Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 92 of 135
Found at i:34669753 original size:45 final size:45
Alignment explanation
Indices: 34669685--34669830 Score: 193
Period size: 45 Copynumber: 3.2 Consensus size: 45
34669675 ATGTGCCGAC
* *
34669685 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAGTACTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
* * *
34669730 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGCCGAATACTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
* * * * * *
34669775 TACCGTTACTGTTACAGGTTCAGTACTTTGTGTGTTGAATATTGT
1 TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
34669820 TACTGTTACTG
1 TACTGTTACTG
34669831 CTACTGTTAC
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 87 1.00
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCGGCACTTTGTGTGTCGAATACTGT
Found at i:34669849 original size:7 final size:6
Alignment explanation
Indices: 34669817--34669856 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
34669807 TGTTGAATAT
*
34669817 TGTTAC TGTTAC TGCTAC TGTTAC TGATTAC TGTTTAC TG
1 TGTTAC TGTTAC TGTTAC TGTTAC TG-TTAC TG-TTAC TG
34669857 GTGTGTTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
6 18 0.60
7 12 0.40
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.47
Consensus pattern (6 bp):
TGTTAC
Found at i:34675786 original size:24 final size:24
Alignment explanation
Indices: 34675739--34675788 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
34675729 CACTAAAAAT
* *
34675739 ATTAAAATAAATGTTTTCCATTAA
1 ATTAAAATAAATATTTTACATTAA
34675763 ATTAAAATAAATATTTATAC-TTAA
1 ATTAAAATAAATATTT-TACATTAA
34675787 AT
1 AT
34675789 AACACTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (24 bp):
ATTAAAATAAATATTTTACATTAA
Found at i:34683185 original size:4 final size:4
Alignment explanation
Indices: 34683161--34683223 Score: 81
Period size: 4 Copynumber: 15.8 Consensus size: 4
34683151 AGGTGCTCGT
* * *
34683161 ATAC ATGC AAAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
34683209 ACAC ATAC ATGC ATA
1 ATAC ATAC ATAC ATA
34683224 AAAAGCATGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.48, C:0.25, G:0.05, T:0.22
Consensus pattern (4 bp):
ATAC
Found at i:34687210 original size:23 final size:23
Alignment explanation
Indices: 34687184--34687259 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
34687174 ATAAGTGCAA
34687184 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
34687207 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
34687230 CACTGTTATATAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
34687253 CACTGAT
1 CACTGAT
34687260 CAATAACACT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:34688378 original size:2 final size:2
Alignment explanation
Indices: 34688367--34688404 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
34688357 ATATAGTTTG
*
34688367 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34688405 TGAGTTGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:34704240 original size:1 final size:1
Alignment explanation
Indices: 34704236--34704294 Score: 82
Period size: 1 Copynumber: 59.0 Consensus size: 1
34704226 GAATTTAGAG
* ***
34704236 AAAAAGAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
34704295 CTTCTTGTGA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.93, C:0.00, G:0.02, T:0.05
Consensus pattern (1 bp):
A
Found at i:34704263 original size:32 final size:32
Alignment explanation
Indices: 34704227--34704292 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
34704217 AAAAAGAGAG
* * *
34704227 AATTTAGAGAAAAAGAAAAAAAAAAAAAAAAA
1 AATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
34704259 AATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
34704291 AA
1 AA
34704293 AACTTCTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.09
Consensus pattern (32 bp):
AATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Found at i:34708842 original size:30 final size:30
Alignment explanation
Indices: 34708808--34708898 Score: 146
Period size: 30 Copynumber: 3.0 Consensus size: 30
34708798 TTCCTTATCT
34708808 TGAACTTCGACGCTATTCGTTTCCTTGCCA
1 TGAACTTCGACGCTATTCGTTTCCTTGCCA
34708838 TGAACTTCGACGCTATTCGTTTCCTTGCCA
1 TGAACTTCGACGCTATTCGTTTCCTTGCCA
* * * *
34708868 TGAACTTCAACACTGTTTGTTTCCTTGCCA
1 TGAACTTCGACGCTATTCGTTTCCTTGCCA
34708898 T
1 T
34708899 TTGTTTCCTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.18, C:0.29, G:0.15, T:0.38
Consensus pattern (30 bp):
TGAACTTCGACGCTATTCGTTTCCTTGCCA
Found at i:34718896 original size:291 final size:292
Alignment explanation
Indices: 34718372--34718954 Score: 1159
Period size: 291 Copynumber: 2.0 Consensus size: 292
34718362 CAAATCATAA
34718372 AATAAATGAAAATATAAAAGAGATATAACTATAAAGTTTTAAACTGCGAATTAAATGGAAAAGCA
1 AATAAATGAAAATATAAAAGAGATATAACTATAAAGTTTTAAACTGCGAATTAAATGGAAAAGCA
34718437 AATCTCTTCCTTTCTAAATCTATACAGGCTTTTTGTTTTTGGTATACATACACGTGATATACCCA
66 AATCTCTTCCTTTCTAAATCTATACAGGCTTTTTGTTTTTGGTATACATACACGTGATATACCCA
34718502 AAGTTTGGTTTAAGTCATACCGGACCCACAATTTTACTCCATTAATATTTTTATTTAAACAAACG
131 AAGTTTGGTTTAAGTCATACCGGACCCACAATTTTACTCCATTAATATTTTTATTTAAACAAACG
34718567 CCGAAAATACATAAATAAACCCTACGTTATGCAAATCTAAATACATTACTTTATATATATATATA
196 CCGAAAATACATAAATAAACCCTACGTTATGCAAATCTAAATACATTACTTTATATATATATATA
34718632 ATTAAATTATTAGTTTATCTA-ATTTTAGTTT
261 ATTAAATTATTAGTTTATCTATATTTTAGTTT
34718663 AATAAATGAAAATATAAAAGAGATATAACTATAAAGTTTTAAACTGCGAATTAAATGGAAAAGCA
1 AATAAATGAAAATATAAAAGAGATATAACTATAAAGTTTTAAACTGCGAATTAAATGGAAAAGCA
34718728 AATCTCTTCCTTTCTAAATCTATACAGGCTTTTTGTTTTTGGTATACATACACGTGATATACCCA
66 AATCTCTTCCTTTCTAAATCTATACAGGCTTTTTGTTTTTGGTATACATACACGTGATATACCCA
34718793 AAGTTTGGTTTAAGTCATACCGGACCCACAATTTTACTCCATTAATATTTTTATTTAAACAAACG
131 AAGTTTGGTTTAAGTCATACCGGACCCACAATTTTACTCCATTAATATTTTTATTTAAACAAACG
34718858 CCGAAAATACATAAATAAACCCTACGTTATGCAAATCTAAATACATTACTTTATATATATATATA
196 CCGAAAATACATAAATAAACCCTACGTTATGCAAATCTAAATACATTACTTTATATATATATATA
34718923 ATTAAATTATTAGTTTATCTATATTTTAGTTT
261 ATTAAATTATTAGTTTATCTATATTTTAGTTT
34718955 TTCAACTTTG
Statistics
Matches: 291, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
291 281 0.97
292 10 0.03
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (292 bp):
AATAAATGAAAATATAAAAGAGATATAACTATAAAGTTTTAAACTGCGAATTAAATGGAAAAGCA
AATCTCTTCCTTTCTAAATCTATACAGGCTTTTTGTTTTTGGTATACATACACGTGATATACCCA
AAGTTTGGTTTAAGTCATACCGGACCCACAATTTTACTCCATTAATATTTTTATTTAAACAAACG
CCGAAAATACATAAATAAACCCTACGTTATGCAAATCTAAATACATTACTTTATATATATATATA
ATTAAATTATTAGTTTATCTATATTTTAGTTT
Found at i:34724218 original size:11 final size:10
Alignment explanation
Indices: 34724193--34724227 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
34724183 ATTATTTTAA
34724193 TTTTTAGAAT
1 TTTTTAGAAT
34724203 TTTTTAGAAT
1 TTTTTAGAAT
34724213 TCTTTTAGAAT
1 T-TTTTAGAAT
34724224 TTTT
1 TTTT
34724228 ATAATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.63
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:34724240 original size:21 final size:21
Alignment explanation
Indices: 34724194--34724240 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
34724184 TTATTTTAAT
**
34724194 TTTTAGAATTTTTTAGAATTC
1 TTTTAGAATTTTTTAGAATAA
*
34724215 TTTTAGAA-TTTTTATAATAA
1 TTTTAGAATTTTTTAGAATAA
34724235 TATTTA
1 T-TTTA
34724241 ATTTTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (21 bp):
TTTTAGAATTTTTTAGAATAA
Found at i:34724263 original size:18 final size:18
Alignment explanation
Indices: 34724222--34724263 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
34724212 TTCTTTTAGA
*
34724222 ATTTTTATAATAATATTT
1 ATTTTTATAAAAATATTT
*
34724240 AATTTTA-AAAAATATTTT
1 ATTTTTATAAAAATA-TTT
34724258 ATTTTT
1 ATTTTT
34724264 TGTAATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTTATAAAAATATTT
Found at i:34736139 original size:17 final size:18
Alignment explanation
Indices: 34736096--34736142 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
34736086 CCTCATATTA
34736096 TCACAATTTACAAAAAAT
1 TCACAATTTACAAAAAAT
* *
34736114 TATACCAATTT-CAAAATAT
1 T-CA-CAATTTACAAAAAAT
34736133 TCACAATTTA
1 TCACAATTTA
34736143 ATCCCTAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
17 6 0.26
18 2 0.09
19 9 0.39
20 6 0.26
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (18 bp):
TCACAATTTACAAAAAAT
Found at i:34741278 original size:63 final size:63
Alignment explanation
Indices: 34741199--34741327 Score: 222
Period size: 63 Copynumber: 2.0 Consensus size: 63
34741189 AATCTTGATT
* *
34741199 TATAACTTCAATTTGGTAATTCAAACTATATTAAGATGCACCTCATTCTTGATGTGATAAGAA
1 TATAACTTAAATTTGGTAATTCAAACTATATTAAGATGCACCTCATTCCTGATGTGATAAGAA
