACAGGCT
**** * *
32321027 TTTAGCGGCGTTTTCCAAAAAGCGCCGC--AAAAAACTAAGCCCAACGGCGCCGTTCTCAGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
** *
32321090 TTCAAGGATTTAGCGGCGTTTTTAAGAAAGCGCGGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * *
32321139 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACTGCGCCGTTTTGTAAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
32321204 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * *
32321253 TTTAGTGGCGTTTTTGGAAAAGCGCCGC-AAAAAAACTATGCCCAACGGCGCCG-TTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
* *
32321316 TTCGGGGATTTAGAGGCGCTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * *
32321365 TTTAGCGGCGTTCTTGGGAAAGCGCCGC-AAAAAAACTAAGCCCAACGACGCCATTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
* *
32321429 TTTGGGGATTTAGCGGCGTTTTTAAGAAAGTGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * * ** * *
32321478 TTTAGCGGCATTTTTGGGGAAGCTCCGCAAAAAAAACTAAGCCCAACGATGCCATTTTCTGAACT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
* *
32321543 TTCAGGGATTTAGCGGCGTTTTTATGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* *
32321592 TTTAGCGGCGTTTTTGGGGAAGCGCCGCAAAAAAAACTAAGCCCAACGGCACCGTTTTCAT-AGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTC-TGAGC
*
32321656 TTTCGAGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
65 TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
*
32321706 TTTAGCGGCGTTTTTGGGAATGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
* *
32321771 CTCGGGGATTTAGCGGCGTTTGTAAGAAAGCGCCGCTAATGCTCAG
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAG
32321817 AGATTTAAAA
Statistics
Matches: 616, Mismatches: 56, Indels: 10
0.90 0.08 0.01
Matches are distributed among these distances:
112 126 0.20
113 103 0.17
114 386 0.63
115 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:32322106 original size:22 final size:21
Alignment explanation
Indices: 32322081--32322130 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
32322071 GTGCTATGCT
*
32322081 TTAGGTGTTAGGGGATTTAGGG
1 TTAGGGGTTA-GGGATTTAGGG
*
32322103 TTAGGGGTTAGGGATTTGGGG
1 TTAGGGGTTAGGGATTTAGGG
32322124 TTTAGGG
1 -TTAGGG
32322131 TTTCAACAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (21 bp):
TTAGGGGTTAGGGATTTAGGG
Found at i:32322107 original size:15 final size:14
Alignment explanation
Indices: 32322080--32322132 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 14
32322070 AGTGCTATGC
32322080 TTTAGGTGTTAGGGG
1 TTTAGG-GTTAGGGG
32322095 ATTTAGGGTTAGGGG
1 -TTTAGGGTTAGGGG
*
32322110 -TTAGGGATTTGGGG
1 TTTAGGG-TTAGGGG
32322124 TTTAGGGTT
1 TTTAGGGTT
32322133 TCAACAGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
13 6 0.18
14 8 0.24
15 14 0.41
16 6 0.18
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.40
Consensus pattern (14 bp):
TTTAGGGTTAGGGG
Found at i:32322685 original size:43 final size:43
Alignment explanation
Indices: 32322624--32322779 Score: 231
Period size: 43 Copynumber: 3.6 Consensus size: 43
32322614 ACGTAAAATT
*
32322624 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGTAGAAGTGCCGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGC
* *
32322667 TAAAGGTCTTGTTCTTTAGCGGTGTTTGTGGTGGAAGCGCCGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGC
** * * *
32322710 TAAAGGTCACGATCTTTAACGACGTTTGTGGTAGAAGCGCCGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGC
*
32322753 TAAATGTCTTGTTCTTTAGCGGCGTTT
1 TAAAGGTCTTGTTCTTTAGCGGCGTTT
32322780 ATTTTTAAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.18, C:0.17, G:0.30, T:0.35
Consensus pattern (43 bp):
TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGC
Found at i:32322873 original size:22 final size:22
Alignment explanation
Indices: 32322843--32322884 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32322833 CAGCGCTTCC
* *
32322843 AAAAGCGCCGCTAAAGGCCTAA
1 AAAAACGCCGCTAAAAGCCTAA
32322865 AAAAACGCCGCTAAAAGCCT
1 AAAAACGCCGCTAAAAGCCT
32322885 GTTTTGGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.29, G:0.19, T:0.10
Consensus pattern (22 bp):
AAAAACGCCGCTAAAAGCCTAA
Found at i:32338305 original size:74 final size:70
Alignment explanation
Indices: 32338203--32338346 Score: 211
Period size: 74 Copynumber: 2.0 Consensus size: 70
32338193 TTAATTTGTG
*
32338203 TTTTTGAATTGTTTATTATTTATTTTATAATATTTT-AATTGTTTTATAATATTTGTTTATTCAA
1 TTTTTCAATTGTTTATTATTTATTTTATAATATTTTAAATT-TTTTATAATA-TT-TTTATTCAA
32338267 ACATGTTTT
63 ACAT-TTTT
32338276 TTTTTCAATTTGTTTATTA-TTATTTTTATAATATTTTAAATTTTTTATAATATTTTTATTCAAA
1 TTTTTCAA-TTGTTTATTATTTA-TTTTATAATATTTTAAATTTTTTATAATATTTTTATTCAAA
32338340 CATTTTT
64 CATTTTT
32338347 AAAATATATA
Statistics
Matches: 67, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
71 4 0.06
72 13 0.19
73 12 0.18
74 34 0.51
75 4 0.06
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.64
Consensus pattern (70 bp):
TTTTTCAATTGTTTATTATTTATTTTATAATATTTTAAATTTTTTATAATATTTTTATTCAAACA
TTTTT
Found at i:32338312 original size:11 final size:11
Alignment explanation
Indices: 32338296--32338334 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
32338286 TGTTTATTAT
32338296 TATTTTTATAA
1 TATTTTTATAA
32338307 TA-TTTTA-AA
1 TATTTTTATAA
32338316 T-TTTTTATAA
1 TATTTTTATAA
32338326 TATTTTTAT
1 TATTTTTAT
32338335 TCAAACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 8 0.32
10 8 0.32
11 9 0.36
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTTTTATAA
Found at i:32338331 original size:10 final size:10
Alignment explanation
Indices: 32338299--32338331 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32338289 TTATTATTAT
32338299 TTTTATAATA
1 TTTTATAATA
*
32338309 TTTTA-AATT
1 TTTTATAATA
32338318 TTTTATAATA
1 TTTTATAATA
32338328 TTTT
1 TTTT
32338332 TATTCAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTATAATA
Found at i:32338553 original size:13 final size:13
Alignment explanation
Indices: 32338535--32338560 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32338525 ATATTATAAA
32338535 ACATTTAAAATAT
1 ACATTTAAAATAT
32338548 ACATTTAAAATAT
1 ACATTTAAAATAT
32338561 TATAATACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:32339223 original size:22 final size:22
Alignment explanation
Indices: 32339198--32339242 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32339188 AAAATTTAAA
32339198 AAAGAAAATATAAAAATATTTT
1 AAAGAAAATATAAAAATATTTT
* * * *
32339220 AAAGATATTATGAATATATTTT
1 AAAGAAAATATAAAAATATTTT
32339242 A
1 A
32339243 TAATTTTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (22 bp):
AAAGAAAATATAAAAATATTTT
Found at i:32339896 original size:43 final size:43
Alignment explanation
Indices: 32339845--32340114 Score: 233
Period size: 43 Copynumber: 6.3 Consensus size: 43
32339835 TTTTAGAAAT
*
32339845 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAA
* * *
32339888 AAATGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCT-CCAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAA
* * * * *
32339930 CAAACGCCGCTAAAGACCATGGCCTTTAGCGACGCTTTTACGAG
1 -AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAA
* * * ** *
32339974 AAACGCCGCTATAGATCAGGATATTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAA
* * * * * * *
32340017 AAACGCTGCTATAG-CTAAAGACCTTTAGCAGCGCTTTTACCAC
1 AAACGCCGCTAAAGAC-CATGACCTTTAGCGGCGCTTTTCCCAA
* * * * *
32340060 AAACGCCGCTATAGAACA-AACCTTTAGCGACGCTTCTT-GCAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTT-TTCCCAA
*
32340102 AAACGCCACTAAA
1 AAACGCCGCTAAA
32340115 AACATAACAT
Statistics
Matches: 183, Mismatches: 39, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
42 31 0.17
43 150 0.82
44 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAA
Found at i:32339943 original size:86 final size:85
Alignment explanation
Indices: 32339845--32340114 Score: 265
Period size: 86 Copynumber: 3.2 Consensus size: 85
32339835 TTTTAGAAAT
* * * * **
32339845 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCAAAAATGCCGCTAAAGGCCATGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCAAAAACGCCGCTATAGAACA-GAC
32339910 CTTTAGCGGCGCTTCTCCAAC
65 CTTTAGCGGCGCTTCTCCAAC
* * * * * *
32339931 AAACGCCGCTAAAGACCATGGCCTTTAGCGACGCTTTTACGAGAAACGCCGCTATAGATCAGGAT
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCAAAAACGCCGCTATAGAACA-GAC
* * *
32339996 ATTTAGCGGCGCTTTTCCCAC
65 CTTTAGCGGCGCTTCTCCAAC
* * * * * * *
32340017 AAACGCTGCTATAG-CTAAAGACCTTTAGCAGCGCTTTTACCACAAACGCCGCTATAGAACAAAC
1 AAACGCCGCTAAAGAC-CATGACCTTTAGCGGCGCTTTTACCAAAAACGCCGCTATAGAACAGAC
* *
32340081 CTTTAGCGACGCTTCTTGCAA-
65 CTTTAGCGGCGCTTC-TCCAAC
*
32340102 AAACGCCACTAAA
1 AAACGCCGCTAAA
32340115 AACATAACAT
Statistics
Matches: 147, Mismatches: 35, Indels: 5
0.79 0.19 0.03
Matches are distributed among these distances:
85 24 0.16
86 123 0.84
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (85 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCAAAAACGCCGCTATAGAACAGACC
TTTAGCGGCGCTTCTCCAAC
Found at i:32340040 original size:129 final size:128
Alignment explanation
Indices: 32339845--32340094 Score: 308
Period size: 129 Copynumber: 1.9 Consensus size: 128
32339835 TTTTAGAAAT
* * * *
32339845 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCAAAAATGCCGCTAAAGGCCATGAC
1 AAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGGCAAAGAC
* * **
32339910 CTTTAGCGGCGCTTCT-CCAACAAACGCCGCTAAAGACCATGGCCTTTAGCGACGCTTTTACGAG
66 CTTTAGCAGCGCTTCTACC-ACAAACGCCGCTAAAGAACA-AACCTTTAGCGACGCTTTTACGAG
* * * * *
32339974 AAACGCCGCTATAGATCAGGA-TATTTAGCGGCGCTTTTCCCACAAACGCTGCTATA-GCTAAAG
1 AAACGCCGCTAAAGACCAGGACT-TTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGGC-AAAG
* *
32340037 ACCTTTAGCAGCGCTTTTACCACAAACGCCGCTATAGAACAAACCTTTAGCGACGCTT
64 ACCTTTAGCAGCGCTTCTACCACAAACGCCGCTAAAGAACAAACCTTTAGCGACGCTT
32340095 CTTGCAAAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
128 18 0.17
129 83 0.81
130 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (128 bp):
AAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGGCAAAGAC
CTTTAGCAGCGCTTCTACCACAAACGCCGCTAAAGAACAAACCTTTAGCGACGCTTTTACGAG
Found at i:32345603 original size:21 final size:22
Alignment explanation
Indices: 32345570--32345610 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
32345560 TCTGAAATCC
32345570 TAAACCCCTAACCCCTAAACTT
1 TAAACCCCTAACCCCTAAACTT
* *
32345592 TAAATCCC-AACCCTTAAAC
1 TAAACCCCTAACCCCTAAAC
32345611 AATAAACCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (22 bp):
TAAACCCCTAACCCCTAAACTT
Found at i:32345839 original size:16 final size:17
Alignment explanation
Indices: 32345803--32345844 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
32345793 CACTATAATC
32345803 ATTATTTTAATATATTAA
1 ATTA-TTTAATATATTAA
32345821 ATTATTTAATATA-TAA
1 ATTATTTAATATATTAA
32345837 ATTATTTA
1 ATTATTTA
32345845 TAAATAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 11 0.46
17 9 0.38
18 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTATTTAATATATTAA
Found at i:32346006 original size:21 final size:21
Alignment explanation
Indices: 32345977--32346016 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32345967 TTAAATCTTA
* *
32345977 AACCTCTAACTCTTAACCCTC
1 AACCCCTAACCCTTAACCCTC
32345998 AACCCCTAACCCTTAACCC
1 AACCCCTAACCCTTAACCC
32346017 CTAAACTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.47, G:0.00, T:0.23
Consensus pattern (21 bp):
AACCCCTAACCCTTAACCCTC
Found at i:32346007 original size:14 final size:14
Alignment explanation
Indices: 32345990--32346020 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32345980 CTCTAACTCT
32345990 TAACCCTCAACCCC
1 TAACCCTCAACCCC
*
32346004 TAACCCTTAACCCC
1 TAACCCTCAACCCC
32346018 TAA
1 TAA
32346021 ACTTTAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.19
Consensus pattern (14 bp):
TAACCCTCAACCCC
Found at i:32346057 original size:21 final size:20
Alignment explanation
Indices: 32346003--32346086 Score: 73
Period size: 21 Copynumber: 4.1 Consensus size: 20
32345993 CCCTCAACCC
*
32346003 CTAACCCTTAACCCCTAAACT
