Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 89 of 135
Found at i:33918106 original size:16 final size:16
Alignment explanation
Indices: 33918082--33918119 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
33918072 TTTGGTTCGC
* *
33918082 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
33918098 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
33918114 TGTAAT
1 TGTAAT
33918120 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:33918203 original size:39 final size:43
Alignment explanation
Indices: 33918098--33918207 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
33918088 GGATTAGAGG
33918098 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
33918143 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
33918183 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
33918208 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:33930885 original size:34 final size:35
Alignment explanation
Indices: 33930841--33930917 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 35
33930831 TATCATGTCA
*
33930841 ATAAT-TAAAATTTTAAAA-AAATT-ATAAAAACTT
1 ATAATATAAAATATTAAAATAAATTAAT-AAAACTT
*
33930874 ATAATATAAAATATTAAAATTTAATTAATAAAACTT
1 ATAATATAAAATATTAAAA-TAAATTAATAAAACTT
33930910 A-AATATAA
1 ATAATATAA
33930918 GTAAAATCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 5 0.13
34 12 0.32
35 7 0.18
36 12 0.32
37 2 0.05
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (35 bp):
ATAATATAAAATATTAAAATAAATTAATAAAACTT
Found at i:33933084 original size:16 final size:16
Alignment explanation
Indices: 33933065--33933097 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
33933055 TTATTTAAAA
*
33933065 AATGAGTTAAGTTTCG
1 AATGAGTCAAGTTTCG
33933081 AATGAGTCAAGTTTCG
1 AATGAGTCAAGTTTCG
33933097 A
1 A
33933098 GTAATACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (16 bp):
AATGAGTCAAGTTTCG
Found at i:33933183 original size:17 final size:18
Alignment explanation
Indices: 33933155--33933188 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
33933145 AAAACTGTTG
*
33933155 CTTTTCTTTGCTGTTTTT
1 CTTTTCTTTGCTATTTTT
33933173 CTTTT-TTTGCTATTTT
1 CTTTTCTTTGCTATTTT
33933189 CTTATTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.03, C:0.15, G:0.09, T:0.74
Consensus pattern (18 bp):
CTTTTCTTTGCTATTTTT
Found at i:33933188 original size:16 final size:18
Alignment explanation
Indices: 33933155--33933191 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
33933145 AAAACTGTTG
*
33933155 CTTTTCTTTGCTGTTTTT
1 CTTTTCTTTGCTGATTTT
33933173 CTTTT-TTTGCT-ATTTT
1 CTTTTCTTTGCTGATTTT
33933189 CTT
1 CTT
33933192 ATTACTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 6 0.33
18 5 0.28
ACGTcount: A:0.03, C:0.16, G:0.08, T:0.73
Consensus pattern (18 bp):
CTTTTCTTTGCTGATTTT
Found at i:33933246 original size:12 final size:11
Alignment explanation
Indices: 33933227--33933257 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
33933217 TGTATAACTT
33933227 TTATTTTATTA
1 TTATTTTATTA
33933238 TTAATTTTATTA
1 TT-ATTTTATTA
33933250 TTATTTTA
1 TTATTTTA
33933258 GAGGCATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:33933448 original size:14 final size:15
Alignment explanation
Indices: 33933422--33933454 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
33933412 ATGCCTCTAA
33933422 AATAATAAAAAAATT
1 AATAATAAAAAAATT
33933437 AATAAT-AAAAAATT
1 AATAATAAAAAAATT
33933451 AATA
1 AATA
33933455 TGAACGGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AATAATAAAAAAATT
Found at i:33933629 original size:21 final size:23
Alignment explanation
Indices: 33933604--33933656 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
33933594 TGGGTTTAAA
33933604 AATTTTAATTTTAACTGA-A-TT
1 AATTTTAATTTTAACTGAGATTT
* *
33933625 AATTTTAAATTTAATTGAGATTT
1 AATTTTAATTTTAACTGAGATTT
*
33933648 AATTATAAT
1 AATTTTAAT
33933657 CTAAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 16 0.62
22 1 0.04
23 9 0.35
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (23 bp):
AATTTTAATTTTAACTGAGATTT
Found at i:33934052 original size:7 final size:8
Alignment explanation
Indices: 33934027--33934051 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33934017 TATTGTTTAA
33934027 TTATTTTT
1 TTATTTTT
33934035 TTATTTTT
1 TTATTTTT
33934043 TTATTTTT
1 TTATTTTT
33934051 T
1 T
33934052 ACTGATAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:33938553 original size:19 final size:19
Alignment explanation
Indices: 33938531--33938577 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
33938521 TTTTAATTAA
*
33938531 ATAAAAATATTTTATATAT
1 ATAAAAATATTTTATAAAT
*
33938550 ATAAATACT-TTTTATAAAT
1 ATAAA-AATATTTTATAAAT
*
33938569 TTAAAAATA
1 ATAAAAATA
33938578 ATTATAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
18 2 0.09
19 18 0.82
20 2 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAAAAATATTTTATAAAT
Found at i:33940987 original size:139 final size:139
Alignment explanation
Indices: 33940733--33941012 Score: 515
Period size: 139 Copynumber: 2.0 Consensus size: 139
33940723 TTGGGGTGGG
33940733 AGATGATGTGATGGAGGAAGTGTTGGCAGTTTAATTATATGTCTTATCTAGTGGTTTGAAACCAC
1 AGATGATGTGATGGAGGAAGTGTTGGCAGTTTAATTATATGTCTTATCTAGTGGTTTGAAACCAC
*
33940798 ATATATTTGTTCTGATGGCTCAACCACATACATTAGTTTCTGGCGATTTACCGCATATTATTATC
66 ATATATTTGTTCTGATGGCTCAACCACATAAATTAGTTTCTGGCGATTTACCGCATATTATTATC
33940863 TTGAAGCTT
131 TTGAAGCTT
*
33940872 AGATGATGTGATGGAGGAAGTGTTGGCAGTTTAATTATATGTCTTATCTAGTGGTTTGAAACCAT
1 AGATGATGTGATGGAGGAAGTGTTGGCAGTTTAATTATATGTCTTATCTAGTGGTTTGAAACCAC
* *
33940937 ATATATTTGTTCTGATGGCTCAGCCACATAAATTAGTTTCTGGCGGTTTACCGCATATTATTATC
66 ATATATTTGTTCTGATGGCTCAACCACATAAATTAGTTTCTGGCGATTTACCGCATATTATTATC
*
33941002 TTGCAGCTT
131 TTGAAGCTT
33941011 AG
1 AG
33941013 CTCACTACTT
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 136 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (139 bp):
AGATGATGTGATGGAGGAAGTGTTGGCAGTTTAATTATATGTCTTATCTAGTGGTTTGAAACCAC
ATATATTTGTTCTGATGGCTCAACCACATAAATTAGTTTCTGGCGATTTACCGCATATTATTATC
TTGAAGCTT
Found at i:33944408 original size:13 final size:13
Alignment explanation
Indices: 33944390--33944415 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33944380 TAAAACATGT
33944390 ATAACTAAGTTTA
1 ATAACTAAGTTTA
33944403 ATAACTAAGTTTA
1 ATAACTAAGTTTA
33944416 TGCCAAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
ATAACTAAGTTTA
Found at i:33945105 original size:38 final size:38
Alignment explanation
Indices: 33945001--33945198 Score: 254
Period size: 38 Copynumber: 5.2 Consensus size: 38
33944991 ATAAATTTTC
* *
33945001 AATA-CACCAGCACAAAGCCTGCTAGGCACATAGCTCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACATAGCCCG
* * *
33945038 AATAACACCGGCACACAAAGCCTGTTAGGCACGTAGCCCG
1 AATATCACCGG--CACAAAGCCTGCTAGGCACATAGCCCG
* **
33945078 AATATCACTGGCACAAAGCCTGCTAGGCACATAGCCTT
1 AATATCACCGGCACAAAGCCTGCTAGGCACATAGCCCG
* *
33945116 AATATCACCGGCAAAAAGCCTGCTAGGCACATAGCTCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACATAGCCCG
* * *
33945154 AATAACATCGGCACAAAGCCTGCTAGGCACATAGCCCA
1 AATATCACCGGCACAAAGCCTGCTAGGCACATAGCCCG
33945192 AATATCA
1 AATATCA
33945199 TTACGTTTCT
Statistics
Matches: 137, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
37 4 0.03
38 100 0.73
40 33 0.24
ACGTcount: A:0.35, C:0.30, G:0.19, T:0.16
Consensus pattern (38 bp):
AATATCACCGGCACAAAGCCTGCTAGGCACATAGCCCG
Found at i:33945985 original size:11 final size:11
Alignment explanation
Indices: 33945969--33945996 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
33945959 TTTGTTTTAC
33945969 TTAATTTTATT
1 TTAATTTTATT
33945980 TTAATTTTATT
1 TTAATTTTATT
33945991 TTAATT
1 TTAATT
33945997 ACAATTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTAATTTTATT
Found at i:33947111 original size:29 final size:29
Alignment explanation
Indices: 33947079--33947172 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 29
33947069 GTGTGGTAAG
*
33947079 CCATGTGACAAACCGTGTGGGTCACACGG
1 CCATGTGACAAACCGTGTGGGTCACACGA
** * *
33947108 CCATGT-AGTTAGCCGTGTGGGTAACACGA
1 CCATGTGA-CAAACCGTGTGGGTCACACGA
* * **
33947137 TCGTGTGACAGCCCGTGTGGGTCACACGA
1 CCATGTGACAAACCGTGTGGGTCACACGA
33947166 CCATGTG
1 CCATGTG
33947173 GTTAGCCTTG
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
28 1 0.02
29 47 0.96
30 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (29 bp):
CCATGTGACAAACCGTGTGGGTCACACGA
Found at i:33947153 original size:58 final size:58
Alignment explanation
Indices: 33947082--33947193 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
33947072 TGGTAAGCCA
*
33947082 TGTGACAAACCGTGTGGGTCACACGGCCATGTAGTTAGCCGTGTGGGTAACACGATCG