* *
34741262 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
1 TATAACTTAAATTTGGTAATTCAAACTATATTAAGATGCACCTCATTCCTGATGTGATAAGAA
34741325 TAT
1 TAT
34741328 CTCCATGTGA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (63 bp):
TATAACTTAAATTTGGTAATTCAAACTATATTAAGATGCACCTCATTCCTGATGTGATAAGAA
Found at i:34741711 original size:12 final size:12
Alignment explanation
Indices: 34741694--34741718 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34741684 TGTTTTTGTG
34741694 TGTGTATATATA
1 TGTGTATATATA
34741706 TGTGTATATATA
1 TGTGTATATATA
34741718 T
1 T
34741719 CTAAAGGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TGTGTATATATA
Found at i:34744798 original size:31 final size:31
Alignment explanation
Indices: 34744759--34744853 Score: 86
Period size: 31 Copynumber: 3.1 Consensus size: 31
34744749 TATGTGTTTG
34744759 AGGATTAAATTGATAGAATTTATAAATATGA
1 AGGATTAAATTGATAGAATTTATAAATATGA
* * * * *
34744790 AGGGTTAAATTTATTGAATTATTTAAA-ATTA
1 AGGATTAAATTGATAGAATT-TATAAATATGA
* * *
34744821 A-GATCAAATTGATAGAATGTATAAGTATTGA
1 AGGATTAAATTGATAGAATTTATAAATA-TGA
34744852 AG
1 AG
34744854 ACTCAATGTG
Statistics
Matches: 47, Mismatches: 13, Indels: 7
0.70 0.19 0.10
Matches are distributed among these distances:
29 4 0.09
30 14 0.30
31 24 0.51
32 5 0.11
ACGTcount: A:0.45, C:0.01, G:0.17, T:0.37
Consensus pattern (31 bp):
AGGATTAAATTGATAGAATTTATAAATATGA
Found at i:34751820 original size:24 final size:24
Alignment explanation
Indices: 34751788--34751836 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
34751778 TTTTGATAAA
34751788 TATCTTACACAAATGTGTATCTGC
1 TATCTTACACAAATGTGTATCTGC
*
34751812 TATCTTACACAAATGTGTATTTGC
1 TATCTTACACAAATGTGTATCTGC
34751836 T
1 T
34751837 TCGGTGGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (24 bp):
TATCTTACACAAATGTGTATCTGC
Found at i:34764248 original size:20 final size:19
Alignment explanation
Indices: 34764222--34764276 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
34764212 AATATATATA
*
34764222 CTTTAATTAATTCATTAAT
1 CTTTAATTAATTAATTAAT
34764241 CATTTAATTAATCTAATTAAT
1 C-TTTAATTAAT-TAATTAAT
34764262 CTTTAATTAATTAAT
1 CTTTAATTAATTAAT
34764277 CTTAATCTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 5 0.15
20 20 0.61
21 8 0.24
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (19 bp):
CTTTAATTAATTAATTAAT
Found at i:34764252 original size:24 final size:22
Alignment explanation
Indices: 34764224--34764284 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 22
34764214 TATATATACT
34764224 TTAATTAATTCATTAATCATTTAA
1 TTAATTAA-TCATTAATC-TTTAA
34764248 TTAATCT-A--ATTAATCTTTAA
1 TTAAT-TAATCATTAATCTTTAA
34764268 TTAATTAATC-TTAATCT
1 TTAATTAATCATTAATCT
34764285 CAATAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
19 1 0.03
20 11 0.33
21 14 0.42
24 6 0.18
25 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTAATCATTAATCTTTAA
Found at i:34764274 original size:15 final size:16
Alignment explanation
Indices: 34764248--34764284 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
34764238 AATCATTTAA
34764248 TTAATCTAATTAATCT
1 TTAATCTAATTAATCT
34764264 TTAAT-TAATTAATC-
1 TTAATCTAATTAATCT
34764278 TTAATCT
1 TTAATCT
34764285 CAATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 10 0.50
16 5 0.25
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATCTAATTAATCT
Found at i:34765040 original size:16 final size:15
Alignment explanation
Indices: 34765019--34765064 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
34765009 CATTAAATTT
*
34765019 TATTAATTGATATAAA
1 TATTAATTAAT-TAAA
34765035 TATTAATTAATTAAA
1 TATTAATTAATTAAA
*
34765050 GATTAATTAGATTAA
1 TATTAATTA-ATTAA
34765065 TTAAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 12 0.44
16 15 0.56
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (15 bp):
TATTAATTAATTAAA
Found at i:34765063 original size:20 final size:19
Alignment explanation
Indices: 34765036--34765090 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
34765026 TGATATAAAT
34765036 ATTAATTAATTAAAGATTA
1 ATTAATTAATTAAAGATTA
*
34765055 ATTAGATTAATTAAATTATTA
1 ATTA-ATTAATTAAA-GATTA
*
34765076 ATGAATTAATTAAAG
1 ATTAATTAATTAAAG
34765091 TATATATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 4 0.13
20 20 0.65
21 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (19 bp):
ATTAATTAATTAAAGATTA
Found at i:34767878 original size:70 final size:71
Alignment explanation
Indices: 34767804--34767949 Score: 195
Period size: 71 Copynumber: 2.1 Consensus size: 71
34767794 ACCCATCAGA
* * * * * *
34767804 GTATCGATAGAAGTG-CAGGGATGTTGAACTTTGGCTACTAATTTGACTTGTTTCGATAGAAGTC
1 GTATCGATAAAAGTGTAAGAGATGCTGAACTTTGGCTACTAACTTGACTTGTTTCGATAAAAGTC
34767868 CTCAAG
66 CTCAAG
* * * *
34767874 GTATCGGTAAAAGTGTAAGAGATGCTGATCTTTGGCTACTAACTTGACTTGTTTTGGTAAAAGTC
1 GTATCGATAAAAGTGTAAGAGATGCTGAACTTTGGCTACTAACTTGACTTGTTTCGATAAAAGTC
34767939 CTCAAG
66 CTCAAG
34767945 GTATC
1 GTATC
34767950 AGTAGCACTT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
70 13 0.20
71 52 0.80
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (71 bp):
GTATCGATAAAAGTGTAAGAGATGCTGAACTTTGGCTACTAACTTGACTTGTTTCGATAAAAGTC
CTCAAG
Found at i:34776236 original size:10 final size:10
Alignment explanation
Indices: 34776221--34776253 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
34776211 GTAGAGTTGT
34776221 TTTCTTGAAA
1 TTTCTTGAAA
34776231 TTTCTTGAAA
1 TTTCTTGAAA
34776241 TTTCTTGAGAA
1 TTTCTTGA-AA
34776252 TT
1 TT
34776254 GATCAAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (10 bp):
TTTCTTGAAA
Found at i:34777189 original size:20 final size:23
Alignment explanation
Indices: 34777164--34777211 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
34777154 TCAAATTCAG
*
34777164 TAAAATTATT-CA-A-GTTAAAT
1 TAAAATTATTACACATGTCAAAT
34777184 TAAAA-TATTACACATGTCAAAT
1 TAAAATTATTACACATGTCAAAT
34777206 TAAAAT
1 TAAAAT
34777212 ATGGTTACAG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 4 0.17
20 7 0.30
21 1 0.04
22 11 0.48
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.35
Consensus pattern (23 bp):
TAAAATTATTACACATGTCAAAT
Found at i:34777593 original size:127 final size:127
Alignment explanation
Indices: 34777361--34777602 Score: 430
Period size: 127 Copynumber: 1.9 Consensus size: 127
34777351 TACACCAATG
*
34777361 TATTATTTGAATTATTCGAATCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTTGA
1 TATTATTTGAATTATTCGAATCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
*
34777426 ATTACTTATTCGAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTAAATTTTAATA
66 ATTACTTATTCAAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTAAATTTTAATA
* *
34777488 TATTATTTGAATTATTCGAGTCATTTAAATTGTAAAATTCAACTCGACTCGAATTCGAAACTCGA
1 TATTATTTGAATTATTCGAATCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
* *
34777553 ATTACTTATTCAAGTTGGCTCAAATAACTCGGTTCTATTAACTTAAAATT
66 ATTACTTATTCAAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATT
34777603 CGAAAAAAAA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 109 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (127 bp):
TATTATTTGAATTATTCGAATCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
ATTACTTATTCAAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTAAATTTTAATA
Found at i:34781354 original size:12 final size:11
Alignment explanation
Indices: 34781336--34781389 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 11
34781326 TAAAAAGGAG
34781336 TAATAAATAAA
1 TAATAAATAAA
*
34781347 TGAATAAACGAAA
1 T-AATAAA-TAAA
34781360 TAAT-AATAAA
1 TAATAAATAAA
34781370 TAATAAAATAAA
1 TAAT-AAATAAA
34781382 TAAATAAA
1 T-AATAAA
34781390 CCAAGGCTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
10 7 0.19
11 3 0.08
12 19 0.53
13 7 0.19
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:34783075 original size:34 final size:35
Alignment explanation
Indices: 34783031--34783097 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
34783021 CAGTAAAATA
34783031 TTTTCCGTAAAATGATTT-CGGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
34783065 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
34783098 TTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:34784217 original size:22 final size:20
Alignment explanation
Indices: 34784192--34784234 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
34784182 AAACACAATA
34784192 ACAAGTCAATATTCTAATATTC
1 ACAA-TCAA-ATTCTAATATTC
* *
34784214 ACAATCAAATTTTATTATTC
1 ACAATCAAATTCTAATATTC
34784234 A
1 A
34784235 TTCCTGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 4 0.21
22 4 0.21
