Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 85 of 135
Found at i:32828670 original size:19 final size:19
Alignment explanation
Indices: 32828646--32828703 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
32828636 NNAATATTGT
32828646 AATATTATAATTTTGTATG
1 AATATTATAATTTTGTATG
**
32828665 AATATTGCAATTTTTTTGTATG
1 AATATT---ATAATTTTGTATG
* *
32828687 AATATTGTAATATTGTA
1 AATATTATAATTTTGTA
32828704 ATTTTGTATG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 13 0.43
22 17 0.57
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (19 bp):
AATATTATAATTTTGTATG
Found at i:32828684 original size:22 final size:22
Alignment explanation
Indices: 32828656--32828730 Score: 78
Period size: 22 Copynumber: 3.2 Consensus size: 22
32828646 AATATTATAA
*
32828656 TTTTGTATGAATATTGCAATTT
1 TTTTGTATGAATATTGAAATTT
32828678 TTTTGTATGAATATTGTAATATTGT
1 TTTTGTATGAATATTG-AA-ATT-T
* *
32828703 AATTTTGTATGAATATTGTAATTA
1 --TTTTGTATGAATATTGAAATTT
32828727 TTTT
1 TTTT
32828731 ATAATTAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
22 20 0.44
23 1 0.02
24 3 0.07
25 4 0.09
26 1 0.02
27 16 0.36
ACGTcount: A:0.29, C:0.01, G:0.13, T:0.56
Consensus pattern (22 bp):
TTTTGTATGAATATTGAAATTT
Found at i:32828717 original size:19 final size:19
Alignment explanation
Indices: 32828646--32828725 Score: 68
Period size: 19 Copynumber: 4.6 Consensus size: 19
32828636 NNAATATTGT
*
32828646 AATATTATAATTTTGTATG
1 AATATTGTAATTTTGTATG
* *
32828665 AATATTGCAATTTT-TTTG
1 AATATTGTAATTTTGTATG
*
32828683 --TA-TG-AATATTG--T-
1 AATATTGTAATTTTGTATG
32828695 AATATTGTAATTTTGTATG
1 AATATTGTAATTTTGTATG
32828714 AATATTGTAATT
1 AATATTGTAATT
32828726 ATTTTATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
13 1 0.02
14 7 0.15
15 4 0.08
16 8 0.17
18 4 0.08
19 24 0.50
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.53
Consensus pattern (19 bp):
AATATTGTAATTTTGTATG
Found at i:32829044 original size:27 final size:27
Alignment explanation
Indices: 32828777--32829033 Score: 469
Period size: 27 Copynumber: 9.5 Consensus size: 27
32828767 ATATTTTGTT
* *
32828777 CACCATTGGCGCCTCCCAAATAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
* * *
32828804 CACCATTGGTGCCTCCCAAATAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32828831 CACCATTGGCGCCTCCGAAGTAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32828858 CACCATTGGCGCCTCCGAAGTAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32828885 CACCATTGGCGCCTCCGAAGTAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32828912 CACCATTGGCGCCTCCGAAGTAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32828939 CACCATTGGCGCCTCCGAAGTAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32828966 CACCATTGGCGCCTCCGAAGTAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32828993 CACCATTGGCGCCTCCGAAGTAGGCAC
1 CACCATTGGCGCCTCCGAAGTAGGCAC
32829020 CACCATTGGCGCCT
1 CACCATTGGCGCCT
32829034 TCCAGATAGG
Statistics
Matches: 226, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 226 1.00
ACGTcount: A:0.23, C:0.38, G:0.24, T:0.16
Consensus pattern (27 bp):
CACCATTGGCGCCTCCGAAGTAGGCAC
Found at i:32838497 original size:21 final size:23
Alignment explanation
Indices: 32838454--32838500 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
32838444 AAACTATATT
*
32838454 AAATTATTAATTTTTAAGGATAA
1 AAATAATTAATTTTTAAGGATAA
*
32838477 AAATAATT-ATTTTTAA-TATAA
1 AAATAATTAATTTTTAAGGATAA
32838498 AAA
1 AAA
32838501 GTATTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 8 0.36
23 7 0.32
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (23 bp):
AAATAATTAATTTTTAAGGATAA
Found at i:32842824 original size:30 final size:30
Alignment explanation
Indices: 32842768--32842824 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
32842758 AAATTTCAAA
* *
32842768 TCTTTTTAAAGGTTGATGGTTAAATTTGAC
1 TCTTTTTAAAGGTCGATGGGTAAATTTGAC
*
32842798 TCTTTTTAAAAGGTCGA-GGGTCAATTT
1 TCTTTTT-AAAGGTCGATGGGTAAATTT
32842825 AGCTATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 15 0.65
31 8 0.35
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (30 bp):
TCTTTTTAAAGGTCGATGGGTAAATTTGAC
Found at i:32844640 original size:5 final size:5
Alignment explanation
Indices: 32844630--32844665 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
32844620 TTGGATTATT
32844630 AATTA AATTA AATTA AATTA AATTA AATTA AATTA A
1 AATTA AATTA AATTA AATTA AATTA AATTA AATTA A
32844666 TAAATAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATTA
Found at i:32847209 original size:33 final size:34
Alignment explanation
Indices: 32847156--32847223 Score: 129
Period size: 33 Copynumber: 2.0 Consensus size: 34
32847146 AAAAAAACGC
32847156 CGCTAATAGTAGTGTTATTTAGCGGCGCTTATTT
1 CGCTAATAGTAGTGTTATTTAGCGGCGCTTATTT
32847190 CGCTAATAGT-GTGTTATTTAGCGGCGCTTATTT
1 CGCTAATAGTAGTGTTATTTAGCGGCGCTTATTT
32847223 C
1 C
32847224 ACAAACGCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 24 0.71
34 10 0.29
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.41
Consensus pattern (34 bp):
CGCTAATAGTAGTGTTATTTAGCGGCGCTTATTT
Found at i:32850986 original size:9 final size:8
Alignment explanation
Indices: 32850963--32851034 Score: 50
Period size: 7 Copynumber: 9.4 Consensus size: 8
32850953 TTAAAGAGCG
32850963 TATAAT-T
1 TATAATAT
32850970 TA-AATAT
1 TATAATAT
32850977 TATCAATATT
1 TAT-AATA-T
32850987 GTATAAT-T
1 -TATAATAT
32850995 TA-AATAT
1 TATAATAT
32851002 TATCAATAT
1 TAT-AATAT
*
32851011 T-TAAAAT
1 TATAATAT
32851018 TATAA-AT
1 TATAATAT
32851025 TATAA-AT
1 TATAATAT
32851032 TAT
1 TAT
32851035 TTATATTATT
Statistics
Matches: 55, Mismatches: 1, Indels: 18
0.74 0.01 0.24
Matches are distributed among these distances:
6 6 0.11
7 27 0.49
8 5 0.09
9 10 0.18
10 4 0.07
11 3 0.05
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (8 bp):
TATAATAT
Found at i:32850991 original size:25 final size:25
Alignment explanation
Indices: 32850962--32851024 Score: 101
Period size: 25 Copynumber: 2.5 Consensus size: 25
32850952 CTTAAAGAGC
32850962 GTATAATTTAAATATTATCAATATT
1 GTATAATTTAAATATTATCAATATT
32850987 GTATAATTTAAATATTATCAATATT
1 GTATAATTTAAATATTATCAATATT
*
32851012 -TAAAATTATAAAT
1 GTATAATT-TAAAT
32851025 TATAAATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 6 0.17
25 30 0.83
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (25 bp):
GTATAATTTAAATATTATCAATATT
Found at i:32851447 original size:21 final size:22
Alignment explanation
Indices: 32851421--32851475 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
32851411 TAAAGCAGTC
*
32851421 TAAACCCCAAAC-CCCAAATCT
1 TAAACCCCAAACTCCCAAACCT
*
32851442 TAAACCCCAAACTCCTAAACCT
1 TAAACCCCAAACTCCCAAACCT
*
32851464 TAAACCCAAAAC
1 TAAACCCCAAAC
32851476 ACCATAACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.45, C:0.40, G:0.00, T:0.15
Consensus pattern (22 bp):
TAAACCCCAAACTCCCAAACCT
Found at i:32851448 original size:14 final size:15
Alignment explanation
Indices: 32851429--32851462 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
32851419 TCTAAACCCC
*
32851429 AAACCCCAAA-TCTT
1 AAACCCCAAACTCCT
32851443 AAACCCCAAACTCCT
1 AAACCCCAAACTCCT
32851458 AAACC
1 AAACC
32851463 TTAAACCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (15 bp):
AAACCCCAAACTCCT
Found at i:32851468 original size:22 final size:21
Alignment explanation
Indices: 32851421--32851484 Score: 74
Period size: 22 Copynumber: 3.0 Consensus size: 21
32851411 TAAAGCAGTC
*
32851421 TAAACCCCAAACCCCAAATCT
1 TAAACCCCAAACCCCAAACCT
*
32851442 TAAACCCCAAACTCCTAAACCT
1 TAAACCCCAAAC-CCCAAACCT
* *
32851464 TAAACCCAAAACACCATAACC
1 TAAACCCCAAACCCCA-AACC
32851485 CACATCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 14 0.39
22 22 0.61
ACGTcount: A:0.45, C:0.41, G:0.00, T:0.14
Consensus pattern (21 bp):
TAAACCCCAAACCCCAAACCT
Found at i:32852082 original size:114 final size:111
Alignment explanation
Indices: 32851922--32852374 Score: 353
Period size: 114 Copynumber: 4.0 Consensus size: 111
32851912 TTCGGTTAAT
* * *
32851922 ATATCTTGCGGCACTTCTAAGAAAGCGCCGCTAATAGTATACTTTAGCGGCGTTTTCCAATAAGC
1 ATATCTTGCGGCGCTTCT-CGAAAGCGCCGCTAATAGTATA-TTTAGCGGCGTTTTCC-GTAAGC
*
32851987 GCCACTAATTCTAATATACCTCAATACCAAACTCTACGTTTTGGTGTGC
63 GCCACTAATTCTAATATACCTCAAGACCAAACTCTACGTTTTGGTGTGC
* * * **
32852036 ATATCTTGCGGCGCTTAACT-GAAAGCGCTGCTAATACTGATATTTAGCGACGTTTTATTGTAAG
1 ATATCTTGCGGCGCTT--CTCGAAAGCGCCGCTAATAGT-ATATTTAGCGGCGTTTT-CCGTAAG
* * * *
32852100 CGCCACTAATTATATTATACATGAAGACCAAAACGT-TGA-GTTTTGGT-TAAG-
62 CGCCACTAATTCTAATATACCTCAAGACC-AAAC-TCT-ACGTTTTGGTGT--GC
* * * * * * *
32852151 AAATATAGCGGCACTTCTCCAAACGCGCCGCTAATAGTACTCTTTAGTGGCGTTTTTCCGTAAGC
1 ATATCTTGCGGCGCTTCTCGAAA-GCGCCGCTAATAGTA-TATTTAGCGGCG-TTTTCCGTAAGC
* * *
32852216 GCCACTAATCCTAATATACCTTAAGACCAAACTCTGCGTTTTGGTGTGC
63 GCCACTAATTCTAATATACCTCAAGACCAAACTCTACGTTTTGGTGTGC
* ** * ** *
32852265 ATATCTTGCGGCGATTCTAAAAAATCGCCGCTAATTTTATACTTTAGCGGCGTTTTTAAC-TAA-
1 ATATCTTGCGGCGCTTCT-CGAAAGCGCCGCTAATAGTATA-TTTAGCGGCG-TTTT-CCGTAAG
* * * * * *
32852328 CGCCACTAATTGTATTATACATCGAGACCAAACCGCTACGCTTTGGT
62 CGCCACTAATTCTAATATACCTCAAGACCAAA-CTCTACGTTTTGGT
32852375 TAACATTTTT
Statistics
Matches: 266, Mismatches: 52, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
113 31 0.12
114 143 0.54
115 83 0.31
116 9 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (111 bp):
ATATCTTGCGGCGCTTCTCGAAAGCGCCGCTAATAGTATATTTAGCGGCGTTTTCCGTAAGCGCC
ACTAATTCTAATATACCTCAAGACCAAACTCTACGTTTTGGTGTGC
Found at i:32852313 original size:229 final size:227
Alignment explanation
Indices: 32851929--32852359 Score: 561
Period size: 229 Copynumber: 1.9 Consensus size: 227
32851919 AATATATCTT
32851929 GCGGCACTTCTAAGAAAGCGCCGCTAATAGTATACTTTAGCGGCGTTTTCCAATAAGCGCCACTA
1 GCGGCACTTCTAAGAAAGCGCCGCTAATAGTATACTTTAGCGGCGTTTTCCAATAAGCGCCACTA
* * *
32851994 ATTCTAATATACCTCAATACCAAACTCTACGTTTTGGTGTGCATATCTTGCGGCGCTTAACTGAA
66 ATCCTAATATACCTCAAGACCAAACTCTACGTTTTGGTGTGCATATCTTGCGGCGCTTAAC-AAA
* **
32852059 AGCGCTGCTAATACTGATATTTAGCGACG-TTTTATTGTAAGCGCCACTAATTATATTATACAT-
130 AGCGCCGCTAATACTGATATTTAGCGACGTTTTTA-ACTAA-CGCCACTAATTATATTATACATC
32852122 GAAGACCAAAACGTTGAGTTTTGGTTAAGAAATATA
193 G-AGACCAAAACGTTGAGTTTTGGTTAAGAAATATA
* * * *
32852158 GCGGCACTTCTCCA-AACGCGCCGCTAATAGTACT-CTTTAGTGGCGTTTTTCC-GTAAGCGCCA
1 GCGGCACTTCT-AAGAAAGCGCCGCTAATAGTA-TACTTTAGCGGCG-TTTTCCAATAAGCGCCA
* * *
32852220 CTAATCCTAATATACCTTAAGACCAAACTCTGCGTTTTGGTGTGCATATCTTGCGGCGATTCTAA
63 CTAATCCTAATATACCTCAAGACCAAACTCTACGTTTTGGTGTGCATATCTTGCGGCG-CT-TAA
* * * * *
32852285 -AAAATCGCCGCTAAT-TTTATACTTTAGCGGCGTTTTTAACTAACGCCACTAATTGTATTATAC
126 CAAAAGCGCCGCTAATACTGATA-TTTAGCGACGTTTTTAACTAACGCCACTAATTATATTATAC
32852348 ATCGAGACCAAA
190 ATCGAGACCAAA
32852360 CCGCTACGCT
Statistics