1 TGTGACAAACCGTGTGGGTCACACGACCATGTAGTTAGCCGTGTGGGTAACACGATCG
** * * *
33947140 TGTGACAGCCCGTGTGGGTCACACGACCATGTGGTTAGCCTTGTGGGTTACACG
1 TGTGACAAACCGTGTGGGTCACACGACCATGTAGTTAGCCGTGTGGGTAACACG
33947194 TCTATGTGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (58 bp):
TGTGACAAACCGTGTGGGTCACACGACCATGTAGTTAGCCGTGTGGGTAACACGATCG
Found at i:33947214 original size:29 final size:29
Alignment explanation
Indices: 33947091--33947203 Score: 111
Period size: 29 Copynumber: 3.9 Consensus size: 29
33947081 ATGTGACAAA
* *
33947091 CCGTGTGGGTCACACGGCCATGTAGTTAG
1 CCGTGTGGGTCACACGACCATGTGGTTAG
* * * **
33947120 CCGTGTGGGTAACACGATCGTGT-GACAG
1 CCGTGTGGGTCACACGACCATGTGGTTAG
33947148 CCCGTGTGGGTCACACGACCATGTGGTTAG
1 -CCGTGTGGGTCACACGACCATGTGGTTAG
* * * *
33947178 CCTTGTGGGTTACACGTCTATGTGGT
1 CCGTGTGGGTCACACGACCATGTGGT
33947204 AGGTCGTGTG
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 3 0.04
29 61 0.91
30 3 0.04
ACGTcount: A:0.17, C:0.23, G:0.34, T:0.27
Consensus pattern (29 bp):
CCGTGTGGGTCACACGACCATGTGGTTAG
Found at i:33949618 original size:22 final size:22
Alignment explanation
Indices: 33949590--33949633 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33949580 ATAGACTATG
* * *
33949590 ATTTAAGGATAAGAATCAAATT
1 ATTTAAGAATAAAAATAAAATT
33949612 ATTTAAGAATAAAAATAAAATT
1 ATTTAAGAATAAAAATAAAATT
33949634 CAAGGAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (22 bp):
ATTTAAGAATAAAAATAAAATT
Found at i:33953357 original size:45 final size:43
Alignment explanation
Indices: 33953161--33953510 Score: 123
Period size: 44 Copynumber: 7.9 Consensus size: 43
33953151 TGTCTTGGAA
** * *
33953161 AGATAAGATTTGCTGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGA-TTGCCATCTTCAATCTGCTCCACTACTGCTTAGAG
* * * * * * * *
33953205 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGAT-TGCCATCTTCAATCTGCTCCACTACTGCTTAGAG
* * **** * * * *
33953249 AGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTA-T-CTTGGAA
1 AGATAA-GATTGCCATCTTCAATCTGC-T-CCACTACTGCTTAGAG
* * * *
33953293 AGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTTAGAG
1 AGATAAGATT-GCCATCTTCAATCTGCTCCACTACTGC-TTAGAG
* * * * *
33953338 AGATAAGATCTGCCATCTTCAACCTTCTCCACTGCTGCTCAGGG
1 AGATAAGAT-TGCCATCTTCAATCTGCTCCACTACTGCTTAGAG
* * **** * * *
33953382 AGACAATGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTGGAA
1 AGATAA-GATTGCCATCTTCAATCTGC-T-CCACTACTGCTTAGAG
* * * *
33953426 AGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTTAGAG
1 AGATAAGATT-GCCATCTTCAATCTGCTCCACTACTGC-TTAGAG
* * *
33953471 AGATAAGATCTGCCATCTTCAACCTTCTCCACTGCTGCTT
1 AGATAAGAT-TGCCATCTTCAATCTGCTCCACTACTGCTT
33953511 CCCACTTTTA
Statistics
Matches: 212, Mismatches: 77, Indels: 34
0.66 0.24 0.11
Matches are distributed among these distances:
42 10 0.05
43 11 0.05
44 106 0.50
45 74 0.35
46 11 0.05
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (43 bp):
AGATAAGATTGCCATCTTCAATCTGCTCCACTACTGCTTAGAG
Found at i:33953399 original size:133 final size:133
Alignment explanation
Indices: 33953089--33953509 Score: 675
Period size: 133 Copynumber: 3.2 Consensus size: 133
33953079 AGACTTGTAG
** * * * * * *
33953089 CTTCAACCTTCTCTGCTACTGCCCAGGGAGACAAGGCTTGGTGGCTTTAATCTACTTCCCATTGT
1 CTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * *
33953154 CTTGGAAAGATAAGATTTG-CTGTCTTCGATCTGCTCCACTACTGC-TTAGGGAGATAAGATCTA
66 CTTGGAAAGATAAGATTCGTC-GTCTTCGATCTGCTCTACTACTGCTTTAGAGAGATAAGATCTG
*
33953217 CAAT
130 CCAT
* *
33953221 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTAT
1 CTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
33953286 CTTGGAAAGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTTAGAGAGATAAGATCTGC
66 CTTGGAAAGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTTAGAGAGATAAGATCTGC
33953351 CAT
131 CAT
*
33953354 CTTCAACCTTCTCCACTGCTGCTCAGGGAGACAATGCTTGGTGGCTTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
33953419 CTTGGAAAGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTTAGAGAGATAAGATCTGC
66 CTTGGAAAGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTTAGAGAGATAAGATCTGC
33953484 CAT
131 CAT
33953487 CTTCAACCTTCTCCACTGCTGCT
1 CTTCAACCTTCTCCACTGCTGCT
33953510 TCCCACTTTT
Statistics
Matches: 271, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
132 98 0.36
133 173 0.64
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (133 bp):
CTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
CTTGGAAAGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTTAGAGAGATAAGATCTGC
CAT
Found at i:33965335 original size:21 final size:22
Alignment explanation
Indices: 33965309--33965355 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
33965299 ATATACATAT
33965309 AAATAT-GAAAATATTCATTAA
1 AAATATAGAAAATATTCATTAA
**
33965330 AAATATAGGAAAATATTTGTTAA
1 AAATATA-GAAAATATTCATTAA
33965353 AAA
1 AAA
33965356 AATATATATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.27
23 16 0.73
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (22 bp):
AAATATAGAAAATATTCATTAA
Found at i:33967331 original size:3 final size:3
Alignment explanation
Indices: 33967323--33967358 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
33967313 TTTTTCACCC
33967323 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33967359 CAATCCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33967599 original size:3 final size:3
Alignment explanation
Indices: 33967529--33967580 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
33967519 TTTTTCACCC
33967529 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33967577 TTA T
1 TTA T
33967581 ATGATTATCG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33970336 original size:15 final size:16
Alignment explanation
Indices: 33970310--33970345 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
33970300 TCACTTTTTT
33970310 GGCCTGGGCCCGACCC
1 GGCCTGGGCCCGACCC
33970326 GGCCT-GGCCCGACCC
1 GGCCTGGGCCCGACCC
33970341 GGCCT
1 GGCCT
33970346 AAATATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.06, C:0.50, G:0.36, T:0.08
Consensus pattern (16 bp):
GGCCTGGGCCCGACCC
Found at i:33973394 original size:60 final size:60
Alignment explanation
Indices: 33973329--33973444 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
33973319 TTTTTTTTTT
* * * * *
33973329 AATTTTT-AGAATTGGAACTAAATTGATAAATTTTGTAAATGTTGAGGGCTAAATTTATTG
1 AATTTTTAAG-ATTGGAACTAAAATAACAAATTTTGTAAATATTGAGGACTAAATTTATTG
* * *
33973389 AATTTTTAAGATTTGAATTAAAATAACAAATTTTGTAAATATTGAGGATTAAATTT
1 AATTTTTAAGATTGGAACTAAAATAACAAATTTTGTAAATATTGAGGACTAAATTT
33973445 GTTTAGTATT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
60 45 0.96
61 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.42
Consensus pattern (60 bp):
AATTTTTAAGATTGGAACTAAAATAACAAATTTTGTAAATATTGAGGACTAAATTTATTG
Found at i:33975713 original size:21 final size:21
Alignment explanation
Indices: 33975675--33975718 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
33975665 ATATGTAGTG
* *
33975675 ATACAATATGTATTATCTGTT
1 ATACAATATGTATGATCTATT
* *
33975696 ATACAATTTGTCTGATCTATT
1 ATACAATATGTATGATCTATT
33975717 AT
1 AT
33975719 TCATCAAGCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (21 bp):
ATACAATATGTATGATCTATT
Found at i:33978249 original size:5 final size:5
Alignment explanation
Indices: 33978239--33978263 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
33978229 GTTAATGTGG
33978239 GAGTT GAGTT GAGTT GAGTT GAGTT
1 GAGTT GAGTT GAGTT GAGTT GAGTT
33978264 TTTATATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
GAGTT
Found at i:33986004 original size:141 final size:141
Alignment explanation
Indices: 33985750--33986031 Score: 546
Period size: 141 Copynumber: 2.0 Consensus size: 141
33985740 NNNNNNNNNN
33985750 ATCTTGAGCTACAGAACTCTAAATTAGGATCCGCTAATTTTCCCTAAAACTAGACTTACATATAT
1 ATCTTGAGCTACAGAACTCTAAATTAGGATCCGCTAATTTTCCCTAAAACTAGACTTACATATAT
33985815 TCTTACCATAAAATTTTCAAAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTCAC
66 TCTTACCATAAAATTTTCAAAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTCAC
33985880 CTCTGTTCTGC
131 CTCTGTTCTGC
33985891 ATCTTGAGCTACAGAACTCTAAATTAGGATCCGCTAATTTTCCCTAAAACTAGACTTACATATAT
1 ATCTTGAGCTACAGAACTCTAAATTAGGATCCGCTAATTTTCCCTAAAACTAGACTTACATATAT
* *
33985956 TCTTACCATAAAATTTTCAAAATTTTTGGTTTAGTCAATAAGTGCAGTTTATTCTTTAAAGTCAC
66 TCTTACCATAAAATTTTCAAAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTCAC
33986021 CTCTGTTCTGC
131 CTCTGTTCTGC
33986032 TGTCTAACAG
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
141 139 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (141 bp):