1 CTAACCCTTAAACCCTAAA-T
* * *
32346024 TTAAACCC--CAACCCTTAAT
1 CT-AACCCTTAAACCCTAAAT
*
32346043 CTATACCCTTAAACCATAAAT
1 CTA-ACCCTTAAACCCTAAAT
32346064 CGTAACCCTTAAACCCTAAAT
1 C-TAACCCTTAAACCCTAAAT
32346085 CT
1 CT
32346087 TAAAGCATAA
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
18 1 0.02
19 6 0.12
20 8 0.16
21 27 0.55
22 7 0.14
ACGTcount: A:0.37, C:0.36, G:0.01, T:0.26
Consensus pattern (20 bp):
CTAACCCTTAAACCCTAAAT
Found at i:32346140 original size:22 final size:24
Alignment explanation
Indices: 32346105--32346165 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 24
32346095 AAACTGTAAA
* *
32346105 CCATAACCCCTAAACTCA-TAA-T
1 CCATAAACCTTAAACTCAGTAACT
*
32346127 CCATAAACCTTAAAAT-AGTAACT
1 CCATAAACCTTAAACTCAGTAACT
32346150 CC-TAAACCTTAAACTC
1 CCATAAACCTTAAACTC
32346166 TAAATCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 1 0.03
22 28 0.88
23 3 0.09
ACGTcount: A:0.43, C:0.31, G:0.02, T:0.25
Consensus pattern (24 bp):
CCATAAACCTTAAACTCAGTAACT
Found at i:32346315 original size:41 final size:41
Alignment explanation
Indices: 32346258--32346633 Score: 621
Period size: 41 Copynumber: 9.1 Consensus size: 41
32346248 GATTATATAA
32346258 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
32346299 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
32346340 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
32346381 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
32346422 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
32346463 CTAAAGACCAGAGCATTAGCGGCGCTT-TCCCAAAAACGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCT-CCAAAAACGCCG
* * *
32346504 CTAAAGACCAGAGCATTAGCGTCGCTTCCCCAAAAATGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
* * * *
32346545 CTAAAGACCAAAGCATTAGCGGTGCTTTTCTAAAAACGCCG
1 CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
* * *
32346586 CTAAA-ACCCTGAGCATTAGCGGCGCTTTTCTAAAAAACGCCG
1 CTAAAGA-CCAGAGCATTAGCGGCGCTTCTC-CAAAAACGCCG
32346628 CTAAAG
1 CTAAAG
32346634 CCCCGAATGG
Statistics
Matches: 316, Mismatches: 14, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
40 2 0.01
41 299 0.95
42 15 0.05
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.16
Consensus pattern (41 bp):
CTAAAGACCAGAGCATTAGCGGCGCTTCTCCAAAAACGCCG
Found at i:32353340 original size:104 final size:104
Alignment explanation
Indices: 32353160--32353407 Score: 309
Period size: 104 Copynumber: 2.4 Consensus size: 104
32353150 CCTGTATGCA
* * * *
32353160 TGCCCGTGTGGCTCACACGGCCTAACACACGCCCGTGTCGTCTGCTTGTGTGGTTAAAAATCGTA
1 TGCCCGTGTGGCTCACACGGCCTGACACACGCCCGTGTCATCTGCTCGTGTGGGTAAAAATCGTA
32353225 AACAATGAGTCACACGACCTAGACACATGCTCGTGTCCT
66 AACAATGAGTCACACGACCTAGACACATGCTCGTGTCCT
* * ** *
32353264 TGCCCGTGTGGCTCACACGGCCTGACACTCGCCTGTGTCATCTAGC-CGTGTGGGTCTAAATTGT
1 TGCCCGTGTGGCTCACACGGCCTGACACACGCCCGTGTCATCT-GCTCGTGTGGGTAAAAATCGT
* * * * *
32353328 AAACACTGAGTCACACGGCTTGGACACATGTTCGTGTCCT
65 AAACAATGAGTCACACGACCTAGACACATGCTCGTGTCCT
* * * *
32353368 TGCCCATGTGACTCACACAGCCTGGGCACACGCCCGTGTC
1 TGCCCGTGTGGCTCACACGGCCT-GACACACGCCCGTGTC
32353408 CCTGGCCTGT
Statistics
Matches: 122, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
104 107 0.88
105 15 0.12
ACGTcount: A:0.20, C:0.31, G:0.25, T:0.24
Consensus pattern (104 bp):
TGCCCGTGTGGCTCACACGGCCTGACACACGCCCGTGTCATCTGCTCGTGTGGGTAAAAATCGTA
AACAATGAGTCACACGACCTAGACACATGCTCGTGTCCT
Found at i:32354656 original size:14 final size:15
Alignment explanation
Indices: 32354634--32354710 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32354624 CAATCAAACA
32354634 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
32354648 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
32354663 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
32354683 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
32354697 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
32354711 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:32354675 original size:20 final size:20
Alignment explanation
Indices: 32354650--32354689 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32354640 AATATTTTCC
*
32354650 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
32354670 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
32354690 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:32354695 original size:34 final size:35
Alignment explanation
Indices: 32354638--32354704 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32354628 CAAACACCAG
*
32354638 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
32354673 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
32354705 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:32356924 original size:27 final size:28
Alignment explanation
Indices: 32356867--32356924 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
32356857 TAGTCGGCAG
* *
32356867 AAAAAAGTTCAAGTACTAATTTAAGACA
1 AAAAAAATTCAAGCACTAATTTAAGACA
* *
32356895 AAAAAAATTTAAGCACTAATTTGAGA-A
1 AAAAAAATTCAAGCACTAATTTAAGACA
32356922 AAA
1 AAA
32356925 TAGACAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.57, C:0.09, G:0.10, T:0.24
Consensus pattern (28 bp):
AAAAAAATTCAAGCACTAATTTAAGACA
Found at i:32362162 original size:24 final size:24
Alignment explanation
Indices: 32362130--32362179 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
32362120 TTAAAAGTAG
32362130 ATCTCTACCTCATTTATACTTTTT
1 ATCTCTACCTCATTTATACTTTTT
32362154 ATCTCTACCTCATTTATACTTTTT
1 ATCTCTACCTCATTTATACTTTTT
32362178 AT
1 AT
32362180 ACCTATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (24 bp):
ATCTCTACCTCATTTATACTTTTT
Found at i:32365459 original size:25 final size:25
Alignment explanation
Indices: 32365430--32365479 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
32365420 AACAATTTGA
*
32365430 GAACAATCGGGGGTCCTTTTGAAAC
1 GAACAATCCGGGGTCCTTTTGAAAC
32365455 GAACAATCCGGGGTCCTTTTGAAAC
1 GAACAATCCGGGGTCCTTTTGAAAC
32365480 AAAATGGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (25 bp):
GAACAATCCGGGGTCCTTTTGAAAC
Found at i:32368952 original size:50 final size:51
Alignment explanation
Indices: 32368859--32369005 Score: 147
Period size: 50 Copynumber: 2.8 Consensus size: 51
32368849 ATATCCTAGA
* * *
32368859 TCGGTGCCCATGCCATGTCCCAGACATAGTCTT--ATGGGAGACCTCTC-ATC
1 TCGGTGCCAATGCCATGTCCCAGACATGGTATTACAT-GG-GACCTCTCAATC
*
32368909 TCGGTGCCAACGCCATGTCCCAGACATGGTATTACATGGGACCTCTCATAATC
1 TCGGTGCCAATGCCATGTCCCAGACATGGTATTACATGGGACCTCTC--AATC
** *
32368962 TCAATAATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGA
1 TC---GGTGCCAATGCCATGTCCCAGACATGGTATTACATGGGA
32369006 TCTCATTCCC
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
50 37 0.46
51 2 0.02
52 2 0.02
53 5 0.06
56 35 0.43
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (51 bp):
TCGGTGCCAATGCCATGTCCCAGACATGGTATTACATGGGACCTCTCAATC
Found at i:32374420 original size:9 final size:9
Alignment explanation
Indices: 32374403--32374433 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32374393 TCGAGTTGAT
32374403 TCGAATAAC
1 TCGAATAAC
*
32374412 TCGATTAAC
1 TCGAATAAC
32374421 TCGAATAAC
1 TCGAATAAC
32374430 TCGA
1 TCGA
32374434 TTTGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32377782 original size:32 final size:31
Alignment explanation
Indices: 32377733--32377818 Score: 100
Period size: 32 Copynumber: 2.7 Consensus size: 31
32377723 TGAAATATTT
32377733 AAAAGTTTTCATTTAAGTAACTAAACCATTC
1 AAAAGTTTTCATTTAAGTAACTAAACCATTC
* * * *
32377764 AAGAGTTTTCAATTTAAGTTATTAAACTATTC
1 AAAAGTTTTC-ATTTAAGTAACTAAACCATTC
* * *
32377796 AAAAGTTTTTATATAAGTCACTA
1 AAAAGTTTTCATTTAAGTAACTA
32377819 GGTTGCTAAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 19 0.42
32 26 0.58
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.40
Consensus pattern (31 bp):
AAAAGTTTTCATTTAAGTAACTAAACCATTC
Found at i:32378420 original size:12 final size:12
Alignment explanation
Indices: 32378403--32378428 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32378393 TTTACAACAC
32378403 AAATTTGGGTGT
1 AAATTTGGGTGT
32378415 AAATTTGGGTGT
1 AAATTTGGGTGT
32378427 AA
1 AA
32378429 GTAATTAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (12 bp):
AAATTTGGGTGT
Found at i:32380287 original size:24 final size:24
Alignment explanation
Indices: 32380242--32380287 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
32380232 ACAAATTTAT
* *
32380242 TTATTAAAAATTAATTTCATAACA
1 TTATTAAAAAGTAATTTAATAACA
* *
32380266 TTATTACAAAGTAGTTTAATAA
1 TTATTAAAAAGTAATTTAATAA
32380288 TATATAAATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (24 bp):
TTATTAAAAAGTAATTTAATAACA
Found at i:32382369 original size:7 final size:7
Alignment explanation
Indices: 32382357--32382382 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32382347 AAAATATTTT
32382357 AAAAATA
1 AAAAATA
32382364 AAAAATA
1 AAAAATA
32382371 AAAAATA
1 AAAAATA
32382378 AAAAA
1 AAAAA
32382383 AATATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:32382402 original size:45 final size:44
Alignment explanation
Indices: 32382351--32382436 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
32382341 AAACACAAAA
*
32382351 TATTTTAAAAATAAAAAATAAAAAATAAAAAAAATATTTTTAAAG
1 TATTTTAAAAATAAAAAAT-AAAAATAAAAAAAATATATTTAAAG
* *
32382396 TATTTTAAAATTAAAAAATAAAAATAAAAAATATATATTTA
1 TATTTTAAAAATAAAAAATAAAAATAAAAAAAATATATTTA
32382437 TTATATTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 20 0.53
45 18 0.47
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (44 bp):
TATTTTAAAAATAAAAAATAAAAATAAAAAAAATATATTTAAAG
Found at i:32387144 original size:32 final size:28
Alignment explanation
Indices: 32387103--32387173 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 28
32387093 TTAAATTGAT
32387103 AAATATAAAA-TTACACTTTAATCCCTTCTAA
1 AAATATAAAATTTA-A-TTTAAT-CCTT-TAA
32387134 AAATGATAAAAATTTAATTTAATCCTTTAA
1 AAAT-AT-AAAATTTAATTTAATCCTTTAA
32387164 AAATTATAAA
1 AAA-TATAAA
32387174 GATATAAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
29 3 0.08
30 8 0.22
31 9 0.25
32 8 0.22
33 5 0.14
34 3 0.08
ACGTcount: A:0.51, C:0.11, G:0.01, T:0.37
Consensus pattern (28 bp):
AAATATAAAATTTAATTTAATCCTTTAA
Found at i:32387667 original size:21 final size:21
Alignment explanation
Indices: 32387623--32387667 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32387613 ACTGTTGGTG
* *
32387623 TGGCAAGTTAACTAGCTAATT
1 TGGCAAGTTAACTAGCCAAGT
* *
32387644 TGGCTAGTTAACTTGCCAAGT
1 TGGCAAGTTAACTAGCCAAGT
32387665 TGG
1 TGG
32387668 AATTGAGCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (21 bp):
TGGCAAGTTAACTAGCCAAGT
Found at i:32389835 original size:3 final size:3
Alignment explanation
Indices: 32389827--32389859 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
32389817 TAAAGTGGTA
*
32389827 TTC TTC TTC TTT TTC TTC TTC TTC TTC -TC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
32389860 ACATCATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:32393211 original size:32 final size:31
Alignment explanation
Indices: 32393162--32393247 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 31
32393152 TGAAATATTC
32393162 AAAAGTTTTCATTTAAGTAACTAAACCA-TT
1 AAAAGTTTTCATTTAAGTAACTAAACCATTT
* *
32393192 AAAGAGTTTTCAATTTAAGTTACTAAACTATTT
1 AAA-AGTTTTC-ATTTAAGTAACTAAACCATTT
* * *
32393225 AAAAGTTTTTATATAAGTCACTA
1 AAAAGTTTTCATTTAAGTAACTA
32393248 GGTTGCCAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
30 3 0.06
31 18 0.38
32 22 0.46
33 5 0.10
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (31 bp):
AAAAGTTTTCATTTAAGTAACTAAACCATTT
Found at i:32393873 original size:85 final size:86
Alignment explanation
Indices: 32393769--32393940 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 86
32393759 TATAATATTT
32393769 TAACACATTTCAAGTAAAAAGATCAATTATAACTTTTCCTACTCAAAATTTTCGTCAATCACACC
1 TAACACATTTCAAGTAAAAAGATCAATTATAACTTTTCCTACTCAAAATTTTCGTCAATCACACC
32393834 TCTTTACCACACAAATTTGGA
66 TCTTTACCACACAAATTTGGA
32393855 TAACACATTTC-AGTAAAAAGATCAATTATAACTTTTCCTACTCAAAATTTTCGTCAATCACACC