Matches: 176, Mismatches: 18, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
228 33 0.19
229 126 0.72
230 14 0.08
231 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (227 bp):
GCGGCACTTCTAAGAAAGCGCCGCTAATAGTATACTTTAGCGGCGTTTTCCAATAAGCGCCACTA
ATCCTAATATACCTCAAGACCAAACTCTACGTTTTGGTGTGCATATCTTGCGGCGCTTAACAAAA
GCGCCGCTAATACTGATATTTAGCGACGTTTTTAACTAACGCCACTAATTATATTATACATCGAG
ACCAAAACGTTGAGTTTTGGTTAAGAAATATA
Found at i:32852487 original size:75 final size:75
Alignment explanation
Indices: 32852326--32852487 Score: 189
Period size: 75 Copynumber: 2.2 Consensus size: 75
32852316 GTTTTTAACT
* * * * *
32852326 AACGCCACTAATTGTATTATACATCGAGACCAAACCGCTACGCTTTGGTTAACATTTTTTGCGGC
1 AACGCCACTAATTCTAATATACATCAAGACCAAAACGCTACGCTTTGGTTAACATATTTTGCGGC
*
32852391 ACTTCTATTA
66 ACTTCTAGTA
* * * * * *
32852401 AGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCGGC
1 AACGCCACTAATTCTAATATACATCAAGACCAAAACGCTACGCTTTGGTTAACATATTTTGCGGC
* *
32852466 GCTTTTAGTA
66 ACTTCTAGTA
*
32852476 AACGCCGCTAAT
1 AACGCCACTAAT
32852488 ACTTGTTTTA
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (75 bp):
AACGCCACTAATTCTAATATACATCAAGACCAAAACGCTACGCTTTGGTTAACATATTTTGCGGC
ACTTCTAGTA
Found at i:32852535 original size:113 final size:113
Alignment explanation
Indices: 32852399--32852760 Score: 706
Period size: 113 Copynumber: 3.2 Consensus size: 113
32852389 GCACTTCTAT
32852399 TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCG
1 TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCG
* *
32852464 GCGCTTTTAGTAAACGCCGCTAATACTTGTTTTACTGGCGTTTTTTTG
66 GCGCTTTTAGTAAACACCGCTAATACTTGTTTTACTGGCCTTTTTTTG
32852512 TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCG
1 TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCG
32852577 GCGCTTTTAGTAAACACCGCTAATACTTGTTTTACTGGCCTTTTTTTG
66 GCGCTTTTAGTAAACACCGCTAATACTTGTTTTACTGGCCTTTTTTTG
32852625 TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCG
1 TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCG
32852690 GCGCTTTTAGTAAACACCGCTAATACTTGTTTTACTGGCCTTTTTTTG
66 GCGCTTTTAGTAAACACCGCTAATACTTGTTTTACTGGCCTTTTTTTG
32852738 TAAGCGCCACTAATTCTAATATA
1 TAAGCGCCACTAATTCTAATATA
32852761 TTTAGTGGCA
Statistics
Matches: 247, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 247 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (113 bp):
TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCG
GCGCTTTTAGTAAACACCGCTAATACTTGTTTTACTGGCCTTTTTTTG
Found at i:32852537 original size:188 final size:187
Alignment explanation
Indices: 32852211--32852578 Score: 429
Period size: 188 Copynumber: 2.0 Consensus size: 187
32852201 CGTTTTTCCG
* * *
32852211 TAAGCGCCACTAATCCTAATATACCTTAAGACCAAACTCTGCGTTTTGGTGTGCATATCTTGCGG
1 TAAGCGCCACTAATCCTAATATACATCAAGACAAAACTCTGCGTTTTGGTGTGCATATCTTGCGG
* *
32852276 CGATTCTAAAAAATCGCCGCTAATTTTATACTTTAGCGGCGTTTTTAACTAACGCCACTAATTGT
66 CGATTCTAAAAAATCGCCGCTAATCTTATA-TTTAGCGGCGTTTTTAACTAACGCCACTAATTCT
* * * *
32852341 ATTATACATCGAGACCAAACCGCTACGCTTTGGTTAACATTTTTTGCGGCACTTCTAT
130 AATATACATCAAGACCAAAACGCTACGCTTTGGTTAACATATTTTGCGGCACTTCTAT
* * *
32852399 TAAGCGCCACTAATTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGT-TATCATATTTTGC
1 TAAGCGCCACTAATCCTAATATACATCAAGA-CAAAACTCTGCGTTTTGGTGT-GCATATCTTGC
* * ** * ***
32852463 GGCGCTTTTAGTAAA-CGCCGCTAATACTTGT-TTTA-CTGGCGTTTTTTTGTAAGCGCCACTAA
64 GGCGATTCTAAAAAATCGCCGCTAAT-CTTATATTTAGC-GGCGTTTTTAACTAA-CGCCACTAA
* * * * *
32852525 TTCTAATATACATCAAGATCAAAACTCTGCGTTTTGGTTATCATATTTTGCGGC
126 TTCTAATATACATCAAGACCAAAACGCTACGCTTTGGTTAACATATTTTGCGGC
32852579 GCTTTTAGTA
Statistics
Matches: 150, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
186 1 0.01
187 16 0.11
188 92 0.61
189 41 0.27
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (187 bp):
TAAGCGCCACTAATCCTAATATACATCAAGACAAAACTCTGCGTTTTGGTGTGCATATCTTGCGG
CGATTCTAAAAAATCGCCGCTAATCTTATATTTAGCGGCGTTTTTAACTAACGCCACTAATTCTA
ATATACATCAAGACCAAAACGCTACGCTTTGGTTAACATATTTTGCGGCACTTCTAT
Found at i:32853691 original size:26 final size:25
Alignment explanation
Indices: 32853621--32853691 Score: 67
Period size: 26 Copynumber: 2.9 Consensus size: 25
32853611 GAATTATGAA
*
32853621 AATATTATTGTATAAATAAAA-TTAG
1 AATA-TATTGTAAAAATAAAATTTAG
* **
32853646 AA-ATA-TATAAAAATGGAATTTATG
1 AATATATTGTAAAAATAAAATTTA-G
32853670 AATATATTGTAAAAATAAAATT
1 AATATATTGTAAAAATAAAATT
32853692 ATAAAAATGT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
22 9 0.26
23 5 0.14
24 4 0.11
25 5 0.14
26 12 0.34
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (25 bp):
AATATATTGTAAAAATAAAATTTAG
Found at i:32853784 original size:21 final size:21
Alignment explanation
Indices: 32853754--32853793 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32853744 TAATTGAATA
* *
32853754 AATAATAATACATGATAAAGG
1 AATAAAAATACATAATAAAGG
32853775 AATAAAAATACATAATAAA
1 AATAAAAATACATAATAAA
32853794 ATAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (21 bp):
AATAAAAATACATAATAAAGG
Found at i:32853858 original size:12 final size:12
Alignment explanation
Indices: 32853842--32853877 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
32853832 AATAACATCT
32853842 ATAATAATAGTA
1 ATAATAATAGTA
*
32853854 GTAATAATAGTA
1 ATAATAATAGTA
32853866 ATAATAATAGTA
1 ATAATAATAGTA
32853878 TTATAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (12 bp):
ATAATAATAGTA
Found at i:32864050 original size:36 final size:36
Alignment explanation
Indices: 32864003--32864074 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
32863993 CTTGGCTTTA
32864003 GACACCAAAACCAAGACTTAGTTTAGCTGCATTTGT
1 GACACCAAAACCAAGACTTAGTTTAGCTGCATTTGT
*
32864039 GACACCAAAACCAAGACTTAGTTTCGCTGCATTTGT
1 GACACCAAAACCAAGACTTAGTTTAGCTGCATTTGT
32864075 ACCACGACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (36 bp):
GACACCAAAACCAAGACTTAGTTTAGCTGCATTTGT
Found at i:32867479 original size:3 final size:3
Alignment explanation
Indices: 32867473--32867498 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32867463 AATAATAATT
32867473 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
32867499 GGTCTACGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32870278 original size:45 final size:45
Alignment explanation
Indices: 32870165--32870516 Score: 390
Period size: 45 Copynumber: 7.9 Consensus size: 45
32870155 GGATTTATTG
* * * * * *
32870165 CTTCAATCTACTTCACT-CTAACTTTAGGGAGATTAGACTTG-TAG
1 CTTCAATCTGCTCCACTGC-AACTTCAGGGAGATAAGATTTGCTAT
* *
32870209 CTTTAATCTGCTCCACTGCTACTTCAGGGAGATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * **
32870254 CTTCAAT-TCACTCCACTACAACTTCAGGGAGATAAGATTTATTAT
1 CTTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* *
32870299 CTTCAATCTGCTCCACTGCCACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* *
32870344 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* *
32870389 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * * **
32870434 CTTCAAACTACTTCAATGCAACTTCAGGGAGATAAGATTTG-TGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * **
32870478 CTT-AAACTTGCTCTACTGCAACTTCAGAAAGATAAGATT
1 CTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATT
32870517 CGCCATGCTG
Statistics
Matches: 261, Mismatches: 42, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
43 4 0.02
44 62 0.24
45 194 0.74
46 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
Found at i:32877174 original size:41 final size:40
Alignment explanation
Indices: 32877117--32877205 Score: 160
Period size: 41 Copynumber: 2.2 Consensus size: 40
32877107 TGTAGGCCAT
32877117 TTTGCCCAGGCCCAATTACAACCCAAACCCAAACTAAAAA
1 TTTGCCCAGGCCCAATTACAACCCAAACCCAAACTAAAAA
32877157 CTTTGCCCAGGCCCAATTACAACCCAAACCCAAACTAAAAA
1 -TTTGCCCAGGCCCAATTACAACCCAAACCCAAACTAAAAA
*
32877198 TTAGCCCA
1 TTTGCCCA
32877206 AAACCCTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 7 0.15
41 40 0.85
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (40 bp):
TTTGCCCAGGCCCAATTACAACCCAAACCCAAACTAAAAA
Found at i:32877221 original size:40 final size:41
Alignment explanation
Indices: 32877127--32877223 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
32877117 TTTGCCCAGG
* **
32877127 CCCAATTACAACCCAAACCCAAACTAAAAACTTTGCCCAGG
1 CCCAATTACAACCCAAACCCAAACTAAAAACTTAGCCCAAA
32877168 CCCAATTACAACCCAAACCCAAACTAAAAA-TTAGCCCAAAA
1 CCCAATTACAACCCAAACCCAAACTAAAAACTTAGCCC-AAA
*
32877209 CCCTATTA-AACCCAA
1 CCCAATTACAACCCAA
32877224 GCCCGGAGCC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 13 0.25
41 38 0.75
ACGTcount: A:0.45, C:0.36, G:0.04, T:0.14
Consensus pattern (41 bp):
CCCAATTACAACCCAAACCCAAACTAAAAACTTAGCCCAAA
Found at i:32877589 original size:22 final size:21
Alignment explanation
Indices: 32877564--32877605 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32877554 CGGCTGGAAA
32877564 AAGAACACAAAAAAACAGTTTC
1 AAGAA-ACAAAAAAACAGTTTC
*
32877586 AAGAAATAAAAAAACAGTTT
1 AAGAAACAAAAAAACAGTTT
32877606 AAAAGGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.62, C:0.12, G:0.10, T:0.17
Consensus pattern (21 bp):
AAGAAACAAAAAAACAGTTTC
Found at i:32897858 original size:169 final size:169
Alignment explanation
Indices: 32897579--32897919 Score: 637
Period size: 169 Copynumber: 2.0 Consensus size: 169
32897569 TTTCGCTGCC
32897579 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
1 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
*
32897644 CGTAATTCTATCAGGTGTCATGTTGGTCACATGGCTGTATTGTTTCATTAAAGCCTGTACCAGGT
66 CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTGTATTGTTTCATTAAAGCCTGTACCAGGT
*
32897709 CTTTCCATGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
131 CTTTCCACGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
32897748 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
1 ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
* **
32897813 CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTGTATTGTTTCTTTAAAGCCTGTGTCAGGT
66 CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTGTATTGTTTCATTAAAGCCTGTACCAGGT
32897878 CTTTCCACGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
131 CTTTCCACGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
32897917 ACC
1 ACC
32897920 ACTTGGTGAC
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
169 167 1.00
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (169 bp):
ACCTCTCTCCATCTTTGAACGTACTACTTAAAGCTTTCACTTGGCTTCTTTTCCATGTTTTGCAA
CGTAATTCTATCAGGTGTCATATTGGTCACATGGCTGTATTGTTTCATTAAAGCCTGTACCAGGT
CTTTCCACGAGTTGATTTTAGCACGGCTTAGTTAGTTGT
Found at i:32905547 original size:70 final size:70
Alignment explanation
Indices: 32905429--32905604 Score: 334
Period size: 70 Copynumber: 2.5 Consensus size: 70
32905419 TTGCATGCCC
* *
32905429 AACAGCACCTTAAATACATGTCTATGCTTTACATTAAATTCGGCCAACACCTCCTTTATTGCTGC
