Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48574783
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2023350 characters in sequence are not A, C, G, or T
File 98 of 135
Found at i:36445450 original size:24 final size:24
Alignment explanation
Indices: 36445419--36445466 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36445409 TGAGACAAAC
36445419 AAAAATGACTATTTTAATGTTTTA
1 AAAAATGACTATTTTAATGTTTTA
36445443 AAAAATGACTATTTTAATGTTTTA
1 AAAAATGACTATTTTAATGTTTTA
36445467 CCTTGTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (24 bp):
AAAAATGACTATTTTAATGTTTTA
Found at i:36447682 original size:17 final size:18
Alignment explanation
Indices: 36447652--36447696 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
36447642 AATAGTCTCT
* *
36447652 TATTTTTTTCCTAAATTC
1 TATTTTTATCCTAAATTA
36447670 TATTTTTAT-CTAAATTA
1 TATTTTTATCCTAAATTA
36447687 TACTTTTTAT
1 TA-TTTTTAT
36447697 TAGTATTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTATCCTAAATTA
Found at i:36450995 original size:20 final size:21
Alignment explanation
Indices: 36450963--36451001 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
36450953 TAATAAACAC
36450963 TAAAAAATCA-TTTAAAAAAA
1 TAAAAAATCATTTTAAAAAAA
36450983 TAAAAAAGT-ATTTTAAAAA
1 TAAAAAA-TCATTTTAAAAA
36451002 TATTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
TAAAAAATCATTTTAAAAAAA
Found at i:36451029 original size:17 final size:17
Alignment explanation
Indices: 36450995--36451027 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
36450985 AAAAAGTATT
*
36450995 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
36451012 TTAAAAA-ATTTAAAAA
1 TTAAAAATATTTAAAAA
36451028 ATATATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:36452728 original size:20 final size:19
Alignment explanation
Indices: 36452703--36452751 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
36452693 TATTTTTAAA
*
36452703 AATATTTTAACATAGTTTTT
1 AATATTTTAACATA-ATTTT
*
36452723 AATATTTATAATATAATTTT
1 AATATTT-TAACATAATTTT
*
36452743 AATAATTTA
1 AATATTTTA
36452752 TGCTTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 17 0.68
21 6 0.24
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
AATATTTTAACATAATTTT
Found at i:36459849 original size:3 final size:3
Alignment explanation
Indices: 36459841--36459871 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
36459831 CAGTTTTGAG
*
36459841 TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
36459872 TTATATTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:36460567 original size:21 final size:21
Alignment explanation
Indices: 36460543--36460613 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 21
36460533 TTAATATAAA
*
36460543 TTTAAATTTATTATTGTATTT
1 TTTAAAATTATTATTGTATTT
*
36460564 TTTAAAAATATTCA-TGTA-TT
1 TTTAAAATTATT-ATTGTATTT
* * *
36460584 TTT-ATATT-TTTTTGAATTT
1 TTTAAAATTATTATTGTATTT
36460603 TTTAAAATTAT
1 TTTAAAATTAT
36460614 GATTAAATTG
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
18 5 0.13
19 8 0.21
20 9 0.24
21 15 0.39
22 1 0.03
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTAAAATTATTATTGTATTT
Found at i:36460575 original size:41 final size:39
Alignment explanation
Indices: 36460530--36460609 Score: 88
Period size: 41 Copynumber: 2.0 Consensus size: 39
36460520 TTATTAATAC
*
36460530 ATATTAATATAAATTTAAATTTATTATTGTATTTTTTAAAA
1 ATATTAATATAAATTTAAATTT-TT-TTGAATTTTTTAAAA
* * ** *
36460571 ATATTCATGTATTTTTATATTTTTTTGAATTTTTTAAAA
1 ATATTAATATAAATTTAAATTTTTTTGAATTTTTTAAAA
36460610 TTATGATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
39 14 0.42
40 2 0.06
41 17 0.52
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (39 bp):
ATATTAATATAAATTTAAATTTTTTTGAATTTTTTAAAA
Found at i:36460762 original size:14 final size:14
Alignment explanation
Indices: 36460743--36460772 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36460733 ATATAATGTG
36460743 AATGCTTAAATTAC
1 AATGCTTAAATTAC
36460757 AATGCTTAAATTAC
1 AATGCTTAAATTAC
36460771 AA
1 AA
36460773 ATTTCTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (14 bp):
AATGCTTAAATTAC
Found at i:36464121 original size:21 final size:21
Alignment explanation
Indices: 36464095--36464146 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
36464085 AGCGGTGGCG
*
36464095 GTGAGATTAGTTACTGTAGCA
1 GTGAGATTAGGTACTGTAGCA
* *
36464116 GTGAGATTGGGTACTGTAGCG
1 GTGAGATTAGGTACTGTAGCA
36464137 GTGAGATTAG
1 GTGAGATTAG
36464147 AAACAATGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.08, G:0.37, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGGTACTGTAGCA
Found at i:36467616 original size:21 final size:22
Alignment explanation
Indices: 36467579--36467619 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
36467569 AAATAGGGAG
*
36467579 AAAACAACATGAAAATAGCATT
1 AAAACAACATAAAAATAGCATT
36467601 AAAACAACA-AAAAATAGCA
1 AAAACAACATAAAAATAGCA
36467620 GATTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.66, C:0.15, G:0.07, T:0.12
Consensus pattern (22 bp):
AAAACAACATAAAAATAGCATT
Found at i:36473560 original size:38 final size:39
Alignment explanation
Indices: 36473487--36473561 Score: 100
Period size: 38 Copynumber: 1.9 Consensus size: 39
36473477 ATATAATTCT
* *
36473487 TATTATTTATTTTGGGTTTTGTTGAATGATGGATTGTTA
1 TATTATTTATTTTAGGTTTTGTTGAATGATAGATTGTTA
*
36473526 TATTGTTTATTTTAGG-TTTGTTGAA-GTATAGATTGT
1 TATTATTTATTTTAGGTTTTGTTGAATG-ATAGATTGT
36473562 ATTTTTGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 1 0.03
38 17 0.53
39 14 0.44
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.56
Consensus pattern (39 bp):
TATTATTTATTTTAGGTTTTGTTGAATGATAGATTGTTA
Found at i:36478109 original size:15 final size:15
Alignment explanation
Indices: 36478085--36478114 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36478075 GGGTTAACTT
36478085 CCTTTCTATAAACCA
1 CCTTTCTATAAACCA
*
36478100 CCTTTGTATAAACCA
1 CCTTTCTATAAACCA
36478115 ATCACAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.33
Consensus pattern (15 bp):
CCTTTCTATAAACCA
Found at i:36479586 original size:49 final size:49
Alignment explanation
Indices: 36479529--36479632 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
36479519 TCATGTGTTA
* *
36479529 TAATTTTATAAAGTGTTGAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTGACCTTTTGATTCATGATATTAAACTTAATTT
* *
36479578 TAATTTTATAAAGTGTTTACCTTTTGATTCGTGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTGACCTTTTGATTCATGATATTAAACTTAATTT
36479627 TAATTT
1 TAATTT
36479633 GTTTTTTTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.51
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTGACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:36481179 original size:45 final size:44
Alignment explanation