1 TAACACATTTCAAGTAAAAAGATCAATTATAACTTTTCCTACTCAAAATTTTCGTCAATCACACC
32393919 TCTTTACCACACAAATTTGGA
66 TCTTTACCACACAAATTTGGA
32393940 T
1 T
32393941 GTAATTAATT
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 75 0.87
86 11 0.13
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (86 bp):
TAACACATTTCAAGTAAAAAGATCAATTATAACTTTTCCTACTCAAAATTTTCGTCAATCACACC
TCTTTACCACACAAATTTGGA
Found at i:32394939 original size:46 final size:47
Alignment explanation
Indices: 32394879--32394974 Score: 185
Period size: 46 Copynumber: 2.1 Consensus size: 47
32394869 CAACAGTTAA
32394879 AAGTCTCTGTGAGAAACCATTAGGGTATGCAGTGGAATTAATAAAAC
1 AAGTCTCTGTGAGAAACCATTAGGGTATGCAGTGGAATTAATAAAAC
32394926 AAGTCTC-GTGAGAAACCATTAGGGTATGCAGTGGAATTAATAAAAC
1 AAGTCTCTGTGAGAAACCATTAGGGTATGCAGTGGAATTAATAAAAC
32394972 AAG
1 AAG
32394975 CGAAAGCAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 42 0.86
47 7 0.14
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (47 bp):
AAGTCTCTGTGAGAAACCATTAGGGTATGCAGTGGAATTAATAAAAC
Found at i:32395842 original size:24 final size:24
Alignment explanation
Indices: 32395797--32395842 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
32395787 ACAAATTTAT
* *
32395797 TTATTAAAAATTAATTTCATAACA
1 TTATTAAAAAGTAATTTAATAACA
* *
32395821 TTATTACAAAGTAGTTTAATAA
1 TTATTAAAAAGTAATTTAATAA
32395843 TATATAAATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (24 bp):
TTATTAAAAAGTAATTTAATAACA
Found at i:32397318 original size:12 final size:12
Alignment explanation
Indices: 32397286--32397328 Score: 59
Period size: 12 Copynumber: 3.4 Consensus size: 12
32397276 TGTTAGATTG
32397286 TTATTATTACTGTA
1 TTATTATTA--GTA
*
32397300 ATATTATTAGTA
1 TTATTATTAGTA
32397312 TTATTATTAGTA
1 TTATTATTAGTA
32397324 TTATT
1 TTATT
32397329 TAATATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 19 0.70
14 8 0.30
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (12 bp):
TTATTATTAGTA
Found at i:32399279 original size:48 final size:49
Alignment explanation
Indices: 32399216--32399312 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 49
32399206 CTAATCCCTG
32399216 GCTTCTGCTCAGTTTACATCCGTTTTAGTTTTCACGCCCTAATTTGCCC
1 GCTTCTGCTCAGTTTACATCCGTTTTAGTTTTCACGCCCTAATTTGCCC
32399265 GCTTCTGCTC-GTTTACATCCGTTTTAGTTTTCACGCCCTAATTTGCCC
1 GCTTCTGCTCAGTTTACATCCGTTTTAGTTTTCACGCCCTAATTTGCCC
32399313 TCTGTTTCCT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 38 0.79
49 10 0.21
ACGTcount: A:0.13, C:0.31, G:0.14, T:0.41
Consensus pattern (49 bp):
GCTTCTGCTCAGTTTACATCCGTTTTAGTTTTCACGCCCTAATTTGCCC
Found at i:32400581 original size:17 final size:17
Alignment explanation
Indices: 32400556--32400599 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
32400546 TCTTTTTTTT
*
32400556 TATTATTATTGAAATTG
1 TATTTTTATTGAAATTG
32400573 TATTTTTATTGAAATTG
1 TATTTTTATTGAAATTG
32400590 TATTTTTATT
1 TATTTTTATT
32400600 TTCACCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (17 bp):
TATTTTTATTGAAATTG
Found at i:32406076 original size:44 final size:45
Alignment explanation
Indices: 32406011--32406101 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
32406001 ACCTCTATTC
* * *
32406011 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
32406055 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
32406100 CA
1 CA
32406102 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:32406103 original size:16 final size:16
Alignment explanation
Indices: 32406082--32406117 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
32406072 GATTAGCTAT
32406082 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32406098 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32406114 TACA
1 TACA
32406118 GTGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:32406281 original size:27 final size:27
Alignment explanation
Indices: 32406243--32406298 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
32406233 ATGCATCACA
32406243 ACCATGGCACTTGAGAATACTTTCAGC
1 ACCATGGCACTTGAGAATACTTTCAGC
32406270 ACCATGGCACTTGAGAATACTTTCAGC
1 ACCATGGCACTTGAGAATACTTTCAGC
32406297 AC
1 AC
32406299 TCCACCTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (27 bp):
ACCATGGCACTTGAGAATACTTTCAGC
Found at i:32410149 original size:25 final size:28
Alignment explanation
Indices: 32410112--32410166 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
32410102 TTTCTAAACT
*
32410112 TATACATGCA-TT-TTTATATAGTATATA
1 TATACAT-CATTTCTTTATATAATATATA
32410139 TATACAT-ATTTCTTTATATAATATATA
1 TATACATCATTTCTTTATATAATATATA
32410166 T
1 T
32410167 GTGTTCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 1 0.04
26 2 0.08
27 22 0.88
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (28 bp):
TATACATCATTTCTTTATATAATATATA
Found at i:32413090 original size:19 final size:20
Alignment explanation
Indices: 32413050--32413093 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
32413040 GTCTCTTTTC
* *
32413050 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
32413069 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
32413088 GCATTA
1 GCATTA
32413094 AAAACCTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:32417987 original size:132 final size:132
Alignment explanation
Indices: 32417670--32418384 Score: 1064
Period size: 132 Copynumber: 5.4 Consensus size: 132
32417660 NNNNNNNNNN
* *
32417670 GTAATTTTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
1 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
* *
32417735 GTAGTGGAGCAGATCAAAGATTGTGAATTTTACCTCCCTG-TGTTACAGTGGAGTACATTGAAGC
66 GTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
32417799 CA
131 CA
32417801 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
1 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
* *
32417866 GTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCTCTGTGGTTACAGTGGAGTACATTGAAGC
66 GTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
32417931 CA
131 CA
*
32417933 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTGTCTCCCCAAGCA
1 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
* *
32417998 GTAGTGGAGCAGATCACAGGTGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
66 GTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
32418063 CA
131 CA
* * * * *
32418065 GAAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGGTCTTATCTCCCTAAGCA
1 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
* *
32418130 GTAGTGAAGCAGATCAAAGATGG-CAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAG
66 GTAGTGGAGCAGATCAAAGATGGTGA-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAG
32418194 CCA
130 CCA
* * * *
32418197 GTAATACTA-TCTCCCTGGGC-GACAGTGGAATAGATTGGAGATTACAGATCTTGTCTCCCTAAG
1 GTAATTCTACT-TCCCTGGGCAG-CAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAG
* * * *
32418260 CAGTAGTGGAACAGATCAAAGATGG-CAGATTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGA
64 CAGTAGTGGAGCAGATCAAAGATGGTGA-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGA
32418324 AGCCA
128 AGCCA
* * * * ***
32418329 GTAATTCTA-TTCCCTCGGTCGGCAGTGGAATCGATCGAAGAAAGCAGATCTTGTCT
1 GTAATTCTACTTCCCT-GGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCT
32418385 TCATGTATTG
Statistics
Matches: 541, Mismatches: 37, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
131 109 0.20
132 431 0.80
133 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (132 bp):
GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
GTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
CA
Found at i:32420945 original size:3 final size:3
Alignment explanation
Indices: 32420937--32420985 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
32420927 CGGTTTCGAC
* * * *
32420937 AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAC AAT ATT AAT ATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32420985 A
1 A
32420986 TTTGTACAAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:32421491 original size:4 final size:4
Alignment explanation
Indices: 32421482--32421508 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
32421472 ACGCAAAGGT
32421482 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
32421509 TCGAACTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:32421969 original size:6 final size:6
Alignment explanation
Indices: 32421958--32422059 Score: 114
Period size: 6 Copynumber: 17.0 Consensus size: 6
32421948 AATTTAGTCC
* * * * * ** *
32421958 TATTCT TATTCT TATTCT TATTCT TATTCT TATTAT CCTTAC TATTAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
*
32422006 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TGTTAT TATTAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
*
32422054 CATTAT
1 TATTAT
32422060 ATTTCCATTT
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 86 1.00
ACGTcount: A:0.26, C:0.09, G:0.01, T:0.64
Consensus pattern (6 bp):
TATTAT
Found at i:32426139 original size:8 final size:8
Alignment explanation
Indices: 32426126--32426209 Score: 64
Period size: 8 Copynumber: 10.0 Consensus size: 8
32426116 AAAATTGTTA
32426126 AAAAAAAG
1 AAAAAAAG
32426134 AAAAAAAG
1 AAAAAAAG
32426142 AAGAAGAAAAG
1 -A-AA-AAAAG
32426153 AAAAAAAG
1 AAAAAAAG
32426161 AAGGAAAAAG
1 AA--AAAAAG
32426171 AAAAAAAG
1 AAAAAAAG
**
32426179 --AGGAAG
1 AAAAAAAG
*
32426185 AAGAAAAG
1 AAAAAAAG
*
32426193 AAAAAGAAA
1 AAAAA-AAG
32426202 AAAAAAAG
1 AAAAAAAG
32426210 GAGAGGCCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
6 4 0.07
8 30 0.50
9 10 0.17
10 11 0.18
11 5 0.08
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:32426139 original size:11 final size:11
Alignment explanation
Indices: 32426125--32426209 Score: 57
Period size: 11 Copynumber: 7.6 Consensus size: 11
32426115 AAAAATTGTT
*
32426125 AAAAAA-AAGA
1 AAAAAAGAAAA
*
32426135 AAAAAAGAAGA
1 AAAAAAGAAAA
*
32426146 AGAAAAGAAAA
1 AAAAAAGAAAA
*
32426157 AAAGAAGGAAAA
1 AAA-AAAGAAAA
*
32426169 AGAAAAA-AAGAG
1 A-AAAAAGAA-AA
* *
32426181 GAAGAAGAAAA
1 AAAAAAGAAAA
*
32426192 GAAAAAGAAAA
1 AAAAAAGAAAA
32426203 AAAAAAG
1 AAAAAAG
32426210 GAGAGGCCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
10 6 0.10
11 38 0.64
12 13 0.22
13 2 0.03
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:32426151 original size:19 final size:19
Alignment explanation
Indices: 32426129--32426197 Score: 95
Period size: 19 Copynumber: 3.5 Consensus size: 19
32426119 ATTGTTAAAA
32426129 AAAAGAAAAAAAGAAGAAG
1 AAAAGAAAAAAAGAAGAAG
*
32426148 AAAAGAAAAAAAGAAGGA-
1 AAAAGAAAAAAAGAAGAAG
32426166 AAAAGAAAAAAAGAGGAAGAAG
1 AAAAG-AAAAAA-A-GAAGAAG
32426188 AAAAGAAAAA
1 AAAAGAAAAA
32426198 GAAAAAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.11
19 23 0.52
20 1 0.02
21 10 0.23
22 5 0.11
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAAAGAAGAAG
Found at i:32426206 original size:37 final size:36
Alignment explanation
Indices: 32426125--32426206 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 36
32426115 AAAAATTGTT
32426125 AAAAAAAAGAAAAAAAGAAGAAGAAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAGAAGAAGAAAAGAAAAAAAG
* *
32426161 AAGGAAAAAGAAAAAAAGAGGAAGAAGAA-AAGAAAAAG
1 AA-AAAAAAGAAAAAAAGAAGAAGAA-AAGAA-AAAAAG
32426199 AAAAAAAA
1 AAAAAAAA
32426207 AAGGAGAGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
36 2 0.05
37 28 0.70
38 10 0.25
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (36 bp):
AAAAAAAAGAAAAAAAGAAGAAGAAAAGAAAAAAAG
Found at i:32427673 original size:132 final size:132
Alignment explanation
Indices: 32427431--32427743 Score: 376
Period size: 132 Copynumber: 2.4 Consensus size: 132
32427421 TGAAGCCATT
* * * * *
32427431 AGTCCTATCTCCCCAAGTAGCACTGGAGTAGGCCGAAGATTGTAGATCCTGTCTCCCTAAAAAGT
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTCCCTAAAAAGT
* *** * *
32427496 AGAGGAGCAGATCAAAGGTGGTGAATCTTATCTTCCCAAGTTAGTAGGGAAGT-ATATTTAAACC
66 AGAGAAGCAGATCAAAAAAGGTGAATCTTATCTTCCCAAGGTAGTAGGGAA-TCAGATTTAAACC
32427560 ACC
130 ACC
* * **
32427563 AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATTGTAGATCCTGTCTGCCTAAGCAGT