ATCTTGAGCTACAGAACTCTAAATTAGGATCCGCTAATTTTCCCTAAAACTAGACTTACATATAT
TCTTACCATAAAATTTTCAAAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTCAC
CTCTGTTCTGC
Found at i:33990630 original size:22 final size:23
Alignment explanation
Indices: 33990581--33990630 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
33990571 AAACTTGAAT
*
33990581 TATAAATTTTTAAAAATAAAGAA
1 TATAAATTCTTAAAAATAAAGAA
*
33990604 T-TAAATTCTTAAAAATAGA-AA
1 TATAAATTCTTAAAAATAAAGAA
33990625 TATAAA
1 TATAAA
33990631 AATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.12
22 20 0.83
23 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (23 bp):
TATAAATTCTTAAAAATAAAGAA
Found at i:34000744 original size:69 final size:67
Alignment explanation
Indices: 34000603--34000732 Score: 152
Period size: 69 Copynumber: 1.9 Consensus size: 67
34000593 GATTTCGAAT
* * * * ** *
34000603 TGTCCCAACCTCCAATCCATGCCCCCAACATGCTTCCACGCTCTCTTTCTTATTTGTGGATCGGA
1 TGTCCCAACCTCCAATCCATGCCCCAAACATGCTCCCACCCTCTCTTTCTCATTTGTACATAGGA
34000668 AG
66 AG
* * *
34000670 TTGTCCCAAGCTCCAATCCATGTCGCCAAACATGCTCCCTCCCTCTCTTTCTCATTTGTACAT
1 -TGTCCCAACCTCCAATCCATG-CCCCAAACATGCTCCCACCCTCTCTTTCTCATTTGTACAT
34000733 TAGTGAATGT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
68 20 0.38
69 32 0.62
ACGTcount: A:0.19, C:0.37, G:0.12, T:0.32
Consensus pattern (67 bp):
TGTCCCAACCTCCAATCCATGCCCCAAACATGCTCCCACCCTCTCTTTCTCATTTGTACATAGGA
AG
Found at i:34004631 original size:22 final size:22
Alignment explanation
Indices: 34004605--34004650 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
34004595 TTGGGTTTTG
*
34004605 TTTGAAGAGAAAAATATTGGGT
1 TTTGAAGAGAAAAATAATGGGT
* *
34004627 TTTGATGAGAAAATTAATGGGT
1 TTTGAAGAGAAAAATAATGGGT
34004649 TT
1 TT
34004651 GGAGGGAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (22 bp):
TTTGAAGAGAAAAATAATGGGT
Found at i:34009545 original size:18 final size:18
Alignment explanation
Indices: 34009512--34009546 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34009502 TGGAAAGGTC
*
34009512 ATATATATATGTATGTAT
1 ATATATATATGCATGTAT
*
34009530 ATATATATTTGCATGTA
1 ATATATATATGCATGTA
34009547 CAAGGAAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49
Consensus pattern (18 bp):
ATATATATATGCATGTAT
Found at i:34013419 original size:38 final size:38
Alignment explanation
Indices: 34013366--34013442 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
34013356 GGTTGAGGAA
34013366 AGGGAAAAAAAAGCAATTACTTTACCAAAATGGATCCC
1 AGGGAAAAAAAAGCAATTACTTTACCAAAATGGATCCC
*
34013404 AGGGAAAAAAGAGCAATTACTTTACCAAAATGGATCCC
1 AGGGAAAAAAAAGCAATTACTTTACCAAAATGGATCCC
34013442 A
1 A
34013443 ATACAAGAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.18, G:0.17, T:0.18
Consensus pattern (38 bp):
AGGGAAAAAAAAGCAATTACTTTACCAAAATGGATCCC
Found at i:34016331 original size:15 final size:15
Alignment explanation
Indices: 34016311--34016344 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
34016301 TTGTATTTTA
34016311 TTTTAATTTAATTAT
1 TTTTAATTTAATTAT
**
34016326 TTTTAATTTTTTTAT
1 TTTTAATTTAATTAT
34016341 TTTT
1 TTTT
34016345 CGAATTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTAATTTAATTAT
Found at i:34016403 original size:30 final size:30
Alignment explanation
Indices: 34016367--34016423 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
34016357 TTTTAGCTCT
*
34016367 AAATAAATTATATTTATTAAATTCATTAAA
1 AAATAAATGATATTTATTAAATTCATTAAA
*
34016397 AAATAAATGGTATTTATTAAATTCATT
1 AAATAAATGATATTTATTAAATTCATT
34016424 GAATTAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATAAATGATATTTATTAAATTCATTAAA
Found at i:34018146 original size:10 final size:10
Alignment explanation
Indices: 34018128--34018192 Score: 51
Period size: 11 Copynumber: 6.3 Consensus size: 10
34018118 AAAAAAACAT
34018128 AATTGTTTAAA
1 AATT-TTTAAA
34018139 AATTTTTAAAA
1 AATTTTT-AAA
*
34018150 AATTTATAAA
1 AATTTTTAAA
* *
34018160 AATTATTAGA
1 AATTTTTAAA
*
34018170 AA-TTGTAAA
1 AATTTTTAAA
*
34018179 ATATTATTAAA
1 A-ATTTTTAAA
34018190 AAT
1 AAT
34018193 AGTAAAAATT
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
9 5 0.12
10 18 0.43
11 19 0.45
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.42
Consensus pattern (10 bp):
AATTTTTAAA
Found at i:34018172 original size:20 final size:21
Alignment explanation
Indices: 34018128--34018200 Score: 71
Period size: 20 Copynumber: 3.6 Consensus size: 21
34018118 AAAAAAACAT
* *
34018128 AATTGTTTAAAAATTTTTAAAA
1 AATTGTATAAAAATTATT-AAA
*
34018150 AATT-TATAAAAATTATTAGA
1 AATTGTATAAAAATTATTAAA
*
34018170 AATTGTA-AAATATTATTAAA
1 AATTGTATAAAAATTATTAAA
*
34018190 AATAGTA-AAAA
1 AATTGTATAAAA
34018201 TTGTTATTGG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 26 0.60
21 13 0.30
22 4 0.09
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
AATTGTATAAAAATTATTAAA
Found at i:34018201 original size:29 final size:28
Alignment explanation
Indices: 34018148--34018204 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
34018138 AAATTTTTAA
* *
34018148 AAAATTTATAAAAATTATTAGAAATTGT
1 AAAATTTATAAAAATTAGTAAAAATTGT
34018176 AAAATATTATTAAAAA-TAGTAAAAATTGT
1 AAAAT-TTA-TAAAAATTAGTAAAAATTGT
34018205 TATTGGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.20
29 14 0.56
30 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (28 bp):
AAAATTTATAAAAATTAGTAAAAATTGT
Found at i:34018450 original size:16 final size:15
Alignment explanation
Indices: 34018404--34018451 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 15
34018394 CATTTTTCTA
34018404 ATTTTTAGTAATTTTT
1 ATTTTT-GTAATTTTT
*
34018420 ATATTTTATATATTTTGT
1 AT-TTTTGTA-ATTTT-T
34018438 ATTTTTGTAATTTT
1 ATTTTTGTAATTTT
34018452 AAAAGATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 9 0.33
17 15 0.56
18 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (15 bp):
ATTTTTGTAATTTTT
Found at i:34025491 original size:14 final size:15
Alignment explanation
Indices: 34025472--34025500 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
34025462 GGGATTTTTC
34025472 TATATAT-ATATTTG
1 TATATATGATATTTG
34025486 TATATATGATATTTG
1 TATATATGATATTTG
34025501 AATAAACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
TATATATGATATTTG
Found at i:34034803 original size:4 final size:4
Alignment explanation
Indices: 34034796--34034820 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
34034786 TAAGTATCTG
34034796 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
34034821 ATAGTACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:34040613 original size:5 final size:5
Alignment explanation
Indices: 34040605--34040631 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
34040595 ATTATTTGAT
34040605 TTAAA TTAAA TTAAA TTAAA TTAAA TT
1 TTAAA TTAAA TTAAA TTAAA TTAAA TT
34040632 TTTTTAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAA
Found at i:34046301 original size:32 final size:32
Alignment explanation
Indices: 34046257--34046320 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
34046247 TTAAGTTAGT
34046257 TAAGTTATAATTTATTTAGATCAAGAACGGAA
1 TAAGTTATAATTTATTTAGATCAAGAACGGAA
34046289 TAAGTT-TGAATTTATTTAGATCAAGAACGGAA
1 TAAGTTAT-AATTTATTTAGATCAAGAACGGAA
34046321 GAAAACAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.34
Consensus pattern (32 bp):
TAAGTTATAATTTATTTAGATCAAGAACGGAA
Found at i:34046332 original size:32 final size:32
Alignment explanation
Indices: 34046265--34046332 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
34046255 GTTAAGTTAT
* ****
34046265 AATTTATTTAGATCAAGAACGGAATAAGTTTG
1 AATTTATTTAGATCAAGAACGGAAGAAAACAG
34046297 AATTTATTTAGATCAAGAACGGAAGAAAACAG
1 AATTTATTTAGATCAAGAACGGAAGAAAACAG
34046329 AATT
1 AATT
34046333 ATATCGGGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (32 bp):
AATTTATTTAGATCAAGAACGGAAGAAAACAG
Found at i:34048134 original size:15 final size:15
Alignment explanation
Indices: 34048114--34048142 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
34048104 ACGTATTTTC
34048114 TTCATTCAATTCAAT
1 TTCATTCAATTCAAT
34048129 TTCATTCAATTCAA
1 TTCATTCAATTCAA
34048143 ATCAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (15 bp):
TTCATTCAATTCAAT
Found at i:34048593 original size:16 final size:17
Alignment explanation
Indices: 34048568--34048600 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
34048558 TTATAGCTTA
34048568 CTTTACCAA-TCTAATC
1 CTTTACCAATTCTAATC
*
34048584 CTTTATCAATTCTAATC
1 CTTTACCAATTCTAATC
34048601 AATAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.42
Consensus pattern (17 bp):
CTTTACCAATTCTAATC
Found at i:34048930 original size:16 final size:17
Alignment explanation