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (20 bp):
ACAATCAAATTCTAATATTC
Found at i:34789946 original size:16 final size:15
Alignment explanation
Indices: 34789918--34789953 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
34789908 TTATACATAT
34789918 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
34789933 TATTTTATATATTTTT
1 TATTTTA-ATATTTTA
34789949 TATTT
1 TATTT
34789954 ATAGTCATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:34790407 original size:11 final size:11
Alignment explanation
Indices: 34790386--34790487 Score: 90
Period size: 11 Copynumber: 9.5 Consensus size: 11
34790376 ATAAATCCTT
34790386 TCTCTAATTTCC
1 TCTC-AATTTCC
34790398 TCTCAATTTCC
1 TCTCAATTTCC
34790409 TCTCAAATTT-C
1 TCTC-AATTTCC
34790420 TCTCAAATTT-C
1 TCTC-AATTTCC
*
34790431 TCTCAAATT-C
1 TCTCAATTTCC
**
34790441 -CT--ATTTAG
1 TCTCAATTTCC
*
34790449 TCTCAATTTGC
1 TCTCAATTTCC
34790460 TCTCAATTTCC
1 TCTCAATTTCC
*
34790471 TCTCAAGTTCC
1 TCTCAATTTCC
34790482 TCTCAA
1 TCTCAA
34790488 ATCCCTATTT
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
7 3 0.04
9 4 0.05
10 5 0.06
11 57 0.73
12 9 0.12
ACGTcount: A:0.23, C:0.30, G:0.03, T:0.44
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:34790463 original size:51 final size:51
Alignment explanation
Indices: 34790398--34790498 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
34790388 TCTAATTTCC
* *
34790398 TCTCAATTTCCTCTCAAATTT-CTCTCAAATTTCTCTCAAATTCCTATTTAG
1 TCTCAATTTCCTCTC-AATTTCCTCTCAAATTCCTCTCAAATCCCTATTTAG
* *
34790449 TCTCAATTTGCTCTCAATTTCCTCTCAAGTTCCTCTCAAATCCCTATTTA
1 TCTCAATTTCCTCTCAATTTCCTCTCAAATTCCTCTCAAATCCCTATTTA
34790499 AAAGAGCTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 5 0.11
51 40 0.89
ACGTcount: A:0.24, C:0.30, G:0.03, T:0.44
Consensus pattern (51 bp):
TCTCAATTTCCTCTCAATTTCCTCTCAAATTCCTCTCAAATCCCTATTTAG
Found at i:34790685 original size:18 final size:18
Alignment explanation
Indices: 34790662--34790723 Score: 51
Period size: 18 Copynumber: 3.5 Consensus size: 18
34790652 TAAGTGTTAA
34790662 ATTTAATTTTTAAATATT
1 ATTTAATTTTTAAATATT
*
34790680 ATTTAAGATTTTT-TAT-TT
1 ATTT-A-ATTTTTAAATATT
*
34790698 ATGTAA-TTTTAAATAATT
1 ATTTAATTTTTAAAT-ATT
34790716 A-TTAATTT
1 ATTTAATTT
34790724 ATTATTTGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
15 4 0.12
16 3 0.09
17 4 0.12
18 14 0.41
19 3 0.09
20 6 0.18
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
ATTTAATTTTTAAATATT
Found at i:34791448 original size:16 final size:17
Alignment explanation
Indices: 34791424--34791466 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
34791414 CTCGAGTAAA
*
34791424 CCACCCATAT-ACATTC
1 CCACTCATATGACATTC
34791440 CCACTCATAATGACATTC
1 CCACTCAT-ATGACATTC
34791458 CCACTCATA
1 CCACTCATA
34791467 ACGAGGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 7 0.29
17 3 0.12
18 14 0.58
ACGTcount: A:0.33, C:0.40, G:0.02, T:0.26
Consensus pattern (17 bp):
CCACTCATATGACATTC
Found at i:34792806 original size:126 final size:126
Alignment explanation
Indices: 34792580--34792881 Score: 455
Period size: 126 Copynumber: 2.4 Consensus size: 126
34792570 CACGTGGGAG
* ** * **
34792580 ATTTTTTCAGGAGTTAC-GTAGTAAAAGCGCATCCACGTGGGAGCTTCTTTCAGTACTTATGTTG
1 ATTTTTTCAGGAGCTACTGTAAAAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTATGCAG
*
34792644 ACTAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATT
66 ACAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATT
* * * * * *
34792705 ATTTTTTCAAGAGCTACTGTAACAAAAGCGTGTCCACGTGGAAGCTTTTTTCAGTACTTCTGCAG
1 ATTTTTTCAGGAGCTACTGTAAAAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTATGCAG
34792770 ACAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATT
66 ACAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATT
*
34792831 ATTTTCTT-AGGAGCCACTGTAAAAAAAGCGCGTCCACGTGGGAGCTTCTTT
1 ATTTT-TTCAGGAGCTACTGTAAAAAAAGCGCGTCCACGTGGGAGCTTCTTT
34792882 AAATTAACAA
Statistics
Matches: 157, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
125 15 0.10
126 140 0.89
127 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (126 bp):
ATTTTTTCAGGAGCTACTGTAAAAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTATGCAG
ACAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATT
Found at i:34793132 original size:94 final size:96
Alignment explanation
Indices: 34792914--34793142 Score: 275
Period size: 94 Copynumber: 2.4 Consensus size: 96
34792904 GGTAACCGTA
* *
34792914 AACCCCAAACCCTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACTAAACCCTAAACTAAT
1 AACCCTAAACCCTAATTTAATTGA-TTTTTACTTAAAAACCCTAAACACTAAACCCTAAACTAAT
* *
34792979 TTATTATAAATTTATAATTCATTTACTCAAGT
65 TTATTATAAATTTATAATTAAATTACTCAAGT
* * * * * * *
34793011 AACCCTGAACCTTAATTTAATTAATTTTTCCTTAAAAACCCCT-AACTCTAAATCCTAATCTAAT
1 AACCCTAAACCCTAATTTAATTGATTTTTACTTAAAAA-CCCTAAACACTAAACCCTAAACTAAT
** *
34793075 TT-TTA-ATTTTTTTAATTAAATTACTCAAGT
65 TTATTATAAATTTATAATTAAATTACTCAAGT
* *
34793105 AACTCTAAACCCTAATTTAATTGATTTTTTCTTAAAAA
1 AACCCTAAACCCTAATTTAATTGATTTTTACTTAAAAA
34793143 ATAATAAACA
Statistics
Matches: 112, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
94 53 0.47
95 3 0.03
96 33 0.29
97 23 0.21
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (96 bp):
AACCCTAAACCCTAATTTAATTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAAACTAATT
TATTATAAATTTATAATTAAATTACTCAAGT
Found at i:34797290 original size:28 final size:29
Alignment explanation
Indices: 34797230--34797291 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
34797220 AAAGCCCTTT
* *
34797230 TTTTTTCAATATTTATCGAAATGGGCCGG
1 TTTTTTCAATATTTACCGAAATGGGCCGA
*
34797259 TTTTTT-AATTATTTACCGAAATGGTCC-A
1 TTTTTTCAA-TATTTACCGAAATGGGCCGA
34797287 TTTTT
1 TTTTT
34797292 CGCGAAATCG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.48
Consensus pattern (29 bp):
TTTTTTCAATATTTACCGAAATGGGCCGA
Found at i:34822488 original size:43 final size:43
Alignment explanation
Indices: 34822435--34822524 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 43
34822425 TTATGTGGAA
* * **
34822435 AAACGCCGCTATAGAACATGACCTTTAGCAGTGCTTTCCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCACTTTCCCCAC
**
34822478 AAACACCGCTAAAGAACATGACCTTTAGTGGCACTTTCCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCAGCACTTTCCCCAC
34822521 AAAC
1 AAAC
34822525 GCCACTAACT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.21
Consensus pattern (43 bp):
AAACACCGCTAAAGAACATGACCTTTAGCAGCACTTTCCCCAC
Found at i:34822853 original size:34 final size:34
Alignment explanation
Indices: 34822810--34822878 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
34822800 TTTCATCATA
*
34822810 TTCTGAAGCTGTAGTTGAAGTTTGTCATATTTTC
1 TTCTGAAGCTGTAGTTGAAGTTCGTCATATTTTC
34822844 TTCTGAAGCTGTAGTTGAAGTTCGTCATATTTTC
1 TTCTGAAGCTGTAGTTGAAGTTCGTCATATTTTC
34822878 T
1 T
34822879 GCTTGCCCCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.46
Consensus pattern (34 bp):
TTCTGAAGCTGTAGTTGAAGTTCGTCATATTTTC
Found at i:34823376 original size:13 final size:14
Alignment explanation
Indices: 34823350--34823378 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
34823340 ACAAATGACG
34823350 AATTAAACCATTAT
1 AATTAAACCATTAT
34823364 AATTAAA-CATTAT
1 AATTAAACCATTAT
34823377 AA
1 AA
34823379 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:34827666 original size:27 final size:27
Alignment explanation
Indices: 34827636--34827697 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
34827626 GATCTAAAGT
34827636 TTTATGTAAGTTATGATATGATATATA
1 TTTATGTAAGTTATGATATGATATATA
*
34827663 TTTATGTAAGTTATGATATGGTATATA
1 TTTATGTAAGTTATGATATGATATATA
34827690 TTTATGTA
1 TTTATGTA
34827698 TTATGTAAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (27 bp):
TTTATGTAAGTTATGATATGATATATA
Found at i:34827785 original size:13 final size:13
Alignment explanation
Indices: 34827767--34827793 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34827757 TGATTATCAT
34827767 CTTTAAATTTTAA
1 CTTTAAATTTTAA
34827780 CTTTAAATTTTAA
1 CTTTAAATTTTAA
34827793 C
1 C
34827794 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:34830090 original size:25 final size:25
Alignment explanation
Indices: 34830037--34830091 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
34830027 GTGATGCAGT
*
34830037 AGAGGAGTGTCAACGGCGATGCGAT
1 AGAGGAGTGTCAACGGCGATGCGAC
* * *
34830062 AGAGGAGTGTCGACGGCGATGTGGC
1 AGAGGAGTGTCAACGGCGATGCGAC
34830087 AGAGG
1 AGAGG
34830092 GGACAATCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.45, T:0.15
Consensus pattern (25 bp):
AGAGGAGTGTCAACGGCGATGCGAC
Found at i:34841798 original size:17 final size:17
Alignment explanation