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTCCCTAAAAAGT
* * *
32427628 AGTGAAGCAGATCAAAAAAGGTGAATCTTATCTTCCTAAGGTAGTAGGGAATCAGATTTAAGCCA
66 AGAGAAGCAGATCAAAAAAGGTGAATCTTATCTTCCCAAGGTAGTAGGGAATCAGATTTAAACCA
**
32427693 TT
131 CC
* * * * * *
32427695 AGTCCTATCTCTCTGAGCAATAGTAGAGTAGGTTGAAGATTGCAGATCC
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCC
32427744 CATATCCCTG
Statistics
Matches: 153, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
131 1 0.01
132 152 0.99
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTCCCTAAAAAGT
AGAGAAGCAGATCAAAAAAGGTGAATCTTATCTTCCCAAGGTAGTAGGGAATCAGATTTAAACCA
CC
Found at i:32427893 original size:99 final size:99
Alignment explanation
Indices: 32427756--32428914 Score: 1334
Period size: 99 Copynumber: 11.7 Consensus size: 99
32427746 TATCCCTGGC
* * * * *
32427756 GGTGTAGTGGAATAGATTGAAGCTACAACAGTAAATCTTGC-TCCCTGACATTGCAGTTGAAAAG
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT-AAAAG
* * *
32427820 ATTGAAGCCATAACGACGAATCTTACTTCCCACGT
65 ATTGAGGCCACAACGACGAATCTTACTTCCCAGGT
* * * *
32427855 AGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTTCTTCCCTGACATTGTAATTAAAAGA
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
**
32427920 TTGAGGCCACAACGGTGAATCTTACTTCCCTA-GT
66 TTGAGGCCACAACGACGAATCTTACTTCCC-AGGT
* *
32427954 GGTGCAATGGAACAGACTGAAGCTACAACGGTGAATCTTGCTTCTCC-GACATT-CAATTAAAAG
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCTGACATTGCAATTAAAAG
* ** * * *
32428017 ATAGAGGCCACAACGGTGAATCTTACTTCTCTGGC
65 ATTGAGGCCACAACGACGAATCTTACTTCCCAGGT
* *
32428052 GGTGCAGTGGAACAGATTAAAGCTACAATGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
** *
32428117 TTGAGGCCACAACGACGAATCTTACTTTCTTA-GC
66 TTGAGGCCACAACGACGAATCTTAC-TTCCCAGGT
* * *
32428151 GGTGCAGTGGAATAGATTGAAGCTACAAC-GTCGAATCTTGCTTCCCCGACGTTGCAATTAAAAG
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGT-GAATCTTGCTTCCCTGACATTGCAATTAAAAG
* * * *
32428215 ATTGATGCTACAACGGCGAATCTTACTTCCCTGGT
65 ATTGAGGCCACAACGACGAATCTTACTTCCCAGGT
* * * **
32428250 GGTGTAGTGGAATAGATTGAAGCTACAACGGTGAATTTTGCTTCCCCAACATTGCAATTAAAAGA
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
* *
32428315 TTGAGGCCACAACGATGAATCTTACTTCCCTGGT
66 TTGAGGCCACAACGACGAATCTTACTTCCCAGGT
* *** *
32428349 GGTGCAGTGGAACAGGTTGAAGCTACAACGACAAATCTTGCTTCCCTGACATTACAATTAAAAGA
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
** ** * *
32428414 TTGAGGCCACAACGGTGAATCTTACTTTTCTGGC
66 TTGAGGCCACAACGACGAATCTTACTTCCCAGGT
* * ** *
32428448 GGTGCAGTGGAACAAATTGAAGCTACAAAGGTGAATCTTGCTTCCCCAACTTTGCAATTAAAAGA
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
* * *
32428513 TTGAGGCCACAACAACAAATCTTACTTTCCTA-GT
66 TTGAGGCCACAACGACGAATCTTAC-TTCCCAGGT
* *
32428547 GGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAGA
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
32428612 TTGAGGCCACAACGACGAATCTTACTTCCCTA-GT
66 TTGAGGCCACAACGACGAATCTTACTTCCC-AGGT
* * * *
32428646 GGTGCAGTGGAACAGATTGAAGCTATAATGGCGAATCTCT-CTTCCCTGACATTACAATTAAAAG
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCT-TGCTTCCCTGACATTGCAATTAAAAG
* * * * ** *
32428710 ATTGAAGCTACAAC-AGCGAATCTTATTTTCTTGGC
65 ATTGAGGCCACAACGA-CGAATCTTACTTCCCAGGT
* * *
32428745 GGTGTAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAAAG
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT-AAAAG
* * * * *
32428810 ATCGAAGCTACAAC-AGTGAATCTTACTTCCCAGGC
65 ATTGAGGCCACAACGA-CGAATCTTACTTCCCAGGT
* * ** * *
32428845 AGTGCAGTGGAACAGATTAAAGCTACAACAATGAATCTTGCTT-CTTCGACATTGTAATTAAATA
1 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCT-GACATTGCAATTAAA-A
32428909 GATTGA
64 GATTGA
32428915 AGCTACAATG
Statistics
Matches: 912, Mismatches: 129, Indels: 37
0.85 0.12 0.03
Matches are distributed among these distances:
97 2 0.00
98 96 0.11
99 700 0.77
100 114 0.12
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (99 bp):
GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAGA
TTGAGGCCACAACGACGAATCTTACTTCCCAGGT
Found at i:32428401 original size:297 final size:297
Alignment explanation
Indices: 32427748--32428914 Score: 1474
Period size: 297 Copynumber: 3.9 Consensus size: 297
32427738 AGATCCCATA
* * * *
32427748 TCCCTGGCGGTGTAGTGGAATAGATTGAAGCTACAAC-AGTAAATCTTGC-TCCCTGACATTGCA
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGA-CAAATCTTGCTTCCCTGACATTACA
* * ** *
32427811 GTTGAAAAGATTGAAGCCATAACGACGAATCTTAC-TTCCCA-CGTAGTACAGTGGAACAGATTG
65 ATT-AAAAGATTGAAGCCACAACGACGAATCTTACTTTCTTAGCG--GTGCAGTGGAACAGATTG
* * * * *
32427874 AAGCTACAACGGTGAATCTTTCTTCCCTGACATTGTAATTAAAAGATTGAGGCCACAACGGTGAA
127 AAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACAGCGAA
* * *
32427939 TCTTACTTCCCTAGTGGTGCAATGGAACAGACTGAAGCTACAACGGTGAATCTTGCTTCTCCGAC
192 TCTTACTTCCCTAGTGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
* *
32428004 ATT-CAATTAAAAGATAGAGGCCACAACGGTGAATCTTACT
257 ATTGCAATTAAAAGATTGAGGCCACAACGATGAATCTTACT
* * * *** *
32428044 TCTCTGGCGGTGCAGTGGAACAGATTAAAGCTACAATGGTGAATCTTGCTTCCCTGACATTGCAA
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGACAAATCTTGCTTCCCTGACATTACAA
* *
32428109 TTAAAAGATTGAGGCCACAACGACGAATCTTACTTTCTTAGCGGTGCAGTGGAATAGATTGAAGC
66 TTAAAAGATTGAAGCCACAACGACGAATCTTACTTTCTTAGCGGTGCAGTGGAACAGATTGAAGC
* * * *
32428174 TACAAC-GTCGAATCTTGCTTCCCCGACGTTGCAATTAAAAGATTGATGCTACAACGGCGAATCT
131 TACAACGGT-GAATCTTGCTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACAGCGAATCT
* * * * *
32428238 TACTTCCCTGGTGGTGTAGTGGAATAGATTGAAGCTACAACGGTGAATTTTGCTTCCCCAACATT
195 TACTTCCCTAGTGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
32428303 GCAATTAAAAGATTGAGGCCACAACGATGAATCTTACT
260 GCAATTAAAAGATTGAGGCCACAACGATGAATCTTACT
* *
32428341 TCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAACGACAAATCTTGCTTCCCTGACATTACAA
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGACAAATCTTGCTTCCCTGACATTACAA
* ** * *
32428406 TTAAAAGATTGAGGCCACAACGGTGAATCTTACTTT-TCTGGCGGTGCAGTGGAACAAATTGAAG
66 TTAAAAGATTGAAGCCACAACGACGAATCTTACTTTCT-TAGCGGTGCAGTGGAACAGATTGAAG
* * * * *
32428470 CTACAAAGGTGAATCTTGCTTCCCCAACTTTGCAATTAAAAGATTGAGGCCACAACAACAAATCT
130 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACAGCGAATCT
* *
32428535 TACTTTCCTAGTGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
195 TACTTCCCTAGTGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
*
32428600 GCAATTAAAAGATTGAGGCCACAACGACGAATCTTACT
260 GCAATTAAAAGATTGAGGCCACAACGATGAATCTTACT
* * * * * *
32428638 TCCCTAGTGGTGCAGTGGAACAGATTGAAGCTATAATGGCGAATCTCT-CTTCCCTGACATTACA
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGACAAATCT-TGCTTCCCTGACATTACA
* * * * *
32428702 ATTAAAAGATTGAAGCTACAAC-AGCGAATCTTATTTTCTTGGCGGTGTAGTGGAATAGATTGAA
65 ATTAAAAGATTGAAGCCACAACGA-CGAATCTTACTTTCTTAGCGGTGCAGTGGAACAGATTGAA
* * * * * *
32428766 GCTACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAAAGATCGAAGCTACAACAGTGAAT
129 GCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATT-AAAAGATTGAGGCCACAACAGCGAAT
* ** **
32428831 CTTACTTCCC-AG-GCAGTGCAGTGGAACAGATTAAAGCTACAACAATGAATCTTGCTTCTTCGA
193 CTTACTTCCCTAGTG--GTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGA
*
32428894 CATTGTAATTAAATAGATTGA
256 CATTGCAATTAAA-AGATTGA
32428915 AGCTACAATG
Statistics
Matches: 764, Mismatches: 92, Indels: 27
0.87 0.10 0.03
Matches are distributed among these distances:
295 2 0.00
296 203 0.27
297 463 0.61
298 89 0.12
299 7 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (297 bp):
TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGACAAATCTTGCTTCCCTGACATTACAA
TTAAAAGATTGAAGCCACAACGACGAATCTTACTTTCTTAGCGGTGCAGTGGAACAGATTGAAGC
TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACAGCGAATCTT
ACTTCCCTAGTGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTG
CAATTAAAAGATTGAGGCCACAACGATGAATCTTACT
Found at i:32428912 original size:50 final size:50
Alignment explanation
Indices: 32427766--32428922 Score: 410
Period size: 50 Copynumber: 23.4 Consensus size: 50
32427756 GGTGTAGTGG
* *
32427766 AATAGATTGAAGCTACAACAGTAAATCTTGC-TCCCTGACATTGCAGTTGA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTT-A
* * * * * * * **
32427816 AA-AGATTGAAGCCATAAC-GACGAATCTTACTTCCCACG-TAGTACAGTGG
1 AATAGATTGAAGCTACAACAG-TGAATCTTGCTTCCCA-GACATTGCAGTTA
* * * * * *
32427865 AACAGATTGAAGCTACAACGGTGAATCTTTCTTCCCTGACATTGTAATTA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * * * *** * **
32427915 AA-AGATTGAGGCCACAACGGTGAATCTTACTTCCCTAG-TGGTGCAATGG
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCC-AGACATTGCAGTTA
* * * *
32427964 AACAGACTGAAGCTACAACGGTGAATCTTGCTTCTCC-GACATT-CAATTA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTC-CCAGACATTGCAGTTA
* * * * * * * * ** **
32428013 AA-AGATAGAGGCCACAACGGTGAATCTTACTTCTCTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * ** * *
32428062 AACAGATTAAAGCTACAATGGTGAATCTTGCTTCCCTGACATTGCAATTA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * * * ** ** **
32428112 AA-AGATTGAGGCCACAAC-GACGAATCTTACTTTCTTAG-CGGTGCAGTGG
1 AATAGATTGAAGCTACAACAG-TGAATCTTGC-TTCCCAGACATTGCAGTTA
* * *
32428161 AATAGATTGAAGCTACAAC-GTCGAATCTTGCTTCCCCGACGTTGCAATTA
1 AATAGATTGAAGCTACAACAGT-GAATCTTGCTTCCCAGACATTGCAGTTA
* * * * * **** * **
32428211 AA-AGATTGATGCTACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGG
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * *
32428260 AATAGATTGAAGCTACAACGGTGAATTTTGCTTCCCCA-ACATTGCAATTA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTT-CCCAGACATTGCAGTTA
* * * * **** **
32428310 AA-AGATTGAGGCCACAAC-GATGAATCTTACTTCCCTGGTGGTGCAGTGG
1 AATAGATTGAAGCTACAACAG-TGAATCTTGCTTCCCAGACATTGCAGTTA
* * ** * * *
32428359 AACAGGTTGAAGCTACAAC-GACAAATCTTGCTTCCCTGACATTACAATTA
1 AATAGATTGAAGCTACAACAG-TGAATCTTGCTTCCCAGACATTGCAGTTA
* * * * ** * * ** **
32428409 AA-AGATTGAGGCCACAACGGTGAATCTTACTTTTCTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * * *
32428458 AACAAATTGAAGCTACAA-AGGTGAATCTTGCTTCCCCA-ACTTTGCAATTA
1 AATAGATTGAAGCTACAACA-GTGAATCTTGCTT-CCCAGACATTGCAGTTA
* * *** * * *** * **
32428508 AA-AGATTGAGGCCACAACAACAAATCTTACTTTCCTAG-TGGTGTAGTGG
1 AATAGATTGAAGCTACAACAGTGAATCTTGC-TTCCCAGACATTGCAGTTA
* * * *
32428557 AACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * * * *** **
32428607 AA-AGATTGAGGCCACAAC-GACGAATCTTACTTCCCTAG-TGGTGCAGTGG
1 AATAGATTGAAGCTACAACAG-TGAATCTTGCTTCCC-AGACATTGCAGTTA
* * ** * * * *
32428656 AACAGATTGAAGCTATAATGGCGAATCTCT-CTTCCCTGACATTACAATTA
1 AATAGATTGAAGCTACAACAGTGAATCT-TGCTTCCCAGACATTGCAGTTA
* ** * ** * ** * **
32428706 AA-AGATTGAAGCTACAACAGCGAATCTTATTTTCTTGGCGGTGTAGTGG
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* *
32428755 AATAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * * * * **
32428805 AAAAGATCGAAGCTACAACAGTGAATCTTACTTCCCAGGCAGTGCAGTGG
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
* * * * * *
32428855 AACAGATTAAAGCTACAACAATGAATCTTGCTTCTTC-GACATTGTAATTA
1 AATAGATTGAAGCTACAACAGTGAATCTTGCTTC-CCAGACATTGCAGTTA
32428905 AATAGATTGAAGCTACAA
1 AATAGATTGAAGCTACAA
32428923 TGATCGAAAA
Statistics
Matches: 791, Mismatches: 274, Indels: 84
0.69 0.24 0.07
Matches are distributed among these distances:
47 1 0.00
48 37 0.05
49 305 0.39
50 437 0.55
51 11 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (50 bp):
AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCCAGACATTGCAGTTA
Found at i:32429012 original size:44 final size:44
Alignment explanation
Indices: 32428944--32429566 Score: 251
Period size: 44 Copynumber: 14.4 Consensus size: 44
32428934 GGCAAGTCTC
*
32428944 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCTT
* * * *
32428988 ATCTCTCTGAAGTTGCAGTAGAGCAAATCA-CAG---CCAGTCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAACCAATCTT
* * * * * * * *
32429029 ATCTCCCTAAAGTTGTAATGGGGCAGACAGAAGAAGCTAATCCT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCTT
* * * * *
32429073 ATCTC-CTTGAAGCTGCAATAGAGC-GA-ATTAA-AACCACAAATCTT
1 ATCTCTC-TGAAGTTGCAGTGGAGCAGACA-GAAGAA--ACCAATCTT