Indices: 34048903--34048935 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
34048893 TTGTTTATTA
34048903 TTTAATAGATATAATAT
1 TTTAATAGATATAATAT
34048920 TTTAATA-ATATAATAT
1 TTTAATAGATATAATAT
34048936 AATAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (17 bp):
TTTAATAGATATAATAT
Found at i:34048941 original size:16 final size:17
Alignment explanation
Indices: 34048905--34048942 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
34048895 GTTTATTATT
**
34048905 TAATAGATATAATATTT
1 TAATAGATATAATATAA
34048922 TAATA-ATATAATATAA
1 TAATAGATATAATATAA
34048938 TAATA
1 TAATA
34048943 TTTTATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TAATAGATATAATATAA
Found at i:34049486 original size:43 final size:43
Alignment explanation
Indices: 34049391--34049498 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 43
34049381 GCGTCATTAC
* * *
34049391 ACCACGTCTGGGACGTTGGCATCGATTTGTGTTTACATGTAAG
1 ACCACGTCTGGGACGTTGGCATCGATATGTGATTACACGTAAG
* *
34049434 AGCC-TGTCTGGGACAG-TGGCATCGATATGTGATTACACGTAAT
1 A-CCACGTCTGGGAC-GTTGGCATCGATATGTGATTACACGTAAG
* *
34049477 ACCACGTCTGGAATGTTGGCAT
1 ACCACGTCTGGGACGTTGGCAT
34049499 TGTACGAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
42 3 0.06
43 47 0.89
44 3 0.06
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
ACCACGTCTGGGACGTTGGCATCGATATGTGATTACACGTAAG
Found at i:34055487 original size:18 final size:18
Alignment explanation
Indices: 34055466--34055503 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
34055456 AAACAATTCA
*
34055466 ATTTATCACATACCATAT
1 ATTTATCACATAACATAT
34055484 ATTTATCACATAACATAT
1 ATTTATCACATAACATAT
34055502 AT
1 AT
34055504 ATATTAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (18 bp):
ATTTATCACATAACATAT
Found at i:34058605 original size:14 final size:14
Alignment explanation
Indices: 34058586--34058612 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34058576 AGAAGAGAAC
34058586 GAAAAAAAAGAAAA
1 GAAAAAAAAGAAAA
34058600 GAAAAAAAAGAAA
1 GAAAAAAAAGAAA
34058613 GTTCAAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
GAAAAAAAAGAAAA
Found at i:34060805 original size:11 final size:11
Alignment explanation
Indices: 34060789--34060818 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
34060779 CATTATTTAT
34060789 TAAATAAAATA
1 TAAATAAAATA
34060800 TAAATAAAATA
1 TAAATAAAATA
34060811 TAATATAA
1 TAA-ATAA
34060819 TTAAGACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
TAAATAAAATA
Found at i:34070340 original size:21 final size:21
Alignment explanation
Indices: 34070314--34070372 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
34070304 CACCATTGTT
*
34070314 TTTAATCTCATTGCTACAGTA
1 TTTAATCTCATCGCTACAGTA
* *
34070335 TTTAATCTCACCGCTATAGTA
1 TTTAATCTCATCGCTACAGTA
**
34070356 ACTAATCTCATCGCTAC
1 TTTAATCTCATCGCTAC
34070373 CGCTGTTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (21 bp):
TTTAATCTCATCGCTACAGTA
Found at i:34077981 original size:103 final size:103
Alignment explanation
Indices: 34077802--34078008 Score: 333
Period size: 103 Copynumber: 2.0 Consensus size: 103
34077792 TCTATAGATA
* **
34077802 TATAAAGAAGGGTAAATTATAAAAATAGTCACTTTTGTTTATTTCAGATTACATTTTAGTCATTT
1 TATAAAAAAGGGTAAATTATAAAAATAGTCACTTTTGTTTACCTCAGATTACATTTTAGTCATTT
*
34077867 ATGTTTGAAATGTTATGTTTTAGTCACTTACATTATCG
66 ATGTTTAAAATGTTATGTTTTAGTCACTTACATTATCG
* * *
34077905 TATAAAAAAGGGTAAATTGTGAAAATAGTCACTTTTGTTTGCCTCAGATTACATTTTAGTCATTT
1 TATAAAAAAGGGTAAATTATAAAAATAGTCACTTTTGTTTACCTCAGATTACATTTTAGTCATTT
**
34077970 ATGTTTAAAATGTTATGTTTTAGTCACTTATGTTATCG
66 ATGTTTAAAATGTTATGTTTTAGTCACTTACATTATCG
34078008 T
1 T
34078009 TTTGTTACGA
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 95 1.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.44
Consensus pattern (103 bp):
TATAAAAAAGGGTAAATTATAAAAATAGTCACTTTTGTTTACCTCAGATTACATTTTAGTCATTT
ATGTTTAAAATGTTATGTTTTAGTCACTTACATTATCG
Found at i:34078974 original size:22 final size:21
Alignment explanation
Indices: 34078948--34078992 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
34078938 TGGATGGTAC
34078948 ATTTTTTGTGA-ATATTATTTAA
1 ATTTTTT-TGATATATT-TTTAA
*
34078970 ATTTTTTTTATATATTTTTAA
1 ATTTTTTTGATATATTTTTAA
34078991 AT
1 AT
34078993 GATTTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
ATTTTTTTGATATATTTTTAA
Found at i:34078975 original size:21 final size:21
Alignment explanation
Indices: 34078950--34078992 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
34078940 GATGGTACAT
34078950 TTTTTGTGA-ATATTATTTAAA
1 TTTTTGTGATATATT-TTTAAA
* *
34078971 TTTTTTTTATATATTTTTAAA
1 TTTTTGTGATATATTTTTAAA
34078992 T
1 T
34078993 GATTTATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (21 bp):
TTTTTGTGATATATTTTTAAA
Found at i:34080667 original size:3 final size:3
Alignment explanation
Indices: 34080647--34080689 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
34080637 AAAACGACAG
* *
34080647 AGA AGG AGA AGG AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
34080690 ATGGACACAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:34084896 original size:18 final size:19
Alignment explanation
Indices: 34084873--34084911 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
34084863 TATTAAATAC
34084873 AATATATAAAATTT-TTAA
1 AATATATAAAATTTATTAA
* *
34084891 AATATATTATATTTATTAA
1 AATATATAAAATTTATTAA
34084910 AA
1 AA
34084912 ATCATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AATATATAAAATTTATTAA
Found at i:34085761 original size:31 final size:29
Alignment explanation
Indices: 34085697--34085762 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
34085687 ATGATAACGT
* *
34085697 AAGTGACTAAAATGTAACATATCAAACAC
1 AAGTGACTAAAATGTAACATAACAAACAA
34085726 AAGTGACTAAAATGTAATC-TAAGACAAACAA
1 AAGTGACTAAAATGTAA-CAT-A-ACAAACAA
34085757 AAGTGA
1 AAGTGA
34085763 TTATTTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 18 0.56
30 2 0.06
31 12 0.38
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.20
Consensus pattern (29 bp):
AAGTGACTAAAATGTAACATAACAAACAA
Found at i:34086360 original size:32 final size:35
Alignment explanation
Indices: 34086307--34086379 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 35
34086297 TTATTATAAA
* *
34086307 ATAA-ATTTTGATTGTTAAAAGAA-AAT-TATATT
1 ATAATATTTTGATTGTTAAAAGAATAATATAAAAT
34086339 ATAATATTTTG-TT-TTACAAAGAATAATATAAAAT
1 ATAATATTTTGATTGTTA-AAAGAATAATATAAAAT
34086373 ATAATAT
1 ATAATAT
34086380 ATAAAATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
31 3 0.09
32 12 0.34
33 9 0.26
34 11 0.31
ACGTcount: A:0.49, C:0.01, G:0.07, T:0.42
Consensus pattern (35 bp):
ATAATATTTTGATTGTTAAAAGAATAATATAAAAT
Found at i:34087202 original size:42 final size:41
Alignment explanation
Indices: 34087144--34087278 Score: 148
Period size: 42 Copynumber: 3.2 Consensus size: 41
34087134 TAGATGTTAC
* *
34087144 TTAGTATTATTGTTAGTAAAAAACTAATATTATTATTATGG
1 TTAGTATTATTTTTAGTAAAAAACTAATATTATTGTTATGG
**
34087185 TTAGTTATTATTTTTAGTAAAACCCTAATTATTATTGTTA--G
1 TTAG-TATTATTTTTAGTAAAAAACTAA-TATTATTGTTATGG
* * *
34087226 TTAGTATTATTTTGAGTATAAAACTATTATTATTGTTATTGTG
1 TTAGTATTATTTTTAGTAAAAAACTAATATTATTGTTA-TG-G
34087269 TTAGTTATTA
1 TTAG-TATTA
34087279 GGATTAGTGG
Statistics
Matches: 78, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
39 11 0.14
40 18 0.23
41 9 0.12
42 20 0.26
43 15 0.19
44 5 0.06
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.51
Consensus pattern (41 bp):
TTAGTATTATTTTTAGTAAAAAACTAATATTATTGTTATGG
Found at i:34089105 original size:12 final size:11
Alignment explanation
Indices: 34089090--34089123 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
34089080 AAAAAATTAT
34089090 AAAAATGATAAA
1 AAAAAT-ATAAA
*
34089102 AAAAATCTAAA
1 AAAAATATAAA
34089113 AAAAATATAAA
1 AAAAATATAAA
34089124 GCAAGTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAAATATAAA
Found at i:34091828 original size:14 final size:16
Alignment explanation
Indices: 34091794--34091829 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
34091784 AAACAACTTA
*
34091794 ATATAAGCAAATATTT
1 ATATAAACAAATATTT
34091810 ATATAAACAAATATTT
1 ATATAAACAAATATTT
34091826 ATAT
1 ATAT
34091830 TTATGTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.39
Consensus pattern (16 bp):
ATATAAACAAATATTT
Found at i:34098522 original size:117 final size:117
Alignment explanation
Indices: 34098314--34098524 Score: 359
Period size: 117 Copynumber: 1.8 Consensus size: 117
34098304 TTTGATTTGT
* * * *
34098314 TGGTTATTTGTGATTTATTATTGCAATTTTAGTGCCATAATGTAGGGTTTGTTTTGTCGATTTTT
1 TGGTTAATTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
* * *