Indices: 34841776--34841809 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34841766 GTTCTATAAC
34841776 TTAGTGAACTAGGTAGA
1 TTAGTGAACTAGGTAGA
34841793 TTAGTGAACTAGGTAGA
1 TTAGTGAACTAGGTAGA
34841810 CTTACTACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (17 bp):
TTAGTGAACTAGGTAGA
Found at i:34841931 original size:22 final size:22
Alignment explanation
Indices: 34841903--34841946 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
34841893 AGCAATATAA
34841903 TACTATAACTTAGTGAACTTTT
1 TACTATAACTTAGTGAACTTTT
34841925 TACTATAACTTAGTGAACTTTT
1 TACTATAACTTAGTGAACTTTT
34841947 ATGGTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (22 bp):
TACTATAACTTAGTGAACTTTT
Found at i:34843743 original size:19 final size:19
Alignment explanation
Indices: 34843719--34843758 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
34843709 ACAAATACAT
*
34843719 TACCAACTTAATTCAGATG
1 TACCAACTTAATTCAAATG
*
34843738 TACCAACTTAGTTCAAATG
1 TACCAACTTAATTCAAATG
34843757 TA
1 TA
34843759 ACTAAGTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (19 bp):
TACCAACTTAATTCAAATG
Found at i:34844719 original size:101 final size:98
Alignment explanation
Indices: 34844533--34844731 Score: 317
Period size: 101 Copynumber: 2.0 Consensus size: 98
34844523 ACTAGGCTCC
* *
34844533 TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGCTATGCTTTTCTCCAAAACCAACTGGA
1 TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGCTATGCGTTTCTCCAAAACCAAATGGA
34844598 GTACTAGTTGCTTTGCAATTTGGCATGGGGAAT
66 GTACTAGTTGCTTTGCAATTTGGCATGGGGAAT
*
34844631 TATAGGTTGATTCATTAACCTTCTCAAAAACACCTTGGCTTGATAGCGTTTCTCCAAAACCAAAT
1 TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGC-T-AT-GCGTTTCTCCAAAACCAAAT
* * *
34844696 GGAGTACTAGTTGCTTTGTAATTTTGCATTGGGAAT
63 GGAGTACTAGTTGCTTTGCAATTTGGCATGGGGAAT
34844732 CTGTTTAGGA
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
98 38 0.41
99 1 0.01
100 2 0.02
101 51 0.55
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (98 bp):
TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGCTATGCGTTTCTCCAAAACCAAATGGA
GTACTAGTTGCTTTGCAATTTGGCATGGGGAAT
Found at i:34857656 original size:86 final size:84
Alignment explanation
Indices: 34857373--34857918 Score: 516
Period size: 86 Copynumber: 6.5 Consensus size: 84
34857363 GATTAAGTCT
* * * * *
34857373 TCGTTTGGAAACAAAATTAAGATCGAATAAAACCTGTTAAA-CGGCGGGAATAAATCCCAAAATA
1 TCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTAAATC-GCGGGAATAAATCCCGAAATA
*
34857437 GA-TTATTCAA-TTTAATAC
65 GATTTATTTAATTTTAATAC
** * * * *
34857455 TAATTTGGAAACAAAATTACAAAT-GACTAAAATATGTTAAA-CGACTGGAATAAATCCCGAAAT
1 TCGTTTGGAAACAAAA-TAAAAATGGAATAAAATCTGTTAAATCG-CGGGAATAAATCCCGAAAT
**
34857518 AGA-TTATTTAA-TTTAATTT
64 AGATTTATTTAATTTTAATAC
** ** * * *
34857537 TAATTTGGAAACAAAA-ATAAAATAAAATAAAATCTGTTAAATAGCGGGAATAAATCCCGACACA
1 TCGTTTGGAAACAAAATA-AAAATGGAATAAAATCTGTTAAATCGCGGGAATAAATCCCGAAATA
* *
34857601 GATTTTATTTAATTTTAGTTTC
65 GA-TTTATTTAATTTTA-ATAC
* *
34857623 TCGTTTGGCAACAAAATAAAAATGGAATAAAATCTGTTAAATGGCGGGAATAAATCCCGAAATAG
1 TCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTAAATCGCGGGAATAAATCCCGAAATAG
34857688 ATTTTATTTAATTTTAATAC
66 A-TTTATTTAATTTTAATAC
* * * * * ** *
34857708 TCGTTTGGAAACAAGATCAAAATTGGAATAAAATCTATTGAACCGCGGGAATAAATCTTGAAACA
1 TCGTTTGGAAACAAAAT-AAAAATGGAATAAAATCTGTTAAATCGCGGGAATAAATCCCGAAATA
*
34857773 TATTTTATTTAATTTTAATAC
65 GA-TTTATTTAATTTTAATAC
* * * * *
34857794 TCGTTCTGGAAATAAAATCAAAATTGGAATAAAATCTGTTGAAT-GAGGGAATAAATCCCAAAAT
1 TCGTT-TGGAAACAAAAT-AAAAATGGAATAAAATCTGTTAAATCGCGGGAATAAATCCCGAAAT
34857858 AGATTTATTTAATTTTAATAC
64 AGATTTATTTAATTTTAATAC
* * * * *
34857879 TCTTTTTAGAAATAAAATAAAAAATTGAATAAAATTTGTT
1 TC-GTTTGGAAACAAAAT-AAAAATGGAATAAAATCTGTT
34857919 GAAGAACGAG
Statistics
Matches: 391, Mismatches: 60, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.00
81 5 0.01
82 111 0.28
83 5 0.01
84 8 0.02
85 70 0.18
86 156 0.40
87 35 0.09
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.32
Consensus pattern (84 bp):
TCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTAAATCGCGGGAATAAATCCCGAAATAG
ATTTATTTAATTTTAATAC
Found at i:34858769 original size:20 final size:20
Alignment explanation
Indices: 34858726--34858774 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
34858716 AGGGGTAGTT
* *
34858726 AAATCAATTTGATTAAAATC
1 AAATCAAATTGATTAAAATA
*
34858746 AAATCAAATTGATTAGAATA
1 AAATCAAATTGATTAAAATA
*
34858766 AAATAAAAT
1 AAATCAAAT
34858775 CAGGGTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATA
Found at i:34865341 original size:27 final size:28
Alignment explanation
Indices: 34865282--34865342 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
34865272 TGCCATATCA
* *
34865282 ATAGGC-GACACCAGTGACCCCTCTTTG
1 ATAGGCAGACACCAGTGACCCCTATTCG
**
34865309 GCAGGCAG-CACCAGTGACCCCTATTCG
1 ATAGGCAGACACCAGTGACCCCTATTCG
34865336 ATAGGCA
1 ATAGGCA
34865343 ATACAGGAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.18
Consensus pattern (28 bp):
ATAGGCAGACACCAGTGACCCCTATTCG
Found at i:34871832 original size:25 final size:25
Alignment explanation
Indices: 34871804--34871860 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
34871794 GAAAATTTTA
34871804 GAGAAAATCATCACCATTTTGAGCT
1 GAGAAAATCATCACCATTTTGAGCT
*
34871829 GAGAAAATCATCACCATTTTTAGCT
1 GAGAAAATCATCACCATTTTGAGCT
34871854 GA-AAAAT
1 GAGAAAAT
34871861 AGCCATTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (25 bp):
GAGAAAATCATCACCATTTTGAGCT
Found at i:34876704 original size:1 final size:1
Alignment explanation
Indices: 34876698--34876725 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
34876688 AAAGATCTGC
34876698 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
34876726 CCATAGAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:34877700 original size:26 final size:25
Alignment explanation
Indices: 34877670--34877762 Score: 66
Period size: 26 Copynumber: 3.4 Consensus size: 25
34877660 CCTTTGCCTA
34877670 TTTATTATTGTCATTATTATTTTATT
1 TTTATTATT-TCATTATTATTTTATT
*
34877696 TTTA-TATTT-ATTCTAGTTATCTTATCT
1 TTTATTATTTCA-T-TA-TTATTTTAT-T
34877723 ATTTATTATTACTCCCATTATTATTTTATT
1 -TTTATTATT--T--CATTATTATTTTATT
34877753 TTTA-TATTTC
1 TTTATTATTTC
34877763 TTCTAGTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 24
0.68 0.03 0.30
Matches are distributed among these distances:
23 1 0.02
24 3 0.06
25 6 0.11
26 13 0.24
27 1 0.02
28 8 0.15
29 8 0.15
30 1 0.02
31 9 0.17
32 2 0.04
33 1 0.02
34 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTATTATTTCATTATTATTTTATT
Found at i:34877772 original size:26 final size:26
Alignment explanation
Indices: 34877686--34877778 Score: 80
Period size: 26 Copynumber: 3.4 Consensus size: 26
34877676 ATTGTCATTA
* *
34877686 TTATTTTATTTTTATATTTATTCTAG
1 TTATCTTATTTTTATATTTCTTCTAG
* *
34877712 TTATCTTATCTATTTATTATTACTCCCATTA-
1 TTATCTTAT-T-TTTA-TATTTCT-TC--TAG
*
34877743 TTATTTTATTTTTATATTTCTTCTAG
1 TTATCTTATTTTTATATTTCTTCTAG
34877769 TTATCTTATT
1 TTATCTTATT
34877779 ATTTCTTTTA
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
25 2 0.04
26 17 0.33
27 2 0.04
28 10 0.19
29 9 0.17
30 2 0.04
31 8 0.15
32 2 0.04
ACGTcount: A:0.23, C:0.11, G:0.02, T:0.65
Consensus pattern (26 bp):
TTATCTTATTTTTATATTTCTTCTAG
Found at i:34880185 original size:13 final size:13
Alignment explanation
Indices: 34880169--34880194 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34880159 AATTTACGTA
34880169 AACAAATGGTTTT
1 AACAAATGGTTTT
34880182 AACAAATGGTTTT
1 AACAAATGGTTTT
34880195 TGGAAACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:34882524 original size:30 final size:30
Alignment explanation
Indices: 34882444--34882553 Score: 123
Period size: 30 Copynumber: 3.7 Consensus size: 30
34882434 GGTGATAACC
* *
34882444 ATCAAATTATG-AAAAGGAATGGCTTCGACT
1 ATCAAATTATGAAAAAGG-ATAGCTTCGGCT
* *
34882474 ATAAAATTATGAAAAGGGATAGCTTCGGCT
1 ATCAAATTATGAAAAAGGATAGCTTCGGCT
* * * *
34882504 ATCAAACTATGAAAAAGGATAACTTTGGTT
1 ATCAAATTATGAAAAAGGATAGCTTCGGCT
*
34882534 ATCGAATTATGAAAAAGGAT
1 ATCAAATTATGAAAAAGGAT
34882554 GTGTCAACCA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
30 62 0.93
31 5 0.07
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (30 bp):
ATCAAATTATGAAAAAGGATAGCTTCGGCT
Found at i:34884678 original size:15 final size:15
Alignment explanation
Indices: 34884658--34884694 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
34884648 ATCATAAAAC
34884658 CAAGGCATAAGCCAT
1 CAAGGCATAAGCCAT
34884673 CAAGGCATAAGCCAT
1 CAAGGCATAAGCCAT
34884688 CAAGGCA
1 CAAGGCA
34884695 AAACACACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.41, C:0.27, G:0.22, T:0.11