1 AACATCACCTTAAATGCATGTCTATGCTTTACATTAAATTCGGCCAACACCTCCTTTATTGCTGC
32905494 TGTTG
66 TGTTG
32905499 AACATCACCTTAAATGCATGTCTATGCTTTACATTAAATTCGGCCAACACCTCCTTTATTGCTGC
1 AACATCACCTTAAATGCATGTCTATGCTTTACATTAAATTCGGCCAACACCTCCTTTATTGCTGC
32905564 TGTTG
66 TGTTG
32905569 AACATCACCTTAAATGCATGTCTATGCTTTACATTA
1 AACATCACCTTAAATGCATGTCTATGCTTTACATTA
32905605 TTTATAACAT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 104 1.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (70 bp):
AACATCACCTTAAATGCATGTCTATGCTTTACATTAAATTCGGCCAACACCTCCTTTATTGCTGC
TGTTG
Found at i:32912462 original size:18 final size:19
Alignment explanation
Indices: 32912435--32912472 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
32912425 CTTACACGCG
32912435 GACGACGACGACAA-TGAT
1 GACGACGACGACAACTGAT
*
32912453 GACGAGGACGACAACTGAT
1 GACGACGACGACAACTGAT
32912472 G
1 G
32912473 TATATTCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.37, C:0.21, G:0.32, T:0.11
Consensus pattern (19 bp):
GACGACGACGACAACTGAT
Found at i:32916195 original size:20 final size:20
Alignment explanation
Indices: 32916170--32916212 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
32916160 ATTTAGATTT
*
32916170 ATTTAAAATAAAAATATAAA
1 ATTTAAAATAAAAATAAAAA
*
32916190 ATTTAAATTAAAAATAAAAA
1 ATTTAAAATAAAAATAAAAA
32916210 ATT
1 ATT
32916213 AAATATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTAAAATAAAAATAAAAA
Found at i:32916684 original size:29 final size:30
Alignment explanation
Indices: 32916652--32916717 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
32916642 TTTTCTAAAA
*
32916652 TTTAAATATATTTTTTAAAATTTT-GAATT
1 TTTAAATATATATTTTAAAATTTTAGAATT
* * *
32916681 TTTATATTTATATTTTAGAATTTTAGAATT
1 TTTAAATATATATTTTAAAATTTTAGAATT
32916711 TTATAAA
1 TT-TAAA
32916718 AAATTGAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 20 0.67
30 7 0.23
31 3 0.10
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.58
Consensus pattern (30 bp):
TTTAAATATATATTTTAAAATTTTAGAATT
Found at i:32916903 original size:31 final size:30
Alignment explanation
Indices: 32916837--32916907 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 30
32916827 CTTCTCCTAA
* **
32916837 ATTGGTACTTATAATTTTTTTTTGTCCCAG
1 ATTGGTACCTATAATTTTTTTCCGTCCCAG
32916867 ATTGGTACCTA-AATTTTTTTCCGTCCACTAG
1 ATTGGTACCTATAATTTTTTTCCGTCC-C-AG
*
32916898 TTTGGTACCT
1 ATTGGTACCT
32916908 GAGCCTAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.37
30 11 0.31
31 11 0.31
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTGGTACCTATAATTTTTTTCCGTCCCAG
Found at i:32918853 original size:33 final size:32
Alignment explanation
Indices: 32918798--32919024 Score: 90
Period size: 33 Copynumber: 6.8 Consensus size: 32
32918788 ACGTTCATAG
* *
32918798 TGCCATAACAC-AATTATAGTCTTATCATTAGAA
1 TGCCATAAC-CTAACTATGGTCTTATCATTA-AA
*
32918831 TGCCATAACCTAGCTATGGTCTTA-CATGTATACA
1 TGCCATAACCTAACTATGGTCTTATCAT-TA-A-A
*** *
32918865 CTGCCATGGTCTAACCATGGTCTTATGTCCATT--A
1 -TGCCATAACCTAACTATGGTCTTA--T-CATTAAA
**
32918899 TGCCATAACCTAGTTATGGTCTTA-CATGTATACA
1 TGCCATAACCTAACTATGGTCTTATCAT-TA-A-A
*** *
32918933 CTGCCATGGTCTAACCATGGTCTTATGTCCATT--A
1 -TGCCATAACCTAACTATGGTCTTA--T-CATTAAA
*** *
32918967 TGCCATAACCTGGTTATGGTCTTATCATCAGAA
1 TGCCATAACCTAACTATGGTCTTATCATTA-AA
*
32919000 TGCCATAGCCTAACTATGGTCTTAT
1 TGCCATAACCTAACTATGGTCTTAT
32919025 AATTTCATAG
Statistics
Matches: 140, Mismatches: 33, Indels: 42
0.65 0.15 0.20
Matches are distributed among these distances:
29 3 0.02
30 4 0.03
31 1 0.01
32 4 0.03
33 79 0.56
34 4 0.03
35 37 0.26
38 2 0.01
39 6 0.04
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (32 bp):
TGCCATAACCTAACTATGGTCTTATCATTAAA
Found at i:32918885 original size:35 final size:35
Alignment explanation
Indices: 32918846--32918957 Score: 115
Period size: 35 Copynumber: 3.3 Consensus size: 35
32918836 TAACCTAGCT
32918846 ATGGTCTTACATGTATACACTGCCATGGTCTAACC
1 ATGGTCTTACATGTATACACTGCCATGGTCTAACC
* *** ***
32918881 ATGGTCTT--ATGTCCAT-TA-TGCCATAACCTAGTT
1 ATGGTCTTACATGT--ATACACTGCCATGGTCTAACC
32918914 ATGGTCTTACATGTATACACTGCCATGGTCTAACC
1 ATGGTCTTACATGTATACACTGCCATGGTCTAACC
32918949 ATGGTCTTA
1 ATGGTCTTA
32918958 TGTCCATTAT
Statistics
Matches: 57, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
33 23 0.40
34 2 0.04
35 32 0.56
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (35 bp):
ATGGTCTTACATGTATACACTGCCATGGTCTAACC
Found at i:32918890 original size:68 final size:66
Alignment explanation
Indices: 32918830--32918990 Score: 259
Period size: 68 Copynumber: 2.4 Consensus size: 66
32918820 TATCATTAGA
32918830 ATGCCATAACCTAGCTATGGTCTTACATGTATACACTGCCATGGTCTAACCATGGTCTTATGTCC
1 ATGCCATAACCTAGCTATGGTCTTACATGTATACACTGCCATGGTCTAACCATGGTCTTA--TCC
32918895 ATT
64 ATT
*
32918898 ATGCCATAACCTAGTTATGGTCTTACATGTATACACTGCCATGGTCTAACCATGGTCTTATGTCC
1 ATGCCATAACCTAGCTATGGTCTTACATGTATACACTGCCATGGTCTAACCATGGTCTTA--TCC
32918963 ATT
64 ATT
* *
32918966 ATGCCATAACCTGGTTATGGTCTTA
1 ATGCCATAACCTAGCTATGGTCTTA
32918991 TCATCAGAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 91 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (66 bp):
ATGCCATAACCTAGCTATGGTCTTACATGTATACACTGCCATGGTCTAACCATGGTCTTATCCAT
T
Found at i:32923810 original size:15 final size:15
Alignment explanation
Indices: 32923792--32923838 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
32923782 AAGTTTTTTA
32923792 ATTTTATTATTAAAC
1 ATTTTATTATTAAAC
* *
32923807 ATTTTACTCTTAAAC
1 ATTTTATTATTAAAC
*
32923822 ATTTTCCTTATTAAAC
1 ATTTT-ATTATTAAAC
32923838 A
1 A
32923839 CTTGTCCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 18 0.69
16 8 0.31
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTTATTATTAAAC
Found at i:32923837 original size:16 final size:16
Alignment explanation
Indices: 32923798--32923851 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
32923788 TTTAATTTTA
*
32923798 TTATTAAACATTTTAC
1 TTATTAAACATTTTCC
*
32923814 -TCTTAAACATTTTCC
1 TTATTAAACATTTTCC
*
32923829 TTATTAAACACTTGTCC
1 TTATTAAACA-TTTTCC
32923846 TT-TTAA
1 TTATTAA
32923852 TTTTATTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 13 0.41
16 12 0.38
17 7 0.22
ACGTcount: A:0.31, C:0.19, G:0.02, T:0.48
Consensus pattern (16 bp):
TTATTAAACATTTTCC
Found at i:32925638 original size:50 final size:50
Alignment explanation
Indices: 32925523--32925764 Score: 286
Period size: 50 Copynumber: 4.7 Consensus size: 50
32925513 ACATGCCGAA
* ** * * ***
32925523 GCCATGTCCCAGACATGGTCTTACATGAGATGTTCTTATATCGGTGCCCGT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAAC
**
32925574 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
*
32925624 GCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* *
32925674 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATGATCTCAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG-TGCCAAC
* *
32925730 GCCATTTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32925765 TTACCCAAAT
Statistics
Matches: 166, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
50 94 0.57
51 27 0.16
53 5 0.03
55 2 0.01
56 38 0.23
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
Found at i:32927468 original size:19 final size:20
Alignment explanation
Indices: 32927439--32927477 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
32927429 TTCAAAGTTT
*
32927439 CCATAATAGGTATCGATACC
1 CCATAATAGGTACCGATACC
32927459 CCAT-ATAGGTACCGATACC
1 CCATAATAGGTACCGATACC
32927478 ATTTAAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (20 bp):
CCATAATAGGTACCGATACC
Found at i:32930216 original size:27 final size:26
Alignment explanation
Indices: 32930186--32930240 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
32930176 AGAAATTTGC
*
32930186 TAAGCAACTC-AATGTTTAGTACACATA
1 TAAGCAACTCGAATGCTTA--ACACATA
*
32930213 TAAGCACCTCGAATGCTTAACACATA
1 TAAGCAACTCGAATGCTTAACACATA
32930239 TA
1 TA
32930241 CAATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.36
27 9 0.36
28 7 0.28
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (26 bp):
TAAGCAACTCGAATGCTTAACACATA
Found at i:32932894 original size:43 final size:42
Alignment explanation
Indices: 32932817--32932987 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 42
32932807 CATAGGATTT
* *
32932817 TCGATATGTG-TTATCGTGTAAAACCACGTCTGGGACGTTGGCA
1 TCGAT-TGTGATTA-CGTGTAAGACCACGTCTGGGACATTGGCA
* * *
32932860 TCGACTTGTGTTTACGTGTAAGACCATGTTTGGGACATTGGCA
1 TCGA-TTGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* *
32932903 TTGTATT-TGATT-CGTGTAAGACC-CTGTCTGGGACAATGGCA
1 TCG-ATTGTGATTACGTGTAAGACCAC-GTCTGGGACATTGGCA
* * *
32932944 TCGATATGTGATTACATGTAAGACCACATCTGGGACGTTGGCA
1 TCGAT-TGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
32932987 T
1 T
32932988 TGTACGAGTC
Statistics
Matches: 106, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
40 2 0.02
41 28 0.26
42 9 0.08
43 61 0.58
44 6 0.06
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TCGATTGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:32932978 original size:84 final size:84
Alignment explanation
Indices: 32932830--32932991 Score: 211
Period size: 84 Copynumber: 1.9 Consensus size: 84
32932820 ATATGTGTTA
** * * ** *
32932830 TCGTGTAAAACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACGTGTAAGACCATGTTTGGGA
1 TCGTGTAAAACCACGTCTGGGACAATGGCATCGACTTGTGATTACATGTAAGACCACATCTGGGA
32932895 CATTGGCATTGTATTTGAT
66 CATTGGCATTGTATTTGAT
*
32932914 TCGTGTAAGACC-CTGTCTGGGACAATGGCATCGA-TATGTGATTACATGTAAGACCACATCTGG
1 TCGTGTAAAACCAC-GTCTGGGACAATGGCATCGACT-TGTGATTACATGTAAGACCACATCTGG
*
32932977 GACGTTGGCATTGTA
64 GACATTGGCATTGTA
32932992 CGAGTCTTTC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 2 0.03
84 65 0.97
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (84 bp):
TCGTGTAAAACCACGTCTGGGACAATGGCATCGACTTGTGATTACATGTAAGACCACATCTGGGA
CATTGGCATTGTATTTGAT
Found at i:32933177 original size:16 final size:17
Alignment explanation
Indices: 32933148--32933179 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32933138 TGAATTGATG
32933148 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
32933165 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
32933180 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:32934659 original size:42 final size:42
Alignment explanation
Indices: 32934603--32934777 Score: 343
Period size: 42 Copynumber: 4.2 Consensus size: 42
32934593 ACTTAAGTTC
32934603 TTTAT-CTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
1 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
32934644 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
1 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
32934686 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
1 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