* * * * *
32429117 ATCTCTCTGAAGTTGTAGT--AG-AG-CAGATCGCATCCAGTCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAATCTT
* * ** * *
32429158 ATCTCCCTGAAGTTACAGTGGAGCAGACAGAAGAAGTCGATCCT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCTT
** ** *
32429202 ATCT-TCTTGAAGTTGCAGTGGAGTGGA-TTAA-AACCACAGATCTT
1 ATCTCTC-TGAAGTTGCAGTGGAGCAGACAGAAGAAAC-CA-ATCTT
* * * * * * *
32429246 ATCTCTCTAAAGTTGTAGT--AG-AG-CAGATCGCATCTAGTCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAATCTT
* * * *
32429287 ATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCTT
* * **
32429331 ATCTCCCTGAAGTTGCAGTGGAGC-G-GATTA-AAACCATAGATCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC--A-ATCTT
* * * * *
32429375 ATCTCTCTAAAGTTGCAGT--AG-AG-CAGATCGCATCCAGTCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGA-AGAAACCAATCTT
* * * *
32429416 ATCTCCCTGAAGTTGTAGTAGAGCAGACAGAAGAAGA-CTATCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAA-ACCAATCTT
* * ** * *
32429460 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGAAATCAATCCT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCTT
* * * * * * *
32429504 ATCTTTCTGAAGTTGCAGTGAAGCGGATTAAAATGATA--GATCTT
1 ATCTCTCTGAAGTTGCAGTGGAGCAGA-CAGAA-GAAACCAATCTT
32429548 ATCTCTCTGAAGTTGCAGT
1 ATCTCTCTGAAGTTGCAGT
32429567 AGAGTAGATC
Statistics
Matches: 425, Mismatches: 111, Indels: 86
0.68 0.18 0.14
Matches are distributed among these distances:
40 2 0.00
41 97 0.23
42 19 0.04
43 21 0.05
44 263 0.62
45 20 0.05
46 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
ATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCTT
Found at i:32429084 original size:85 final size:85
Alignment explanation
Indices: 32428938--32429096 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 85
32428928 GAAAATGGCA
* * * *
32428938 AGTCTCATCTCTCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCTCTGAAGTTG
1 AGTCTCATCTCCCTAAAGTTGCAATGGAGCAGACAGAAGAAACCAATCCTATCTCTCTGAAGCTG
*
32429003 CAGTAGAGCAAATCACAGCC
66 CAATAGAGCAAATCACAGCC
* * * * *
32429023 AGTCTTATCTCCCTAAAGTTGTAATGGGGCAGACAGAAGAAGCTAATCCTATCTC-CTTGAAGCT
1 AGTCTCATCTCCCTAAAGTTGCAATGGAGCAGACAGAAGAAACCAATCCTATCTCTC-TGAAGCT
32429087 GCAATAGAGC
65 GCAATAGAGC
32429097 GAATTAAAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
84 1 0.02
85 62 0.98
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (85 bp):
AGTCTCATCTCCCTAAAGTTGCAATGGAGCAGACAGAAGAAACCAATCCTATCTCTCTGAAGCTG
CAATAGAGCAAATCACAGCC
Found at i:32429184 original size:129 final size:129
Alignment explanation
Indices: 32428982--32429482 Score: 691
Period size: 129 Copynumber: 3.9 Consensus size: 129
32428972 AGAAGAAACC
* * * * * * *
32428982 AATCCTATCTCTCTGAAGTTGCAGTAGAGCAAATCACAGCCAGTCTTATCTCCCTAAAGTTGTAA
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAG
* * * * * *
32429047 TGGGGCAGACAGAAGAAGCTAATCCTATCTCCTTGAAGCTGCAATAGAGCGAATTAAAACCACA
66 TGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
* * * *
32429111 AATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTACAG
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAG
* * * *
32429176 TGGAGCAGACAGAAGAAG-TCGATCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAACCACA
66 TGGAGCAGACAGAAGAAGCT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
* * *
32429240 GATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTAAAGTTGCAG
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAG
* *
32429305 TGGAGCAGACAGAAGAAGCTAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATA
66 TGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
* * *
32429369 GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGTAG
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAG
* *
32429434 TAGAGCAGACAGAAGAAGACT-ATCTTATCTCCCTGAAGTTGCAGTGGAG
66 TGGAGCAGACAGAAGAAG-CTAATCCTATCTCCCTGAAGTTGCAGTGGAG
32429483 TAGATTGAAG
Statistics
Matches: 336, Mismatches: 33, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
128 1 0.00
129 332 0.99
130 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (129 bp):
AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAG
TGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
Found at i:32429464 original size:85 final size:86
Alignment explanation
Indices: 32429112--32429575 Score: 279
Period size: 85 Copynumber: 5.4 Consensus size: 86
32429102 AAAACCACAA
* * * *
32429112 ATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTACAGT
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGT
* *
32429177 GGAGCAGA-CAGAAGAAGTCG
66 AGAGCAGATCAGAAGAAGACG
* * ** * * * *
32429197 ATCCTATCT-TCTTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
1 ATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGA-TAGAATC-CAG-TCTTATCTCCCTGAAGTTG
* * ***
32429261 TAGTAGAGCAGATC-GCA-TCTA-G
62 CAGTAGAGCAGATCAGAAGAAGACG
* * * * *
32429283 -TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGA-AGAAGCTAATCTTATCTCCCTGAAGTTG
1 ATCTTATCTCTCTGAAGTTGCAGT--AG-AG-CAGATAGAATCCAGTCTTATCTCCCTGAAGTTG
* * * * ** *
32429346 CAGTGGAGCGGATTAAAACCATA-G
62 CAGTAGAGCAGATCAGAAGAAGACG
* * * *
32429370 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGTAGT
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGT
*
32429435 AGAGCAGA-CAGAAGAAGACT
66 AGAGCAGATCAGAAGAAGACG
* * * * * **
32429455 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGAAAT-CAATCCTATCTTTCTGAAGTTG
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T--AG-AATCCAGTCTTATCTCCCTGAAGTTG
* * * *
32429519 CAGT-GAAGCGGATTA-AA-ATGATAG
62 CAGTAG-AGCAGATCAGAAGAAGA-CG
*
32429543 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
32429576 CGCATCAGAC
Statistics
Matches: 285, Mismatches: 72, Indels: 42
0.71 0.18 0.11
Matches are distributed among these distances:
84 11 0.04
85 131 0.46
86 10 0.04
87 16 0.06
88 111 0.39
89 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (86 bp):
ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAATCCAGTCTTATCTCCCTGAAGTTGCAGT
AGAGCAGATCAGAAGAAGACG
Found at i:32429507 original size:129 final size:127
Alignment explanation
Indices: 32428944--32429522 Score: 664
Period size: 129 Copynumber: 4.5 Consensus size: 127
32428934 GGCAAGTCTC
* * * *
32428944 ATCTCTCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAACCAATCCTATCTCTCTGAAGTTGCAGTA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AA-ACA-CAATCTTATCTCTCTGAAGTTGCAGTA
* * * * * *
32429008 GAGCAAATCACAGCCAGTCTTATCTCCCTAAAGTTGTAATGGGGCAGACAGAAGAAGCTAATCCT
63 GAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCT
* * * * *
32429073 ATCTCCTTGAAGCTGCAATAGAGC-GAATTAAAACCACAAATCTTATCTCTCTGAAGTTGTAGTA
1 ATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAA-CAC-AATCTTATCTCTCTGAAGTTGCAGTA
* * *
32429137 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACAGAAGAAG-TCGATCC
63 GAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAGCT-AATCC
32429201 T
127 T
* * ** * *
32429202 ATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGTAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CACA-ATCTTATCTCTCTGAAGTTGCAGTAG
* *
32429267 AGCAGATCGCATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCTT
64 AGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCT
* * *
32429331 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CACA-ATCTTATCTCTCTGAAGTTGCAGTAG
* * * *
32429396 AGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGTAGTAGAGCAGACAGAAGAAGACT-ATCTT
64 AGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAG-CTAATCCT
* * *
32429460 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGAA-ATCAATCCTATCTTTCTGAAGTTGCAGT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-AACA-CAATCTTATCTCTCTGAAGTTGCAGT
32429523 GAAGCGGATT
Statistics
Matches: 394, Mismatches: 44, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
128 5 0.01
129 379 0.96
130 8 0.02
131 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (127 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACACAATCTTATCTCTCTGAAGTTGCAGTAGAG
CAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCT
Found at i:32429635 original size:173 final size:174
Alignment explanation
Indices: 32429281--32429666 Score: 444
Period size: 173 Copynumber: 2.2 Consensus size: 174
32429271 GATCGCATCT
* * *
32429281 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAG-AAGCTAATCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCTAATCCTATCTCCCTGAAGTT
*
32429345 GCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCC
66 GCAGTGAAGCGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCC
* * * * *
32429410 AGTCTTATCTCCCTGAAGTTGTAGTAGAGCAGACAGAAGAAGACT
131 AGACTTATCTCCCTAAAGATGCAGTAGA-CAGACAGAAGAAGACA
* * * **
32429455 A-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGAAATC-AATCCTATCTTTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCTAATCCTATCTCCCTGAAGTT
** * *
32429518 GCAGTGAAGCGGATTAAAATGATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCAT-C
66 GCAGTGAAGCGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCC
* * * **
32429582 AGACTTTATTTTCTTAAAGATGCAGTA-A-A-ACAAGTTGAAGCTACA
131 AGAC-TTATCTCCCTAAAGATGCAGTAGACAGAC-AGAAGAAG--ACA
* * *
32429627 AGTCTTATCTCACTGAGGTTGCAGTGTAGCAGACTGAAGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA
32429667 TAGCAAATGT
Statistics
Matches: 178, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
169 2 0.01
170 7 0.04
172 8 0.04
173 157 0.88
174 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (174 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCTAATCCTATCTCCCTGAAGTT
GCAGTGAAGCGGATTAAAACCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCC
AGACTTATCTCCCTAAAGATGCAGTAGACAGACAGAAGAAGACA
Found at i:32434173 original size:44 final size:44
Alignment explanation
Indices: 32434118--32434218 Score: 148
Period size: 44 Copynumber: 2.3 Consensus size: 44
32434108 TTCATTCTAA
*
32434118 TCCACAACAACTTCAGATGTATAGGATTTGTTGCTTCAATCGAC
1 TCCACTACAACTTCAGATGTATAGGATTTGTTGCTTCAATCGAC
* * * * *
32434162 TCCACTGCAACTTCAGATGTATAGGATTTTTTGTTTTAATCTAC
1 TCCACTACAACTTCAGATGTATAGGATTTGTTGCTTCAATCGAC
32434206 TCCACTACAACTT
1 TCCACTACAACTT
32434219 TAGGGAGATT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (44 bp):
TCCACTACAACTTCAGATGTATAGGATTTGTTGCTTCAATCGAC
Found at i:32434244 original size:44 final size:44
Alignment explanation
Indices: 32434199--32434584 Score: 342
Period size: 44 Copynumber: 8.8 Consensus size: 44
32434189 TTTTTGTTTT
* * * *
32434199 AATCTACTCCACTACAACTTTAGGGAGATTAGACTTGTAGCTTT
1 AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
* * * * *
32434243 AATTTGCTCCACTACAACTTCAGGGAGATGAGACTCGTATCTTC
1 AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
* * * * *
32434287 AATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTATAACTTC
1 AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
** * *
32434331 AATCTGTTCGACTACAACTTCAGGGAGATAAGATTTGTAACTTC
1 AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
* * *
32434375 TATCTACTCCACTGCAACTTCTGGGAGATAAGACTTGTAACTTC
1 AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
* * * *
32434419 AATCTACTCCATTGCAACTTCAGGGAGATAAGATTTGTAACCTC
1 AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
* * * * * * *
32434463 AATTTGCTCTACTGA-AACTTCAGAGAGATAAGATTTTCTATCTTC
1 AATCTACTCCACT-ACAACTTCAGGGAGATAAGA-CTTGTAACTTC
* * ** * * ** *
32434508 AATATGCTCCACTGTAACTTCAGGGAGATAATATTTGTGGCTTT
1 AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
* ** *
32434552 AATCTACTCTACTGTAACTTCAGAGAGATAAGA
1 AATCTACTCCACTACAACTTCAGGGAGATAAGA
32434585 TTTACTATCT
Statistics
Matches: 284, Mismatches: 55, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
44 249 0.88
45 35 0.12
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
AATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTC
Found at i:32434345 original size:132 final size:132
Alignment explanation
Indices: 32434151--32434634 Score: 447
Period size: 132 Copynumber: 3.7 Consensus size: 132
32434141 GGATTTGTTG
* * * *** * * *