Consensus pattern (15 bp):
CAAGGCATAAGCCAT
Found at i:34885396 original size:4 final size:4
Alignment explanation
Indices: 34885387--34885411 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
34885377 AGGATGTTAG
34885387 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
34885412 TGAAAGTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:34896914 original size:31 final size:31
Alignment explanation
Indices: 34896876--34896935 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
34896866 TTAATTAAAG
*
34896876 TTCAGAGACTAATTTGTAAAAGCCTAATCGT
1 TTCAGAGACTAAATTGTAAAAGCCTAATCGT
*
34896907 TTCAGAGACTAAATTGTAAAAGTCTAATC
1 TTCAGAGACTAAATTGTAAAAGCCTAATC
34896936 ACTATTGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (31 bp):
TTCAGAGACTAAATTGTAAAAGCCTAATCGT
Found at i:34897165 original size:143 final size:142
Alignment explanation
Indices: 34896908--34897195 Score: 450
Period size: 143 Copynumber: 2.0 Consensus size: 142
34896898 CCTAATCGTT
* * *
34896908 TCAGAGACTAAATTGTAAAAGTCTAATCACTATTGATTTTTATATTGGAAAATTTCGATGACCTA
1 TCAGAAACTAAATTGTAAAAGTCCAATCACTATTGAATTTTATATTGGAAAATTTCGATGACCTA
* *
34896973 ATCGATAATTAACCAAGGGACCTAAATGGCAATTAACTCATTGTTTCTTATAAGATAGTGGATGA
66 ATCGATAATTAACCAAGGGACCTAAATAGCAATTAACTCATTGTTTCTTATAAGATAATGGATGA
34897038 TAACGATGATAG
131 TAACGATGATAG
* * *
34897050 TCAGAAACTAAATTGTAAAAGTCCATTCGCTATTGAATTTTATATTGGAAAATGTTTGATGACCT
1 TCAGAAACTAAATTGTAAAAGTCCAATCACTATTGAATTTTATATTGGAAAAT-TTCGATGACCT
* * **
34897115 AATTGGTAATTAACCAAGGGACCTAAATAGTTATTAACTCATTGTTTCTTATAAGATAATGGATG
65 AATCGATAATTAACCAAGGGACCTAAATAGCAATTAACTCATTGTTTCTTATAAGATAATGGATG
*
34897180 ATAATGATGATAG
130 ATAACGATGATAG
34897193 TCA
1 TCA
34897196 TTTAACTTTG
Statistics
Matches: 132, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
142 48 0.36
143 84 0.64
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (142 bp):
TCAGAAACTAAATTGTAAAAGTCCAATCACTATTGAATTTTATATTGGAAAATTTCGATGACCTA
ATCGATAATTAACCAAGGGACCTAAATAGCAATTAACTCATTGTTTCTTATAAGATAATGGATGA
TAACGATGATAG
Found at i:34897313 original size:59 final size:60
Alignment explanation
Indices: 34897248--34897367 Score: 233
Period size: 59 Copynumber: 2.0 Consensus size: 60
34897238 AATCAACTAA
34897248 ACACGATTAAGTTTATTAATTAAGCTATTAATCTAAATAAATATATATAT-TATATATAT
1 ACACGATTAAGTTTATTAATTAAGCTATTAATCTAAATAAATATATATATATATATATAT
34897307 ACACGATTAAGTTTATTAATTAAGCTATTAATCTAAATAAATATATATATATATATATAT
1 ACACGATTAAGTTTATTAATTAAGCTATTAATCTAAATAAATATATATATATATATATAT
34897367 A
1 A
34897368 TATATATCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 50 0.83
60 10 0.17
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (60 bp):
ACACGATTAAGTTTATTAATTAAGCTATTAATCTAAATAAATATATATATATATATATAT
Found at i:34897354 original size:2 final size:2
Alignment explanation
Indices: 34897347--34897374 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
34897337 ATCTAAATAA
34897347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34897375 CAAATAGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:34903348 original size:29 final size:29
Alignment explanation
Indices: 34903311--34903366 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
34903301 ATTAAGTTTG
* * *
34903311 AAAGTTTAATTAAATTTTTAAAAAAAATA
1 AAAGCTTAATAAAATATTTAAAAAAAATA
34903340 AAAGCTTAATAAAATATTTAAAAAAAA
1 AAAGCTTAATAAAATATTTAAAAAAAA
34903367 CTTGATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (29 bp):
AAAGCTTAATAAAATATTTAAAAAAAATA
Found at i:34919186 original size:11 final size:11
Alignment explanation
Indices: 34919170--34919196 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
34919160 ATTTTATAAT
34919170 ACATATTCATA
1 ACATATTCATA
34919181 ACATATTCATA
1 ACATATTCATA
34919192 ACATA
1 ACATA
34919197 CCACTACCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (11 bp):
ACATATTCATA
Found at i:34920365 original size:23 final size:23
Alignment explanation
Indices: 34920331--34920384 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
34920321 ATTCTGGAAA
34920331 ACACAAAATAAGGTTTGGGTCATT
1 ACAC-AAATAAGGTTTGGGTCATT
34920355 ACACAAATAAGGTTTGGGTCATT
1 ACACAAATAAGGTTTGGGTCATT
34920378 ACACAAA
1 ACACAAA
34920385 GTAGTCTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 26 0.87
24 4 0.13
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.26
Consensus pattern (23 bp):
ACACAAATAAGGTTTGGGTCATT
Found at i:34923436 original size:17 final size:18
Alignment explanation
Indices: 34923404--34923438 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
34923394 GAAAACTTCA
34923404 AATAATTATGTGATAAAT
1 AATAATTATGTGATAAAT
*
34923422 AATAA-TATGTTATAAAT
1 AATAATTATGTGATAAAT
34923439 TAAAGTACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (18 bp):
AATAATTATGTGATAAAT
Found at i:34927880 original size:20 final size:21
Alignment explanation
Indices: 34927837--34927879 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
34927827 ATAAAAACAC
34927837 AAATATACATAAATAGTTTAA
1 AAATATACATAAATAGTTTAA
*
34927858 AAATATA-ATAAAT-TTTTAA
1 AAATATACATAAATAGTTTAA
34927877 AAA
1 AAA
34927880 ACCATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 6 0.29
21 7 0.33
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
AAATATACATAAATAGTTTAA
Found at i:34928752 original size:17 final size:17
Alignment explanation
Indices: 34928723--34928768 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
34928713 TTATTATAAT
*
34928723 TTTTAATATATTTGTGTA
1 TTTTAATA-ATTTGTATA
*
34928741 TTTTAATAATTTTTATA
1 TTTTAATAATTTGTATA
*
34928758 TTTTAAGAATT
1 TTTTAATAATT
34928769 AGGATCAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (17 bp):
TTTTAATAATTTGTATA
Found at i:34929256 original size:31 final size:31
Alignment explanation
Indices: 34929218--34929284 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
34929208 TTAATATAAT
* * ** *
34929218 ATTTGATATTTGAATATGATTTTTTTTTTTA
1 ATTTGATACTCGAATATGACATTTTTTCTTA
*
34929249 ATTTGATACTCGAATTTGACATTTTTTCTTA
1 ATTTGATACTCGAATATGACATTTTTTCTTA
34929280 ATTTG
1 ATTTG
34929285 GTACCTAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.06, G:0.10, T:0.58
Consensus pattern (31 bp):
ATTTGATACTCGAATATGACATTTTTTCTTA
Found at i:34929295 original size:30 final size:31
Alignment explanation
Indices: 34929239--34929297 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
34929229 GAATATGATT
*
34929239 TTTTTTTTTAATTTGATACTCGAATTTGACA
1 TTTTTTCTTAATTTGATACTCGAATTTGACA
* *
34929270 TTTTTTCTTAATTTGGTAC-CTAATTTGA
1 TTTTTTCTTAATTTGATACTCGAATTTGA
34929298 TACTTGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.56
Consensus pattern (31 bp):
TTTTTTCTTAATTTGATACTCGAATTTGACA
Found at i:34929331 original size:41 final size:43
Alignment explanation
Indices: 34929247--34929333 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 43
34929237 TTTTTTTTTT
*
34929247 TAATTTGATACTCGAATTTGACATTTTTTCTTAATTTGGTACC
1 TAATTTGATACTCGAATTTGACATTTTTTCTTAATTTGATACC
* *
34929290 TAATTTGATACTTGAATTTGA-TTTTTTTC-TAATTTGATACC
1 TAATTTGATACTCGAATTTGACATTTTTTCTTAATTTGATACC
34929331 TAA
1 TAA
34929334 ACTTTTTTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 14 0.34
42 7 0.17
43 20 0.49
ACGTcount: A:0.28, C:0.11, G:0.10, T:0.51
Consensus pattern (43 bp):
TAATTTGATACTCGAATTTGACATTTTTTCTTAATTTGATACC
Found at i:34930364 original size:18 final size:17
Alignment explanation
Indices: 34930334--34930393 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
34930324 AGGCACTAAC
34930334 AATAAAAATAATATTTT
1 AATAAAAATAATATTTT
*
34930351 AATAAAAATGAATAAATTT
1 AATAAAAAT-AAT-ATTTT
*
34930370 -A-AAAAACAATATTTT
1 AATAAAAATAATATTTT
34930385 AATATAAAA
1 AATA-AAAA
34930394 ATAAGTGAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
15 4 0.11
16 4 0.11
17 15 0.43
18 8 0.23
19 4 0.11
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
AATAAAAATAATATTTT
Found at i:34931096 original size:34 final size:34
Alignment explanation
Indices: 34931045--34931168 Score: 108
Period size: 34 Copynumber: 3.6 Consensus size: 34
34931035 TAATTAATGT
* *
34931045 TCTTT-TACTTTATTGATTGGTTAGTAATTAACA
1 TCTTTCTACTGTAATGATTGGTTAGTAATTAACA
* * *
34931078 TCTTTCTACTGTAATGATTAAG-AATTAATTATTACA
1 TCTTTCTACTGTAATGATT-GGTTAGTAATTA--ACA
** * *
34931114 TCTCCACTTACTTTATTGATTGGTTAGTAATTAACA
1 TCT-TTC-TACTGTAATGATTGGTTAGTAATTAACA
34931150 TCTTTCTACTGTAATGATT
1 TCTTTCTACTGTAATGATT
34931169 AAGAATTAAT
Statistics
Matches: 68, Mismatches: 16, Indels: 13
0.70 0.16 0.13
Matches are distributed among these distances:
33 5 0.07
34 29 0.43
35 2 0.03
36 12 0.18
37 2 0.03
38 18 0.26
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (34 bp):