32934728 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
1 TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
32934770 TTTATGCT
1 TTTATGCT
32934778 AAGTTCACAT
Statistics
Matches: 133, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
41 5 0.04
42 128 0.96
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (42 bp):
TTTATGCTTCACTTACCAATGTTCATGCCAAGTTTCTTTGTT
Found at i:32938988 original size:18 final size:19
Alignment explanation
Indices: 32938935--32938991 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
32938925 ATTACAAAAA
*
32938935 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
*
32938954 CAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
32938973 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
32938991 A
1 A
32938992 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:32942386 original size:12 final size:12
Alignment explanation
Indices: 32942369--32942398 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
32942359 GGTATGCAGA
32942369 ATCTTGTTTTTT
1 ATCTTGTTTTTT
32942381 ATCTTG-TTTTT
1 ATCTTGTTTTTT
32942392 ATCTTGT
1 ATCTTGT
32942399 CCAAATTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.70
Consensus pattern (12 bp):
ATCTTGTTTTTT
Found at i:32945431 original size:19 final size:21
Alignment explanation
Indices: 32945394--32945432 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
32945384 TATTTTTAAT
32945394 GTTCAAATTCTTTGATAAGAG
1 GTTCAAATTCTTTGATAAGAG
*
32945415 GTTC-AATT-TTTGTTAAGA
1 GTTCAAATTCTTTGATAAGA
32945433 TGTTAGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 4 0.24
21 4 0.24
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.44
Consensus pattern (21 bp):
GTTCAAATTCTTTGATAAGAG
Found at i:32948228 original size:7 final size:7
Alignment explanation
Indices: 32948213--32948242 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
32948203 TATTTTGTCA
*
32948213 TCACACT
1 TCACCCT
32948220 TCACCCT
1 TCACCCT
32948227 TCACCCT
1 TCACCCT
32948234 TCACCCT
1 TCACCCT
32948241 TC
1 TC
32948243 GTACTTCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.53, G:0.00, T:0.30
Consensus pattern (7 bp):
TCACCCT
Found at i:32957818 original size:9 final size:9
Alignment explanation
Indices: 32957798--32957864 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
32957788 GTAGTGATTC
*
32957798 AATTCAGTT
1 AATTCGGTT
*
32957807 AATTCGGGT
1 AATTCGGTT
32957816 AATTCGGTT
1 AATTCGGTT
32957825 AATTCGGTT
1 AATTCGGTT
* *
32957834 AATTTGGGT
1 AATTCGGTT
*
32957843 AATTTGGTT
1 AATTCGGTT
32957852 AATTCGGTT
1 AATTCGGTT
32957861 AATT
1 AATT
32957865 TTTAACCAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:32957865 original size:27 final size:27
Alignment explanation
Indices: 32957798--32957865 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
32957788 GTAGTGATTC
* *
32957798 AATTCAGTTAATTCGGGTAATTCGGTT
1 AATTCGGTTAATTTGGGTAATTCGGTT
*
32957825 AATTCGGTTAATTTGGGTAATTTGGTT
1 AATTCGGTTAATTTGGGTAATTCGGTT
32957852 AATTCGGTTAATTT
1 AATTCGGTTAATTT
32957866 TTAACCAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.46
Consensus pattern (27 bp):
AATTCGGTTAATTTGGGTAATTCGGTT
Found at i:32963914 original size:50 final size:51
Alignment explanation
Indices: 32963859--32963959 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 51
32963849 ATTTCCACCT
32963859 CGATACTCGTTAATTGACAGAAGCAACAGAGGAATAATAT-CTGCAATTTC
1 CGATACTCGTTAATTGACAGAAGCAACAGAGGAATAATATGCTGCAATTTC
32963909 CGATACTCGTTAATTGACAGAAGCAACAGAGGAATAATATGCTGCAATTTC
1 CGATACTCGTTAATTGACAGAAGCAACAGAGGAATAATATGCTGCAATTTC
32963960 AAAGAACTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 40 0.80
51 10 0.20
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.26
Consensus pattern (51 bp):
CGATACTCGTTAATTGACAGAAGCAACAGAGGAATAATATGCTGCAATTTC
Found at i:32964997 original size:16 final size:16
Alignment explanation
Indices: 32964954--32965002 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
32964944 ATAGCACGTT
*
32964954 TGGAATAGAGGCGTAA
1 TGGAATAGAGGTGTAA
32964970 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
* *
32964986 TGGATTAGAGGTATAA
1 TGGAATAGAGGTGTAA
32965002 T
1 T
32965003 AGTATTCTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.37, C:0.02, G:0.35, T:0.27
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:32965208 original size:16 final size:16
Alignment explanation
Indices: 32965171--32965212 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
32965161 TTAATCATAT
*
32965171 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
32965187 TT-AAATATATTATAA
1 TTAAAATATATTATAA
32965202 TTAAAATATAT
1 TTAAAATATAT
32965213 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:32965219 original size:14 final size:15
Alignment explanation
Indices: 32965180--32965221 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32965170 TTTAAACATA
*
32965180 ATTATTATTAAATAT
1 ATTATAATTAAATAT
32965195 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
32965209 A-TATAATTTAATA
1 ATTATAATTAAATA
32965222 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:32970271 original size:9 final size:9
Alignment explanation
Indices: 32970257--32970388 Score: 63
Period size: 9 Copynumber: 15.7 Consensus size: 9
32970247 CATCGATATG
32970257 TATGTAATT
1 TATGTAATT
32970266 TATGTAATT
1 TATGTAATT
*
32970275 TATGTATTATG
1 TATGTA--ATT
* *
32970286 TATGTTATG
1 TATGTAATT
*
32970295 TAT-TAAGT
1 TATGTAATT
*
32970303 TGTGT-A-T
1 TATGTAATT
**
32970310 TATGTAAGC
1 TATGTAATT
*
32970319 TGTGT-A-T
1 TATGTAATT
*
32970326 TATGTAAGT
1 TATGTAATT
32970335 TATGTAA--
1 TATGTAATT
32970342 TATGTAATT
1 TATGTAATT
*
32970351 TATGTAAGT
1 TATGTAATT
32970360 TATGT-A-T
1 TATGTAATT
32970367 TATGT-A-T
1 TATGTAATT
32970374 TATGT-ATGT
1 TATGTAAT-T
32970383 TATGTA
1 TATGTA
32970389 TAATATTAAT
Statistics
Matches: 99, Mismatches: 12, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
7 30 0.30
8 9 0.09
9 53 0.54
11 7 0.07
ACGTcount: A:0.30, C:0.01, G:0.18, T:0.52
Consensus pattern (9 bp):
TATGTAATT
Found at i:32970315 original size:44 final size:44
Alignment explanation
Indices: 32970265--32971154 Score: 353
Period size: 44 Copynumber: 20.4 Consensus size: 44
32970255 TGTATGTAAT
* *
32970265 TTATGTAATTTATGTATTATGTATGTTATGTATTAAGTTGTGTA
1 TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
* * * *
32970309 TTATGTAAGCTGTGTATTATGTAAGTTATGTAATATGTAATTTATGTAA
1 TTATGTAAGTTATGTATTATGTATGTTATG---TAT-TAAGTTATGT-A
*
32970358 GTTATGT-A-TTATGTATTATGTATGTTATGTA-TAATATTAAT-TAA
1 -TTATGTAAGTTATGTATTATGTATGTTATGTATTAA-GTT-ATGT-A
* *
32970402 GTTGTGT-A-TTATGTATTATGTATGTTATGTA-TAATATTAAT-TAA
1 -TTATGTAAGTTATGTATTATGTATGTTATGTATTAA-GTT-ATGT-A
*
32970446 GTTGTGT-A-TTATGTATTATGTATGTTATGTA-TAA--TAT-TA
1 -TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
*
32970485 --AT-TAAGTTGTGTATTATGTA--TTATGTA-T--GTTATGTA
1 TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
* * *
32970521 TTATGTTAGTTATGTACTATGTAAGTTATGTATTATGTTAGTTATGTA
1 TTATGTAAGTTATGTATTATGTATGTTATGTATTA----AGTTATGTA
* *
32970569 CTATGTAAGTTATGTATTATGTTAGTTATGTACTATGTAAGTTATGTATTATGTA
1 TTATGTAAGTTATGTATTA---T-G-TATGT--TATGT-A-TTAAG--TTATGTA
* *
32970624 TGTTATGTAAGTTATGTATTATGTATATTATGTATTAAGTTGTGTA
1 --TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
* * * *
32970670 TTATGTAAGCTGTGTATTATGTAAGTTATGTAATATGTAATTTATGTAA
1 TTATGTAAGTTATGTATTATGTATGTTATG---TAT-TAAGTTATGT-A
*
32970719 GTTATGT-A-TTATGTATTATGTATGTTATGTA-TAATATTAAT-TAA
1 -TTATGTAAGTTATGTATTATGTATGTTATGTATTAA-GTT-ATGT-A
*
32970763 GTTGTGT-A-TTATGTATTATGTATGTTATGTA-TAA--TAT-TA
1 -TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
*
32970802 --AT-TAAGTTGTGTATTATGTA--TTATGTA-T--GTTATGTA
1 TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
* * * *
32970838 TTATGTTAGTTATGTACTATGTAAGTTATGTATTATG-TATG--
1 TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
* * * * *
32970879 TTATTTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTCTA
1 TTATGTAAGTTATGTATTATGTATGTTATGTATTAAG--TTATG--TA
* *
32970927 TTATGT-A--TAT-TATTAAT-TAAG-T-TGT-GT-A-TTATGTA
1 TTATGTAAGTTATGTATT-ATGTATGTTATGTATTAAGTTATGTA
*
32970962 TTATGTATGTTATGTATTATGT-TAGTTATGTACTATGTAAGTTATGTA
1 TTATGTAAGTTATGTATTATGTAT-GTTATG---TAT-TAAGTTATGTA
* * * *
32971010 TTATGTATGTTA--T-TTAAGTTATG-TAT-AATGTAAGTTGTGTA
1 TTATGTAAGTTATGTATTATG-TATGTTATGTAT-TAAGTTATGTA
* *
32971051 TTATGT-A-TTATGTCTATTATGTATATTAT-TAATTAAGTTGTGTA
1 TTATGTAAGTTATG--TATTATGTATGTTATGT-ATTAAGTTATGTA
* ** * *
32971095 TTATGT-A-TTATGTATGTTTGTATAAATAT-TAACTAAGTTGTGTA
1 TTATGTAAGTTATGTAT-TATGTAT-GTTATGT-ATTAAGTTATGTA
*
32971139 TAATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
32971155 AGAAATGTAT
Statistics
Matches: 687, Mismatches: 64, Indels: 188
0.73 0.07 0.20
Matches are distributed among these distances:
35 32 0.05
36 8 0.01
37 31 0.05
38 9 0.01
39 41 0.06
40 7 0.01
41 70 0.10
42 8 0.01
43 21 0.03
44 238 0.35
45 23 0.03
46 17 0.02
47 9 0.01
48 104 0.15
49 5 0.01
50 17 0.02
51 1 0.00
52 5 0.01
53 6 0.01
54 1 0.00
55 12 0.02
56 1 0.00
57 21 0.03
ACGTcount: A:0.30, C:0.01, G:0.17, T:0.52
Consensus pattern (44 bp):
TTATGTAAGTTATGTATTATGTATGTTATGTATTAAGTTATGTA
Found at i:32971042 original size:140 final size:140
Alignment explanation
Indices: 32970454--32971117 Score: 761
Period size: 140 Copynumber: 4.8 Consensus size: 140
32970444 AAGTTGTGTA
* * *
32970454 TTATGTATTATGTATGTTATGT-A-TAATAT-TAAT-TAAGTTGTGTATTATGTATTATGTATGT
1 TTATGTATTATGTATGTTATGTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTATAT
* * *
32970515 TATG-----TATT-A-T--GTT-AG--TTATGTACTATGTAAGTTATGTATTATGTTAGTTATGT
66 TATGTATATTATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTATTATGTTAGTTATGT
32970568 ACTATGTAAG
131 ACTATGTAAG
* * *
32970578 TTATGTATTATGTTAGTTATGTACTATGTAAGTTATGTATTATGTATGTTATGTAAGTTATGTAT
1 TTATGTATTA---T-G-TATGT--TATGTAAGTTATGTATAATGTAAGTTGTGT-A-TTATGTAT
* * * * * * *
32970643 TATGTATATTATGTAT-TAAGTT-GTGT-A-TTATGTAAGCTGTGTATTATGTAAGTTATGTAAT
57 TATGTATATTATGTATATTA-TTAAT-TAAGTTGTGT-A-TTATGTATTATGTATGTTATGTATT
* * *
32970704 ATGTAATTTATGTAAGTTATGT-A-
118 ATGTTAGTTATGT-A-CTATGTAAG
* * *
32970727 TTATGTATTATGTATGTTATGT-A-TAATAT-TAAT-TAAGTTGTGTATTATGTATTATGTATGT
1 TTATGTATTATGTATGTTATGTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTATAT
*
32970788 TATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTATTATGTTAGTTATGT
66 TATGTATATTATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTATTATGTTAGTTATGT
32970853 ACTATGTAAG
131 ACTATGTAAG
* *
32970863 TTATGTATTATGTATGTTATTTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTCTAT
1 TTATGTATTATGTATGTTATGTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTATAT
32970928 TATGTATATTATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTATTATGTTAGTTATGT
66 TATGTATATTATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTATTATGTTAGTTATGT
32970993 ACTATGTAAG
131 ACTATGTAAG
* *
32971003 TTATGTATTATGTATGTTATTTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTCTAT
1 TTATGTATTATGTATGTTATGTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTATAT
32971068 TATGTATATTATTAATTAAGTTGTGTATTATGTATTATGTATGTT-TGTAT
66 TATGTATATTATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTAT
32971118 AAATATTAAC
Statistics
Matches: 463, Mismatches: 39, Indels: 61
0.82 0.07 0.11
Matches are distributed among these distances:
124 10 0.02
127 1 0.00
128 1 0.00
129 5 0.01
131 5 0.01
132 1 0.00
133 4 0.01
134 8 0.02
135 10 0.02
136 80 0.17
137 26 0.06
138 17 0.04
139 12 0.03
140 214 0.46
141 2 0.00
142 7 0.02
144 8 0.02
145 2 0.00
146 1 0.00
149 42 0.09
150 2 0.00
151 5 0.01
ACGTcount: A:0.29, C:0.01, G:0.17, T:0.52
Consensus pattern (140 bp):
TTATGTATTATGTATGTTATGTAAGTTATGTATAATGTAAGTTGTGTATTATGTATTATGTATAT
TATGTATATTATTAATTAAGTTGTGTATTATGTATTATGTATGTTATGTATTATGTTAGTTATGT
ACTATGTAAG
Found at i:32971155 original size:9 final size:9
Alignment explanation
Indices: 32971141--32971278 Score: 96
Period size: 9 Copynumber: 16.0 Consensus size: 9
32971131 GTTGTGTATA
32971141 ATGTAAGTT
1 ATGTAAGTT
**
32971150 ATGTAAGAA
1 ATGTAAGTT
32971159 ATGT-A-TT
1 ATGTAAGTT
32971166 ATGTAAGTT
1 ATGTAAGTT
* *
32971175 GTGT-A-TA
1 ATGTAAGTT
*
32971182 ATGTTAGTT
1 ATGTAAGTT
**
32971191 ATCAAAGTT
1 ATGTAAGTT
32971200 ATGT-A-TT
1 ATGTAAGTT
32971207 ATGTAAGTT
1 ATGTAAGTT
*
32971216 ATTTAAGTT
1 ATGTAAGTT
32971225 ATGTAAGTT
1 ATGTAAGTT
32971234 ATGT-A-TT
1 ATGTAAGTT
32971241 ATGTAAGTTAT
1 ATGTAAG-T-T
*
32971252 CATGTTA-TT
1 -ATGTAAGTT
32971261 ATGTAAGTT
1 ATGTAAGTT
*
32971270 ATGCAAGTT
1 ATGTAAGTT
32971279 TATATATAAG
Statistics
Matches: 99, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
7 20 0.20
8 13 0.13
9 58 0.59
10 2 0.02
11 1 0.01
12 5 0.05
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:32971242 original size:25 final size:25
Alignment explanation
Indices: 32970325--32971251 Score: 351
Period size: 25 Copynumber: 39.2 Consensus size: 25
32970315 AAGCTGTGTA
* *
32970325 TTATGTAAGTTATGTAATATGTAAT
1 TTATGTAAGTTATGTATTATGTAAG
32970350 TTATGTAAGTTATGTATTATGT-A-
1 TTATGTAAGTTATGTATTATGTAAG
* *
32970373 TTATGTATGTTATGTA-TA-AT-A-
1 TTATGTAAGTTATGTATTATGTAAG
*
32970394 TTAAT-TAAGTTGTGTATTATGT-A-
1 TT-ATGTAAGTTATGTATTATGTAAG
* *
32970417 TTATGTATGTTATGTA-TA-AT-A-
1 TTATGTAAGTTATGTATTATGTAAG
*
32970438 TTAAT-TAAGTTGTGTATTATGT-A-
1 TT-ATGTAAGTTATGTATTATGTAAG
* *
32970461 TTATGTATGTTATGTA-TA-AT-A-
1 TTATGTAAGTTATGTATTATGTAAG
*
32970482 TTAAT-TAAGTTGTGTATTATGT-A-
1 TT-ATGTAAGTTATGTATTATGTAAG
* *
32970505 TTATGTATGTTATGTATTATGTTAG
1 TTATGTAAGTTATGTATTATGTAAG
*
32970530 TTATGT-A-CTATGTAAGTTATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
* *
32970553 TTATGTTAGTTATGTACTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
32970578 TTATGT-A-TTATGTTAGTTATGT-A-
1 TTATGTAAGTTATG-TA-TTATGTAAG
* *
32970601 CTATGTAAGTTATGTATTATGTATG
1 TTATGTAAGTTATGTATTATGTAAG
32970626 TTATGTAAGTTATGTATTATGTATA-
1 TTATGTAAGTTATGTATTATGTA-AG
*
32970651 TTATGTATTAAGTTGTGTATTATGTAAG
1 TTATG---TAAGTTATGTATTATGTAAG
* *
32970679 CTGTGT-A-TTATGTAAGTTATGTAA-
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
32970703 -TATGTAATTTATGTAAGTTATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
32970727 TTATGT-A-TTATGTATGTTATGTATAATA
1 TTATGTAAGTTATGTA--TTATG--TAA-G
*
32970755 TTAAT-TAAGTTGTGTATTATGT-A-
1 TT-ATGTAAGTTATGTATTATGTAAG
* *
32970778 TTATGTATGTTATGTA-TA-AT-A-
1 TTATGTAAGTTATGTATTATGTAAG
*
32970799 TTAAT-TAAGTTGTGTATTATGT-A-
1 TT-ATGTAAGTTATGTATTATGTAAG
* *
32970822 TTATGTATGTTATGTATTATGTTAG
1 TTATGTAAGTTATGTATTATGTAAG
*
32970847 TTATGT-A-CTATGTAAGTTATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
* *
32970870 TTATGTATGTTATTTAAGTTATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
* *
32970895 TAATGTAAGTTGTGTATTATGT-A-
1 TTATGTAAGTTATGTATTATGTAAG
*
32970918 TTATGTCTA-TTATGTA-TAT-T-A-
1 TTATGT-AAGTTATGTATTATGTAAG
*
32970939 TTAAT-TAAGTTGTGTATTATGT-A-
1 TT-ATGTAAGTTATGTATTATGTAAG
* *
32970962 TTATGTATGTTATGTATTATGTTAG
1 TTATGTAAGTTATGTATTATGTAAG
*
32970987 TTATGT-A-CTATGTAAGTTATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
* *
32971010 TTATGTATGTTATTTAAGTTATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
* *
32971035 TAATGTAAGTTGTGTATTATGT-A-
1 TTATGTAAGTTATGTATTATGTAAG
*
32971058 TTATGTCTA-TTATGTA-TAT-T-A-
1 TTATGT-AAGTTATGTATTATGTAAG
*
32971079 TTAAT-TAAGTTGTGTATTATGT-A-
1 TT-ATGTAAGTTATGTATTATGTAAG
* **
32971102 TTATGTATGTT-TGTA-TAAAT-A-
1 TTATGTAAGTTATGTATTATGTAAG
** * *
32971123 TTAACTAAGTTGTGTATAATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
**
32971148 TTATGTAAGAAATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * **
32971173 TTGTGT-A-TAATGTTAGTTATCAAAG
1 TTATGTAAGTTATG-TA-TTATGTAAG
*
32971198 TTATGT-A-TTATGTAAGTTATTTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
32971223 TTATGTAAGTTATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
32971248 TTAT
1 TTAT
32971252 CATGTTATTA
Statistics
Matches: 722, Mismatches: 97, Indels: 166
0.73 0.10 0.17
Matches are distributed among these distances:
20 2 0.00
21 86 0.12
22 63 0.09
23 235 0.33
24 34 0.05
25 254 0.35
26 4 0.01
27 7 0.01
28 28 0.04
29 3 0.00
30 6 0.01
ACGTcount: A:0.31, C:0.01, G:0.17, T:0.51
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:32971244 original size:16 final size:16
Alignment explanation
Indices: 32970265--32971272 Score: 521
Period size: 16 Copynumber: 65.9 Consensus size: 16
32970255 TGTATGTAAT
*
32970265 TTATGTAATTTATGTA
1 TTATGTAAGTTATGTA
*
32970281 TTATGTATGTTATG--
1 TTATGTAAGTTATGTA
*
32970295 -TAT-TAAGTTGTGTA
1 TTATGTAAGTTATGTA
* *
32970309 TTATGTAAGCTGTGTA
1 TTATGTAAGTTATGTA
32970325 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
32970341 ATATGTAATTTATGTAA
1 TTATGTAAGTTATGT-A
32970358 GTTATGT-A-TTATGTA
1 -TTATGTAAGTTATGTA
*
32970373 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970389 TAATAT-TAA-TTAAG--
1 T--TATGTAAGTTATGTA
*
32970403 TTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTA
*
32970417 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970433 TAATAT-TAA-TTAAG--
1 T--TATGTAAGTTATGTA
*
32970447 TTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTA
*
32970461 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970477 TAATAT-TAA-TTAAG--
1 T--TATGTAAGTTATGTA
*
32970491 TTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTA
*
32970505 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970521 TTATGTTAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970537 CTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970553 TTATGTTAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970569 CTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970585 TTATGTTAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970601 CTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970617 TTATGTATGTTATGTAA
1 TTATGTAAGTTATGT-A
32970634 GTTATGT-A-TTATGTATA
1 -TTATGTAAGTTATG--TA
*
32970651 TTATGTATTAAGTTGTGTA
1 TTATG---TAAGTTATGTA
* *
32970670 TTATGTAAGCTGTGTA
1 TTATGTAAGTTATGTA
32970686 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
32970702 ATATGTAATTTATGTAA
1 TTATGTAAGTTATGT-A
32970719 GTTATGT-A-TTATGTA
1 -TTATGTAAGTTATGTA
*
32970734 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970750 TAATAT-TAA-TTAAG--
1 T--TATGTAAGTTATGTA
*
32970764 TTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTA
*
32970778 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970794 TAATAT-TAA-TTAAG--
1 T--TATGTAAGTTATGTA
*
32970808 TTGTGT-A-TTATGTA
1 TTATGTAAGTTATGTA
*
32970822 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970838 TTATGTTAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970854 CTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
32970870 TTA--T--G-TATG--
1 TTATGTAAGTTATGTA
*
32970879 TTATTTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
32970895 TAATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
32970911 TTATGT-A-TTATGTCTA
1 TTATGTAAGTTATG--TA
32970927 TTATGTATA-TTAT-TAA
1 TTATGTA-AGTTATGT-A
*
32970943 TTAAGTTGTGTA-TTATGTA
1 TT-A--TGT-AAGTTATGTA
*
32970962 TTATGTATGTTATGTA
1 TTATGTAAGTTATGTA
*
32970978 TTATGTTAGTTATGTA
1 TTATGTAAGTTATGTA
*
32970994 CTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
32971010 TTA--T--G-TATG--
1 TTATGTAAGTTATGTA
*
32971019 TTATTTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
32971035 TAATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
32971051 TTATGT-A-TTATGTCTA
1 TTATGTAAGTTATG--TA
32971067 TTATGT-A--TAT-TA
1 TTATGTAAGTTATGTA
*
32971079 TTAAT-TAAGTTGTGTA
1 TT-ATGTAAGTTATGTA
32971095 TTATGT-A-TTATGTA
1 TTATGTAAGTTATGTA
* **
32971109 TGTTTGT-A--TAAATA
1 T-TATGTAAGTTATGTA
** *
32971123 TTAACTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
32971139 TAATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
32971155 --A-G-AA---ATGTA
1 TTATGTAAGTTATGTA
*
32971164 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
32971180 -TA---ATGTTA-G--
1 TTATGTAAGTTATGTA
**
32971189 TTATCAAAGTTATGTA
1 TTATGTAAGTTATGTA
*
32971205 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
32971222 GTTATGTAAGTTATGTA
1 -TTATGTAAGTTATGTA
32971239 TTATGTAAGTTATCATGTTA
1 TTATGTAAG-T-T-ATG-TA
32971259 TTATGTAAGTTATG
1 TTATGTAAGTTATG
32971273 CAAGTTTATA
Statistics
Matches: 769, Mismatches: 110, Indels: 225
0.70 0.10 0.20
Matches are distributed among these distances:
9 11 0.01
10 2 0.00
11 12 0.02
12 56 0.07
13 23 0.03
14 75 0.10
15 23 0.03
16 450 0.59
17 23 0.03
18 54 0.07
19 23 0.03
20 13 0.02
21 4 0.01
ACGTcount: A:0.30, C:0.01, G:0.18, T:0.51
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:32971262 original size:20 final size:19
Alignment explanation
Indices: 32971199--32971271 Score: 77
Period size: 20 Copynumber: 4.1 Consensus size: 19
32971189 TTATCAAAGT
32971199 TATG-TATTATGTAAGTTA
1 TATGTTATTATGTAAGTTA
*
32971217 T-T-TAAGTTATGTAAG-T-
1 TATGTTA-TTATGTAAGTTA
32971233 TATG-TATTATGTAAGTTA
1 TATGTTATTATGTAAGTTA
32971251 TCATGTTATTATGTAAGTTA
1 T-ATGTTATTATGTAAGTTA
32971271 T
1 T
32971272 GCAAGTTTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
16 10 0.22
17 6 0.13
18 11 0.24
19 3 0.07
20 15 0.33
ACGTcount: A:0.32, C:0.01, G:0.16, T:0.51
Consensus pattern (19 bp):
TATGTTATTATGTAAGTTA
Found at i:32971289 original size:12 final size:12
Alignment explanation
Indices: 32971273--32971302 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32971263 GTAAGTTATG
32971273 CAAGTTTATATA