32434151 CTTCAATCGACTCCACTGCAACTTCA--GATGTATAGGATTTTTTGTTTTAATCTACTCCACTAC
1 CTTCAATCTACTCCACTGCAACTTCAGGGA-G-ATAAGATTTATAACTTCAATCTGCTCGACTAC
* * * * * * * *
32434214 AACTTTAGGGAGATTAGACTTGTAGCTTTAATTTGCTCCACTACAACTTCAGGGAGATGAGACTC
64 AACTTCAGGGAGATAAGATTTGTAACTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGACTT
*
32434279 GTAT
129 GTAA
* * *
32434283 CTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTATAACTTCAATCTGTTCGACTACAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAATCTGCTCGACTACAA
* * *
32434348 CTTCAGGGAGATAAGATTTGTAACTTCT-ATCTACTCCACTGCAACTTCTGGGAGATAAGACTTG
66 CTTCAGGGAGATAAGATTTGTAACTT-TAATATGCTCCACTGCAACTTCAGGGAGATAAGACTTG
32434412 TAA
130 TAA
* * * * *
32434415 CTTCAATCTACTCCATTGCAACTTCAGGGAGATAAGATTTGTAACCTCAATTTGCTCTACTGA-A
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAATCTGCTCGACT-ACA
* * * * * * *
32434479 ACTTCAGAGAGATAAGATTTTCTATCTTCAATATGCTCCACTGTAACTTCAGGGAGATAATATTT
65 ACTTCAGGGAGATAAGA-TTTGTAACTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGACTT
**
32434544 GTGG
129 GTAA
* * * * * * *
32434548 CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGC-CTTACTGC
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTA-TAACTTCAATCTGCTC-GACTAC
* *
32434612 AACTTCAGAGAGATAAAATTTGT
64 AACTTCAGGGAGATAAGATTTGT
32434635 CACGATAACT
Statistics
Matches: 288, Mismatches: 55, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
132 172 0.60
133 82 0.28
134 34 0.12
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (132 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTCAATCTGCTCGACTACAA
CTTCAGGGAGATAAGATTTGTAACTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
AA
Found at i:32434562 original size:89 final size:88
Alignment explanation
Indices: 32434196--32434634 Score: 414
Period size: 88 Copynumber: 5.0 Consensus size: 88
32434186 GATTTTTTGT
* * * * * * * * * *
32434196 TTTAATCTACTCCACTACAACTTTAGGGAGATTAGACTTGTAGCTTTAATTTGCTCCACTACAAC
1 TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTCTAACTTCAATCTGCTCCACTGCAAC
* * * *
32434261 TTCAGGGAGATGAGACTCGTATC
66 TTCAGGGAGATAAGATTTGTAAC
* * * * * * * *
32434284 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTATAACTTCAATCTGTTCGACTACAAC
1 TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTCTAACTTCAATCTGCTCCACTGCAAC
32434349 TTCAGGGAGATAAGATTTGTAAC
66 TTCAGGGAGATAAGATTTGTAAC
* * * * * *
32434372 TTCT-ATCTACTCCACTGCAACTTCTGGGAGATAAGACTTGTAACTTCAATCTACTCCATTGCAA
1 TT-TAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTCTAACTTCAATCTGCTCCACTGCAA
32434436 CTTCAGGGAGATAAGATTTGTAAC
65 CTTCAGGGAGATAAGATTTGTAAC
* * * * * * * * *
32434460 CTCAATTTGCTCTACTGAAACTTCAGAGAGATAAGATTTTCTATCTTCAATATGCTCCACTGTAA
1 TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGA-TTTCTAACTTCAATCTGCTCCACTGCAA
* **
32434525 CTTCAGGGAGATAATATTTGTGGC
65 CTTCAGGGAGATAAGATTTGTAAC
* * * *
32434549 TTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGC-CTTACTGCA
1 TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTT-CTAACTTCAATCTGCTC-CACTGCA
* *
32434613 ACTTCAGAGAGATAAAATTTGT
64 ACTTCAGGGAGATAAGATTTGT
32434635 CACGATAACT
Statistics
Matches: 290, Mismatches: 56, Indels: 9
0.82 0.16 0.03
Matches are distributed among these distances:
88 178 0.61
89 112 0.39
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (88 bp):
TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTCTAACTTCAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGATTTGTAAC
Found at i:32441451 original size:41 final size:41
Alignment explanation
Indices: 32441362--32441475 Score: 203
Period size: 41 Copynumber: 2.8 Consensus size: 41
32441352 ACTGGCACTT
*
32441362 AGCCTGCTAGACATAAAGTCTGAAATGTTTCA-CGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAATGTTTCACCGGCGTCA
*
32441402 AGCCTGCTAGATGTAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAATGTTTCACCGGCGTCA
32441443 AGCCTGCTAGACGTAAAGTCTGAAATGTTTCAC
1 AGCCTGCTAGACGTAAAGTCTGAAATGTTTCAC
32441476 TGGCAATAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
40 30 0.43
41 40 0.57
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAATGTTTCACCGGCGTCA
Found at i:32441860 original size:75 final size:75
Alignment explanation
Indices: 32441773--32441926 Score: 184
Period size: 75 Copynumber: 2.1 Consensus size: 75
32441763 AATATACATA
* * ** * * *
32441773 CATAATCGAACCTCCCT-TACACATATATAAATTTCATACTTATACTCATTACAAGAACATATAC
1 CATAATCGAACCT-CATATAAACATATATAAATGGCATACCTAAACTCAATACAAGAACATATAC
*
32441837 ATGCATGTTTG
65 ATGCATATTTG
* * *
32441848 CATAATCGAACCTCATATAAACTTGTATAAATGGCATACCTAAATTCAATACAAGAACATATACA
1 CATAATCGAACCTCATATAAACATATATAAATGGCATACCTAAACTCAATACAAGAACATATACA
*
32441913 TGTATATTTG
66 TGCATATTTG
32441923 CATA
1 CATA
32441927 TTATAGATCC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 2 0.03
75 64 0.97
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (75 bp):
CATAATCGAACCTCATATAAACATATATAAATGGCATACCTAAACTCAATACAAGAACATATACA
TGCATATTTG
Found at i:32449691 original size:21 final size:21
Alignment explanation
Indices: 32449662--32449708 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
32449652 TTCGGCATCT
32449662 GCCGCAGCTAAGAAACCGGCC
1 GCCGCAGCTAAGAAACCGGCC
* * *
32449683 GCCGTAGCTAAGAAGCCTGCC
1 GCCGCAGCTAAGAAACCGGCC
32449704 GCCGC
1 GCCGC
32449709 GAAGCCTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.38, G:0.30, T:0.09
Consensus pattern (21 bp):
GCCGCAGCTAAGAAACCGGCC
Found at i:32456350 original size:20 final size:20
Alignment explanation
Indices: 32456321--32456360 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32456311 TTTATGTCAC
* * *
32456321 TTTAATAATATTTTAAAATT
1 TTTAAAAATAATTAAAAATT
32456341 TTTAAAAATAATTAAAAATT
1 TTTAAAAATAATTAAAAATT
32456361 AAAAATAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTAAAAATAATTAAAAATT
Found at i:32456375 original size:17 final size:17
Alignment explanation
Indices: 32456342--32456376 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32456332 TTTAAAATTT
*
32456342 TTAAAAATAATTAAAAA
1 TTAAAAATAAATAAAAA
32456359 TTAAAAATAAATGAAAAA
1 TTAAAAATAAAT-AAAAA
32456377 ATCCCACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
TTAAAAATAAATAAAAA
Found at i:32459981 original size:90 final size:88
Alignment explanation
Indices: 32459853--32460015 Score: 208
Period size: 89 Copynumber: 1.8 Consensus size: 88
32459843 TTAATATTTT
* * *
32459853 TTTCTTAATTTGGTATTTGAATTTCTTTTGTTCAATTTGATACTT-AGACTTGACAT-GTTTTCT
1 TTTCTTAATTTGATATTTGAATTTCTTTTATTCAATTTGATACTTGA-ACTTGAC-TCTTTTTC-
32459916 TAATTTGGTACATGAACTTAACACAA
63 TAATTTGGTACATGAACTTAACACAA
*
32459942 TTTCTTAATTTGATACTTT-ATATTT-TTTTATTCTAATTTGGTACTTGAACTTGACTCTTTTTC
1 TTTCTTAATTTGATA-TTTGA-ATTTCTTTTATTC-AATTTGATACTTGAACTTGACTCTTTTTC
32460005 TAATTTGGTAC
63 TAATTTGGTAC
32460016 TATTTTTTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
89 34 0.52
90 30 0.46
91 1 0.02
ACGTcount: A:0.25, C:0.12, G:0.11, T:0.52
Consensus pattern (88 bp):
TTTCTTAATTTGATATTTGAATTTCTTTTATTCAATTTGATACTTGAACTTGACTCTTTTTCTAA
TTTGGTACATGAACTTAACACAA
Found at i:32460200 original size:19 final size:18
Alignment explanation
Indices: 32460172--32460212 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
32460162 TTAAATGTTC
*
32460172 AATTACTTTTAGTTTAATT
1 AATTAATTTTA-TTTAATT
*
32460191 AATTAATTTTATTTTATT
1 AATTAATTTTATTTAATT
32460209 AATT
1 AATT
32460213 TAAAATAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (18 bp):
AATTAATTTTATTTAATT
Found at i:32461808 original size:20 final size:20
Alignment explanation
Indices: 32461761--32461810 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
32461751 CATGTTCAAA
*
32461761 GTTTAAGGTTCGAGTTTGGG
1 GTTTAAGGTTCGAGTTTGAG
* *
32461781 GTTCAAGGTTCGAGTTTGAT
1 GTTTAAGGTTCGAGTTTGAG
32461801 GTTTAAGGTT
1 GTTTAAGGTT
32461811 TGAGATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.06, G:0.34, T:0.42
Consensus pattern (20 bp):
GTTTAAGGTTCGAGTTTGAG
Found at i:32462840 original size:127 final size:127
Alignment explanation
Indices: 32462602--32462840 Score: 268
Period size: 127 Copynumber: 1.9 Consensus size: 127
32462592 TTATTTCAAT
* * *
32462602 TTTAAAAGGATATTCGGTTATTTAGGATCACGAGAAAAATCGAAGCCCAGTAAGTTAGGGCACGA
1 TTTAAAAGGATATTCGGCTATTTAGGATAACGAGAAAAATCGAAGCCCAGTAAGTTAGGGCACAA
* * * ** * ***
32462667 TTTCTCGAATTTTCTAAATATAGGATATTACCTTTATTTTTGAAATTTTATGTGTTTGGAAA
66 TTTCTCGAATTTCCAAAATACAAAATATTACCTTCATTTACAAAATTTTATGTGTTTGGAAA
** * *
32462729 TTTAAAAGGATATTTTGCTATTTAGGTTTAACGAG-AAAATCG-AGACCCAGTAAGTTAGGGTAC
1 TTTAAAAGGATATTCGGCTATTTAGG-ATAACGAGAAAAATCGAAG-CCCAGTAAGTTAGGGCAC
* *
32462792 AATTTCTCGAATTTCCAAAATGCAAAATATTGCC-TCATTTAACAAAATT
64 AATTTCTCGAATTTCCAAAATACAAAATATTACCTTCATTT-ACAAAATT
32462841 CCATCTTGAA
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
126 7 0.08
127 78 0.86
128 6 0.07
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (127 bp):
TTTAAAAGGATATTCGGCTATTTAGGATAACGAGAAAAATCGAAGCCCAGTAAGTTAGGGCACAA
TTTCTCGAATTTCCAAAATACAAAATATTACCTTCATTTACAAAATTTTATGTGTTTGGAAA
Found at i:32463535 original size:37 final size:37
Alignment explanation
Indices: 32463485--32463555 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
32463475 ACAAAAATGG
* *
32463485 TTTAATATGAATAATATGTA-AAAATGAAATAAAACTA
1 TTTAATATGAATAATATATATAAAA-GAAAAAAAACTA
32463522 TTTAA-ATGAAATAATATATATAAAAGAAAAAAAA
1 TTTAATATG-AATAATATATATAAAAGAAAAAAAA
32463556 TTTACACAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 3 0.10
37 23 0.77
38 4 0.13
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (37 bp):
TTTAATATGAATAATATATATAAAAGAAAAAAAACTA
Found at i:32463550 original size:18 final size:18
Alignment explanation
Indices: 32463494--32463550 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
32463484 GTTTAATATG
*
32463494 AATAATATGTA-AAAATGA
1 AATAATATATATAAAA-GA
* * *
32463512 AATAAAACTATTTAAATGA
1 AATAATA-TATATAAAAGA
32463531 AATAATATATATAAAAGA
1 AATAATATATATAAAAGA
32463549 AA
1 AA
32463551 AAAAATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
18 17 0.57
19 10 0.33
20 3 0.10
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (18 bp):
AATAATATATATAAAAGA
Found at i:32464192 original size:13 final size:14
Alignment explanation
Indices: 32464166--32464198 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
32464156 AGGTAGTTCC
32464166 TTTCTTTTTCTTTT
1 TTTCTTTTTCTTTT
32464180 TTTCTTTTT-TTTT
1 TTTCTTTTTCTTTT
*
32464193 TATCTT
1 TTTCTT
32464199 ATTTGCTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTCTTTTTCTTTT
Found at i:32465125 original size:45 final size:44
Alignment explanation
Indices: 32465072--32465480 Score: 475
Period size: 45 Copynumber: 9.1 Consensus size: 44
32465062 TGGTTTTCGA
* *
32465072 TCTACTTCGTTGCCAATACAGGAAGACAATATCTGCTATCTTCAG
1 TCTACTTCGCTGCCAATACAGGAAGACAAGA-CTGCTATCTTCAG
* * *
32465117 TGTACTTCGCTGCAAATACAGGAAAACAAGACTTGCTATCTTC-G
1 TCTACTTCGCTGCCAATACAGGAAGACAAGAC-TGCTATCTTCAG
* * *
32465161 ATCTACTTCACTGCCAATACAGGAAGACAAAAACTGATATCTTCAG
1 -TCTACTTCGCTGCCAATACAGGAAGAC-AAGACTGCTATCTTCAG
*
32465207 TCTACTTCGCTGCCAATACAGGAAGACAAGACTTTCTATCTTC-G
1 TCTACTTCGCTGCCAATACAGGAAGACAAGAC-TGCTATCTTCAG
* * * *
32465251 ATCTACTTCACTGCCAATATAGGAAGACAATATCTACTATCTTCAG
1 -TCTACTTCGCTGCCAATACAGGAAGACAAGA-CTGCTATCTTCAG
*
32465297 TCTACTTCGTTGCCAATACAGGAAGACAAGACTTGCTATCTTC-G
1 TCTACTTCGCTGCCAATACAGGAAGACAAGAC-TGCTATCTTCAG
* * *
32465341 ATCTATTTCACTGTCAATACAGGAAGACAAGATCTGCTATCTTCAG
1 -TCTACTTCGCTGCCAATACAGGAAGACAAGA-CTGCTATCTTCAG
*
32465387 TCTACTTCGCTGCCAATACAGGAAGACAAGACTAGCGATCTTC-G
1 TCTACTTCGCTGCCAATACAGGAAGACAAGACT-GCTATCTTCAG
* * * *
32465431 ATCTACTTCACTACCAATATAGGAAGATAAGATCTGCTATCTTCAG
1 -TCTACTTCGCTGCCAATACAGGAAGACAAGA-CTGCTATCTTCAG
32465477 TCTA
1 TCTA
32465481 ACTAACTGCA
Statistics
Matches: 311, Mismatches: 37, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
44 12 0.04
45 287 0.92
46 12 0.04
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (44 bp):
TCTACTTCGCTGCCAATACAGGAAGACAAGACTGCTATCTTCAG