Indices: 36481090--36481182 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
36481080 ATTACAACAT
* * *
36481090 CATTTCATTCAACCAAACACAAGAATACTATTATAGTTATATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGCTATATTC
* *
36481134 CATTCCATTCAACCAAACA-ATTGAATTACTATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTACAGCTATATTC
36481179 CATT
1 CATT
36481183 ACAGCGAACC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.50
45 20 0.48
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGCTATATTC
Found at i:36483854 original size:18 final size:18
Alignment explanation
Indices: 36483833--36483882 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
36483823 TCGTTCATGT
*
36483833 CCACGTCCTCGACCGTGA
1 CCACGTCCTCGACCGCGA
* * *
36483851 CCACGACCACGACCGCGG
1 CCACGTCCTCGACCGCGA
*
36483869 CCATGTCCTCGACC
1 CCACGTCCTCGACC
36483883 ACAACTACTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.18, C:0.48, G:0.22, T:0.12
Consensus pattern (18 bp):
CCACGTCCTCGACCGCGA
Found at i:36485067 original size:24 final size:25
Alignment explanation
Indices: 36485033--36485085 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
36485023 ATAGGAAAGT
* *
36485033 GGTTACAAGAAGATGAAAGGTTAAA
1 GGTTACAAGAAGATGAAAAGTGAAA
36485058 GGTTA-AAGAAGATGAAAAGTGAAA
1 GGTTACAAGAAGATGAAAAGTGAAA
36485082 GGTT
1 GGTT
36485086 GAACATCCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.47, C:0.02, G:0.30, T:0.21
Consensus pattern (25 bp):
GGTTACAAGAAGATGAAAAGTGAAA
Found at i:36490571 original size:31 final size:29
Alignment explanation
Indices: 36490498--36490571 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
36490488 GGCTCAGATT
*
36490498 ACATTTTAGTCACTTATGTTTAAAATGTT
1 ACATTTTAGTCACTTATGTTTAAAATGTA
* * ***
36490527 ACGTTTTAATCACTTATGTTATCACGTTGTA
1 ACATTTTAGTCACTTATGTT-T-AAAATGTA
36490558 ACATTTTAGTCACT
1 ACATTTTAGTCACT
36490572 GAGCCGTTAG
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 18 0.51
30 1 0.03
31 16 0.46
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTAAAATGTA
Found at i:36497981 original size:20 final size:19
Alignment explanation
Indices: 36497956--36497995 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
36497946 TTCAAATAAT
*
36497956 TTAATTTGATATAATAAAAA
1 TTAATTTGAAAT-ATAAAAA
*
36497976 TTAATTTTAAATATAAAAA
1 TTAATTTGAAATATAAAAA
36497995 T
1 T
36497996 CTTGTACGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TTAATTTGAAATATAAAAA
Found at i:36499320 original size:8 final size:8
Alignment explanation
Indices: 36499307--36499341 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
36499297 AATATAAAGA
36499307 AAAATAAT
1 AAAATAAT
36499315 AAAATAAT
1 AAAATAAT
36499323 AAAATAAT
1 AAAATAAT
36499331 AATAATAAT
1 AA-AATAAT
36499340 AA
1 AA
36499342 CAGGACTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AAAATAAT
Found at i:36499323 original size:3 final size:3
Alignment explanation
Indices: 36499309--36499341 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
36499299 TATAAAGAAA
36499309 AAT AAT AA- AAT AAT AA- AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
36499342 CAGGACTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:36499331 original size:11 final size:12
Alignment explanation
Indices: 36499309--36499341 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
36499299 TATAAAGAAA
36499309 AATAATAA-AAT
1 AATAATAATAAT
36499320 AATAA-AATAAT
1 AATAATAATAAT
36499331 AATAATAATAA
1 AATAATAATAA
36499342 CAGGACTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 2 0.10
11 13 0.65
12 5 0.25
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAATAATAAT
Found at i:36500802 original size:44 final size:44
Alignment explanation
Indices: 36500754--36500859 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 44
36500744 CTTCTTCGCA
* **
36500754 GCAACTTCAGGGGGA-AGAGA-TTCGTGGTTTTAGTCTGCTCCACT
1 GCAACTTCAGGGAGATA-AGACTT-GTGGTTTTAACCTGCTCCACT
* * *
36500798 GCAACGTCAAGGAGATAAGACTTGTTGTTTTAACCTGCTCCACT
1 GCAACTTCAGGGAGATAAGACTTGTGGTTTTAACCTGCTCCACT
*
36500842 GCGACTTCAGGGAGATAA
1 GCAACTTCAGGGAGATAA
36500860 TGTTTGATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
44 48 0.94
45 3 0.06
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (44 bp):
GCAACTTCAGGGAGATAAGACTTGTGGTTTTAACCTGCTCCACT
Found at i:36501648 original size:132 final size:132
Alignment explanation
Indices: 36500943--36502468 Score: 2162
Period size: 132 Copynumber: 11.6 Consensus size: 132
36500933 TGTAACTTTA
* **
36500943 GGGAA-ATAAAATTCGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* *
36501007 TTCAACATACTCCACTGCTGCTCAGGGAGATAAGGA-TGGTGTC-TAAATCTGCTTCCCTACTAC
66 TTCAACCTACTCCACTGCTGCTCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACTAC
*
36501070 ATT
130 CTT
*
36501073 GGGGAA-ATAAGATTCGCCGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
1 -GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
* *
36501137 CTTCGACCTACTCCACTGCTGCTCAGGGAGATAGGATTGGTGGCTTAAATCTGCTTCCCTACTAC
65 CTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTAC
36501202 CTT
130 CTT
* * *
36501205 GGGGAAGATAAGATTCGCCGTCGTCGATCTGCTCCACTACTGTTTAGGGGGATAAGATCTACAAT
1 -GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
* * * *
36501270 TTTCAACCTACTCCACTGCTGCTCAGGGAAATAAGG-CTAGTGGCTTAAATATGCTTCCCTTACT
65 CTTCAACCTACTCCACTGCTGCTCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCC-TACT
*
36501334 ACATT
128 ACCTT
* * * * * * *
36501339 GGGAATATAAGATTCACCATCTTTGATCTGCTCCACTGCTGCTTAGGGAGATAAAATTTACAATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* * *
36501404 TTCAACCTACTCCACTGCTACTCAGGGAGATAAGG-CTAGTAGCTTAAATCTGC-T---TACTAC
66 TTCAACCTACTCCACTGCTGCTCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACTAC
36501464 CTT
130 CTT
* * * *
36501467 AGGGAAGATAAGATTCACCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGACAGGATCTACAAT
1 -GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
* *
36501532 CTTCAACCTACTCCACTGCTGCTCAGAGAGATAGGACTGGTGGCTTAAATCTACTTCCCTACTAC
65 CTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTAC
36501597 CTT
130 CTT
* *
36501600 GGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCATTACTGCTTAGGGAGATAAGATCTACAATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* * * * * *
36501665 TTCGACCTACTCCATTACTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGTTTCCCTACAACC
66 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
36501730 TT
131 TT
* * * *
36501732 AGGAATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGAAGATAGGATCTACAATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* *
36501797 TTCAACTTACTCCACTGCTGCTCAGGGAGATAGGACCGGTGGCTTAAATCTGCTTCCCTACTACC
66 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
36501862 TT
131 TT
* *
36501864 GGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATA
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* * * *
36501929 TTCGACCTACTCCACTACTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGTTTCCCTA-TAAC
66 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACT-AC
36501993 CTT
130 CTT
* * * *
36501996 GGGAAGATAAGATTCGCCGTCTCCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATATACCATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* * * **
36502061 TTCAACCTACTCCATTGCTGCTCAGGGAGATAGGACTGATGGCTTAAATATGCTT-CCTACTATA
66 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
*
36502125 TC
131 TT
* *
36502127 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* * *
36502192 TTCAACCTACTCCATTGCTGCTCAGGGAGATAGGACTGATGGCTTAAATCTGCTT-CCTACTATC
66 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
*
36502256 TC
131 TT
* *
36502258 GGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
* * *
36502323 TTCAACCTACTCCACTGCTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTACTT-CCTACTATC
66 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
*
36502387 TC
131 TT
* * * * *
36502389 GGGAAGATAAGATTCGCTGTCTTCAATCTGTTCCACTACTGCTTAGGGAGACAAGATCTGCAATC
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
36502454 TTCAACCTACTCCAC
66 TTCAACCTACTCCAC
36502469 CATTGTTCAG
Statistics
Matches: 1258, Mismatches: 124, Indels: 26
0.89 0.09 0.02
Matches are distributed among these distances:
128 11 0.01
129 100 0.08
130 5 0.00
131 425 0.34
132 491 0.39
133 215 0.17
134 11 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (132 bp):
GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATC
TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
TT
Found at i:36502445 original size:44 final size:44
Alignment explanation
Indices: 36500940--36502445 Score: 405
Period size: 44 Copynumber: 34.3 Consensus size: 44
36500930 CAATGTAACT
* * * *
36500940 TTAGGGAAATAAAATTCGCTATCTTCGATCTGCTCCACTACTGC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* ** * *
36500984 TTAGGGAGATAAGA-TCTACAATCTTCAA-CATACTCCACTGCTGC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATC-TGCTCCACTACTGC
* * * *
36501028 TCAGGGAGATAAGGA-T-GGTGTC-TAAATCTGCTTCC-CTACTAC
1 TTAGGGAGATAA-GATTCGCTGTCTTCAATCTGC-TCCACTACTGC
* * * * *
36501070 ATTGGGGAAATAAGATTCGCCGTTTTCGATCTGCTCCACTACTGC
1 -TTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* ** * * * *
36501115 TTAGGGAGATAAGA-TCTACAATCTTCGACCTACTCCACTGCTGC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATCTGCTCCACTACTGC
* * * * * *
36501159 TCAGGGAGATAGGATT-GGTGGCTTAAATCTGCTTCC-CTACTACC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCCACTACT-GC
* * * * *
36501203 TTGGGGAAGATAAGATTCGCCGTCGTCGATCTGCTCCACTACTGT
1 TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* ** * * *
36501248 TTAGGGGGATAAGATCTACAAT-T-TTCAACCTACTCCACTGCTGC
1 TTAGGGAGATAAGAT-T-CGCTGTCTTCAATCTGCTCCACTACTGC
* * ** * * * * *
36501292 TCAGGGAAATAAGGCTAG-TGGCTTAAATATGCTTCC-CTTACTAC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCCAC-TACTGC
* * ** ** *
36501336 ATT-GGGAATATAAGATTCACCATCTTTGATCTGCTCCACTGCTGC
1 -TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* ** ** * * * *
36501381 TTAGGGAGATAAAATTTACAATCTTCAACCTACTCCACTGCTAC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* ** * * *
36501425 TCAGGGAGATAAGGCTAG-TAG-CTTAAATCTGCT-TACTAC--C
1 TTAGGGAGATAAGATTCGCT-GTCTTCAATCTGCTCCACTACTGC
* * * *
36501465 TTAGGGAAGATAAGATTCACCGTCTTCGATTTGCTCCACTACTGC
1 TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* * * ** * * *
36501510 TTAGGGAGACAGGA-TCTACAATCTTCAACCTACTCCACTGCTGC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATCTGCTCCACTACTGC
* * * * * * * * *
36501554 TCAGAGAGATAGGACT-GGTGGCTTAAATCTACTTCC-CTACTACC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCCACTACT-GC
* ** *
36501598 TT-GGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCATTACTGC
1 TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* ** * * * * *
36501642 TTAGGGAGATAAGA-TCTACAATCTTCGACCTACTCCATTACTAC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATCTGCTCCACTACTGC
* * * * * * * **
36501686 TCAGGGAGATAGGACT-GGTGGCTTAAATCTGTTTCC-CTACAACC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTG-CTCCACTAC-TGC
* * * *
36501730 TTAGGAATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* * * ** * *
36501774 TTAGGAAGATAGGA-TCTACAATCTTCAA-CTTACTCCACTGCTGC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATC-TGCTCCACTACTGC
* * * * * * *
36501818 TCAGGGAGATAGGA-CCGGTGGCTTAAATCTGCTTCC-CTACTACC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCCACTACT-GC
* **
36501862 TT-GGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGC
1 TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* ** * * * * *
36501906 TTAGGGAGATAAGA-TCTACAATATTCGACCTACTCCACTACTAC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATCTGCTCCACTACTGC
* * * * * * * *
36501950 TCAGGGAGATAGGACT-GGTGGCTTAAATCTGTTTCC-CTA-TAACC
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTG-CTCCACTACT--GC
* * *
36501994 TT-GGGAAGATAAGATTCGCCGTCTCCGATCTGCTCCACTACTGC
1 TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* * * * * *
36502038 TTAGGGAGAAAAGATATAC-C-ATCTTCAACCTACTCCATTGCTGC
1 TTAGGGAGATAAGAT-T-CGCTGTCTTCAATCTGCTCCACTACTGC
* * * * * * * * *
36502082 TCAGGGAGATAGGACT-GATGGCTTAAATATGCTTC-CTACT-A
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
* * * *
36502123 TATCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCTACTACTGC
1 T-TAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
** * * * *
36502169 TTAGGGAGATAAGA-TCTGCAATCTTCAACCTACTCCATTGCTGC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATCTGCTCCACTACTGC
* * * * * *
36502213 TCAGGGAGATAGGACT-GATGGCTTAAATCTGCTTCCTACTA-T-C
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCC-ACTACTGC
* * * *
36502256 -TCGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGC
1 TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
** * * *
36502300 TTAGGGAGATAAGA-TCTGCAATCTTCAACCTACTCCACTGCTGC
1 TTAGGGAGATAAGATTC-GCTGTCTTCAATCTGCTCCACTACTGC
* * * * * *
36502344 TTAGGGAGATAGGACT-GGTGGCTTAAATCTACTTCCTACTA-T-C
1 TTAGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCC-ACTACTGC
* *
36502387 -TCGGGAAGATAAGATTCGCTGTCTTCAATCTGTTCCACTACTGC
1 TTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
*
36502431 TTAGGGAGACAAGAT
1 TTAGGGAGATAAGAT
36502446 CTGCAATCTT
Statistics
Matches: 1016, Mismatches: 351, Indels: 190
0.65 0.23 0.12
Matches are distributed among these distances:
40 6 0.01
41 11 0.01
42 47 0.05
43 179 0.18
44 589 0.58
45 156 0.15
46 28 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
TTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGC
Found at i:36503189 original size:108 final size:108
Alignment explanation
Indices: 36502978--36503197 Score: 250