TCTTTCTACTGTAATGATTGGTTAGTAATTAACA
Found at i:34931131 original size:72 final size:72
Alignment explanation
Indices: 34931049--34931199 Score: 275
Period size: 72 Copynumber: 2.1 Consensus size: 72
34931039 TAATGTTCTT
*
34931049 TTACTTTATTGATTGGTTAGTAATTAACATCTTTCTACTGTAATGATTAAGAATTAATTATTACA
1 TTACTTTATTGATTGGTTAGTAATTAACATCTTTCTACTGTAATGATTAAGAATTAATTATCACA
34931114 TCTCCAC
66 TCTCCAC
*
34931121 TTACTTTATTGATTGGTTAGTAATTAACATCTTTCTACTGTAATGATTAAGAATTAATTATCACC
1 TTACTTTATTGATTGGTTAGTAATTAACATCTTTCTACTGTAATGATTAAGAATTAATTATCACA
34931186 TCTCCAC
66 TCTCCAC
*
34931193 TCACTTT
1 TTACTTT
34931200 TTTATCTCAT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 76 1.00
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.44
Consensus pattern (72 bp):
TTACTTTATTGATTGGTTAGTAATTAACATCTTTCTACTGTAATGATTAAGAATTAATTATCACA
TCTCCAC
Found at i:34931179 original size:34 final size:34
Alignment explanation
Indices: 34931069--34931180 Score: 109
Period size: 34 Copynumber: 3.2 Consensus size: 34
34931059 GATTGGTTAG
34931069 TAATTAACATCTTTCTACTGTAATGATTAAGAAT
1 TAATTAACATCTTTCTACTGTAATGATTAAGAAT
** * * * * *
34931103 TAATTATTACATCTCCACTTACTTTATTGATT-GGTTAG
1 TAATTA--ACATCT-TTC-TACTGTAATGATTAAG-AAT
34931141 TAATTAACATCTTTCTACTGTAATGATTAAGAAT
1 TAATTAACATCTTTCTACTGTAATGATTAAGAAT
34931175 TAATTA
1 TAATTA
34931181 TCACCTCTCC
Statistics
Matches: 58, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
34 24 0.41
35 2 0.03
36 12 0.21
37 2 0.03
38 18 0.31
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (34 bp):
TAATTAACATCTTTCTACTGTAATGATTAAGAAT
Found at i:34931275 original size:28 final size:27
Alignment explanation
Indices: 34931239--34931292 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
34931229 TTATTATTGT
*
34931239 ATTATTATTAAATATTATAAGTATTATC
1 ATTATTATTAAAGA-TATAAGTATTATC
34931267 ATTATTATTAAAGATATAAGTATTAT
1 ATTATTATTAAAGATATAAGTATTAT
34931293 TATTCAACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (27 bp):
ATTATTATTAAAGATATAAGTATTATC
Found at i:34934713 original size:18 final size:19
Alignment explanation
Indices: 34934690--34934734 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
34934680 AAATGTACTA
34934690 ATTAATTT-TTTGGACCAC
1 ATTAATTTCTTTGGACCAC
34934708 ATTAATTTCTTTGGACCAC
1 ATTAATTTCTTTGGACCAC
34934727 ATTAATTT
1 ATTAATTT
34934735 AAGATATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTAATTTCTTTGGACCAC
Found at i:34939468 original size:25 final size:25
Alignment explanation
Indices: 34939420--34939470 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
34939410 GTTCGAGTAA
*
34939420 TTTAAAAATATTTTTTATTTTTTAT
1 TTTAAAAATATTTTTTATTGTTTAT
34939445 TTTAAAAATATTTTTT-TGTGTTTAT
1 TTTAAAAATATTTTTTAT-TGTTTAT
34939470 T
1 T
34939471 AAAAATCGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (25 bp):
TTTAAAAATATTTTTTATTGTTTAT
Found at i:34942390 original size:22 final size:22
Alignment explanation
Indices: 34942358--34942406 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
34942348 ATTTTTTATG
*
34942358 TTATTTGTGAAACTTATTTATTT
1 TTATTTGTGAAACTT-GTTATTT
*
34942381 TTATTT-TGAACCTTGTTATTT
1 TTATTTGTGAAACTTGTTATTT
34942402 TTATT
1 TTATT
34942407 ATTTTGATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
22 7 0.29
23 6 0.25
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.63
Consensus pattern (22 bp):
TTATTTGTGAAACTTGTTATTT
Found at i:34942472 original size:21 final size:20
Alignment explanation
Indices: 34942438--34942477 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
34942428 CGACATTGTA
*
34942438 ATTTTTTTATCTTCTTATTT
1 ATTTTTTTAACTTCTTATTT
34942458 ATTTTGTTTAACTTCTTATT
1 ATTTT-TTTAACTTCTTATT
34942478 AGTCTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.17, C:0.10, G:0.03, T:0.70
Consensus pattern (20 bp):
ATTTTTTTAACTTCTTATTT
Found at i:34943915 original size:24 final size:24
Alignment explanation
Indices: 34943887--34943938 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
34943877 TTAGTAAGTC
* *
34943887 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
34943911 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
34943935 AAAT
1 AAAT
34943939 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:34945861 original size:24 final size:24
Alignment explanation
Indices: 34945833--34945885 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
34945823 ATTAGTAAGT
*
34945833 TAAATAAACTATGCTAATAAATAC
1 TAAATAAACTATACTAATAAATAC
* *
34945857 TAAATATATTATACTAATAAATAC
1 TAAATAAACTATACTAATAAATAC
34945881 TAAAT
1 TAAAT
34945886 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (24 bp):
TAAATAAACTATACTAATAAATAC
Found at i:34946353 original size:12 final size:12
Alignment explanation
Indices: 34946338--34946362 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34946328 AAAAACACCA
34946338 TTGAAGCAGATT
1 TTGAAGCAGATT
34946350 TTGAAGCAGATT
1 TTGAAGCAGATT
34946362 T
1 T
34946363 CTATCATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (12 bp):
TTGAAGCAGATT
Found at i:34950346 original size:39 final size:42
Alignment explanation
Indices: 34950303--34950397 Score: 106
Period size: 45 Copynumber: 2.3 Consensus size: 42
34950293 GTGGATATGA
* *
34950303 TATTTCAAAT-GT-T-TTTATATGTGAAATATTTCAATTAAT
1 TATTTCAAATAGTATGTTTACATGTGAAATATTTCAAATAAT
*
34950342 TATTTCAAATATCATTATGTTTACATGTGAAATATTTCAAATAAT
1 TATTTC-AA-AT-AGTATGTTTACATGTGAAATATTTCAAATAAT
*
34950387 TATTTTAAATA
1 TATTTCAAATA
34950398 CACATACAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
39 6 0.13
40 2 0.04
41 2 0.04
42 1 0.02
43 3 0.07
44 3 0.07
45 29 0.63
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (42 bp):
TATTTCAAATAGTATGTTTACATGTGAAATATTTCAAATAAT
Found at i:34952126 original size:41 final size:41
Alignment explanation
Indices: 34952066--34952145 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
34952056 GCATGTGTAC
*
34952066 ATAATTTTGTATAAGATTCTGAATTTGTTTGAGTTTTTTTA
1 ATAATTTTGTAAAAGATTCTGAATTTGTTTGAGTTTTTTTA
*
34952107 ATAATTTTGTAAAATATTCTGAATTTGTTTGAGTTTTTT
1 ATAATTTTGTAAAAGATTCTGAATTTGTTTGAGTTTTTT
34952146 CTTTGAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.28, C:0.03, G:0.14, T:0.56
Consensus pattern (41 bp):
ATAATTTTGTAAAAGATTCTGAATTTGTTTGAGTTTTTTTA
Found at i:34955359 original size:2 final size:2
Alignment explanation
Indices: 34955352--34955383 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
34955342 TCTTATAAAA
*
34955352 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34955384 TTATCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:34956238 original size:22 final size:21
Alignment explanation
Indices: 34956210--34956251 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
34956200 TTTTAAATTT
*
34956210 AAAAACATCACGAAAAGATGTG
1 AAAAACATCAC-AAAAAATGTG
34956232 AAAAACATCACAAAAAATGT
1 AAAAACATCACAAAAAATGT
34956252 TTTAATTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (21 bp):
AAAAACATCACAAAAAATGTG
Found at i:34956332 original size:61 final size:60
Alignment explanation
Indices: 34956206--34956343 Score: 165
Period size: 62 Copynumber: 2.3 Consensus size: 60
34956196 ATTTTTTTAA
* *
34956206 ATTTAAAAACATCACGAAAAGATGTGAAAAACATCACAAAAAATGTTTTAATTTGGTAAG
1 ATTTAAAAACATCACGAAAAAATGTGAAAAAAATCACAAAAAATGTTTTAATTTGGTAAG
* * *
34956266 ATTTAAAAA-ATCACTAAAAAATGTGAAAAAAAAAATCACCAAAAATGTTTT-GTTTGGTACA-
1 ATTTAAAAACATCACGAAAAAATGTG---AAAAAAATCACAAAAAATGTTTTAATTTGGTA-AG
*
34956327 TTTTAAAAACATCACGA
1 ATTTAAAAACATCACGA
34956344 TATATCTTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
59 14 0.21
60 9 0.14
61 15 0.23
62 28 0.42
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.28
Consensus pattern (60 bp):
ATTTAAAAACATCACGAAAAAATGTGAAAAAAATCACAAAAAATGTTTTAATTTGGTAAG
Found at i:34956695 original size:11 final size:11
Alignment explanation
Indices: 34956679--34956711 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
34956669 TTGGATTTTC
34956679 ACAATTTTTAA
1 ACAATTTTTAA
34956690 ACAA-TTTTAA
1 ACAATTTTTAA
34956700 AGCAATTTTTAA
1 A-CAATTTTTAA
34956712 TCATTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 7 0.35
11 7 0.35
12 6 0.30
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.42
Consensus pattern (11 bp):
ACAATTTTTAA
Found at i:34956811 original size:19 final size:19
Alignment explanation
Indices: 34956784--34956833 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
34956774 ACTTTAGAAC
* *
34956784 TTTTAATATTTTATAATAA
1 TTTTTATATTTTAAAATAA
34956803 TTTTTATATTTTTAAAATAA
1 TTTTTATA-TTTTAAAATAA
* *
34956823 ATTTTAAATTT
1 TTTTTATATTT