Found at i:32465225 original size:90 final size:90
Alignment explanation
Indices: 32465067--32465480 Score: 639
Period size: 90 Copynumber: 4.6 Consensus size: 90
32465057 ATCTGTGGTT
** * * *
32465067 TTCGATCTACTTCGTTGCCAATACAGGAAGACAATATCTGCTATCTTCAGTGTACTTCGCTGCAA
1 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCA
*
32465132 ATACAGGAAAACAAGACTTGCTATC
66 ATACAGGAAGACAAGACTTGCTATC
* * *
32465157 TTCGATCTACTTCACTGCCAATACAGGAAGACAAAAACTGATATCTTCAGTCTACTTCGCTGCCA
1 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCA
*
32465222 ATACAGGAAGACAAGACTTTCTATC
66 ATACAGGAAGACAAGACTTGCTATC
* * * *
32465247 TTCGATCTACTTCACTGCCAATATAGGAAGACAATATCTACTATCTTCAGTCTACTTCGTTGCCA
1 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCA
32465312 ATACAGGAAGACAAGACTTGCTATC
66 ATACAGGAAGACAAGACTTGCTATC
* *
32465337 TTCGATCTATTTCACTGTCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCA
1 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCA
* *
32465402 ATACAGGAAGACAAGACTAGCGATC
66 ATACAGGAAGACAAGACTTGCTATC
* * *
32465427 TTCGATCTACTTCACTACCAATATAGGAAGATAAGATCTGCTATCTTCAGTCTA
1 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTA
32465481 ACTAACTGCA
Statistics
Matches: 295, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 295 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (90 bp):
TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCA
ATACAGGAAGACAAGACTTGCTATC
Found at i:32465660 original size:50 final size:50
Alignment explanation
Indices: 32465598--32466153 Score: 196
Period size: 50 Copynumber: 11.2 Consensus size: 50
32465588 GTAATGTCAG
32465598 GGAA-TAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
* * ** ** * * * **
32465647 GGAAGTAATATTCGTCGTTGCGGCTTCAATCT-TTTAATTGCGA-TGTCGG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGC-ACCGCCAA
* ** * *
32465696 GGAAGCAAGATTCGCCGTCATAGCTTTAATCTGCTCCACTGCACCGCCAA
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
** ** *** * ** * ** * *
32465746 AAAAGTAAGATTCGTTGTTACGGCTTCAATCTTTTTAATTGCAATGTCAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
* * *
32465796 GGAA-TAAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCACCACCAA
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
* ** * ** * * * **
32465845 AGAAGTAAGATTCGCCGTTGCGGTTTCAATCT-TTTAATTGCGA-TGTCGG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGC-ACCGCCAA
* * * * * *
32465894 GGAAGCATGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCC-A
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
* * ** * ** * ** * *
32465943 GGAAAGTAAGATTCGACATTGCGGCTTCAATAT-TTTAATTGCAATGTCAG
1 GG-AAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
* * * * * *
32465993 GGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCACTACATCACC-A
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
* *** * ** * ** * **
32466041 GAGAAGTAAGATTCACCGTTACGGCTTCAATCTTTTTAATTGCAATGTCGG
1 G-GAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
* * * * * * * *
32466092 GGAAGCAAGATTCACCGTCGTAGCTTTATTCTGCTCCACTGCATCGCCAG
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
32466142 GGAAGTAAGATT
1 GGAAGTAAGATT
32466154 TACCGTTGCG
Statistics
Matches: 333, Mismatches: 160, Indels: 27
0.64 0.31 0.05
Matches are distributed among these distances:
48 21 0.06
49 121 0.36
50 190 0.57
51 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (50 bp):
GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAA
Found at i:32465734 original size:99 final size:98
Alignment explanation
Indices: 32465487--32466191 Score: 777
Period size: 99 Copynumber: 7.1 Consensus size: 98
32465477 TCTAACTAAC
* * * * ** * **
32465487 TGCAATGTCGGGGAACAAGATTCACTGTTGTAGCTTCAATCTGTTTTACTACACTACC-AGAGAA
1 TGCAATGTCAGGGAACAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAG-GAA
*
32465551 GTAAGATTCGCCGTTGCGGCTTCAATTTTTTTAAAT
65 GTAAGATTCGCCGTTGCGGCTTCAA-TCTTTT-AAT
* * * * *
32465587 TGTAATGTCAGGGAATAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAAGGAAG
1 TGCAATGTCAGGGAACAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAG
* *
32465652 TAATATTCGTCGTTGCGGCTTCAATCTTTTAAT
66 TAAGATTCGCCGTTGCGGCTTCAATCTTTTAAT
* * * * * **
32465685 TGCGATGTCGGGGAAGCAAGATTCGCCGTCATAGCTTTAATCTGCTCCACTGCACCGCCAAAAAA
1 TGCAATGTCAGGGAA-CAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAA
** *
32465750 GTAAGATTCGTTGTTACGGCTTCAATCTTTTTAAT
65 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAAT
* * * * * *
32465785 TGCAATGTCAGGGAATAAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCACCACCAAAGAAG
1 TGCAATGTCAGGGAACAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAG
*
32465850 TAAGATTCGCCGTTGCGGTTTCAATCTTTTAAT
66 TAAGATTCGCCGTTGCGGCTTCAATCTTTTAAT
* * * *
32465883 TGCGATGTCGGGGAAGCATGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCC-AGGAA
1 TGCAATGTCAGGGAA-CAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAGG-A
* * *
32465947 AGTAAGATTCGACATTGCGGCTTCAATATTTTAAT
64 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAT
* * * * *
32465982 TGCAATGTCAGGGAACAAGATTCACCGTTGTAGCTTCAATCTGATCCACTACATCACC-AGAGAA
1 TGCAATGTCAGGGAACAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAG-GAA
* *
32466046 GTAAGATTCACCGTTACGGCTTCAATCTTTTTAAT
65 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAAT
* * * * *
32466081 TGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTATTCTGCTCCACTGCATCGCCAGGGAA
1 TGCAATGTCAGGGAA-CAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAA
** *
32466146 GTAAGATTTACCGTTGCGGCTTCAACCTTTTTAAT
65 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAAT
*
32466181 TGCAATCTCAG
1 TGCAATGTCAG
32466192 AGGTATGAAT
Statistics
Matches: 514, Mismatches: 82, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
98 99 0.19
99 237 0.46
100 175 0.34
101 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (98 bp):
TGCAATGTCAGGGAACAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAG
TAAGATTCGCCGTTGCGGCTTCAATCTTTTAAT
Found at i:32465829 original size:198 final size:198
Alignment explanation
Indices: 32465491--32466191 Score: 951
Period size: 198 Copynumber: 3.5 Consensus size: 198
32465481 ACTAACTGCA
* * * * ** * **
32465491 ATGTCGGGGAA-CAAGATTCACTGTTGTAGCTTCAATCTGTTTTACTACACTACCA-GAGAAGTA
1 ATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGA-AAGTA
* * *
32465554 AGATTCGCCGTTGCGGCTTCAATTTTTTTAAATTGTAATGTCAGGGAATAAGATTCGCCGTTGTA
65 AGATTCGCCGTTGCGGCTTCAATCTTTTT-AATTGCAATGTCAGGGAATAAGATTCACCGTTGTA
* * *
32465619 GCTTCAATCTGTTCCACTGCACCGCCAAGGAAGTAATATTCGTCGTTGCGGCTTCAATCTTTTAA
129 GCTTCAATCTGTTCCACTGCACCACCAAGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAA
32465684 TTGCG
194 TTGCG
* * **
32465689 ATGTCGGGGAAGCAAGATTCGCCGTCATAGCTTTAATCTGCTCCACTGCACCGCCAAAAAAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGAAAGTAA
** * *
32465754 GATTCGTTGTTACGGCTTCAATCTTTTTAATTGCAATGTCAGGGAATAAGATTCACCATTGTAGC
66 GATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTCAGGGAATAAGATTCACCGTTGTAGC
* *
32465819 TTCAATCTGTTCCACTGCACCACCAAAGAAGTAAGATTCGCCGTTGCGGTTTCAATCTTTTAATT
131 TTCAATCTGTTCCACTGCACCACCAAGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATT
32465884 GCG
196 GCG
*
32465887 ATGTCGGGGAAGCATGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGAAAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGAAAGTAA
* * * *
32465952 GATTCGACATTGCGGCTTCAAT-ATTTTAATTGCAATGTCAGGGAACAAGATTCACCGTTGTAGC
66 GATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTCAGGGAATAAGATTCACCGTTGTAGC
* * * * *
32466016 TTCAATCTGATCCACTACATCACC-AGAGAAGTAAGATTCACCGTTACGGCTTCAATCTTTTTAA
131 TTCAATCTGTTCCACTGCACCACCAAG-GAAGTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAA
*
32466080 TTGCA
194 TTGCG
* * *
32466085 ATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTATTCTGCTCCACTGCATCGCCAGGGAAGTAA
1 ATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGAAAGTAA
** * *
32466150 GATTTACCGTTGCGGCTTCAACCTTTTTAATTGCAATCTCAG
66 GATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTCAG
32466192 AGGTATGAAT
Statistics
Matches: 443, Mismatches: 55, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
196 1 0.00
197 87 0.20
198 274 0.62
199 80 0.18
200 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (198 bp):
ATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGAAAGTAA
GATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTCAGGGAATAAGATTCACCGTTGTAGC
TTCAATCTGTTCCACTGCACCACCAAGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATT
GCG
Found at i:32467101 original size:18 final size:18
Alignment explanation
Indices: 32467048--32467105 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
32467038 TGGCCTCTCA
32467048 TTTTTCTTTTTTGTTATTC
1 TTTTTCTTTTTTGTT-TTC
*
32467067 -TTTTCTTTTCTTTTTTTC
1 TTTTTCTTTT-TTGTTTTC
32467085 TTTTTCTTTTTTGTTTT-
1 TTTTTCTTTTTTGTTTTC
32467102 TTTT
1 TTTT
32467106 CAAGTGAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.11
18 18 0.51
19 13 0.37
ACGTcount: A:0.02, C:0.10, G:0.03, T:0.84
Consensus pattern (18 bp):
TTTTTCTTTTTTGTTTTC
Found at i:32467103 original size:14 final size:14
Alignment explanation
Indices: 32467067--32467096 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32467057 TTTGTTATTC
32467067 TTTTC-TTTTCTTT
1 TTTTCTTTTTCTTT
32467080 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
32467094 TTT
1 TTT
32467097 GTTTTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:32472716 original size:18 final size:19
Alignment explanation
Indices: 32472671--32472720 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
32472661 ATAATACGTA
*
32472671 AAAATGAAATAAAACTATTT
1 AAAA-GAAATAAAACTATAT
* *
32472691 AAATGAAATAATA-TATAT
1 AAAAGAAATAAAACTATAT
32472709 AAAAGAAA-AAAA
1 AAAAGAAATAAAA
32472721 TTACACAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 3 0.12
18 11 0.44
19 8 0.32
20 3 0.12
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (19 bp):
AAAAGAAATAAAACTATAT
Found at i:32478628 original size:20 final size:19
Alignment explanation
Indices: 32478603--32478659 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 19
32478593 TATATTAAAT
32478603 ATATATTTATTTTTAATCAA
1 ATATA-TTATTTTTAATCAA
*
32478623 ATATA-TATTTTATATATTAA
1 ATATATTATTTT-TA-ATCAA
*
32478643 ATATATATATATTTAAT
1 ATATAT-TATTTTTAAT
32478660 ATGGGTTGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 6 0.19
19 2 0.06
20 16 0.52
21 2 0.06
22 5 0.16
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
ATATATTATTTTTAATCAA
Found at i:32478642 original size:24 final size:24
Alignment explanation
Indices: 32478598--32478661 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
32478588 AATTATATAT
*
32478598 TAAATATATA-TTTAT-T-TTTAA
1 TAAATATATATTTTATATATTAAA
32478619 TCAAATATATATTTTATATATTAAA
1 T-AAATATATATTTTATATATTAAA
* *
32478644 TATATATATATTTAATAT
1 TAAATATATATTTTATAT
32478662 GGGTTGGGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 1 0.03
22 9 0.25
23 5 0.14
24 16 0.44
25 5 0.14
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
TAAATATATATTTTATATATTAAA
Found at i:32478648 original size:22 final size:22
Alignment explanation
Indices: 32478590--32478661 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
32478580 CGGGCCCAAA
32478590 TTATATATTAAATATATATTTATT
1 TTATATATTAAATATATA--TATT
*
32478614 TT-TA-A-TCAA-ATATATATT
1 TTATATATTAAATATATATATT
32478632 TTATATATTAAATATATATATAT
1 TTATATATTAAATATATATAT-T
32478655 TTA-ATAT
1 TTATATAT
32478662 GGGTTGGGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
18 6 0.15
19 2 0.05
20 6 0.15
21 6 0.15
22 13 0.32
23 6 0.15
24 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (22 bp):
TTATATATTAAATATATATATT
Found at i:32479785 original size:18 final size:19
Alignment explanation
Indices: 32479764--32479805 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
32479754 GATTTAGAGT
32479764 TTAAAATTT-TTTAATTAA
1 TTAAAATTTATTTAATTAA
*
32479782 TT-AAATTTATTTATTTAA
1 TTAAAATTTATTTAATTAA
32479800 TTAAAA
1 TTAAAA