34098379 GATGCGATAGTGGTCCCGATGTTGTTGATAAAACTGTTGTCAAAATTGTAGA
66 GATGCAAAAGTGGTCCCGATGATGTTGATAAAACTGTTGTCAAAATTGTAGA
34098431 TGGTTAATTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
1 TGGTTAATTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
34098496 GATGCAAAAGTGGTCCCGATGATGTTGAT
66 GATGCAAAAGTGGTCCCGATGATGTTGAT
34098525 TTCTGTTACC
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 87 1.00
ACGTcount: A:0.23, C:0.09, G:0.25, T:0.43
Consensus pattern (117 bp):
TGGTTAATTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGT
GATGCAAAAGTGGTCCCGATGATGTTGATAAAACTGTTGTCAAAATTGTAGA
Found at i:34105284 original size:37 final size:37
Alignment explanation
Indices: 34105234--34105318 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
34105224 TGACAAAGGT
* * ** * * *
34105234 CAAAACCACAATTAATTTTGATGGTAATGGGTTGGAA
1 CAAAAACACAATTAACTTCAATGGCAATGAGTTGAAA
34105271 CAAAAACACAATTAACTTCAATGGCAATGAGTTGAAA
1 CAAAAACACAATTAACTTCAATGGCAATGAGTTGAAA
34105308 CAAAAAC-CAAT
1 CAAAAACACAAT
34105319 GCATTGAAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 4 0.10
37 37 0.90
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (37 bp):
CAAAAACACAATTAACTTCAATGGCAATGAGTTGAAA
Found at i:34105536 original size:18 final size:19
Alignment explanation
Indices: 34105513--34105550 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
34105503 ATGTCTCAAA
*
34105513 TATATACAAA-ATATGCTT
1 TATATACAAAGATATACTT
34105531 TATATACAAAGATATACTT
1 TATATACAAAGATATACTT
34105550 T
1 T
34105551 TTCATAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (19 bp):
TATATACAAAGATATACTT
Found at i:34106593 original size:17 final size:17
Alignment explanation
Indices: 34106571--34106609 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
34106561 TTTACCTTTT
*
34106571 AACTTAATTAATGGGTA
1 AACTTAATTAATGGGAA
*
34106588 AACTTAATTGATGGGAA
1 AACTTAATTAATGGGAA
34106605 AACTT
1 AACTT
34106610 TTATCAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (17 bp):
AACTTAATTAATGGGAA
Found at i:34109366 original size:20 final size:20
Alignment explanation
Indices: 34109335--34109377 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
34109325 AAAGAAAAAC
34109335 TTTGTAAAAATGTAAAGATTA
1 TTTGTAAAAATGTAAAG-TTA
*
34109356 TTTGT-AAAATGTCAAGTTA
1 TTTGTAAAAATGTAAAGTTA
34109375 TTT
1 TTT
34109378 ATAGTGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (20 bp):
TTTGTAAAAATGTAAAGTTA
Found at i:34115563 original size:6 final size:6
Alignment explanation
Indices: 34115552--34115578 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
34115542 AGAAGAAAGT
34115552 AAGTGA AAGTGA AAGTGA AAGTGA AAG
1 AAGTGA AAGTGA AAGTGA AAGTGA AAG
34115579 CAAATAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.33, T:0.15
Consensus pattern (6 bp):
AAGTGA
Found at i:34123687 original size:25 final size:28
Alignment explanation
Indices: 34123642--34123696 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
34123632 TTAAGAACAC
*
34123642 ATATATATTATATAAAGAAAT-ATGTAT
1 ATATATACTATATAAAGAAATCATGTAT
34123669 ATATATACTATAT-AA-AAATGCATGTAT
1 ATATATACTATATAAAGAAAT-CATGTAT
34123696 A
1 A
34123697 AGTTTAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 4 0.16
26 2 0.08
27 19 0.76
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (28 bp):
ATATATACTATATAAAGAAATCATGTAT
Found at i:34124368 original size:13 final size:12
Alignment explanation
Indices: 34124350--34124388 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
34124340 TATTTCAGGT
34124350 AAAATAAAATGAA
1 AAAATAAAA-GAA
34124363 AAAATAAAAGAA
1 AAAATAAAAGAA
*
34124375 AATAAAAAAAGAA
1 AA-AATAAAAGAA
34124388 A
1 A
34124389 TATGTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 5 0.21
13 19 0.79
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.10
Consensus pattern (12 bp):
AAAATAAAAGAA
Found at i:34124384 original size:18 final size:18
Alignment explanation
Indices: 34124349--34124384 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
34124339 TTATTTCAGG
* *
34124349 TAAAATAAAATGAAAAAA
1 TAAAAGAAAATAAAAAAA
34124367 TAAAAGAAAATAAAAAAA
1 TAAAAGAAAATAAAAAAA
34124385 GAAATATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.14
Consensus pattern (18 bp):
TAAAAGAAAATAAAAAAA
Found at i:34125998 original size:30 final size:30
Alignment explanation
Indices: 34125963--34126026 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
34125953 GGCAAAAAAT
34125963 TCTCAAATTTCTCCCTAAATTTCTCAAAGC
1 TCTCAAATTTCTCCCTAAATTTCTCAAAGC
*
34125993 TCTCAAATTTCTCCTTAAATTTCTCAAAGC
1 TCTCAAATTTCTCCCTAAATTTCTCAAAGC
34126023 TCTC
1 TCTC
34126027 TTTAATTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.28, C:0.30, G:0.03, T:0.39
Consensus pattern (30 bp):
TCTCAAATTTCTCCCTAAATTTCTCAAAGC
Found at i:34127773 original size:18 final size:18
Alignment explanation
Indices: 34127750--34127792 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
34127740 TGCTAGATGC
*
34127750 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
34127768 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
34127786 GTTTCCT
1 GTATCCT
34127793 TTTCCCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:34128218 original size:24 final size:22
Alignment explanation
Indices: 34128191--34128246 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 22
34128181 TATTTAATAA
34128191 AATAAATATTGTTTTTA-ATATTTT
1 AATAAA-ATT-TTTTTATAT-TTTT
34128215 AATAGTAAATTTTTTTATATTTTT
1 AATA--AAATTTTTTTATATTTTT
34128239 AATAAAAT
1 AATAAAAT
34128247 AGAAGTTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
22 4 0.14
24 18 0.62
25 5 0.17
26 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (22 bp):
AATAAAATTTTTTTATATTTTT
Found at i:34131507 original size:125 final size:125
Alignment explanation
Indices: 34131237--34131880 Score: 875
Period size: 125 Copynumber: 5.1 Consensus size: 125
34131227 GGCCAAACAT
* * *
34131237 GAACTACTGCAGAAAAAGAGCGTCTACATAGGAGC-TTTTTCA-TCAATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGT-GGAGCTTTTTTCAGT-AATTTTGCTGACAGTGCAT
** * * * *
34131300 CCTATTTGAAGCGTTTTTGACACTATTTGTTTAGAAAAGTCTTCTCAAAATAATTTTTTCAG
64 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
* *
34131362 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTAATTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGT-GGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * *
34131427 CTGCTTGAAGC-TTTTGTGACACTATTTATTCAGAACCATCTTCTCAAAATTATTTTTT-AG
65 CTGCTTGAAGCGTTTT-TGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
* * * *
34131487 GAAATACTGTAGAAAAAGAGCATCCACATGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGT-GGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
**
34131552 CTGCTTGAAGCGTTTTTGACACTAACTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
* * *
34131613 GAACTACTGTAGAAAAAGAGCGTCCATGTGGAGCTTGTTTCAGTAATTTTGCTAACAGTGCATCC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
**
34131678 TGCTTGAAGCGTTTTTGACACTAACTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
* * *
34131738 GAACTACTGTAGAAAAAGAGCGTCCATGTGGAGCTTGTTTCAGTAATTTTGCTAACAGTGCATCC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * * *
34131803 TGCTTGAAGCGCTTTTCAAATTATTTGTTCAG-AACGGTATTCTCAAAATTATTTTTTTTAA
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAAC-GTCTTCTCAAAATTA-TTTTTTCAA
34131864 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
34131881 AAAAACAAAA
Statistics
Matches: 473, Mismatches: 39, Indels: 13
0.90 0.07 0.02
Matches are distributed among these distances:
124 3 0.01
125 344 0.73
126 125 0.26
127 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
Found at i:34132062 original size:34 final size:34
Alignment explanation
Indices: 34131943--34132072 Score: 104
Period size: 34 Copynumber: 3.9 Consensus size: 34
34131933 TAGAATGTTA
* *
34131943 TTTTAAAAAAAA-ACTAAACCCTTATTTAATTAA
1 TTTTAAAAAAAACACTAAACCCTGATTTAATTAT
*** * *
34131976 TTTTCTTAAAAACATTAAACTCTGATTTAATTTAT
1 TTTTAAAAAAAACACTAAACCCTGATTTAA-TTAT
* ** * *
34132011 TTATT--TAAAGCCCCTAAACCCTAATTTAATTAT
1 TT-TTAAAAAAAACACTAAACCCTGATTTAATTAT
*
34132044 TTTTAAAAAAAACACTAAATCCTGATTTA
1 TTTTAAAAAAAACACTAAACCCTGATTTA
34132073 TTTTTTAAAA
Statistics
Matches: 73, Mismatches: 19, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
32 2 0.03
33 15 0.21
34 49 0.67
35 5 0.07
36 2 0.03
ACGTcount: A:0.43, C:0.15, G:0.02, T:0.40
Consensus pattern (34 bp):
TTTTAAAAAAAACACTAAACCCTGATTTAATTAT
Found at i:34136210 original size:48 final size:49
Alignment explanation
Indices: 34136100--34136212 Score: 117
Period size: 48 Copynumber: 2.3 Consensus size: 49
34136090 ATCTGGGCTG
* * *