34956834 CCTAAATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTATATTTTAAAATAA
Found at i:34956815 original size:20 final size:20
Alignment explanation
Indices: 34956792--34956833 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
34956782 ACTTTTAATA
* * *
34956792 TTTTATAATAATTTTTATAT
1 TTTTAAAATAAATTTTAAAT
34956812 TTTTAAAATAAATTTTAAAT
1 TTTTAAAATAAATTTTAAAT
34956832 TT
1 TT
34956834 CCTAAATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTAAAATAAATTTTAAAT
Found at i:34956839 original size:21 final size:20
Alignment explanation
Indices: 34956784--34956839 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
34956774 ACTTTAGAAC
* *
34956784 TTTTAATATTT-TATAATAAT
1 TTTTAA-ATTTCTAAAATAAA
* *
34956804 TTTTATATTTTTAAAATAAA
1 TTTTAAATTTCTAAAATAAA
34956824 TTTTAAATTTCCTAAA
1 TTTTAAATTT-CTAAA
34956840 TATTCTTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 4 0.14
20 21 0.72
21 4 0.14
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTAAATTTCTAAAATAAA
Found at i:34962226 original size:13 final size:14
Alignment explanation
Indices: 34962193--34962244 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
34962183 AATAATTAAT
*
34962193 TAAACATAAAAGAAA
1 TAAA-ATAAAGGAAA
34962208 TAAAATAAAGGAAA
1 TAAAATAAAGGAAA
* *
34962222 T-AAATAAAGTAAGT
1 TAAAATAAAGGAA-A
34962236 TAAAATAAA
1 TAAAATAAA
34962245 AAAGGAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 10 0.31
14 11 0.34
15 11 0.34
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (14 bp):
TAAAATAAAGGAAA
Found at i:34966840 original size:14 final size:14
Alignment explanation
Indices: 34966821--34966848 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34966811 GAGCTTATGA
34966821 GTTTTGGTTATAGG
1 GTTTTGGTTATAGG
34966835 GTTTTGGTTATAGG
1 GTTTTGGTTATAGG
34966849 CAAATGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (14 bp):
GTTTTGGTTATAGG
Found at i:34967001 original size:24 final size:25
Alignment explanation
Indices: 34966974--34967021 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
34966964 AGAGGAAAGT
34966974 TTAAAGAACATAAAA-GAAAAAAAA
1 TTAAAGAACATAAAATGAAAAAAAA
** *
34966998 TTAAATTACTTAAAATGAAAAAAA
1 TTAAAGAACATAAAATGAAAAAAA
34967022 TATGGGGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (25 bp):
TTAAAGAACATAAAATGAAAAAAAA
Found at i:34973687 original size:9 final size:9
Alignment explanation
Indices: 34973673--34973703 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
34973663 GTTAAACGAA
34973673 TCGAGTTAT
1 TCGAGTTAT
*
34973682 TCGAGTTAA
1 TCGAGTTAT
34973691 TCGAGTTAT
1 TCGAGTTAT
34973700 TCGA
1 TCGA
34973704 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:34973774 original size:9 final size:9
Alignment explanation
Indices: 34973757--34973793 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
34973747 TGAGTTTTCA
34973757 AATTCGAAT
1 AATTCGAAT
*
34973766 AACTCGAAT
1 AATTCGAAT
34973775 AATTCGAAT
1 AATTCGAAT
34973784 AATTCGAAT
1 AATTCGAAT
34973793 A
1 A
34973794 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:34975193 original size:5 final size:5
Alignment explanation
Indices: 34975183--34975208 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
34975173 CTCGAAAATT
34975183 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
34975209 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:34979100 original size:16 final size:16
Alignment explanation
Indices: 34979079--34979112 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
34979069 AAAAGAGAGA
34979079 TGTGATTGGCTGTATT
1 TGTGATTGGCTGTATT
34979095 TGTGATTGGCTGTATT
1 TGTGATTGGCTGTATT
34979111 TG
1 TG
34979113 GGTGATCGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.06, G:0.32, T:0.50
Consensus pattern (16 bp):
TGTGATTGGCTGTATT
Found at i:34979703 original size:18 final size:21
Alignment explanation
Indices: 34979662--34979703 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
34979652 CTTCCCAAAA
34979662 ATTATTGCGCAGGAACCTATT
1 ATTATTGCGCAGGAACCTATT
*
34979683 ATTATTGCGCAGGAACATATT
1 ATTATTGCGCAGGAACCTATT
34979704 GGCTTTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (21 bp):
ATTATTGCGCAGGAACCTATT
Found at i:34980311 original size:51 final size:51
Alignment explanation
Indices: 34980230--34980332 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
34980220 ATCATAAAAG
** *
34980230 ATATTCTGGATTTGTTCTGTGGTTTTTGTGGGCATCTTATTAATGCAAGGA
1 ATATTCTGGATCGGTTCTGTGGTTTCTGTGGGCATCTTATTAATGCAAGGA
34980281 ATATTCTGGATCGGTTCTGTGGTTTCTGTGGGCATCTTATTAATGCAAGGA
1 ATATTCTGGATCGGTTCTGTGGTTTCTGTGGGCATCTTATTAATGCAAGGA
34980332 A
1 A
34980333 GACCAACATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.20, C:0.12, G:0.26, T:0.42
Consensus pattern (51 bp):
ATATTCTGGATCGGTTCTGTGGTTTCTGTGGGCATCTTATTAATGCAAGGA
Found at i:34980793 original size:32 final size:32
Alignment explanation
Indices: 34980752--34980820 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
34980742 AGACTTCATG
34980752 ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
1 ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
*
34980784 ATCAAAACATATCCTTTCTTTTGAAGCTGGGT
1 ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
*
34980816 TTCAA
1 ATCAA
34980821 CATTGTTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (32 bp):
ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
Found at i:34983157 original size:64 final size:64
Alignment explanation
Indices: 34983030--34983157 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
34983020 AGCTTACGAG
*
34983030 GCCTTAAAAATAGTTTAGAAACAATCAAAGACCAATTCGAAACAAATCAAAAAGTTTAGGAAAA
1 GCCTTAAAAATAGTTTAGAAACAATCAAAGACCAATTCGAAACAAATCAAAAAGTTAAGGAAAA
* * *
34983094 GCCTTAAAAATAGTTTAGAAACAATCAGAGACCAATTCGAAACAAATCAAAAGGTTAATGAAAA
1 GCCTTAAAAATAGTTTAGAAACAATCAAAGACCAATTCGAAACAAATCAAAAAGTTAAGGAAAA
34983158 ATTTGAAAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.52, C:0.14, G:0.13, T:0.20
Consensus pattern (64 bp):
GCCTTAAAAATAGTTTAGAAACAATCAAAGACCAATTCGAAACAAATCAAAAAGTTAAGGAAAA
Found at i:34986113 original size:43 final size:43
Alignment explanation
Indices: 34986059--34986180 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 43
34986049 CTCTTACAAA
*
34986059 GCCAACGTCCCAGACGTGGTCTTACATGCAAACACATA-TCGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGCAAACACA-AGTCGAT
* * *
34986102 GCC-ACTGTCCCAGACAG-GGTCTTACACGTAAACACAAGTTGTT
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACGCAAACACAAGTCGAT
34986145 GCCAACGTCCCAGACGTGGTCTTACACG-ATAACACA
1 GCCAACGTCCCAGACGTGGTCTTACACGCA-AACACA
34986181 TACCGAAAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
42 5 0.07
43 61 0.88
44 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTGGTCTTACACGCAAACACAAGTCGAT
Found at i:34986456 original size:43 final size:43
Alignment explanation
Indices: 34986402--34986523 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 43
34986392 CTCTTACAAA
*
34986402 GCCAACGTCCCAGACGTGGTCTTACATGCAAACACATA-TCGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGCAAACACA-AGTCGAT
* * *
34986445 GCC-ACTGTCCCAGACAG-GGTCTTACACGTAAACACAAGTTGTT
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACGCAAACACAAGTCGAT
34986488 GCCAACGTCCCAGACGTGGTCTTACACG-ATAACACA
1 GCCAACGTCCCAGACGTGGTCTTACACGCA-AACACA
34986524 TACCGAAAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
42 5 0.07
43 61 0.88
44 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTGGTCTTACACGCAAACACAAGTCGAT
Found at i:34986596 original size:343 final size:343
Alignment explanation
Indices: 34985970--34986661 Score: 1368
Period size: 343 Copynumber: 2.0 Consensus size: 343
34985960 CATTATTAAT
34985970 TCAATTTCACATTCGGTCATCACTTAACATTGCCCGTTGAACCACTTGGAACTAAAAAGGATACG
1 TCAATTTCACATTCGGTCATCACTTAACATTGCCCGTTGAACCACTTGGAACTAAAAAGGATACG
34986035 TGGATAGTCGAAAACTCTTACAAAGCCAACGTCCCAGACGTGGTCTTACATGCAAACACATATCG
66 TGGATAGTCGAAAACTCTTACAAAGCCAACGTCCCAGACGTGGTCTTACATGCAAACACATATCG
34986100 ATGCCACTGTCCCAGACAGGGTCTTACACGTAAACACAAGTTGTTGCCAACGTCCCAGACGTGGT
131 ATGCCACTGTCCCAGACAGGGTCTTACACGTAAACACAAGTTGTTGCCAACGTCCCAGACGTGGT
34986165 CTTACACGATAACACATACCGAAAATCCTATGTCATGACATATGTATCCTATCTATTCCTAGGGT
196 CTTACACGATAACACATACCGAAAATCCTATGTCATGACATATGTATCCTATCTATTCCTAGGGT
34986230 TCGTATGGGACTTTCAGACAACGTATCTCGATCGAATCGAACTCGAAATA-TCGCTCATTTGCTC
261 TCGTATGGGACTTTCAGACAACGTATCTCGATCGAATCGAA-TCGAAATATTCGCTCATTTGCTC
34986294 AATATACATTCGACCATAC
325 AATATACATTCGACCATAC
34986313 TCAATTTCACATTCGGTCATCACTTAACATTGCCCGTTGAACCACTTGGAACTAAAAAGGATACG
1 TCAATTTCACATTCGGTCATCACTTAACATTGCCCGTTGAACCACTTGGAACTAAAAAGGATACG
34986378 TGGATAGTCGAAAACTCTTACAAAGCCAACGTCCCAGACGTGGTCTTACATGCAAACACATATCG