1 CAAGTTTATATA
*
32971285 TAAGTTTATATA
1 CAAGTTTATATA
32971297 CAAGTT
1 CAAGTT
32971303 ATGTAAGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (12 bp):
CAAGTTTATATA
Found at i:32971459 original size:23 final size:23
Alignment explanation
Indices: 32971414--32971459 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32971404 ATATGGGGTG
***
32971414 ATATATTAAAAAAATAGGTTTTA
1 ATATATTAAAAAAATAACATTTA
*
32971437 ATATTTTAAAAAAATAACATTTA
1 ATATATTAAAAAAATAACATTTA
32971460 CAATTATTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.39
Consensus pattern (23 bp):
ATATATTAAAAAAATAACATTTA
Found at i:32971973 original size:153 final size:151
Alignment explanation
Indices: 32971698--32972143 Score: 666
Period size: 153 Copynumber: 3.0 Consensus size: 151
32971688 CAATTGTTCG
* * * * *
32971698 TATTTTGGCCCTTTGTTCGTATTTTTTTTCGA-ATTTTATTACTTTTCAAAAATATACTATTTTT
1 TATTTCGGCCCTATGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAATATACTATTTTT
*
32971762 AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAACTGTATTAATTTAGTGTGTTTTTT
66 AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTT
*
32971827 AAATAAATTTAAAAAAATCAT
131 AAATAAATTTAAAAAAACCAT
*
32971848 TATTTCGGCCCTCTGTTCGTATTTTTTTCCCTAGATTTTATTACTTTTAAAAAATATACTATTTT
1 TATTTCGGCCCTATGTTCGTATTTTTTTCCC-AGATTTTATTACTTTTAAAAAATATACTATTTT
32971913 TAAATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTAT
65 T-AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTT-T
*
32971978 TTTAAATAAA-TTAAAAAAACCCT
128 TTTAAATAAATTTAAAAAAACCAT
* * * * * *
32972001 TATTTCAGCCTTATGTTCGTA-TTTTTTCCCGGATTTTAATAATTTTAAAAAATATAGTATTTTT
1 TATTTCGGCCCTATGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAATATACTATTTTT
* * * *
32972065 TATTTTTTTATTTTACATTA-TTTAGTACATTATATTTGAAATTTATTAATTTAGTATATTTTTT
66 AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTT
32972129 AAATAAATTTAAAAA
131 AAATAAATTTAAAAA
32972144 TAGTGTATAG
Statistics
Matches: 272, Mismatches: 19, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
148 11 0.04
149 44 0.16
150 46 0.17
151 31 0.11
152 40 0.15
153 89 0.33
154 11 0.04
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.53
Consensus pattern (151 bp):
TATTTCGGCCCTATGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAATATACTATTTTT
AATTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTT
AAATAAATTTAAAAAAACCAT
Found at i:32978374 original size:13 final size:13
Alignment explanation
Indices: 32978356--32978381 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32978346 AACAAATTAT
32978356 AAAATATATATAA
1 AAAATATATATAA
32978369 AAAATATATATAA
1 AAAATATATATAA
32978382 GTATGTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATATATATAA
Found at i:32978513 original size:3 final size:3
Alignment explanation
Indices: 32978505--32978571 Score: 109
Period size: 3 Copynumber: 22.7 Consensus size: 3
32978495 GAACTAATAC
32978505 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
32978553 AAT -AT AAC AAG AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
32978572 AAAAAAGGAC
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:32984681 original size:12 final size:12
Alignment explanation
Indices: 32984664--32984706 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
32984654 AATAAATAAA
*
32984664 TAAAAATAAATTC
1 TAAAACTAAA-TC
*
32984677 TAAAACTAAAAC
1 TAAAACTAAATC
32984689 TAAAACTAAAGTC
1 TAAAACTAAA-TC
32984702 TAAAA
1 TAAAA
32984707 GTCTAAAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.63, C:0.12, G:0.02, T:0.23
Consensus pattern (12 bp):
TAAAACTAAATC
Found at i:32984709 original size:8 final size:8
Alignment explanation
Indices: 32984696--32984730 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
32984686 AACTAAAACT
32984696 AAAGTCTA
1 AAAGTCTA
32984704 AAAGTCTA
1 AAAGTCTA
32984712 AAAGTCTA
1 AAAGTCTA
32984720 AAAGTCTA
1 AAAGTCTA
32984728 AAA
1 AAA
32984731 ATAATTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.23
Consensus pattern (8 bp):
AAAGTCTA
Found at i:32992287 original size:91 final size:91
Alignment explanation
Indices: 32992177--32992389 Score: 338
Period size: 91 Copynumber: 2.3 Consensus size: 91
32992167 TTAAATATCT
32992177 ATTGTATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAA
1 ATTGTATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAA
*
32992242 ATTATATTTAAT-ATTAATTATTTTAA
66 ATTATATGTAATAATT-ATTATTTTAA
* *
32992268 ATTGTATAAATTTATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAA
1 ATTGTATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAA
32992333 ATTATATGTAATAATTATTATTTTAA
66 ATTATATGTAATAATTATTATTTTAA
* * * * *
32992359 ATTATACAAATTCATAAAATATAATTTATTA
1 ATTGTATAAATTCATATAAGAAAATTTATTA
32992390 GTTATAATTA
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 109 0.97
92 3 0.03
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
ATTGTATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAA
ATTATATGTAATAATTATTATTTTAA
Found at i:32992309 original size:44 final size:45
Alignment explanation
Indices: 32992177--32992310 Score: 123
Period size: 44 Copynumber: 3.0 Consensus size: 45
32992167 TTAAATATCT
*
32992177 ATTGTATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGA
1 ATTGTATAAATTTATATAAGAAAATTTATTATCAAGAATTTTA-GA
* * * * * **
32992223 AAT-TATATATCATTAT-TAA-ATTATATTTAATATTAATTATTTTA-A
1 ATTGTATAAAT--TTATATAAGA--AAATTTATTATCAAGAATTTTAGA
32992268 ATTGTATAAATTTATATAAGAAAATTTATTATCAAGAATTTTA
1 ATTGTATAAATTTATATAAGAAAATTTATTATCAAGAATTTTA
32992311 TGAAATTATA
Statistics
Matches: 66, Mismatches: 15, Indels: 16
0.68 0.15 0.16
Matches are distributed among these distances:
44 21 0.32
45 13 0.20
46 12 0.18
47 20 0.30
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (45 bp):
ATTGTATAAATTTATATAAGAAAATTTATTATCAAGAATTTTAGA
Found at i:32992364 original size:44 final size:43
Alignment explanation
Indices: 32992222--32992364 Score: 105
Period size: 44 Copynumber: 3.2 Consensus size: 43
32992212 GAATTTTATG
*
32992222 AAATTATATATCATTATTAAATTATATTTAAT-ATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATT-ATTATTTT
* ** ** *
32992266 AAATTGTATAAATTTATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATA-TTAT-T-ATTAAATTATATTAAT-AATTATTATT-TT
32992313 AAATTATATATTATTATTAAATTATATGTAATAATTATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATTATTATTTT
32992357 AAATTATA
1 AAATTATA
32992365 CAAATTCATA
Statistics
Matches: 74, Mismatches: 13, Indels: 24
0.67 0.12 0.22
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 22 0.30
45 10 0.14
46 10 0.14
47 12 0.16
48 4 0.05
49 6 0.08
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.50
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATTATTATTTT
Found at i:32992553 original size:15 final size:15
Alignment explanation
Indices: 32992543--32992601 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
32992533 TAAATTCATG
32992543 ATAT-TTTAATTATA
1 ATATATTTAATTATA
*
32992557 ATATATTTAATAATA
1 ATATATTTAATTATA
32992572 AT-TATGTTAATT-T-
1 ATATAT-TTAATTATA
*
32992585 ATAT-TTTAATAATA
1 ATATATTTAATTATA
32992599 ATA
1 ATA
32992602 ATCTTATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
12 5 0.14
13 4 0.11
14 12 0.32
15 16 0.43
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATATATTTAATTATA
Found at i:32992794 original size:45 final size:44
Alignment explanation
Indices: 32992713--32992803 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
32992703 ACATCTATTC
*
32992713 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
*** *
32992757 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCATTA
32992802 CA
1 CA
32992804 CCTCTATTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 16 0.39
45 25 0.61
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
Found at i:32992803 original size:16 final size:16
Alignment explanation
Indices: 32992782--32992851 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
32992772 TTGATTTGCT
*
32992782 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
* *
32992798 ATTACACCTCTATTCT
1 ATTACACCTCTAATCC
32992814 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
32992830 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
32992846 AATACA
1 ATTACA
32992852 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.33, C:0.34, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:32992816 original size:32 final size:32
Alignment explanation
Indices: 32992780--32992841 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
32992770 AGTTGATTTG
* *
32992780 CTATTACACCTCTATTCCATTACACCTCTATT
1 CTATTACACCTCTAATCCAATACACCTCTATT
32992812 CTATTACACCTCTAATCCAATACACCTCTA
1 CTATTACACCTCTAATCCAATACACCTCTA
32992842 ATCCAATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (32 bp):
CTATTACACCTCTAATCCAATACACCTCTATT
Found at i:32999226 original size:6 final size:6
Alignment explanation
Indices: 32999212--32999288 Score: 136
Period size: 6 Copynumber: 12.8 Consensus size: 6
32999202 AGAATGTAGT
*
32999212 TCTGCC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC
*
32999260 TCTGGC TCTGGC CCTGGC TCTGGC TCTGG
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGG
32999289 TGCATGATGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.00, C:0.35, G:0.32, T:0.32
Consensus pattern (6 bp):
TCTGGC
Found at i:33005215 original size:19 final size:21
Alignment explanation
Indices: 33005178--33005217 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33005168 AAAACATTAT
33005178 TAAAATTCATAAAATATTAAA
1 TAAAATTCATAAAATATTAAA
*
33005199 TAAAGTTCA-AAAA-ATTAAA
1 TAAAATTCATAAAATATTAAA
33005218 AACTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 4 0.22
21 8 0.44
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (21 bp):
TAAAATTCATAAAATATTAAA
Found at i:33013348 original size:9 final size:9
Alignment explanation
Indices: 33013334--33013364 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33013324 GTTAAACGAA
33013334 TCGAGTTAT
1 TCGAGTTAT
*
33013343 TCGAGTTAA
1 TCGAGTTAT
33013352 TCGAGTTAT
1 TCGAGTTAT
33013361 TCGA
1 TCGA
33013365 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:33016642 original size:18 final size:19
Alignment explanation
Indices: 33016621--33016659 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33016611 AATTTTGGAA
*
33016621 TTTATAAAT-ATTTTGATT
1 TTTAAAAATCATTTTGATT
*
33016639 TTTAAAAATCATTTTTATT
1 TTTAAAAATCATTTTGATT
33016658 TT
1 TT
33016660 ATTTTTTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTAAAAATCATTTTGATT
Found at i:33019885 original size:24 final size:23
Alignment explanation
Indices: 33019853--33019913 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
33019843 ACATAGACAA
*
33019853 AAACTGATACTTCCCTGAAAGTGG
1 AAACTGATACTTCCCAG-AAGTGG