34136100 TATAACAGGAAGCTCATAAGAGCCATATTCAGGAAGCTCCGGATAGCCA
1 TATATCAGGAAGCTCATAAGAGCCATATTCAGGAAGCTCCGAAAAGCCA
* * *
34136149 TATATC-GGAAAGCTCA-AGCGAGCTATA-TCGGGAAGCTCCGAAAAGCCA
1 TATATCAGG-AAGCTCATA-AGAGCCATATTCAGGAAGCTCCGAAAAGCCA
34136197 T-TAATCAGGAAGCTCA
1 TAT-ATCAGGAAGCTCA
34136213 CAAATAGCCT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
47 1 0.02
48 32 0.59
49 21 0.39
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (49 bp):
TATATCAGGAAGCTCATAAGAGCCATATTCAGGAAGCTCCGAAAAGCCA
Found at i:34136226 original size:26 final size:26
Alignment explanation
Indices: 34136179--34136249 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
34136169 AGCTATATCG
34136179 GGAAGCTC-CGAAA-AGCCATTAATCA
1 GGAAGCTCAC-AAATAGCCATTAATCA
* **
34136204 GGAAGCTCACAAATAGCCTTTAATTG
1 GGAAGCTCACAAATAGCCATTAATCA
*
34136230 GGAAGCTCACTAATAGCCAT
1 GGAAGCTCACAAATAGCCAT
34136250 ATATCGAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
25 11 0.28
26 28 0.72
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.21
Consensus pattern (26 bp):
GGAAGCTCACAAATAGCCATTAATCA
Found at i:34136337 original size:24 final size:23
Alignment explanation
Indices: 34136310--34136392 Score: 67
Period size: 24 Copynumber: 3.4 Consensus size: 23
34136300 CACAACCGAT
*
34136310 CGGGATGCTCCGAAGAGCTATTAA
1 CGGGAAGCT-CGAAGAGCTATTAA
* * *
34136334 CGGGAAGCTCGCAGGAACCATATAA
1 CGGGAAGCTCG-AAGAGCTAT-TAA
* *
34136359 CGGGAAGCTCGAGAGGGCTAATAA
1 CGGGAAGCTCGA-AGAGCTATTAA
*
34136383 CGGGATGCTC
1 CGGGAAGCTC
34136393 TTTCGAGCTG
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
23 2 0.04
24 27 0.59
25 17 0.37
ACGTcount: A:0.30, C:0.22, G:0.33, T:0.16
Consensus pattern (23 bp):
CGGGAAGCTCGAAGAGCTATTAA
Found at i:34137274 original size:17 final size:16
Alignment explanation
Indices: 34137244--34137288 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
34137234 AAATGATGAT
*
34137244 ATTTTCTTTATTTTATC
1 ATTTTCATT-TTTTATC
*
34137261 ATTTATCATTTTTTATT
1 ATTT-TCATTTTTTATC
34137278 ATTTTCATTTT
1 ATTTTCATTTT
34137289 CCAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTCATTTTTTATC
Found at i:34139057 original size:13 final size:13
Alignment explanation
Indices: 34139039--34139064 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34139029 ATTTAAAATA
34139039 TAAATTAGATTTT
1 TAAATTAGATTTT
34139052 TAAATTAGATTTT
1 TAAATTAGATTTT
34139065 ACAAATAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TAAATTAGATTTT
Found at i:34139467 original size:12 final size:12
Alignment explanation
Indices: 34139446--34139484 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
34139436 TGACGTGGCA
*
34139446 GAGGAGGACGAT
1 GAGGACGACGAT
*
34139458 GAGGACGACGAA
1 GAGGACGACGAT
*
34139470 GAGGATGACGAT
1 GAGGACGACGAT
34139482 GAG
1 GAG
34139485 CTTTATGGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.36, C:0.10, G:0.46, T:0.08
Consensus pattern (12 bp):
GAGGACGACGAT
Found at i:34139605 original size:12 final size:12
Alignment explanation
Indices: 34139590--34139617 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
34139580 GGAAGAAGAT
34139590 GAGGGAGAGGGA
1 GAGGGAGAGGGA
34139602 GAGGGAGAGGGA
1 GAGGGAGAGGGA
34139614 GAGG
1 GAGG
34139618 ACGATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (12 bp):
GAGGGAGAGGGA
Found at i:34147833 original size:123 final size:126
Alignment explanation
Indices: 34147680--34147962 Score: 317
Period size: 126 Copynumber: 2.3 Consensus size: 126
34147670 TTTGTTTTTC
* * * * *
34147680 GTTGCACTTTCAATGTATACTAATGATGATTCCTTT-CTGTTTTTACGCAATTTGTT-ACATGTC
1 GTTGCACTTTTAATGTATACTAATGATGATTCCTTTCCGGTTCTTACACAATTTGTTCACATATC
* * * * *
34147743 GTTATTCATTT-CATATCTCGATTTTAATGTTC-ACATGTTCTTCATTGCATTAGAATTGTG
66 GTTATTCATTTGCATATCTCGAGTTTAATG-CCGACACGTTCTTCATTGCATTAGAATAGCG
* * *
34147803 GTTGCACTTTTGATGTATACTAGTGATGATT-CTTTCCGGTTCTTACACAATTTGTTGCATATAT
1 GTTGCACTTTTAATGTATACTAATGATGATTCCTTTCCGGTTCTTACACAATTTGTT-CACATAT
* * * * * **
34147867 GGTTATTCGTTTGTATATCTTGAGTTTAATGCCGATACGTTCTTCATTGCATTATCATAGCG
65 CGTTATTCATTTGCATATCTCGAGTTTAATGCCGACACGTTCTTCATTGCATTAGAATAGCG
*
34147929 ATTGCAC-TTTAATGTATACTAATGATGATTCCTT
1 GTTGCACTTTTAATGTATACTAATGATGATTCCTT
34147963 ATAGTTCTTA
Statistics
Matches: 131, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
122 4 0.03
123 45 0.34
125 36 0.27
126 46 0.35
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.46
Consensus pattern (126 bp):
GTTGCACTTTTAATGTATACTAATGATGATTCCTTTCCGGTTCTTACACAATTTGTTCACATATC
GTTATTCATTTGCATATCTCGAGTTTAATGCCGACACGTTCTTCATTGCATTAGAATAGCG
Found at i:34147979 original size:125 final size:123
Alignment explanation
Indices: 34147681--34148051 Score: 365
Period size: 125 Copynumber: 3.0 Consensus size: 123
34147671 TTGTTTTTCG
* * * *
34147681 TTGCACTTTCAATGTATACTAATGATGATTCCTTTCTGTTTTTACGCAATTTGTT--ACATGTCG
1 TTGCACTTT-AATGTATACTAATGATGATTCCTTT-AGTTCTTACACAATTTGTTGCATATGTCG
* * * * * * * *
34147744 TTATTCATTTCATATCTCGATTTTAATGTTC-ACATGTTCTTCATTGCATTAGAATTGTGG
64 TTATTCGTTTCATATCTTGAGTTTAATG-TCGATATGTTCTTCATTGCATTAGCATAGCGA
* * * * *
34147804 TTGCACTTTTGATGTATACTAGTGATGATT-CTTTCCGGTTCTTACACAATTTGTTGCATATATG
1 TTGCAC-TTTAATGTATACTAATGATGATTCCTTT--AGTTCTTACACAATTTGTTGCATATGTC
* * * *
34147868 GTTATTCGTTTGTATATCTTGAGTTTAATGCCGATACGTTCTTCATTGCATTATCATAGCGA
63 GTTATTCGTTT-CATATCTTGAGTTTAATGTCGATATGTTCTTCATTGCATTAGCATAGCGA
* **
34147930 TTGCACTTTAATGTATACTAATGATGATTCCTTATAGTTCTTACTCAATTT-TCTGCATATGTTA
1 TTGCACTTTAATGTATACTAATGATGATTCCTT-TAGTTCTTACACAATTTGT-TGCATATGTCG
* * * *
34147994 TTATTTGTTTACATATCTTGAGTTTAATGTTGATATGTTCTTCAATGCACTAGCATAG
64 TTATTCGTTT-CATATCTTGAGTTTAATGTCGATATGTTCTTCATTGCATTAGCATAG
34148052 GATAGCAGCG
Statistics
Matches: 203, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
122 4 0.02
123 41 0.20
124 4 0.02
125 107 0.53
126 46 0.23
127 1 0.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (123 bp):
TTGCACTTTAATGTATACTAATGATGATTCCTTTAGTTCTTACACAATTTGTTGCATATGTCGTT
ATTCGTTTCATATCTTGAGTTTAATGTCGATATGTTCTTCATTGCATTAGCATAGCGA
Found at i:34151782 original size:28 final size:27
Alignment explanation
Indices: 34151749--34151855 Score: 67
Period size: 28 Copynumber: 3.9 Consensus size: 27
34151739 TATTAATATG
34151749 AATAATAAATAATTTAATCATATTTTA
1 AATAATAAATAATTTAATCATATTTTA
* * *
34151776 ACATAAT-TATTATTAAAT-ATATTTTA
1 A-ATAATAAATAATTTAATCATATTTTA
* * * *
34151802 ATTAAAATATATAATTTAATAAAATTCTT-
1 A--ATAATAAATAATTTAATCATATT-TTA
* *
34151831 AATAATCAATATTTTTAATCATATT
1 AATAATAAATA-ATTTAATCATATT
34151856 CAACATATTT
Statistics
Matches: 60, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
26 9 0.15
27 20 0.33
28 24 0.40
29 5 0.08
30 2 0.03
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (27 bp):
AATAATAAATAATTTAATCATATTTTA
Found at i:34151813 original size:18 final size:17
Alignment explanation
Indices: 34151792--34151826 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
34151782 TTATTATTAA
*
34151792 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
34151810 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
34151827 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:34154406 original size:45 final size:45
Alignment explanation
Indices: 34154345--34154433 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
34154335 ATGAAAAAAT
*
34154345 TATAAAATATACATAAAATCAACACTAGCACTAACAACATGTTTA
1 TATAAAATATACATAAAATCAACACTAACACTAACAACATGTTTA
*
34154390 TATAAAATATACATAAAATCAACACTAACGCTAACAACATGTTT
1 TATAAAATATACATAAAATCAACACTAACACTAACAACATGTTT
34154434 GGTTGAGGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (45 bp):
TATAAAATATACATAAAATCAACACTAACACTAACAACATGTTTA
Found at i:34157314 original size:13 final size:13
Alignment explanation
Indices: 34157296--34157320 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34157286 GTTTTCATCC
34157296 AAAATTCTTTAAT
1 AAAATTCTTTAAT
34157309 AAAATTCTTTAA
1 AAAATTCTTTAA
34157321 ACATCCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAATTCTTTAAT
Found at i:34158613 original size:27 final size:28
Alignment explanation
Indices: 34158557--34158627 Score: 67
Period size: 29 Copynumber: 2.6 Consensus size: 28
34158547 AATACATCAA
*
34158557 AAAATTCAAAAA-ATCAT-AAATTATAAT
1 AAAATTCAAAAATA-AATGAAATTATAAT
* **
34158584 -AAATTCTAAAATAAATGAAATTATTTT
1 AAAATTCAAAAATAAATGAAATTATAAT
34158611 AAAAATTCAAAAATAAA
1 -AAAATTCAAAAATAAA
34158628 AAATTGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
26 12 0.34
27 9 0.26
29 14 0.40
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (28 bp):
AAAATTCAAAAATAAATGAAATTATAAT
Found at i:34175951 original size:19 final size:18