Period size: 108 Copynumber: 2.0 Consensus size: 108
36502968 AAAAAACGCT
* * * *
36502978 TGAAAAAGATTATCAAAATGGACAAGATGAAATTTTGTTGAGAACAAAGCTCTAAATAAATGAAT
1 TGAAAAAGATTATCAAAATGGACAACATGAAATATTATTGAGAACAAAGCTCAAAATAAATGAAT
* *
36503043 CAATCAAGATAGTAAACTTTGCAAAGATACAAACTGAATAAAA
66 CAATCAAGATAGCAAACTTTGCAAAGATACAAAATGAATAAAA
* * * *
36503086 TGAAACAA-ATTATCACAATGGATAACATGAAATATTATTGAGAACAAAGGTCAAAATGAA-GAA
1 TGAAA-AAGATTATCAAAATGGACAACATGAAATATTATTGAGAACAAAGCTCAAAATAAATG-A
* * * *
36503149 ATTAATCAAGATAGCAAATTTTG-ATAATATA-AGAAATGAATAAGA
64 ATCAATCAAGATAGCAAACTTTGCA-AAGATACA-AAATGAATAAAA
36503194 TGAA
1 TGAA
36503198 GACAGGTGCC
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
107 3 0.03
108 89 0.95
109 2 0.02
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.25
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAACATGAAATATTATTGAGAACAAAGCTCAAAATAAATGAAT
CAATCAAGATAGCAAACTTTGCAAAGATACAAAATGAATAAAA
Found at i:36512803 original size:29 final size:30
Alignment explanation
Indices: 36512744--36512801 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
36512734 TCCGGGCCTT
*
36512744 GGGGCAAAAATGTAATTATTCAAAAGTTTA
1 GGGGCAAAAATGTAATTATTAAAAAGTTTA
36512774 GGGGC-AAAATCGTAATT-TTGAAAAAGTT
1 GGGGCAAAAAT-GTAATTATT-AAAAAGTT
36512802 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATTAAAAAGTTTA
Found at i:36513092 original size:37 final size:37
Alignment explanation
Indices: 36513023--36513095 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
36513013 TTATGTATTT
*
36513023 ATTTTATGAATTTATTTAATGTTGACTTAAGTATGAG
1 ATTTTATGAATTTATTTAATGTTGACTCAAGTATGAG
36513060 ATTTTATGAATTTATTTAATGTTGA-TCCAAGTATGA
1 ATTTTATGAATTTATTTAATGTTGACT-CAAGTATGA
36513096 AATGATAGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 1 0.03
37 33 0.97
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (37 bp):
ATTTTATGAATTTATTTAATGTTGACTCAAGTATGAG
Found at i:36513236 original size:50 final size:50
Alignment explanation
Indices: 36513171--36513325 Score: 202
Period size: 50 Copynumber: 3.1 Consensus size: 50
36513161 ATGACATTTG
* *
36513171 GGCACCAAGACGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTT
1 GGCACCAAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATT
* * * * *
36513221 GGCACCGAGATGAGAGGTCCCCTATAAGACCATATCTGGGACATGGCATG
1 GGCACCAAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATT
* ** *
36513271 GGCACCAACATGAGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTT
1 GGCACCAAGATGAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATT
36513322 GGCA
1 GGCA
36513326 TGTTATTATC
Statistics
Matches: 88, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 55 0.62
51 33 0.38
ACGTcount: A:0.28, C:0.25, G:0.29, T:0.19
Consensus pattern (50 bp):
GGCACCAAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATT
Found at i:36516544 original size:12 final size:11
Alignment explanation
Indices: 36516520--36516571 Score: 65
Period size: 10 Copynumber: 4.9 Consensus size: 11
36516510 CTTCTTTTAT
*
36516520 TTTATTTTAT-
1 TTTATTTTTTC
36516530 TTTATTTTTTC
1 TTTATTTTTTC
36516541 TTTTATTTTTTC
1 -TTTATTTTTTC
36516553 -TT-TTTTTTC
1 TTTATTTTTTC
36516562 TTTATTTTTT
1 TTTATTTTTT
36516572 TTAACATTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
9 7 0.19
10 13 0.35
11 6 0.16
12 11 0.30
ACGTcount: A:0.10, C:0.06, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTATTTTTTC
Found at i:36516572 original size:12 final size:11
Alignment explanation
Indices: 36516499--36516572 Score: 55
Period size: 12 Copynumber: 6.5 Consensus size: 11
36516489 TGGCCTCTCA
36516499 TTTTTCTTTTT
1 TTTTTCTTTTT
36516510 CTTCTTT-TATTTT
1 -TT-TTTCT-TTTT
* *
36516523 ATTTTATTTTAT
1 TTTTTCTTTT-T
36516535 TTTTTCTTTTAT
1 TTTTTCTTTT-T
36516547 TTTTTC--TTT
1 TTTTTCTTTTT
36516556 TTTTTCTTTATT
1 TTTTTCTTT-TT
36516568 TTTTT
1 TTTTT
36516573 TAACATTCTT
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
9 7 0.13
10 2 0.04
11 7 0.13
12 29 0.56
13 7 0.13
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:36519511 original size:15 final size:16
Alignment explanation
Indices: 36519491--36519523 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
36519481 TGGCTGCACG
36519491 GAGATG-AAATTTCAC
1 GAGATGAAAATTTCAC
36519506 GAGATGAAAATTTCAC
1 GAGATGAAAATTTCAC
36519522 GA
1 GA
36519524 AGACATAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.24
Consensus pattern (16 bp):
GAGATGAAAATTTCAC
Found at i:36521453 original size:3 final size:3
Alignment explanation
Indices: 36521445--36521478 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
36521435 GATAGAAGTA
*
36521445 AAT AAT AAT AAT AAT AAT ACT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
36521479 GGCCTGTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36539203 original size:5 final size:5
Alignment explanation
Indices: 36539193--36539218 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
36539183 TGTTTGGAGT
36539193 GAAGA GAAGA GAAGA GAAGA GAAGA G
1 GAAGA GAAGA GAAGA GAAGA GAAGA G
36539219 TGAGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (5 bp):
GAAGA
Found at i:36548654 original size:5 final size:5
Alignment explanation
Indices: 36548644--36548669 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
36548634 TGAGCATTCG
36548644 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
36548670 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:36548767 original size:5 final size:5
Alignment explanation
Indices: 36548759--36548784 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
36548749 GAGATGGAAT
36548759 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
36548785 NNNNNNNNNN
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:36548784 original size:26 final size:26
Alignment explanation
Indices: 36548733--36548784 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
36548723 TGAAGTTTTC
* * *
36548733 TCGAATCGAGTCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
36548759 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
36548785 NNNNNNNNNN
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:36549608 original size:9 final size:9
Alignment explanation
Indices: 36549594--36549624 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
36549584 TCGAGTTGAT
36549594 TCGAATAAC
1 TCGAATAAC
36549603 TCGAATAAC
1 TCGAATAAC
36549612 TCGAATAAC
1 TCGAATAAC
36549621 TCGA
1 TCGA
36549625 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (9 bp):
TCGAATAAC
Found at i:36550119 original size:85 final size:85
Alignment explanation
Indices: 36550019--36550255 Score: 298
Period size: 85 Copynumber: 2.8 Consensus size: 85
36550009 CACTTACAGA
** * *
36550019 AAAAAACGTTGCTAAAGGTCATGTTCTTTAGCGGTGCTTAGGAAAAAAACGCCGCT-AATGATCA