*
33019877 AAACTGATACTTCCCAGAGGTGG
1 AAACTGATACTTCCCAGAAGTGG
* *
33019900 AAATTGAAACTTCC
1 AAACTGATACTTCC
33019914 TAAGGGATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
23 17 0.52
24 16 0.48
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (23 bp):
AAACTGATACTTCCCAGAAGTGG
Found at i:33020878 original size:16 final size:16
Alignment explanation
Indices: 33020832--33020878 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
33020822 AACGAACTAC
*
33020832 TAGAGAAAGGGCAGAA
1 TAGAGAAAGGACAGAA
* *
33020848 GAAAGAAAGGA-AGAA
1 TAGAGAAAGGACAGAA
*
33020863 TAGAGAAAAGACAGAA
1 TAGAGAAAGGACAGAA
33020879 AAAAGAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.60, C:0.04, G:0.32, T:0.04
Consensus pattern (16 bp):
TAGAGAAAGGACAGAA
Found at i:33029542 original size:14 final size:14
Alignment explanation
Indices: 33029523--33029551 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33029513 CATGCTTACT
33029523 CATAATTCATTTTA
1 CATAATTCATTTTA
33029537 CATAATTCATTTTA
1 CATAATTCATTTTA
33029551 C
1 C
33029552 GCATAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48
Consensus pattern (14 bp):
CATAATTCATTTTA
Found at i:33029556 original size:16 final size:15
Alignment explanation
Indices: 33029518--33029557 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 15
33029508 CATGACATGC
33029518 TTACTCATAATTCATT
1 TTAC-CATAATTCATT
33029534 TTA-CATAATTCATT
1 TTACCATAATTCATT
33029548 TTACGCATAA
1 TTAC-CATAA
33029558 CATAACTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 14 0.64
16 8 0.36
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (15 bp):
TTACCATAATTCATT
Found at i:33035352 original size:16 final size:16
Alignment explanation
Indices: 33035308--33035358 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
33035298 TTTGACTTTT
*
33035308 TAAAATTTAT-ATTTA
1 TAAATTTTATAATTTA
* * *
33035323 TATATTTCAGAATTTA
1 TAAATTTTATAATTTA
33035339 TAAATTTTATAATTTTA
1 TAAATTTTATAA-TTTA
33035356 TAA
1 TAA
33035359 TTAATTATTT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 6 0.22
16 14 0.52
17 7 0.26
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (16 bp):
TAAATTTTATAATTTA
Found at i:33035543 original size:21 final size:22
Alignment explanation
Indices: 33035511--33035551 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
33035501 GTCAAAGTCA
33035511 AATGTGTTTTTAATTTAAATTT
1 AATGTGTTTTTAATTTAAATTT
*
33035533 AATGT-TTTTTATTTTAAAT
1 AATGTGTTTTTAATTTAAAT
33035552 AAGCTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (22 bp):
AATGTGTTTTTAATTTAAATTT
Found at i:33051544 original size:2 final size:2
Alignment explanation
Indices: 33051537--33051561 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33051527 TACTATGAGT
33051537 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
33051562 TTTCATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:33058681 original size:3 final size:3
Alignment explanation
Indices: 33058673--33058709 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
33058663 AGTCTTTGCT
33058673 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
33058710 ATGAGTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:33058741 original size:3 final size:3
Alignment explanation
Indices: 33058733--33058768 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
33058723 AGTCTTTGCT
33058733 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33058769 ATTTCATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33060527 original size:30 final size:30
Alignment explanation
Indices: 33060463--33060529 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
33060453 TTTTACTTTT
* *
33060463 CCCCCAATACTTTTACTCCCTCCCACTTTC
1 CCCCCAATAATTTTACTCCCTCCCACTCTC
* *
33060493 CCCCCAA-AATTTTACTCCTCTCTCATCTCAC
1 CCCCCAATAATTTTACTCC-CTCCCA-CTCTC
33060524 CCCCCA
1 CCCCCA
33060530 TTTACCCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 10 0.32
30 12 0.39
31 9 0.29
ACGTcount: A:0.19, C:0.51, G:0.00, T:0.30
Consensus pattern (30 bp):
CCCCCAATAATTTTACTCCCTCCCACTCTC
Found at i:33060820 original size:98 final size:99
Alignment explanation
Indices: 33060663--33060859 Score: 387
Period size: 98 Copynumber: 2.0 Consensus size: 99
33060653 CACCCTTTAC
33060663 CCCCAAATAAAAAATCATCCAAAAAAACTCTAAACCTAAATAGTAATAATTTTATTTAGATCTAT
1 CCCCAAATAAAAAATCATCCAAAAAAACTCTAAACCTAAATAGTAATAATTTTATTTAGATCTAT
33060728 TATTAATATTATTAAATTAAATTTCACATATTCT
66 TATTAATATTATTAAATTAAATTTCACATATTCT
33060762 CCCCAAAT-AAAAATCATCCAAAAAAACTCTAAACCTAAATAGTAATAATTTTATTTAGATCTAT
1 CCCCAAATAAAAAATCATCCAAAAAAACTCTAAACCTAAATAGTAATAATTTTATTTAGATCTAT
33060826 TATTAATATTATTAAATTAAATTTCACATATTCT
66 TATTAATATTATTAAATTAAATTTCACATATTCT
33060860 ACTTTTTATA
Statistics
Matches: 98, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
98 90 0.92
99 8 0.08
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (99 bp):
CCCCAAATAAAAAATCATCCAAAAAAACTCTAAACCTAAATAGTAATAATTTTATTTAGATCTAT
TATTAATATTATTAAATTAAATTTCACATATTCT
Found at i:33063481 original size:44 final size:44
Alignment explanation
Indices: 33063425--33063512 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
33063415 GAAACAGAAA
* *
33063425 CAGAGCATATCAAGTACTGATGCAGAGCATATCT-GATACAGATG
1 CAGAGCATATCAAATACAGATGCAGAGCATAT-TAGATACAGATG
* *
33063469 CAGAGCATATCAAATACAGATGCGGAGTATATTAGATACAGATG
1 CAGAGCATATCAAATACAGATGCAGAGCATATTAGATACAGATG
33063513 TAAAATCCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.03
44 38 0.97
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (44 bp):
CAGAGCATATCAAATACAGATGCAGAGCATATTAGATACAGATG
Found at i:33063507 original size:22 final size:22
Alignment explanation
Indices: 33063411--33063512 Score: 107
Period size: 22 Copynumber: 4.6 Consensus size: 22
33063401 AGATTTTAGA
* **
33063411 ATCAGAAACAGAAACAGAGCAT
1 ATCAGATACAGATGCAGAGCAT
*
33063433 ATCA-AGTACTGATGCAGAGCAT
1 ATCAGA-TACAGATGCAGAGCAT
*
33063455 ATCTGATACAGATGCAGAGCAT
1 ATCAGATACAGATGCAGAGCAT
* * *
33063477 ATCAAATACAGATGCGGAGTAT
1 ATCAGATACAGATGCAGAGCAT
*
33063499 ATTAGATACAGATG
1 ATCAGATACAGATG
33063513 TAAAATCCTA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
21 1 0.02
22 64 0.97
23 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.21
Consensus pattern (22 bp):
ATCAGATACAGATGCAGAGCAT
Found at i:33064069 original size:42 final size:42
Alignment explanation
Indices: 33064013--33064095 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
33064003 CCTCACACTG
* * *
33064013 CCTGGCACAAGGCCGTGTGACTCAAGTCAGTGAGTTACACAT
1 CCTGACACAAGGCCGTGTAACTCAAGTCAGTGACTTACACAT
* *
33064055 CCTGACACATGGCCGTGTAACTTAAGTCAGTGACTTACACA
1 CCTGACACAAGGCCGTGTAACTCAAGTCAGTGACTTACACA
33064096 AGTTGTGCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (42 bp):
CCTGACACAAGGCCGTGTAACTCAAGTCAGTGACTTACACAT
Found at i:33066920 original size:18 final size:17
Alignment explanation
Indices: 33066893--33066927 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
33066883 GCTACAGTAA
33066893 TTAACCATTTTAATTTAG
1 TTAACCA-TTTAATTTAG
*
33066911 TTAACTATTTAATTTAG
1 TTAACCATTTAATTTAG
33066928 CAATACTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (17 bp):
TTAACCATTTAATTTAG
Found at i:33069637 original size:4 final size:4
Alignment explanation
Indices: 33069628--33069654 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
33069618 TTTAGCTTAT
33069628 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
33069655 TTTTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:33073073 original size:18 final size:18
Alignment explanation
Indices: 33073037--33073075 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
33073027 GATGAAAATG
* *
33073037 ATAACAATAATAATGATA
1 ATAACAATAACAATAATA
*
33073055 ATAACAATAACATTAATA
1 ATAACAATAACAATAATA
33073073 ATA
1 ATA
33073076 TTAATAATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.28
Consensus pattern (18 bp):
ATAACAATAACAATAATA
Found at i:33073296 original size:10 final size:11
Alignment explanation
Indices: 33073279--33073310 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
33073269 ATAGTTTTTT
33073279 TAAAAATAAAA
1 TAAAAATAAAA
33073290 T-AAAATAAAA
1 TAAAAATAAAA
33073300 TAAAAATAAAA
1 TAAAAATAAAA
33073311 AAGTGGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:33073311 original size:6 final size:5
Alignment explanation
Indices: 33073281--33073310 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
33073271 AGTTTTTTTA
33073281 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
33073311 AAGTGGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:33074360 original size:112 final size:113
Alignment explanation
Indices: 33074199--33074423 Score: 407
Period size: 112 Copynumber: 2.0 Consensus size: 113
33074189 TCCATATCTT
* *
33074199 TCCTCCTCCTACCGTGCTTCTCCTTCTTCAATTTGTGCAACCAGTTCACTTCACAAAGCTCCAGG
1 TCCTCCTCCTACCGTGCTTCTCATTCTTCAATTTGTGCAACCAGTTCACTTCACAAAGCTCCAAG
*
33074264 TAAGTCATTTATCTCCTTCCTCAAGCTTTATTTGTTATGATTCTAATG
66 TAAGTCATTCATCTCCTTCCTCAAGCTTTATTTGTTATGATTCTAATG
33074312 TCCTCCTCCT-CCGTGCTTCTCATTCTTCAATTTGTGCAACCAGTTCACTTCACAAAGCTCCAAG
1 TCCTCCTCCTACCGTGCTTCTCATTCTTCAATTTGTGCAACCAGTTCACTTCACAAAGCTCCAAG
*
33074376 TAAGTCATTCATCTCCTTCTTCAAGCTTTATTTGTTATGATTCTAATG
66 TAAGTCATTCATCTCCTTCCTCAAGCTTTATTTGTTATGATTCTAATG
33074424 ATCTGGGTTT
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
112 98 0.91
113 10 0.09
ACGTcount: A:0.21, C:0.29, G:0.11, T:0.39
Consensus pattern (113 bp):
TCCTCCTCCTACCGTGCTTCTCATTCTTCAATTTGTGCAACCAGTTCACTTCACAAAGCTCCAAG
TAAGTCATTCATCTCCTTCCTCAAGCTTTATTTGTTATGATTCTAATG
Found at i:33074794 original size:12 final size:12
Alignment explanation
Indices: 33074777--33074803 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33074767 AATAAATCAT
33074777 ATATGTATATTA
1 ATATGTATATTA
33074789 ATATGTATATTA
1 ATATGTATATTA
33074801 ATA
1 ATA
33074804 GAAAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (12 bp):
ATATGTATATTA
Found at i:33075148 original size:21 final size:21
Alignment explanation
Indices: 33075124--33075181 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
33075114 CATTGTTTCT
* *
33075124 AATCTCACTGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
33075145 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
*
33075166 AATCTCACCGCCACAG
1 AATCTCACCGCTACAG
33075182 CTGTTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.31, C:0.36, G:0.10, T:0.22
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:33076969 original size:16 final size:16
Alignment explanation
Indices: 33076948--33076980 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33076938 GGGTATAGGA
33076948 ATTAGTGTTTCAATCT
1 ATTAGTGTTTCAATCT
33076964 ATTAGTGTTTCAATCT
1 ATTAGTGTTTCAATCT
33076980 A
1 A