Alignment explanation
Indices: 34175902--34175963 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
34175892 AAATTAGAAA
34175902 AAAAATCGTAAAAAATAT
1 AAAAATCGTAAAAAATAT
* * **
34175920 AAAAATTGGAAAATTTTAT
1 AAAAATCGTAAAA-AATAT
*
34175939 AAAAATCGTAAAAAAAAT
1 AAAAATCGTAAAAAATAT
34175957 ATAAAAT
1 A-AAAAT
34175964 ATATAGAAAT
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
18 14 0.42
19 19 0.58
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.26
Consensus pattern (18 bp):
AAAAATCGTAAAAAATAT
Found at i:34175997 original size:27 final size:28
Alignment explanation
Indices: 34175947--34175999 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
34175937 ATAAAAATCG
34175947 TAAAAAAAATATAAAATATATAGAAATA
1 TAAAAAAAATATAAAATATATAGAAATA
* * *
34175975 TAAAAAAATTATGAAAT-TTTAGAAA
1 TAAAAAAAATATAAAATATATAGAAA
34176000 GCCGTAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (28 bp):
TAAAAAAAATATAAAATATATAGAAATA
Found at i:34176445 original size:90 final size:87
Alignment explanation
Indices: 34176170--34176456 Score: 299
Period size: 89 Copynumber: 3.2 Consensus size: 87
34176160 TAATAAGAGC
* *
34176170 AGGGGCTTAATTGCTTTTTTAAAAAATTTTGAGGGTCTTTTTTATGCATTTTGAAAGTTCAAGTA
1 AGGGGCTTAATTGCTTTTTTAAAAAGTTTT-AGGGTCTTTTTTATGCATTTTGAAAGTTCAAATA
34176235 CTCAATTAAGTGAAAAAAAAAT-
65 CTCAATTAAGTGAAAAAAAAATG
*** * * * * *
34176257 AGGGGCTTAATTGCTTTTTTTTTTTTAAGTTTGAGAGCCTTTTTGATGCATTTTGAATGTTCAAA
1 AGGGGCTTAATTGC---TTTTTTAAAAAGTTTTAGGGTCTTTTTTATGCATTTTGAAAGTTCAAA
* *
34176322 TACCCAGTTAAGTGAAAAAAAAA-G
63 TACTCAATTAAGTGAAAAAAAAATG
* * * *
34176346 TAGGGGCTTAATTGCTTTTCTTGAAAAAGTTTTAGGGTTTTTTTTATGTATTTTAAAAGTTCAAT
1 -AGGGGCTTAATTGCTTTT-TT-AAAAAGTTTTAGGGTCTTTTTTATGCATTTTGAAAGTTCAAA
* *
34176411 TGCTCAATTATGTGCAAAAAAAAATG
63 TACTCAATTAAGTG-AAAAAAAAATG
** *
34176437 AGAAGCTTAATTGTTTTTTT
1 AGGGGCTTAATTGCTTTTTT
34176457 TCTTTTTTTA
Statistics
Matches: 160, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
87 18 0.11
88 2 0.01
89 90 0.56
90 49 0.31
91 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (87 bp):
AGGGGCTTAATTGCTTTTTTAAAAAGTTTTAGGGTCTTTTTTATGCATTTTGAAAGTTCAAATAC
TCAATTAAGTGAAAAAAAAATG
Found at i:34176680 original size:29 final size:30
Alignment explanation
Indices: 34176624--34176679 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
34176614 ACTGTATTAA
34176624 ATACCTATTTTCATAATTAATCTATTTTCC
1 ATACCTATTTTCATAATTAATCTATTTTCC
34176654 ATACC-ATTTTCATAATTAAT-TATTTT
1 ATACCTATTTTCATAATTAATCTATTTT
34176680 TATATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 6 0.23
29 15 0.58
30 5 0.19
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (30 bp):
ATACCTATTTTCATAATTAATCTATTTTCC
Found at i:34179075 original size:16 final size:16
Alignment explanation
Indices: 34179054--34179128 Score: 82
Period size: 16 Copynumber: 4.8 Consensus size: 16
34179044 TATTTTATAT
34179054 ATTTTTATAAATTTTA
1 ATTTTTATAAATTTTA
34179070 ATTTTT-TAAATTTTA
1 ATTTTTATAAATTTTA
* *
34179085 AGTTTTTTTTAATTTTA
1 A-TTTTTATAAATTTTA
* **
34179102 ATTTATATATTTTTTA
1 ATTTTTATAAATTTTA
34179118 ATTTTTA-AAAT
1 ATTTTTATAAAT
34179129 CATGATCAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
15 12 0.25
16 27 0.56
17 9 0.19
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (16 bp):
ATTTTTATAAATTTTA
Found at i:34179123 original size:32 final size:31
Alignment explanation
Indices: 34179044--34179128 Score: 82
Period size: 32 Copynumber: 2.7 Consensus size: 31
34179034 AATTTTTGAG
* *
34179044 TATTTTATATATTTTTATAAATTTTAATTTTT
1 TATTTTTTA-ATTTTTATAAATTTTAATTTTA
** * *
34179076 TAAATTTTAAGTTTTTTTTAATTTTAATTTATA
1 TATTTTTTAA-TTTTTATAAATTTTAATTT-TA
34179109 TATTTTTTAATTTTTA-AAAT
1 TATTTTTTAATTTTTATAAAT
34179129 CATGATCAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
31 4 0.10
32 28 0.68
33 9 0.22
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (31 bp):
TATTTTTTAATTTTTATAAATTTTAATTTTA
Found at i:34179330 original size:31 final size:30
Alignment explanation
Indices: 34179283--34179357 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 30
34179273 TTTTAACGAT
* *
34179283 AGAGTGGCT-AAATTGACAACTTATCTAATG
1 AGAGTGACTAAAATTGACAACTTATCTAA-C
34179313 AGAGTGACTAAAATTGACAACTTATCTAAC
1 AGAGTGACTAAAATTGACAACTTATCTAAC
34179343 ATGAGTGACTAAAAT
1 A-GAGTGACTAAAAT
34179358 AATAAATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 9 0.22
31 32 0.78
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (30 bp):
AGAGTGACTAAAATTGACAACTTATCTAAC
Found at i:34183368 original size:22 final size:22
Alignment explanation
Indices: 34183326--34183368 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
34183316 ACAACTGAAG
**
34183326 AAAATAATAAATTGTGGATATT
1 AAAATAATAAATTGTAAATATT
34183348 AAAATAA-AAATGTGTAAATAT
1 AAAATAATAAAT-TGTAAATAT
34183369 ATCAAAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.33
Consensus pattern (22 bp):
AAAATAATAAATTGTAAATATT
Found at i:34184220 original size:16 final size:16
Alignment explanation
Indices: 34184199--34184229 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34184189 TTGTGTATGG
*
34184199 TTTTAATATTAAATAT
1 TTTTAAGATTAAATAT
34184215 TTTTAAGATTAAATA
1 TTTTAAGATTAAATA
34184230 ACATTAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAAGATTAAATAT
Found at i:34208268 original size:21 final size:22
Alignment explanation
Indices: 34208244--34208289 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
34208234 CATTTTTAAT
34208244 ATTTT-TAATTTTTAAAAATAG
1 ATTTTATAATTTTTAAAAATAG
34208265 ATTTTATAATTTTTAAAAATAG
1 ATTTTATAATTTTTAAAAATAG
34208287 ATT
1 ATT
34208290 AAATATTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
ATTTTATAATTTTTAAAAATAG
Found at i:34210664 original size:16 final size:16
Alignment explanation
Indices: 34210643--34210673 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34210633 TAATTATTTT
34210643 TAAAAAATATATATTC
1 TAAAAAATATATATTC
*
34210659 TAAAAATTATATATT
1 TAAAAAATATATATT
34210674 TGCTTATGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAAAAATATATATTC
Found at i:34213367 original size:63 final size:63
Alignment explanation
Indices: 34213216--34213407 Score: 206
Period size: 63 Copynumber: 3.0 Consensus size: 63
34213206 TGGTCCACAT
* *
34213216 GGCTTGGACACACGCTCATGTCTCT-GACCCGTGTGACTCAAATTCCAAACCAGTGAGTTACAC
1 GGCTTGGACACACGCCCATGTCTCTAG-CCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
* * * * * * * **
34213279 AGCCTGGACACACGTCCGTGCCTCTAGCTCGTTTGACTCAAATTTTAAAACAGTGAGTTACAC
1 GGCTTGGACACACGCCCATGTCTCTAGCCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
* * * * * **
34213342 GGCTTGGACACACACCCATATCTCTAGCCCGTGTGAATCTAATTCCAAAATAGTTTGTTACAC
1 GGCTTGGACACACGCCCATGTCTCTAGCCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
34213405 GGC
1 GGC
34213408 CTGCCACACG
Statistics
Matches: 101, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
63 100 0.99
64 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (63 bp):
GGCTTGGACACACGCCCATGTCTCTAGCCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
Found at i:34214456 original size:29 final size:30
Alignment explanation
Indices: 34214414--34214472 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
34214404 TACGATTTAA
*
34214414 TGTGAAATTGTATACAT-AAACTTTGATTT
1 TGTGAAATTGTATACATGAAAATTTGATTT
* * *
34214443 TGTGCAATTTTATATATGAAAATTTGATTT
1 TGTGAAATTGTATACATGAAAATTTGATTT
34214473 GATCCAATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (30 bp):
TGTGAAATTGTATACATGAAAATTTGATTT
Found at i:34215794 original size:19 final size:19
Alignment explanation
Indices: 34215745--34215797 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
34215735 GGGTTTAAGA
* *
34215745 TTTTTAAAATTTTAT-ATT
1 TTTTTAAAATTTAATAATG
* **
34215763 TTTTTTATTTTTAATAATG
1 TTTTTAAAATTTAATAATG
34215782 TTTTTAAAATTTAATA
1 TTTTTAAAATTTAATA
34215798 GTATTTATAA
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTAAAATTTAATAATG
Found at i:34218179 original size:46 final size:46
Alignment explanation
Indices: 34218107--34218475 Score: 594
Period size: 46 Copynumber: 8.0 Consensus size: 46
34218097 ATAATGCTAT
* * * * *
34218107 AACTTAGTATGATTTTCTTTACTGAAACACCATATCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
*
34218153 AACTCAGTATGGTTTTCTTCATTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
*
34218199 AACTCAGTATGGTTTTCCTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
* *
34218245 AACTCAGTATGGTTTTCTTTACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
* * *
34218291 AACTCAGTATGGTTTTGTTCATTGAAATATCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
* * *