1 AAAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTAGGAAAAAAACGCCGCTAAAAG-TAA
*
36550083 TGTTCTTTAGCGGCGCTTGGG
65 TGTTCTATAGCGGCGCTTGGG
* *
36550104 AAAAAACGCCGCTAAAGATCATATTCTTTAGCGGTGCTTAGGAAAAAAACGCCGCTAAAAGTAAT
1 AAAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTAGGAAAAAAACGCCGCTAAAAGTAAT
*
36550169 GTTCTATAGCGGCGCTTGGT
66 GTTCTATAGCGGCGCTTGGG
* * * * * * * * *
36550189 AAAAGACACCGCTAAAAGTAATGTTCTATAGCAGCGCTT-GGTAGAAAACGCCGCTAAAAGTAAT
1 AAAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTAGGAAAAAAACGCCGCTAAAAGTAAT
36550253 GTT
66 GTT
36550256 TGAAGCGCCG
Statistics
Matches: 132, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
84 26 0.20
85 103 0.78
86 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (85 bp):
AAAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTAGGAAAAAAACGCCGCTAAAAGTAAT
GTTCTATAGCGGCGCTTGGG
Found at i:36550124 original size:42 final size:42
Alignment explanation
Indices: 36550017--36550246 Score: 248
Period size: 42 Copynumber: 5.4 Consensus size: 42
36550007 GGCACTTACA
** * *
36550017 GAAAAAAACGTTGCTAAAGGTCATGTTCTTTAGCGGTGCTTAG
1 GAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-G
*
36550060 GAAAAAAACGCCGCTAATGATCATGTTCTTTAGCGGCGCTTG
1 GAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTG
* * *
36550102 GGAAAAAACGCCGCTAAAGATCATATTCTTTAGCGGTGCTTAG
1 GAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-G
* *
36550145 GAAAAAAACGCCGCTAAA-AGTAATGTTCTATAGCGGCGCTTG
1 GAAAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTG
* * * * * *
36550187 GTAAAAGACACCGCTAAA-AGTAATGTTCTATAGCAGCGCTTG
1 GAAAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTG
* *
36550229 GTAGAAAACGCCGCTAAA
1 GAAAAAAACGCCGCTAAA
36550247 AGTAATGTTT
Statistics
Matches: 164, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 93 0.57
43 71 0.43
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (42 bp):
GAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTG
Found at i:36562126 original size:113 final size:112
Alignment explanation
Indices: 36561945--36562294 Score: 434
Period size: 113 Copynumber: 3.1 Consensus size: 112
36561935 TTCCCACAAC
* * *
36561945 GCGCCGCTAATAATATGTTTTAGCGGCGTTTTACCATAAGCGCCAC-AACTGCTAATATACATCA
1 GCGCCGCTAATACTATGATTTAGCGGCGTTTTA-AATAAGCGCCACTAA-TGCTAATATACATCA
*
36562009 AGACCAAAGCGCTGCATTTTGGTTAATATTTTGCGGCGCTTTACAATAA
64 AGACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAA
* * * *
36562058 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCCTAATGTACCTCAA
1 GCGCCGCTAATACTATGATTTAGCGGCGTTTT-AAATAAGCGCCACTAATGCTAATATACATCAA
* * * * * *
36562123 GACCAAA-CACTGCGTTTTGGTTAAGAAATATTGCGGCGCTTTTCACTAC
65 GACCAAAGCGCTGCGTTTTGGTT-A-ATATTTTGCGGCGCTTTACAATAA
* * * *
36562172 TCGCCTCTAATACTATGATTTAGCGGCGTTTTAATATAAGCGTCACTAATGCTACTATACATCAA
1 GCGCCGCTAATACTATGATTTAGCGGCGTTTTAA-ATAAGCGCCACTAATGCTAATATACATCAA
* * *
36562237 GACCAAAGCGCTGCGTTTTGGTTAATCTTTTGCGGCGTTTTCCAATAA
65 GACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAA
*
36562285 GCGCCACTAA
1 GCGCCGCTAA
36562295 GCCTAATATA
Statistics
Matches: 200, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
112 13 0.06
113 89 0.44
114 84 0.42
115 14 0.07
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (112 bp):
GCGCCGCTAATACTATGATTTAGCGGCGTTTTAAATAAGCGCCACTAATGCTAATATACATCAAG
ACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGCTTTACAATAA
Found at i:36562202 original size:114 final size:113
Alignment explanation
Indices: 36561928--36562261 Score: 413
Period size: 114 Copynumber: 2.9 Consensus size: 113
36561918 TAATAATCTA
** * * * *
36561928 GCGGCGCTTCCCACAACGCGCCGCTAATAATATGTTTTAGCGGCGTTTTACCATAAGCGCCAC-A
1 GCGGCGCTTTACACTACGCGCCGCTAATACTATGATTTAGCGGCGTTTTA-AATAAGCGCCACTA
* * *
36561992 ACTGCTAATATACATCAAGACCAAAGCGCTGCATTTTGGTT-AATATTTT
65 A-TGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAAAATATT
* * *
36562041 GCGGCGCTTTACAATAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTA
1 GCGGCGCTTTACACTACGCGCCGCTAATACTATGATTTAGCGGCGTTTT-AAATAAGCGCCACTA
* * * *
36562106 ATCCTAATGTACCTCAAGACCAAA-CACTGCGTTTTGGTTAAGAAATATT
65 ATGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAA-AAATATT
* * * *
36562155 GCGGCGCTTTTCACTACTCGCCTCTAATACTATGATTTAGCGGCGTTTTAATATAAGCGTCACTA
1 GCGGCGCTTTACACTACGCGCCGCTAATACTATGATTTAGCGGCGTTTTAA-ATAAGCGCCACTA
*
36562220 ATGCTACTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAA
65 ATGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAA
36562262 TCTTTTGCGG
Statistics
Matches: 188, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
112 13 0.07
113 76 0.40
114 83 0.44
115 16 0.09
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (113 bp):
GCGGCGCTTTACACTACGCGCCGCTAATACTATGATTTAGCGGCGTTTTAAATAAGCGCCACTAA
TGCTAATATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAAAATATT
Found at i:36562315 original size:74 final size:73
Alignment explanation
Indices: 36562194--36562334 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 73
36562184 CTATGATTTA
* * *
36562194 GCGGCGTTTTAATATAAGCGTCACTAATGCTACTATACATCAAGACCAAAGCGCTGCGTTTTGGT
1 GCGGCGTTTTAATATAAGCGCCACTAATGCTAATATACAGCAAGACCAAA-CGCTGCGTTTTGGT
36562259 TAATCTTTT
65 TAATCTTTT
* * * *
36562268 GCGGCGTTTTCCA-ATAAGCGCCACTAA-GCCTAATATACCGCAAGACCAAACTCTGTGTTTTGG
1 GCGGCGTTTT-AATATAAGCGCCACTAATG-CTAATATACAGCAAGACCAAACGCTGCGTTTTGG
36562331 TTAA
64 TTAA
36562335 GAAATCTTGC
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
73 16 0.28
74 41 0.71
75 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (73 bp):
GCGGCGTTTTAATATAAGCGCCACTAATGCTAATATACAGCAAGACCAAACGCTGCGTTTTGGTT
AATCTTTT
Found at i:36562397 original size:188 final size:188
Alignment explanation
Indices: 36562075--36562482 Score: 654
Period size: 188 Copynumber: 2.2 Consensus size: 188
36562065 TAATACTATG
* * * * *
36562075 CTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACACTGCGTTT
1 CTTTTGCGGCGTTTTCCAATAAGCGCCACTAAGCCTAATATACCGCAAGACCAAACACTGCGTTT
36562140 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCTCTAATACTATGATTTAGCGGCGTTTTA
66 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCTCTAATACTATGATTTAGCGGCGTTTTA
* * *
36562205 ATATAAGCGTCACTAATGCTACTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAAT
131 ATATAAGCGCCACTAATGCTACTATACATCAAGACCAAAGCACTGCGCTTTGGTTAAT
* *
36562263 CTTTTGCGGCGTTTTCCAATAAGCGCCACTAAGCCTAATATACCGCAAGACCAAACTCTGTGTTT
1 CTTTTGCGGCGTTTTCCAATAAGCGCCACTAAGCCTAATATACCGCAAGACCAAACACTGCGTTT
*
36562328 TGGTTAAGAAATCTTGCGGCGCTTTTCACTACTCGCCTCTAATACTATGATTTAGCGGCGTTTTA
66 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCTCTAATACTATGATTTAGCGGCGTTTTA
* * *
36562393 ATATAAGCGCCACTACTGCTAGTATACATCAAGACCAAAGCATTGCGCTTTGGTTAAT
131 ATATAAGCGCCACTAATGCTACTATACATCAAGACCAAAGCACTGCGCTTTGGTTAAT
* * * *