33076981 CTCCACTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.48
Consensus pattern (16 bp):
ATTAGTGTTTCAATCT
Found at i:33077522 original size:190 final size:189
Alignment explanation
Indices: 33077049--33077572 Score: 735
Period size: 190 Copynumber: 2.8 Consensus size: 189
33077039 CAAGGAAATA
* * * * * *
33077049 AGATTTGTAACTCGCAGCTTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTTGC-ATCTC
1 AGATTTGTGACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTTGCTATCTT
* * * * * *
33077113 CAATCTGCTCCATTACGACTTCAGGGAGATAAGATTGGTGGCTTCAATCTGCCCCACTGCAACTT
66 CAATTTGCTCCACTACAACTTCAGGGAGATGAGATTGGTGGCTTCAATCAGCCCCACTACAACTT
*
33077178 TAAAGAGATAAGATTCGCCATGGTAGATTTAGTCCGACCTACTACAACTCTAAAGGTAT
131 TAAAGAGATAAGATTCGCCATGGTAGATTTAATCCGACCTACTACAACTCTAAAGGTAT
* * *
33077237 AGATTTGTGACTTGTAACTTTAATCTGTTCCACTTCAACTTCAGGGAAATGAGATTCGCTATCTT
1 AGATTTGTGACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTTGCTATCTT
* * * ** *
33077302 CAATTTGCTCTACTAAAACTTCAGGGAGATGAGATTGGTGGCTTTAATCAGTTCTACTACAACTT
66 CAATTTGCTCCACTACAACTTCAGGGAGATGAGATTGGTGGCTTCAATCAGCCCCACTACAACTT
*
33077367 TAAGGAGATAAGATTCGCCATGGTAGATTTAATCCGACCTACTACAACTCTAAAGGTAT
131 TAAAGAGATAAGATTCGCCATGGTAGATTTAATCCGACCTACTACAACTCTAAAGGTAT
* * *
33077426 AGGATTTGTGACTTGTAGCTTTAATCTGTTCTAATGCAACTTCACGGAAATGAGATTTGCTATCT
1 A-GATTTGTGACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTTGCTATCT
* * * * *
33077491 TCAATTTGCTCCACTGCAACTTCAAGGAGATGAGATTTGTGGCTTCAATCTGCCCCACTGCAACT
65 TCAATTTGCTCCACTACAACTTCAGGGAGATGAGATTGGTGGCTTCAATCAGCCCCACTACAACT
* *
33077556 TCAGAGAGATAAGATTC
130 TTAAAGAGATAAGATTC
33077573 ACTACTATGA
Statistics
Matches: 291, Mismatches: 43, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
188 51 0.18
189 115 0.40
190 125 0.43
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (189 bp):
AGATTTGTGACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTTGCTATCTT
CAATTTGCTCCACTACAACTTCAGGGAGATGAGATTGGTGGCTTCAATCAGCCCCACTACAACTT
TAAAGAGATAAGATTCGCCATGGTAGATTTAATCCGACCTACTACAACTCTAAAGGTAT
Found at i:33077552 original size:44 final size:45
Alignment explanation
Indices: 33077460--33077571 Score: 138
Period size: 44 Copynumber: 2.5 Consensus size: 45
33077450 TCTGTTCTAA
* * * * *
33077460 TGCAACTTCACGGAAATGAGATTTGCTATCTTCAATTTGCTCCAC
1 TGCAACTTCAAGGAGATGAGATTTGCTAGCTTCAATCTGCCCCAC
*
33077505 TGCAACTTCAAGGAGATGAGATTTG-TGGCTTCAATCTGCCCCAC
1 TGCAACTTCAAGGAGATGAGATTTGCTAGCTTCAATCTGCCCCAC
*
33077549 TGCAACTTC-AGAGAGATAAGATT
1 TGCAACTTCAAG-GAGATGAGATT
33077572 CACTACTATG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.03
44 34 0.58
45 23 0.39
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (45 bp):
TGCAACTTCAAGGAGATGAGATTTGCTAGCTTCAATCTGCCCCAC
Found at i:33081902 original size:44 final size:44
Alignment explanation
Indices: 33081839--33081926 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
33081829 TAATCCTGAG
33081839 AATCCTTCATACCTTGCTCAAAAGGAGACTCTGAGTCAGTAGCA
1 AATCCTTCATACCTTGCTCAAAAGGAGACTCTGAGTCAGTAGCA
*
33081883 AATCCTTCATACCTTGCTCAAAAGGAGACTCTGAGTTAGTAGCA
1 AATCCTTCATACCTTGCTCAAAAGGAGACTCTGAGTCAGTAGCA
33081927 GTGTCGCTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
AATCCTTCATACCTTGCTCAAAAGGAGACTCTGAGTCAGTAGCA
Found at i:33084104 original size:19 final size:19
Alignment explanation
Indices: 33084059--33084107 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
33084049 AATTATAACA
33084059 ATATAATAATATATTTACTT
1 ATATAATAA-ATATTTACTT
33084079 A-ATTAATAAATATTATA-TT
1 ATA-TAATAAATATT-TACTT
33084098 ATATAATAAA
1 ATATAATAAA
33084108 ATAATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATAATAAATATTTACTT
Found at i:33088168 original size:19 final size:19
Alignment explanation
Indices: 33088152--33088196 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
33088142 TTATGAAACT
*
33088152 TAATGCATATGATGAAATG
1 TAATGCAGATGATGAAATG
*
33088171 TAATGCAGATGAATAAAATG
1 TAATGCAGATG-ATGAAATG
33088191 -AATGCA
1 TAATGCA
33088197 AAAAGAGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (19 bp):
TAATGCAGATGATGAAATG
Found at i:33091750 original size:3 final size:3
Alignment explanation
Indices: 33091742--33091818 Score: 57
Period size: 3 Copynumber: 25.3 Consensus size: 3
33091732 ATGCATAAAC
* * * * *
33091742 AAT AAT AAT AAT GAT GAA- AAT GAT AAC AAT AAT AAT GAT AAT AAC
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
33091787 AAT AAC ATT AAT AAT ATT AAT AAT GAAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT A
33091819 TAAATGTTTG
Statistics
Matches: 55, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
2 2 0.04
3 49 0.89
4 4 0.07
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:33091791 original size:24 final size:24
Alignment explanation
Indices: 33091745--33091809 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
33091735 CATAAACAAT
**
33091745 AATAATAATGATGAA-AATGATAAC
1 AATAATAATGAT-AATAACAATAAC
33091769 AATAATAATGATAATAACAATAAC
1 AATAATAATGATAATAACAATAAC
*
33091793 ATTAATAAT-ATTAATAA
1 AATAATAATGA-TAATAA
33091810 TGAATAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 3 0.08
24 33 0.92
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29
Consensus pattern (24 bp):
AATAATAATGATAATAACAATAAC
Found at i:33098989 original size:16 final size:17
Alignment explanation
Indices: 33098957--33098989 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
33098947 TGTAGTCCAC
*
33098957 ATGTTCAATCTATTTGA
1 ATGTTCAATCGATTTGA
33098974 ATGTTC-ATCGATTTGA
1 ATGTTCAATCGATTTGA
33098990 TTTTTATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (17 bp):
ATGTTCAATCGATTTGA
Found at i:33100073 original size:23 final size:21
Alignment explanation
Indices: 33100042--33100098 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 21
33100032 ATTTTTAAAA
*
33100042 TTTAAAATTTGTTTTATATATTT
1 TTTAAAATTT-TTTT-TAAATTT
*
33100065 TTTAGAATTTTTTTTAAATTT
1 TTTAAAATTTTTTTTAAATTT
33100086 TTATAAATATTTT
1 TT-TAAA-ATTTT
33100099 GAATTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 8 0.28
22 7 0.24
23 14 0.48
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (21 bp):
TTTAAAATTTTTTTTAAATTT
Found at i:33100130 original size:20 final size:18
Alignment explanation
Indices: 33100076--33100140 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 18
33100066 TTAGAATTTT
*
33100076 TTTTAAATTTTTATAAATA
1 TTTTGAATTTTTA-AAATA
*
33100095 TTTTGAATTTTAAAAACTA
1 TTTTGAATTTTTAAAA-TA
33100114 TTTTGAATTTTTGAAAATTA
1 TTTTGAATTTTT-AAAA-TA
33100134 TTTTGAA
1 TTTTGAA
33100141 ACTTTTTTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 3 0.08
19 24 0.60
20 13 0.32
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (18 bp):
TTTTGAATTTTTAAAATA
Found at i:33101064 original size:26 final size:27
Alignment explanation
Indices: 33101026--33101076 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
33101016 ACCAAAGTCT
33101026 ATAACAGATACAGATAT-CAGAATCAG
1 ATAACAGATACAGATATACAGAATCAG
33101052 ATAACCAGA-ACAGATATACAGAATC
1 ATAA-CAGATACAGATATACAGAATC
33101077 CTACCCCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.51, C:0.18, G:0.14, T:0.18
Consensus pattern (27 bp):
ATAACAGATACAGATATACAGAATCAG
Found at i:33104257 original size:51 final size:51
Alignment explanation
Indices: 33104192--33104305 Score: 158
Period size: 51 Copynumber: 2.2 Consensus size: 51
33104182 AGAAAGGATG
* *
33104192 AAAATGGAGAAATGGAGAAATGGAAAACATTTG-GAATGATTATGGTTTTCTCC
1 AAAAT-GA-AAATGGAGAAAT-GAAAACATTTGAAAATGAATATGGTTTTCTCC
* *
33104245 AAAATGAAAATGGAGAAATGAAATCATTTGAAAATGAATGTGGTTTTCTCC
1 AAAATGAAAATGGAGAAATGAAAACATTTGAAAATGAATATGGTTTTCTCC
33104296 AAAATGAAAA
1 AAAATGAAAA
33104306 ATAAAAATGA
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
50 10 0.18
51 39 0.70
52 2 0.04
53 5 0.09
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (51 bp):
AAAATGAAAATGGAGAAATGAAAACATTTGAAAATGAATATGGTTTTCTCC
Found at i:33107316 original size:5 final size:5
Alignment explanation
Indices: 33107306--33107363 Score: 57
Period size: 5 Copynumber: 11.6 Consensus size: 5
33107296 GATATATATA
* * *
33107306 ATAAT ATAAT ATAAT ATAAC ATAAC ATAAC ATAAT ATATTAT ATAAT A-AA-
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA--AT ATAAT ATAAT
33107356 ATAAT ATA
1 ATAAT ATA
33107364 CATAACATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
3 1 0.02
4 4 0.09
5 37 0.79
7 5 0.11
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:33107319 original size:10 final size:10
Alignment explanation
Indices: 33107306--33107373 Score: 61
Period size: 10 Copynumber: 6.9 Consensus size: 10
33107296 GATATATATA
*
33107306 ATAATATAAT
1 ATAATATAAC
33107316 ATAATATAAC
1 ATAATATAAC
*
33107326 ATAACATAAC
1 ATAATATAAC
*
33107336 ATAATATATTAT
1 ATAATATA--AC
33107348 ATAATA-AA-
1 ATAATATAAC
33107356 ATAATAT-AC
1 ATAATATAAC
*
33107365 ATAACATAA
1 ATAATATAA
33107374 AAATCTCATA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
8 7 0.15
9 7 0.15
10 26 0.54
11 1 0.02
12 7 0.15
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.32
Consensus pattern (10 bp):
ATAATATAAC
Found at i:33107377 original size:20 final size:19
Alignment explanation
Indices: 33107301--33107375 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 19
33107291 TTATTGATAT
* *
33107301 ATATA-ATAATATAATATA
1 ATATACATAACATAAAATA
*
33107319 ATATAACATAACATAACATA
1 ATAT-ACATAACATAAAATA
*
33107339 ATATATTATATA-ATAAAATA
1 ATATA-CATA-ACATAAAATA
33107359 ATATACATAACATAAAA
1 ATATACATAACATAAAA
33107376 ATCTCATATT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 5 0.11
19 11 0.23
20 30 0.64
21 1 0.02
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (19 bp):
ATATACATAACATAAAATA
Found at i:33108705 original size:22 final size:23
Alignment explanation
Indices: 33108675--33108718 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
33108665 TTTGAGGTTA
33108675 AAAAAATAAGA-AAAAA-AAGTTT
1 AAAAAATAA-ATAAAAAGAAGTTT
*
33108697 AAAATATAAATAAAAAGAAGTT
1 AAAAAATAAATAAAAAGAAGTT
33108719 AGAAAGGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 13 0.68
23 5 0.26
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.20
Consensus pattern (23 bp):
AAAAAATAAATAAAAAGAAGTTT
Found at i:33109812 original size:25 final size:25
Alignment explanation
Indices: 33109752--33109814 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 25
33109742 ATCGGATTGG
*
33109752 TTAT-TGTAAAGGAAATGTTATGGT
1 TTATATGTAAAGGAAATGTTACGGT
33109776 TATATATGTAAAGGAAATGTTACGGT
1 T-TATATGTAAAGGAAATGTTACGGT
33109802 TTATATGTAAAGG
1 TTATATGTAAAGG
33109815 TACACTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
24 1 0.03
25 15 0.42
26 20 0.56
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.38
Consensus pattern (25 bp):
TTATATGTAAAGGAAATGTTACGGT
Done.