34218337 AACTCAGTATGATTTTCTTCATTGAAATACTATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
*
34218383 AACTCAGTATGGTTTTCTTCATTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
34218429 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
34218475 A
1 A
34218476 CTTTGCCATG
Statistics
Matches: 300, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 300 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
Found at i:34222588 original size:13 final size:13
Alignment explanation
Indices: 34222570--34222607 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
34222560 CTAAATCATA
34222570 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
*
34222583 ATTTTAGTAAAAC
1 ATTTTAGTAAAAT
34222596 ATTTT-GTAAAAT
1 ATTTTAGTAAAAT
34222608 CAAGAGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:34226877 original size:17 final size:20
Alignment explanation
Indices: 34226835--34226872 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
34226825 TTTTCATTAC
*
34226835 GATATTTGATTTTTTTTCCA
1 GATATTTGATTTTTTCTCCA
34226855 GATATTTG-TTTTTTCTCC
1 GATATTTGATTTTTTCTCC
34226873 GTATTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.16, C:0.13, G:0.11, T:0.61
Consensus pattern (20 bp):
GATATTTGATTTTTTCTCCA
Found at i:34239817 original size:42 final size:42
Alignment explanation
Indices: 34239728--34239873 Score: 188
Period size: 42 Copynumber: 3.5 Consensus size: 42
34239718 TGATTCAGTA
* * *
34239728 CACCGGCACTT-AGCATGCTAGACATATAGTCTGA-AATGTTT
1 CACCGGCA-TTAAGCCTGCTAGACATAAAGTCTGATATTGTTT
* **
34239769 CACCGGCATTAAGCCTACTAGATGTAAAGTCTGATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACATAAAGTCTGATATTGTTT
34239811 CACCGGCATTAAGCCTGCTAGACATAAAGTCTGATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACATAAAGTCTGATATTGTTT
** *
34239853 CACTAGCAATAAGCCTGCTAG
1 CACCGGCATTAAGCCTGCTAG
34239874 GCGCTAAGCC
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
40 2 0.02
41 26 0.29
42 63 0.69
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (42 bp):
CACCGGCATTAAGCCTGCTAGACATAAAGTCTGATATTGTTT
Found at i:34243636 original size:19 final size:19
Alignment explanation
Indices: 34243612--34243724 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
34243602 AATTTTTGAG
34243612 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
34243631 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
34243650 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
34243671 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
**
34243690 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34243709 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
34243725 ATATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:34243657 original size:40 final size:40
Alignment explanation
Indices: 34243613--34243719 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
34243603 ATTTTTGAGG
34243613 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
***
34243653 ATATGCAATCTTAGATATGATATGCAATATTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
34243693 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
34243720 TTAGAATATA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 22 0.35
40 41 0.65
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
Found at i:34243679 original size:59 final size:56
Alignment explanation
Indices: 34243612--34243731 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 56
34243602 AATTTTTGAG
* *
34243612 GATATGCAATCTTAGATATGATATGCAATCCAAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATATTAGATATGATATACAATCCAAGATATG--ATATGCAATCTTAGA-AT
* **
34243671 GATATGCAATATTAGATATGATATATAATCTTAGATATGATATGCAATCTTAGAAT
1 GATATGCAATATTAGATATGATATACAATCCAAGATATGATATGCAATCTTAGAAT
34243727 -ATATG
1 GATATG
34243732 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
55 5 0.09
56 2 0.04
57 15 0.27
59 34 0.61
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (56 bp):
GATATGCAATATTAGATATGATATACAATCCAAGATATGATATGCAATCTTAGAAT
Found at i:34244827 original size:94 final size:97
Alignment explanation
Indices: 34244568--34244856 Score: 512
Period size: 98 Copynumber: 3.0 Consensus size: 97
34244558 AAAAATCGTA
34244568 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
34244633 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAGTGGATGTTC-TTTAAAGTG
34244666 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* **
34244731 AAATCTTGGATAAGCGGATGTTC-TTGGA-T-
66 AAATCTTGGATAAGTGGATGTTCTTTAAAGTG
34244760 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
34244825 AAATCTTGGATAAGTGGATGTTCCTTTAAAGT
66 AAATCTTGGATAAGTGGATGTT-CTTTAAAGT
34244857 TTTATTGTAC
Statistics
Matches: 182, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
94 86 0.47
95 2 0.01
96 6 0.03
97 1 0.01
98 87 0.48
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (97 bp):
AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTAAAGTG
Found at i:34250781 original size:3 final size:3
Alignment explanation
Indices: 34250773--34250799 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
34250763 AATGCTATGT
34250773 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
34250800 AAAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:34252559 original size:14 final size:15
Alignment explanation
Indices: 34252540--34252568 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
34252530 ATATTTGGTG
34252540 AAATTATT-TTTAAA
1 AAATTATTATTTAAA
34252554 AAATTATTATTTAAA
1 AAATTATTATTTAAA
34252569 TATTACCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATTATTATTTAAA
Found at i:34256925 original size:19 final size:19
Alignment explanation
Indices: 34256896--34256961 Score: 75
Period size: 19 Copynumber: 3.5 Consensus size: 19
34256886 CCAAATTTTT
34256896 TTTTAAAAAATAAAAAAGTA
1 TTTT-AAAAATAAAAAAGTA
34256916 TTTTAAAAATAAAAAA--A
1 TTTTAAAAATAAAAAAGTA
**
34256933 -TAAAAAAATAAAAAAAGTA
1 TTTTAAAAAT-AAAAAAGTA
34256952 TTTTAAAAAT
1 TTTTAAAAAT
34256962 TTTAAAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 7 0.18
17 7 0.18
19 13 0.34
20 11 0.29
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (19 bp):
TTTTAAAAATAAAAAAGTA
Found at i:34256931 original size:8 final size:8
Alignment explanation
Indices: 34256920--34256948 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
34256910 AAAGTATTTT
34256920 AAAAATAA
1 AAAAATAA
34256928 AAAAATAA
1 AAAAATAA
34256936 AAAAATAA
1 AAAAATAA
34256944 AAAAA
1 AAAAA
34256949 GTATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAATAA
Found at i:34256944 original size:35 final size:37
Alignment explanation
Indices: 34256900--34256975 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 37
34256890 ATTTTTTTTT
34256900 AAAAAAT-AAAAAAGTATTTTAAAAA-TAAAAAAATA
1 AAAAAATAAAAAAAGTATTTTAAAAATTAAAAAAATA
**
34256935 AAAAAATAAAAAAAGTATTTTAAAAATTTTAAAAATA
1 AAAAAATAAAAAAAGTATTTTAAAAATTAAAAAAATA
34256972 AAAA
1 AAAA
34256976 TAAAAATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 7 0.19
36 18 0.49
37 12 0.32
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (37 bp):
AAAAAATAAAAAAAGTATTTTAAAAATTAAAAAAATA
Found at i:34259572 original size:18 final size:17
Alignment explanation
Indices: 34259519--34259882 Score: 239
Period size: 17 Copynumber: 20.7 Consensus size: 17
34259509 CAAAAAAAAA
*
34259519 TTTGAAACACGAGAATTT
1 TTTGAAACACGA-AAATT
* * *
34259537 TTTAAAACATGAAGATT
1 TTTGAAACACGAAAATT
*
34259554 TTTGGAACACGCAAAA-T
1 TTTGAAACACG-AAAATT
*
34259571 TTTGAAAACATGAAAATT
1 TTTG-AAACACGAAAATT
*
34259589 TTTGAAATACGAAAATT
1 TTTGAAACACGAAAATT
*
34259606 TTAGAAACACGAAAATT
1 TTTGAAACACGAAAATT
* *
34259623 TTTAAAACACGACAA-T
1 TTTGAAACACGAAAATT
**
34259639 TTTGAAACACGGTCAATT
1 TTTGAAACAC-GAAAATT
* *
34259657 TTTGAAAATACGACAATT
1 TTTG-AAACACGAAAATT
* * *
34259675 TTTGAAATATGAGAATTTT
1 TTTGAAACACGA-AA-ATT
* * *
34259694 TTTAAAACATGGAAATTTT
1 TTTGAAACA-CGAAA-ATT
*
34259713 TTTGAAAACAAGAAAATT
1 TTTG-AAACACGAAAATT
** * * *
34259731 TTCAAAATATGAGAATT
1 TTTGAAACACGAAAATT
*
34259748 TTTGAAAACACGGGAAATTTT
1 TTTG-AAACAC--GAAA-ATT
*
34259769 TTTAAAAACACGAAAATT
1 TTT-GAAACACGAAAATT
* *
34259787 TTTGAAACACTAGAATT
1 TTTGAAACACGAAAATT
* *
34259804 TTTAAAACACGAAGATT
1 TTTGAAACACGAAAATT
34259821 TTTGAAACACGAAAATT
1 TTTGAAACACGAAAATT
* **
34259838 TTAGAAACGTGAAAATT
1 TTTGAAACACGAAAATT
* *
34259855 TTTAAAACACGACAA-T
1 TTTGAAACACGAAAATT
34259871 TTTGAAACACGA
1 TTTGAAACACGA
34259883 TTTTTTTAAA
Statistics
Matches: 270, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
16 22 0.08
17 144 0.53
18 52 0.19
19 31 0.11
20 10 0.04
21 11 0.04
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (17 bp):
TTTGAAACACGAAAATT
Done.