32479806 ATCTATTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 12 0.57
19 3 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTAAAATTTATTTAATTAA
Found at i:32480000 original size:31 final size:29
Alignment explanation
Indices: 32479931--32480004 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
32479921 ACAAAATAAT
**
32479931 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
32479960 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
32479991 AACAAAAGTGACTA
1 AACATAAGTGACTA
32480005 TTTTTGTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:32483808 original size:14 final size:14
Alignment explanation
Indices: 32483763--32483809 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
32483753 AAGAATTCGA
*
32483763 AAAATATAAAAACT
1 AAAATATATAAACT
*
32483777 AAAAT-TGATTAAATT
1 AAAATAT-A-TAAACT
32483792 AAAATATATAAACT
1 AAAATATATAAACT
32483806 AAAA
1 AAAA
32483810 GAAAAAGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
13 1 0.04
14 15 0.56
15 10 0.37
16 1 0.04
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (14 bp):
AAAATATATAAACT
Found at i:32484394 original size:81 final size:81
Alignment explanation
Indices: 32484254--32484419 Score: 323
Period size: 81 Copynumber: 2.0 Consensus size: 81
32484244 AAAAGAAGGA
*
32484254 GAAATGATTTTATGAAACTGTGATTCCACGTCATCCTTATCTCTTTCCAATAAGAGAATGACAAA
1 GAAAGGATTTTATGAAACTGTGATTCCACGTCATCCTTATCTCTTTCCAATAAGAGAATGACAAA
32484319 TCAACTTTTTCCTCTT
66 TCAACTTTTTCCTCTT
32484335 GAAAGGATTTTATGAAACTGTGATTCCACGTCATCCTTATCTCTTTCCAATAAGAGAATGACAAA
1 GAAAGGATTTTATGAAACTGTGATTCCACGTCATCCTTATCTCTTTCCAATAAGAGAATGACAAA
32484400 TCAACTTTTTCCTCTT
66 TCAACTTTTTCCTCTT
32484416 GAAA
1 GAAA
32484420 AAATTCAAAT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (81 bp):
GAAAGGATTTTATGAAACTGTGATTCCACGTCATCCTTATCTCTTTCCAATAAGAGAATGACAAA
TCAACTTTTTCCTCTT
Found at i:32485209 original size:15 final size:15
Alignment explanation
Indices: 32485191--32485219 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32485181 GATTATTTTT
32485191 AAAAATAATTTAATA
1 AAAAATAATTTAATA
32485206 AAAAATAATTTAAT
1 AAAAATAATTTAAT
32485220 CATATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAAATAATTTAATA
Found at i:32485217 original size:26 final size:26
Alignment explanation
Indices: 32485188--32485258 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 26
32485178 TAGGATTATT
32485188 TTTAAAAATAATTTAATAAAAAATAA
1 TTTAAAAATAATTTAATAAAAAATAA
** * * * *
32485214 TTTAATCATATTTTAAT-ATAATTAT
1 TTTAAAAATAATTTAATAAAAAATAA
*
32485239 TATTAAATATAATTTAATAA
1 T-TTAAAAATAATTTAATAA
32485259 TATTTCAAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
25 6 0.18
26 27 0.79
27 1 0.03
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (26 bp):
TTTAAAAATAATTTAATAAAAAATAA
Found at i:32490269 original size:34 final size:34
Alignment explanation
Indices: 32490224--32490288 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
32490214 ACTGTATACG
* * * *
32490224 TGAACAGTACCGTCTACGTGAATAGTGTCGTGGA
1 TGAACAATACCGTATACGTAAATAGTATCGTGGA
32490258 TGAACAATACCGTATACGTAAATAGTATCGT
1 TGAACAATACCGTATACGTAAATAGTATCGT
32490289 AAACGGTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (34 bp):
TGAACAATACCGTATACGTAAATAGTATCGTGGA
Found at i:32493468 original size:20 final size:20
Alignment explanation
Indices: 32493445--32493487 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
32493435 TTTAGAATCC
32493445 TTTT-TAAATTTTATATAATTT
1 TTTTATAAATTTTA-AT-ATTT
32493466 TTTTATAAATTTTAATATTT
1 TTTTATAAATTTTAATATTT
32493486 TT
1 TT
32493488 AGACTTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 6 0.29
22 9 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTATAAATTTTAATATTT
Found at i:32493553 original size:19 final size:19
Alignment explanation
Indices: 32493526--32493567 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
32493516 AATGAGTAAC
*
32493526 TTTTTAAATATTTTTTAAA
1 TTTTAAAATATTTTTTAAA
32493545 TTTTAAAATATTTTTTAAA
1 TTTTAAAATATTTTTTAAA
32493564 TTTT
1 TTTT
32493568 TATTTTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTAAAATATTTTTTAAA
Found at i:32504534 original size:17 final size:17
Alignment explanation
Indices: 32504509--32504543 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
32504499 ATTGTAATTC
32504509 TTTTTATTAA-AAAATA
1 TTTTTATTAATAAAATA
32504525 TTTTTAATTAATAAAATA
1 TTTTT-ATTAATAAAATA
32504543 T
1 T
32504544 GAATATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTTATTAATAAAATA
Found at i:32506450 original size:26 final size:24
Alignment explanation
Indices: 32506412--32506460 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
32506402 TTGTCATTTG
*
32506412 AAAAGGATTGAAATTTTAAAATTTAA
1 AAAAGGATAGAAA--TTAAAATTTAA
*
32506438 AAAAGTATAGAAATTAAAATTTA
1 AAAAGGATAGAAATTAAAATTTA
32506461 CCAAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
26 11 0.52
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (24 bp):
AAAAGGATAGAAATTAAAATTTAA
Found at i:32506778 original size:24 final size:24
Alignment explanation
Indices: 32506747--32506795 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
32506737 AATTTTTTTA
32506747 AAAAATATCAT-ATAAAACAAATTT
1 AAAAATAT-ATAATAAAACAAATTT
* *
32506771 AAAAATATATAATACATCAAATTT
1 AAAAATATATAATAAAACAAATTT
32506795 A
1 A
32506796 CTAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (24 bp):
AAAAATATATAATAAAACAAATTT
Found at i:32507437 original size:16 final size:16
Alignment explanation
Indices: 32507416--32507449 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32507406 GACTTAAAAG
*
32507416 TTAAAACTAATTATTA
1 TTAAAACTAAATATTA
*
32507432 TTAAAATTAAATATTA
1 TTAAAACTAAATATTA
32507448 TT
1 TT
32507450 GAATTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAACTAAATATTA
Found at i:32507827 original size:20 final size:20
Alignment explanation
Indices: 32507799--32507864 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 20
32507789 AATTATACAG
*
32507799 CAAATGAAAAATAATCCAAC
1 CAAAAGAAAAATAATCCAAC
* * *
32507819 CAAAAG--AAATTATAC-AT
1 CAAAAGAAAAATAATCCAAC
*
32507836 CAAATGAAAAATAATCCAAC
1 CAAAAGAAAAATAATCCAAC
32507856 CAAAAGAAA
1 CAAAAGAAA
32507865 TTATACATCA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 6 0.18
18 7 0.21
19 7 0.21
20 14 0.41
ACGTcount: A:0.62, C:0.17, G:0.06, T:0.15
Consensus pattern (20 bp):
CAAAAGAAAAATAATCCAAC
Found at i:32507829 original size:37 final size:37
Alignment explanation
Indices: 32507787--32507881 Score: 172
Period size: 37 Copynumber: 2.6 Consensus size: 37
32507777 ACAAATATCT
*
32507787 GAAATTATACAGCAAATGAAAAATAATCCAACCAAAA
1 GAAATTATACATCAAATGAAAAATAATCCAACCAAAA
32507824 GAAATTATACATCAAATGAAAAATAATCCAACCAAAA
1 GAAATTATACATCAAATGAAAAATAATCCAACCAAAA
*
32507861 GAAATTATACATCAAACGAAA
1 GAAATTATACATCAAATGAAA
32507882 TTATACATCT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.59, C:0.16, G:0.07, T:0.18
Consensus pattern (37 bp):
GAAATTATACATCAAATGAAAAATAATCCAACCAAAA
Found at i:32507844 original size:17 final size:17
Alignment explanation
Indices: 32507786--32507890 Score: 66
Period size: 17 Copynumber: 5.8 Consensus size: 17
32507776 AACAAATATC
*
32507786 TGAAATTATACAGCAAA
1 TGAAATTATACATCAAA
* * *
32507803 TGAAAAATAATCCAACCAAA
1 TG--AAATTATAC-ATCAAA
*
32507823 AGAAATTATACATCAAA
1 TGAAATTATACATCAAA
* * *
32507840 TGAAAAATAATCCAACCAAA
1 TG--AAATTATAC-ATCAAA
*
32507860 AGAAATTATACATCAAA
1 TGAAATTATACATCAAA
*
32507877 CGAAATTATACATC
1 TGAAATTATACATC
32507891 TACTGTTTGT
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
17 26 0.39
18 14 0.21
19 14 0.21
20 12 0.18
ACGTcount: A:0.56, C:0.16, G:0.07, T:0.21
Consensus pattern (17 bp):
TGAAATTATACATCAAA
Found at i:32508063 original size:8 final size:8
Alignment explanation
Indices: 32508052--32508091 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
32508042 AAGCACTGTC
32508052 GAGTCGTG
1 GAGTCGTG
32508060 GAGTCGTG
1 GAGTCGTG
32508068 GAGTCGT-
1 GAGTCGTG
32508075 G-GTCGTG
1 GAGTCGTG
32508082 GAGTCGTG
1 GAGTCGTG
32508090 GA
1 GA
32508092 TTGGTGGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 5 0.17
7 2 0.07
8 23 0.77
ACGTcount: A:0.12, C:0.12, G:0.50, T:0.25
Consensus pattern (8 bp):
GAGTCGTG
Found at i:32508081 original size:14 final size:14
Alignment explanation
Indices: 32508052--32508090 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 14
32508042 AAGCACTGTC
32508052 GAGTCGTGGAGTCGTG
1 GAGTCGT-G-GTCGTG
32508068 GAGTCGTGGTCGTG
1 GAGTCGTGGTCGTG
32508082 GAGTCGTGG
1 GAGTCGTGG
32508091 ATTGGTGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 15 0.65
15 1 0.04
16 7 0.30
ACGTcount: A:0.10, C:0.13, G:0.51, T:0.26
Consensus pattern (14 bp):
GAGTCGTGGTCGTG
Found at i:32508104 original size:22 final size:22
Alignment explanation
Indices: 32508056--32508113 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
32508046 ACTGTCGAGT
* *
32508056 CGTGGAGTCGTGGAGTCGTGGT
1 CGTGGAGTCGTGGATTCGTGGA
*
32508078 CGTGGAGTCGTGGATTGGTGGA
1 CGTGGAGTCGTGGATTCGTGGA
*
32508100 GGTGGAG--GTGGATT
1 CGTGGAGTCGTGGATT
32508114 TCCGATTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.22
22 25 0.78
ACGTcount: A:0.12, C:0.09, G:0.52, T:0.28
Consensus pattern (22 bp):
CGTGGAGTCGTGGATTCGTGGA
Found at i:32509074 original size:27 final size:27
Alignment explanation
Indices: 32509035--32509110 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 27
32509025 TAGTATTGGC
*
32509035 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
* *
32509062 GCCTATCTAGGAGGCGCCAACGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
32509089 GCCTATCTGGGAGGCGCCAATG
1 GCCTATCTGGGAGGCGCCAATG
32509111 CTTTGATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.17, C:0.24, G:0.38, T:0.21
Consensus pattern (27 bp):
GCCTATCTGGGAGGCGCCAATGGTGGT
Found at i:32509151 original size:19 final size:19
Alignment explanation
Indices: 32509127--32509167 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
32509117 TTTTTTCGGG
*
32509127 TTTAGGGTTATGTTATAAA
1 TTTAGGATTATGTTATAAA
32509146 TTTAGGATTATGTTATAAA
1 TTTAGGATTATGTTATAAA
32509165 TTT
1 TTT
32509168 TTGTGTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (19 bp):
TTTAGGATTATGTTATAAA
Found at i:32509417 original size:19 final size:19
Alignment explanation
Indices: 32509393--32509433 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
32509383 ACAAACACAA
*
32509393 AAATTTATAACATAATCCT
1 AAATTTATAACATAACCCT
32509412 AAATTTATAACATAACCCT
1 AAATTTATAACATAACCCT
32509431 AAA
1 AAA
32509434 CCCGAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATTTATAACATAACCCT
Found at i:32509488 original size:27 final size:27
Alignment explanation
Indices: 32509450--32509513 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
32509440 AAAATCAGAG
32509450 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
*
32509477 CATTGGCGCCTCCTAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
32509504 CATTGGCGCC
1 CATTGGCGCC
32509514 AATACTATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.20, C:0.39, G:0.23, T:0.17
Consensus pattern (27 bp):
CATTGGCGCCTCCCAGATAGGCACCAC
Found at i:32509626 original size:17 final size:17
Alignment explanation
Indices: 32509569--32509627 Score: 66
Period size: 17 Copynumber: 3.3 Consensus size: 17
32509559 AAATTATATT
32509569 TTATTCAAAAAAAATTTA
1 TTATTC-AAAAAAATTTA
*
32509587 TTATTAATAAAAAAATATT-
1 TTATT--CAAAAAAAT-TTA
32509606 TTATTCAAAAAAATTTA
1 TTATTCAAAAAAATTTA
32509623 TTATT
1 TTATT
32509628 TTTTTATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 2 0.06
17 13 0.37
18 5 0.14
19 13 0.37
20 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATTCAAAAAAATTTA
Found at i:32511478 original size:4 final size:4
Alignment explanation
Indices: 32511469--32511509 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
32511459 TGTTTTTTTA
32511469 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
32511510 CATGGAGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Done.