36562451 ATTTTGCGGCGCTTTACAATAAGCGCCTCTAA
1 CTTTTGCGGCGTTTTCCAATAAGCGCCACTAA
36562483 TACTATGCTT
Statistics
Matches: 202, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
188 202 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (188 bp):
CTTTTGCGGCGTTTTCCAATAAGCGCCACTAAGCCTAATATACCGCAAGACCAAACACTGCGTTT
TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCTCTAATACTATGATTTAGCGGCGTTTTA
ATATAAGCGCCACTAATGCTACTATACATCAAGACCAAAGCACTGCGCTTTGGTTAAT
Found at i:36562617 original size:114 final size:113
Alignment explanation
Indices: 36562263--36562794 Score: 561
Period size: 114 Copynumber: 4.6 Consensus size: 113
36562253 TTTGGTTAAT
* * * * *
36562263 CTTTTGCGGCGTTTTCCAATAAGCGCCACTAAGCCTAATATACCGCAAGACCAAACTCTGTGTTT
1 CTTTAGCGGCGTTTT-AAATAAGCGCCACTAATCCTAATATACCTCAAGACCAAACTCTGCGTTT
* *
36562328 TGGTTAAGAAATCTTGCGGCGCTTTTCACTACTCGCCTCTAATACTATG
65 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATG
* * * * * *
36562377 ATTTAGCGGCGTTTTAATATAAGCGCCACTACTGCTAGTATACATCAAGACCAAAGCAT-TGCGC
1 CTTTAGCGGCGTTTTAA-ATAAGCGCCACTAATCCTAATATACCTCAAGACCAAA-C-TCTGCGT
* * * * ** *
36562441 TTTGGTT-A-ATATTTTGCGGCGCTTTACAATAAGCGCCTCTAATACTATG
63 TTTGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATG
**
36562490 CTTTAGCGGCGTTTTCCGATAAGCGCCACTAATCCTAATATACCTCAAGACCAAACTCTGCGTTT
1 CTTTAGCGGCGTTTT-AAATAAGCGCCACTAATCCTAATATACCTCAAGACCAAACTCTGCGTTT
* *
36562555 TGGTTAAGAAATATTGCGGCGCTTTTCCCTACTCGCCGCTAATACTATT
65 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATG
** * * *
36562604 CTTTAGCGGCGTTTTTGTATAAGCGCCACTAATGCTAGTGTACCTCAAGACCAAACTCTGCGTTT
1 CTTTAGCGGCG-TTTTAAATAAGCGCCACTAATCCTAATATACCTCAAGACCAAACTCTGCGTTT
** ** ** *
36562669 TGGTTAAGATGTATTGCGGCGCTTTTTGCGGCTCGCCGCTAATTCTATG
65 TGGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATG
* * * *
36562718 CTTTAGCGGCGATTTTAAATAAGCGCCACGAAT--TATATAGTACACATCTAGTCCAAAACGCTG
1 CTTTAGCGGCG-TTTTAAATAAGCGCCACTAATCCTA-ATA-TAC-C-TCAAGACC-AAACTCTG
36562781 CGTTTTGGTTAAGA
60 CGTTTTGGTTAAGA
36562795 GCTTTTGCGA
Statistics
Matches: 349, Mismatches: 56, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
111 1 0.00
112 14 0.04
113 85 0.24
114 205 0.59
115 16 0.05
116 7 0.02
117 21 0.06
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (113 bp):
CTTTAGCGGCGTTTTAAATAAGCGCCACTAATCCTAATATACCTCAAGACCAAACTCTGCGTTTT
GGTTAAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATG
Found at i:36565929 original size:19 final size:19
Alignment explanation
Indices: 36565879--36565941 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
36565869 GAACAAAAAA
36565879 TTATAAAATAATCAAAATAAT
1 TTATAAAATAATCAAAAT--T
*
36565900 CT-TAAAA-AATCAAAATT
1 TTATAAAATAATCAAAATT
*
36565917 TTATAAAATAATCTTAAATT
1 TTATAAAATAATC-AAAATT
36565937 TTATA
1 TTATA
36565942 TAAAAAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 2 0.06
18 5 0.14
19 13 0.36
20 15 0.42
21 1 0.03
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (19 bp):
TTATAAAATAATCAAAATT
Found at i:36570472 original size:48 final size:48
Alignment explanation
Indices: 36570401--36570498 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
36570391 ACATTGTCAA
36570401 AATAACACACATCAACAAGGCATCAAAAGTACCAAGGTTACATCAACC
1 AATAACACACATCAACAAGGCATCAAAAGTACCAAGGTTACATCAACC
*
36570449 AATAACACACATCAACAAGGCATCCAAAGTACCAAGGTTACATCAACC
1 AATAACACACATCAACAAGGCATCAAAAGTACCAAGGTTACATCAACC
36570497 AA
1 AA
36570499 AATGACATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.48, C:0.28, G:0.10, T:0.14
Consensus pattern (48 bp):
AATAACACACATCAACAAGGCATCAAAAGTACCAAGGTTACATCAACC
Found at i:36573831 original size:33 final size:33
Alignment explanation
Indices: 36573794--36573951 Score: 124
Period size: 33 Copynumber: 4.7 Consensus size: 33
36573784 ACATTCGTAG
* *
36573794 TGTCATAACCCAATTATGGTCTTATCATCAGAA
1 TGTCATAGCCCAACTATGGTCTTATCATCAGAA
* *
36573827 TGTCATAGCCCAACTATGGTCTTAT-ATATAAATA
1 TGTCATAGCCCAACTATGGTCTTATCAT-CAGA-A
* * * * * *
36573861 CTGCCATGGTCCAACCATGGTCTTA-CGTTCATG-G
1 -TGTCATAGCCCAACTATGGTCTTATC-ATCA-GAA
* * **
36573895 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGTCATAGCCCAACTATGGTCTTATCATCAGAA
36573928 TGTCATAGCCCAACTATGGTCTTA
1 TGTCATAGCCCAACTATGGTCTTA
36573952 CATATAAACA
Statistics
Matches: 93, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
32 3 0.03
33 66 0.71
34 2 0.02
35 21 0.23
36 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (33 bp):
TGTCATAGCCCAACTATGGTCTTATCATCAGAA
Found at i:36573972 original size:101 final size:101
Alignment explanation
Indices: 36573797--36574021 Score: 387
Period size: 101 Copynumber: 2.2 Consensus size: 101
36573787 TTCGTAGTGT
* *
36573797 CATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAACTATGGTCTTATATATAAATAC
1 CATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAACTATGGTCTTACATATAAACAC
* *
36573862 TGCCATGGTCCAACCATGGTCTTACGTTCATGGTGC
66 TGCCATGGTCCAACCATGGTCTTACGTTCATAGTAC
*
36573898 CATAACCCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAACTATGGTCTTACATATAAACAC
1 CATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAACTATGGTCTTACATATAAACAC
* *
36573963 TGTCATGGTCCAACCATGGTCTTCCGTTCATAGTAC
66 TGCCATGGTCCAACCATGGTCTTACGTTCATAGTAC
36573999 CATAACCCAATTATGGTCTTATC
1 CATAACCCAATTATGGTCTTATC
36574022 CGTCAATTCA
Statistics
Matches: 116, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 116 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (101 bp):
CATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAACTATGGTCTTACATATAAACAC
TGCCATGGTCCAACCATGGTCTTACGTTCATAGTAC
Found at i:36576215 original size:130 final size:129
Alignment explanation
Indices: 36575948--36576199 Score: 461
Period size: 130 Copynumber: 2.0 Consensus size: 129
36575938 AAAATATCTC
*
36575948 ATTAAAATATTAATAAAATAATATTTATCTAATTAAATAATTATAAAATATCATCAAAATATCTC
1 ATTAAAATATTAATAAAATAATATTTATCTAATTAAATAATTATAAAATATCATCAAAATATCAC
**
36576013 TAATATCATCATTGCCTTCTAGAGTTCTCTCTCTTTTTCTAATTGATTATTTTGCCCTTCATTTT
66 TAATATCATCATTGCCTTCTAGAGTTCTCTCTC-TTTTCTAATTGACCATTTTGCCCTTCATTTT
36576078 ATTAAAATATTAATAAAATAATATTTATCTAATTAAATAATTATAAAATATCATCAAAATATCAC
1 ATTAAAATATTAATAAAATAATATTTATCTAATTAAATAATTATAAAATATCATCAAAATATCAC
36576143 TAATATCATCATTGCCTTCTAGAGTTCTCTCTC-TTTCTAATTGACCATTTTGCCCTT
66 TAATATCATCATTGCCTTCTAGAGTTCTCTCTCTTTTCTAATTGACCATTTTGCCCTT
36576200 TATGATCTTT
Statistics
Matches: 119, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
128 22 0.18
130 97 0.82
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.43
Consensus pattern (129 bp):
ATTAAAATATTAATAAAATAATATTTATCTAATTAAATAATTATAAAATATCATCAAAATATCAC
TAATATCATCATTGCCTTCTAGAGTTCTCTCTCTTTTCTAATTGACCATTTTGCCCTTCATTTT
Found at i:36576730 original size:24 final size:24
Alignment explanation
Indices: 36576703--36576808 Score: 74