66 TGGATAGTCGAAAACTCTTACAAAGCCAACGTCCCAGACGTGGTCTTACATGCAAACACATATCG
34986443 ATGCCACTGTCCCAGACAGGGTCTTACACGTAAACACAAGTTGTTGCCAACGTCCCAGACGTGGT
131 ATGCCACTGTCCCAGACAGGGTCTTACACGTAAACACAAGTTGTTGCCAACGTCCCAGACGTGGT
34986508 CTTACACGATAACACATACCGAAAATCCTATGTCATGACATATGTATCCTATCTATTCCTAGGGT
196 CTTACACGATAACACATACCGAAAATCCTATGTCATGACATATGTATCCTATCTATTCCTAGGGT
34986573 TCGTATGGGACTTTCAGACAACGTATCTCGATCGAATCGAATCGAAATATTCGCTCATTTGCTCA
261 TCGTATGGGACTTTCAGACAACGTATCTCGATCGAATCGAATCGAAATATTCGCTCATTTGCTCA
34986638 ATATACATTCGACCATAC
326 ATATACATTCGACCATAC
34986656 TCAATT
1 TCAATT
34986662 ATATTCACAA
Statistics
Matches: 348, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
342 8 0.02
343 340 0.98
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (343 bp):
TCAATTTCACATTCGGTCATCACTTAACATTGCCCGTTGAACCACTTGGAACTAAAAAGGATACG
TGGATAGTCGAAAACTCTTACAAAGCCAACGTCCCAGACGTGGTCTTACATGCAAACACATATCG
ATGCCACTGTCCCAGACAGGGTCTTACACGTAAACACAAGTTGTTGCCAACGTCCCAGACGTGGT
CTTACACGATAACACATACCGAAAATCCTATGTCATGACATATGTATCCTATCTATTCCTAGGGT
TCGTATGGGACTTTCAGACAACGTATCTCGATCGAATCGAATCGAAATATTCGCTCATTTGCTCA
ATATACATTCGACCATAC
Found at i:34987600 original size:125 final size:126
Alignment explanation
Indices: 34987378--34987634 Score: 500
Period size: 125 Copynumber: 2.1 Consensus size: 126
34987368 TAAAAGATGT
34987378 TAATGGCTCTCTTTTTTTTTTAACTTATGATTGTTTTTTTATTATAATAACTTTATAATATATTA
1 TAATGGCTCTCTTTTTTTTTTAACTTATGATTGTTTTTTTATTATAATAACTTTATAATATATTA
34987443 TTTTTTATAATTATTATAAAAACTATATAATATATACATAGTGCCGTCCA-TCATTAATTC
66 TTTTTTATAATTATTATAAAAACTATATAATATATACATAGTGCCGTCCACTCATTAATTC
34987503 TAATGGCTCTCTTTTTTTTTTAACTTATGATTGTTTTTTTATTATAATAACTTTATAATATATTA
1 TAATGGCTCTCTTTTTTTTTTAACTTATGATTGTTTTTTTATTATAATAACTTTATAATATATTA
34987568 TTTTTTATAATTATTATAAAAACTATATAATATATACATAGTGCCGTCCACTCATTAATTC
66 TTTTTTATAATTATTATAAAAACTATATAATATATACATAGTGCCGTCCACTCATTAATTC
34987629 -AATGGC
1 TAATGGC
34987635 AAAACTGCAA
Statistics
Matches: 131, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
125 121 0.92
126 10 0.08
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (126 bp):
TAATGGCTCTCTTTTTTTTTTAACTTATGATTGTTTTTTTATTATAATAACTTTATAATATATTA
TTTTTTATAATTATTATAAAAACTATATAATATATACATAGTGCCGTCCACTCATTAATTC
Found at i:34988474 original size:9 final size:9
Alignment explanation
Indices: 34988457--34988522 Score: 78
Period size: 9 Copynumber: 7.3 Consensus size: 9
34988447 TGGCTAAAAC
*
34988457 TTACTCGAA
1 TTACCCGAA
34988466 TTACCCGAA
1 TTACCCGAA
*
34988475 TTAACCGAA
1 TTACCCGAA
**
34988484 TTAATCGAA
1 TTACCCGAA
*
34988493 TTAACCGAA
1 TTACCCGAA
*
34988502 TTACCCAAA
1 TTACCCGAA
34988511 TTACCCGAA
1 TTACCCGAA
34988520 TTA
1 TTA
34988523 TATTAATCGA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (9 bp):
TTACCCGAA
Found at i:34988485 original size:18 final size:18
Alignment explanation
Indices: 34988462--34988522 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
34988452 AAAACTTACT
34988462 CGAATTACCCGAATTAAC
1 CGAATTACCCGAATTAAC
**
34988480 CGAATTAATCGAATTAAC
1 CGAATTACCCGAATTAAC
* *
34988498 CGAATTACCCAAATTACC
1 CGAATTACCCGAATTAAC
34988516 CGAATTA
1 CGAATTA
34988523 TATTAATCGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.41, C:0.25, G:0.10, T:0.25
Consensus pattern (18 bp):
CGAATTACCCGAATTAAC
Found at i:34988608 original size:21 final size:21
Alignment explanation
Indices: 34988584--34988625 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
34988574 AATTAACACA
34988584 TAAATTATTTGTAATTTTTAT
1 TAAATTATTTGTAATTTTTAT
34988605 TAAATTATTTGTAATTTTTAT
1 TAAATTATTTGTAATTTTTAT
34988626 GATTGGGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
TAAATTATTTGTAATTTTTAT
Found at i:34992006 original size:13 final size:13
Alignment explanation
Indices: 34991985--34992014 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
34991975 CATGAGGATG
*
34991985 AAATGCAGTGCTA
1 AAATACAGTGCTA
34991998 AAATACAGTGCTA
1 AAATACAGTGCTA
34992011 AAAT
1 AAAT
34992015 GCAACCGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (13 bp):
AAATACAGTGCTA
Found at i:34993817 original size:40 final size:40
Alignment explanation
Indices: 34993773--34993853 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
34993763 TGTTAACTCT
34993773 TGCAACTGAGCTTTCCACTCTTTCAACTCTGTAGGAGTCA
1 TGCAACTGAGCTTTCCACTCTTTCAACTCTGTAGGAGTCA
34993813 TGCAACTGAGCTTTCCACTCTTTCAACTCTGTAGGAGTCA
1 TGCAACTGAGCTTTCCACTCTTTCAACTCTGTAGGAGTCA
34993853 T
1 T
34993854 TCTGTATGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.33
Consensus pattern (40 bp):
TGCAACTGAGCTTTCCACTCTTTCAACTCTGTAGGAGTCA
Found at i:34999031 original size:20 final size:20
Alignment explanation
Indices: 34999006--34999048 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
34998996 ATAACTTAAA
34999006 AATGGTATATTTACCATTTG
1 AATGGTATATTTACCATTTG
34999026 AATGGTATATTTACCATTTG
1 AATGGTATATTTACCATTTG
34999046 AAT
1 AAT
34999049 CCCTTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (20 bp):
AATGGTATATTTACCATTTG
Found at i:35008212 original size:22 final size:24
Alignment explanation
Indices: 35008187--35008239 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 24
35008177 GTTGAATTGG
*
35008187 TTTAATTAAATTTTTAA-AATTT-
1 TTTAATTAAAATTTTAATAATTTA
*
35008209 TTTAA-TAAAATTTTAATTATTTA
1 TTTAATTAAAATTTTAATAATTTA
35008232 TTTAATTA
1 TTTAATTA
35008240 TTGTTGGTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 10 0.38
22 9 0.35
23 5 0.19
24 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTAATTAAAATTTTAATAATTTA
Found at i:35016577 original size:18 final size:18
Alignment explanation
Indices: 35016550--35016584 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35016540 AGTTTTACAA
*
35016550 ATTTTTAAAATTCTTATG
1 ATTTTCAAAATTCTTATG
*
35016568 ATTTTCAAAATTTTTAT
1 ATTTTCAAAATTCTTAT
35016585 TTTTTAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTTTCAAAATTCTTATG
Found at i:35016668 original size:20 final size:20
Alignment explanation
Indices: 35016631--35016694 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
35016621 ATTTTTTATA
* * *
35016631 TTTTAAAATTATTATAATTT
1 TTTTACAATTTTTATAATAT
*
35016651 TTTTACAATTTTTGTAATAT
1 TTTTACAATTTTTATAATAT
* *
35016671 TTTAACAATTTTT-TAAAAT
1 TTTTACAATTTTTATAATAT
35016690 TTTTA
1 TTTTA
35016695 ACAGCTTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 9 0.24
20 28 0.76
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTTACAATTTTTATAATAT
Found at i:35022008 original size:25 final size:26
Alignment explanation
Indices: 35021974--35022035 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
35021964 AATGAATTTC
*
35021974 TCAAAATTTTAAC-AGGGTAAAATCG
1 TCAAAATTTTAACGAGGGTAAAACCG
* *
35021999 TCAAAATTTTACCGAGGGTAAGACCG
1 TCAAAATTTTAACGAGGGTAAAACCG
35022025 TCAAAATTTTA
1 TCAAAATTTTA
35022036 TCAAATGGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 12 0.36
26 21 0.64
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (26 bp):
TCAAAATTTTAACGAGGGTAAAACCG
Found at i:35025217 original size:63 final size:63
Alignment explanation
Indices: 35025145--35025304 Score: 295
Period size: 63 Copynumber: 2.5 Consensus size: 63
35025135 AGATAATTTT
35025145 AAAGAGTTTTATTAGGATTCAATTACTCTT-TAAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTGT-AAGAGTTTTTATTAGGATTCAATTACTCTTG
35025208 AAAGAGTTTTATTAGGATTCAATTACTCTTGTAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTGTAAGAGTTTTTATTAGGATTCAATTACTCTTG
*
35025271 AAATAGTTTTATTAGGATTCAATTACTCTTGTAA
1 AAAGAGTTTTATTAGGATTCAATTACTCTTGTAA
35025305 TTTGCCTATA
Statistics
Matches: 95, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
63 94 0.99
64 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.44
Consensus pattern (63 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTGTAAGAGTTTTTATTAGGATTCAATTACTCTTG
Found at i:35025301 original size:31 final size:31
Alignment explanation
Indices: 35025145--35025301 Score: 269
Period size: 31 Copynumber: 5.0 Consensus size: 31
35025135 AGATAATTTT
*
35025145 AAAGAGTTTTATTAGGATTCAATTACTCTTT
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
35025176 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
35025208 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
*
35025239 TAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
*
35025271 AAATAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
35025302 TAATTTGCCT
Statistics
Matches: 120, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
31 61 0.51
32 59 0.49
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.45
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Done.