Period size: 24 Copynumber: 4.4 Consensus size: 24
36576693 ATGGCTCTCT
36576703 TGAGCTTCCTGATATTAGCTCGCA
1 TGAGCTTCCTGATATTAGCTCGCA
* * * *
36576727 TGAGCTTCCT-AAATTTGGCTCTCT
1 TGAGCTTCCTGATA-TTAGCTCGCA
* *
36576751 TAAGCTTCCTG-T-TTATGGCTCGTA
1 TGAGCTTCCTGATATTA--GCTCGCA
* *
36576775 TGAGCTTCCCGATAATTGGCTCGCA
1 TGAGCTTCCTGAT-ATTAGCTCGCA
*
36576800 AGAGCTTCC
1 TGAGCTTCC
36576809 CGTTGCATAG
Statistics
Matches: 60, Mismatches: 15, Indels: 13
0.68 0.17 0.15
Matches are distributed among these distances:
22 2 0.03
23 2 0.03
24 39 0.65
25 15 0.25
27 2 0.03
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (24 bp):
TGAGCTTCCTGATATTAGCTCGCA
Found at i:36578798 original size:50 final size:51
Alignment explanation
Indices: 36578736--36578845 Score: 168
Period size: 50 Copynumber: 2.2 Consensus size: 51
36578726 CCATTTCAAT
*
36578736 CCTTTTCATAATTTCATGACATAGGTCATTTGAATACATACCTTTCCTTTC
1 CCTTTTCATAATTTCATGACATAGGTCATTTGAATACATACATTTCCTTTC
* * *
36578787 CCTTTT-ATAATTTCATGACATAGTTTATTTGAATGCATACATTTCCTTTC
1 CCTTTTCATAATTTCATGACATAGGTCATTTGAATACATACATTTCCTTTC
*
36578837 CTTTTTCAT
1 CCTTTTCAT
36578846 GCTTGTTGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
50 45 0.85
51 8 0.15
ACGTcount: A:0.25, C:0.21, G:0.07, T:0.47
Consensus pattern (51 bp):
CCTTTTCATAATTTCATGACATAGGTCATTTGAATACATACATTTCCTTTC
Found at i:36589417 original size:20 final size:21
Alignment explanation
Indices: 36589383--36589421 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
36589373 TTAGTAAAAG
36589383 GAAAACTTGAGTTTTTACATA
1 GAAAACTTGAGTTTTTACATA
36589404 GAAAACTT-AGTTTTTACA
1 GAAAACTTGAGTTTTTACA
36589422 CGGAATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (21 bp):
GAAAACTTGAGTTTTTACATA
Found at i:36591146 original size:17 final size:17
Alignment explanation
Indices: 36591124--36591159 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
36591114 AAAGATAGAT
36591124 TTTTAGTCTAAATATTA
1 TTTTAGTCTAAATATTA
* *
36591141 TTTTAGTTTAAATTTTA
1 TTTTAGTCTAAATATTA
36591158 TT
1 TT
36591160 ATTTGATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (17 bp):
TTTTAGTCTAAATATTA
Found at i:36591721 original size:16 final size:16
Alignment explanation
Indices: 36591700--36591735 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36591690 TTTTCACTCC
* *
36591700 CTCCCTCCCTCCTTCA
1 CTCCCTCACACCTTCA
36591716 CTCCCTCACACCTTCA
1 CTCCCTCACACCTTCA
36591732 CTCC
1 CTCC
36591736 ACAAAACGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.61, G:0.00, T:0.28
Consensus pattern (16 bp):
CTCCCTCACACCTTCA
Found at i:36597373 original size:24 final size:24
Alignment explanation
Indices: 36597341--36597388 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36597331 CTTTACGATT
36597341 CTACTTAACCAGCCTCTATTCTAA
1 CTACTTAACCAGCCTCTATTCTAA
36597365 CTACTTAACCAGCCTCTATTCTAA
1 CTACTTAACCAGCCTCTATTCTAA
36597389 GGCATGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.04, T:0.33
Consensus pattern (24 bp):
CTACTTAACCAGCCTCTATTCTAA
Found at i:36600279 original size:3 final size:3
Alignment explanation
Indices: 36600273--36600303 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
36600263 TTATTATTAT
36600273 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
36600304 TATTTGTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TAC
Found at i:36605869 original size:35 final size:35
Alignment explanation
Indices: 36605830--36605898 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
36605820 TTACCTCAAA
* * *
36605830 GCCTTTTTAGTTGAACTTCTTATCATGAATATTTT
1 GCCTTTCTAATTGAACTCCTTATCATGAATATTTT
36605865 GCCTTTCTAATTGAACTCCTTATCATGAATATTT
1 GCCTTTCTAATTGAACTCCTTATCATGAATATTT
36605899 CAGAATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (35 bp):
GCCTTTCTAATTGAACTCCTTATCATGAATATTTT
Found at i:36609006 original size:21 final size:21
Alignment explanation
Indices: 36608980--36609019 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36608970 TATATTTATT
*
36608980 CATAACATAGGTAAGTTCAAC
1 CATAACATACGTAAGTTCAAC
*
36609001 CATAACATACGTAATTTCA
1 CATAACATACGTAAGTTCA
36609020 CAAATATAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (21 bp):
CATAACATACGTAAGTTCAAC
Found at i:36609527 original size:176 final size:176
Alignment explanation
Indices: 36609233--36609586 Score: 672
Period size: 176 Copynumber: 2.0 Consensus size: 176
36609223 ATAAACCATT
*
36609233 TTATAAGAAATTACACTTTTTGAATCTTACCACCTTTTCATGAACGTAAGTATATTTCCATTTGG
1 TTATAAGAAATTACACTTTTTGAATCTTACCACCTTTTCATGAACATAAGTATATTTCCATTTGG
*
36609298 CCAAATACCATTTCAATGTATATCATTAATATTAAACATGATCTAATGCAACCAAAAGCTCAACA
66 CCAAATACCATTTCAATGAATATCATTAATATTAAACATGATCTAATGCAACCAAAAGCTCAACA
*
36609363 CAAACCTAAGCATCATCCACAATCTCAATCGATGAATTCATTTATG
131 CAAACCTAAGCATCATCCACAATCTCAATCAATGAATTCATTTATG
36609409 TTATAAGAAATTACACTTTTTGAATCTTACCACCTTTTCATGAACATAAGTATATTTCCATTTGG
1 TTATAAGAAATTACACTTTTTGAATCTTACCACCTTTTCATGAACATAAGTATATTTCCATTTGG
*
36609474 CCAATTACCATTTCAATGAATATCATTAATATTAAACATGATCTAATGCAACCAAAAGCTCAACA
66 CCAAATACCATTTCAATGAATATCATTAATATTAAACATGATCTAATGCAACCAAAAGCTCAACA
36609539 CAAACCTAAGCATCATCCACAATCTCAATCAATGAATTCATTTATG
131 CAAACCTAAGCATCATCCACAATCTCAATCAATGAATTCATTTATG
36609585 TT
1 TT
36609587 CAAGTCAGTA
Statistics
Matches: 174, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
176 174 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (176 bp):
TTATAAGAAATTACACTTTTTGAATCTTACCACCTTTTCATGAACATAAGTATATTTCCATTTGG
CCAAATACCATTTCAATGAATATCATTAATATTAAACATGATCTAATGCAACCAAAAGCTCAACA
CAAACCTAAGCATCATCCACAATCTCAATCAATGAATTCATTTATG
Found at i:36631860 original size:50 final size:48
Alignment explanation
Indices: 36631752--36631861 Score: 143
Period size: 50 Copynumber: 2.3 Consensus size: 48
36631742 AATTTATATT
** *
36631752 TATA-TTTAATTTTTTATTATTTATTTGTAAAAATAATTGTTTTAAAA
1 TATATTTTAATTTTTTATTATTTATTTGTAAAAATAATCATTATAAAA
*
36631799 TCTATTTTAATTTTATTATTATTTATTTGTACCAAAA-AATCATTATAAAA
1 TATATTTTAATTTT-TTATTATTTATTTGTA--AAAATAATCATTATAAAA
36631849 TATATTTTAATTT
1 TATATTTTAATTT
36631862 AAATTTTGGT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
47 3 0.06
48 9 0.17
49 16 0.30
50 22 0.41
51 4 0.07
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.55
Consensus pattern (48 bp):
TATATTTTAATTTTTTATTATTTATTTGTAAAAATAATCATTATAAAA
Found at i:36632017 original size:207 final size:208
Alignment explanation
Indices: 36631655--36632076 Score: 828
Period size: 207 Copynumber: 2.0 Consensus size: 208
36631645 TTTTTGGTGC
*
36631655 AAATTTCGGTCAATATTGACCGTATTGGTGCGTATCGATTGATTCCATTCGTACCAGTCGATGCC
1 AAATTTTGGTCAATATTGACCGTATTGGTGCGTATCGATTGATTCCATTCGTACCAGTCGATGCC
36631720 AAAAAAAATTAATTCTAAAATAAATTTATATTTATATTTAATTTTTTATTATTTATTTGTAAAAA
66 AAAAAAAATTAATTCTAAAATAAATTTATATTTATATTTAATTTTTTATTATTTATTTGTAAAAA
36631785 TAATTGTTTTAAAATCTATTTTAATTTTATTATTATTTATTTGTACCAAAAAATCATTATAAAAT
131 TAATTGTTTTAAAATCTATTTTAATTTTATTATTATTTATTTGTACCAAAAAATCATTATAAAAT
36631850 ATATTTT-AATTT
196 ATATTTTAAATTT
36631862 AAATTTTGGTCAATATTGACCGTATTGGTGCGTATCGATTGATTCCATTCGTACCAGTCGATGCC
1 AAATTTTGGTCAATATTGACCGTATTGGTGCGTATCGATTGATTCCATTCGTACCAGTCGATGCC
36631927 AAAAAAAATTAATTCTAAAATAAATTTATATTTATATTTAATTTTTTATTATTTATTTGTAAAAA
66 AAAAAAAATTAATTCTAAAATAAATTTATATTTATATTTAATTTTTTATTATTTATTTGTAAAAA
36631992 TAATTGTTTTAAAATCTATTTTAATTTTATTATTATTTATTTGTACCAAAAAATCATTATAAAAT
131 TAATTGTTTTAAAATCTATTTTAATTTTATTATTATTTATTTGTACCAAAAAATCATTATAAAAT
36632057 ATATTTTAAATTT
196 ATATTTTAAATTT
36632070 AAATTTT
1 AAATTTT
36632077 ATTTATTTAT
Statistics
Matches: 213, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
207 201 0.94
208 12 0.06
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (208 bp):
AAATTTTGGTCAATATTGACCGTATTGGTGCGTATCGATTGATTCCATTCGTACCAGTCGATGCC
AAAAAAAATTAATTCTAAAATAAATTTATATTTATATTTAATTTTTTATTATTTATTTGTAAAAA
TAATTGTTTTAAAATCTATTTTAATTTTATTATTATTTATTTGTACCAAAAAATCATTATAAAAT
ATATTTTAAATTT
Found at i:36632033 original size:49 final size:49
Alignment explanation
Indices: 36631959--36632084 Score: 143
Period size: 51 Copynumber: 2.6 Consensus size: 49
36631949 AATTTATATT
** *
36631959 TATA-TTTAATTTT-TTATTATTTATTTGTA-AAAATAATTGTTTTAAAA
1 TATATTTTAATTTTATTATTATTTATTTGTACAAAA-AATCATTATAAAA
*
36632006 TCTATTTTAATTTTATTATTATTTATTTGTACCAAAAAATCATTATAAAA
1 TATATTTTAATTTTATTATTATTTATTTGTA-CAAAAAATCATTATAAAA
*
36632056 TATATTTTAAATTTAAATT-TTATTTATTT
1 TATATTTT-AATTT-TATTATTATTTATTT
36632085 ATTTTAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
47 3 0.04
48 9 0.13
49 16 0.24
50 17 0.25
51 19 0.28
52 3 0.04
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (49 bp):
TATATTTTAATTTTATTATTATTTATTTGTACAAAAAATCATTATAAAA
Found at i:36650343 original size:95 final size:97
Alignment explanation
Indices: 36650157--36650350 Score: 311
Period size: 95 Copynumber: 2.0 Consensus size: 97
36650147 TTCAGATGAC
* * * * *
36650157 TTTAATTACTGGATTGCCCCCATTGCACTGTTTAAAAAAAATGAAAAGTAGAAAAAAAAAAGGTT
1 TTTAATTACCGGATTACCCCAATTGCACTGTTTAAAAAAAATGAAAAGGAGAAAAAAAAAAGCTT
* *
36650222 TTTAATGAATGCTGAGGCCTCGCTATTTTCAT
66 CTTAATGAATGCTGAGCCCTCGCTATTTTCAT
36650254 TTTAATTACCGGATTACCCCAATTGCACTGTTT-AAAAAAATGAAAAGGAG-AAAAAAAAAGCTT
1 TTTAATTACCGGATTACCCCAATTGCACTGTTTAAAAAAAATGAAAAGGAGAAAAAAAAAAGCTT
36650317 CTTAATGAATGCTGAGCCCTCGCTATTTTCAT
66 CTTAATGAATGCTGAGCCCTCGCTATTTTCAT
36650349 TT
1 TT
36650351 CGTCACTTCC
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 44 0.49
96 16 0.18
97 30 0.33
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (97 bp):
TTTAATTACCGGATTACCCCAATTGCACTGTTTAAAAAAAATGAAAAGGAGAAAAAAAAAAGCTT
CTTAATGAATGCTGAGCCCTCGCTATTTTCAT
Found at i:36651479 original size:14 final size:14
Alignment explanation
Indices: 36651459--36651493 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
36651449 AATCAACCTT
36651459 CACCTCCACCAATC
1 CACCTCCACCAATC
* *
36651473 TACCTCCACCGATC
1 CACCTCCACCAATC
36651487 CACCTCC
1 CACCTCC
36651494 GGTCCTCCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.57, G:0.03, T:0.17
Consensus pattern (14 bp):
CACCTCCACCAATC
Found at i:36653237 original size:24 final size:24
Alignment explanation
Indices: 36653210--36653257 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
36653200 GAATTTTTAA
36653210 GTTTTAAATTGTTTAAACTCAATT
1 GTTTTAAATTGTTTAAACTCAATT
*
36653234 GTTTTAAATTGTTTAAATTCAATT
1 GTTTTAAATTGTTTAAACTCAATT
36653258 TTTAAGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.52
Consensus pattern (24 bp):
GTTTTAAATTGTTTAAACTCAATT
Found at i:36658558 original size:3 final size:3
Alignment explanation
Indices: 36658550--36658575 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36658540 CCCAAAGTGT
36658550 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
36658576 GTCAAGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:36670815 original size:26 final size:27
Alignment explanation
Indices: 36670759--36670819 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
36670749 TATTTAAAAG
36670759 GAAAAATAAATTTGGAAAATTCCATTT
1 GAAAAATAAATTTGGAAAATTCCATTT
* *
36670786 -AAAAAGTAAATTT-GAATA-TGCATTT
1 GAAAAA-TAAATTTGGAAAATTCCATTT
36670811 G-AAAATAAA
1 GAAAAATAAA
36670820 AAAAAATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
24 4 0.13
25 10 0.33
26 9 0.30
27 7 0.23
ACGTcount: A:0.52, C:0.05, G:0.11, T:0.31
Consensus pattern (27 bp):
GAAAAATAAATTTGGAAAATTCCATTT
Found at i:36671963 original size:21 final size:21
Alignment explanation
Indices: 36671937--36671989 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
36671927 AGCGGTGGCG
*
36671937 GTGAGATTAGTTACTATAGCA
1 GTGAGATTAGATACTATAGCA
* * *
36671958 GTGAGATTGGATACTGTAGCG
1 GTGAGATTAGATACTATAGCA
36671979 GTGAGATTAGA
1 GTGAGATTAGA
36671990 AACAGTGGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (21 bp):
GTGAGATTAGATACTATAGCA
Found at i:36678154 original size:2 final size:2
Alignment explanation
Indices: 36678147--36678173 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36678137 TTTAAATAGT
36678147 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
36678174 GGCAACTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36680185 original size:12 final size:12
Alignment explanation
Indices: 36680168--36680193 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36680158 TGACTCTTTA
36680168 TAGTATTCAAGT
1 TAGTATTCAAGT
36680180 TAGTATTCAAGT
1 TAGTATTCAAGT
36680192 TA
1 TA
36680194 TGATCCCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
TAGTATTCAAGT
Found at i:36687629 original size:111 final size:112
Alignment explanation
Indices: 36687435--36687658 Score: 416
Period size: 111 Copynumber: 2.0 Consensus size: 112
36687425 ACCAAAAAAT
36687435 TACTAAATCTCATATTATGAGAGTGATTAGTATGCATCATTGATATTAAAAAATTACTAAAGCTT
1 TACTAAATCTCATATTATGAGAGTGATTAGTATGCATCATTGATATTAAAAAATTACTAAAGCTT
36687500 TTCACTTGGACCTTAGGAATAGTTAGGATACTTATG-ATGACATAGG
66 TTCACTTGGACCTTAGGAATAGTTAGGATACTTATGCATGACATAGG
36687546 TACTAAATCTCATATTA-GATGAGTGATTAGTATGCATCATTGATATTAAAAAATTACTAAAGCT
1 TACTAAATCTCATATTATGA-GAGTGATTAGTATGCATCATTGATATTAAAAAATTACTAAAGCT
36687610 TTTCACTTGGACCTTAGGAATAGTTAGGATACTTATGTCATGACATAGG
65 TTTCACTTGGACCTTAGGAATAGTTAGGATACTTATG-CATGACATAGG
36687659 ATTCCGATAT
Statistics
Matches: 110, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
110 2 0.02
111 98 0.89
113 10 0.09
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (112 bp):
TACTAAATCTCATATTATGAGAGTGATTAGTATGCATCATTGATATTAAAAAATTACTAAAGCTT
TTCACTTGGACCTTAGGAATAGTTAGGATACTTATGCATGACATAGG
Found at i:36687825 original size:43 final size:43
Alignment explanation
Indices: 36687663--36687833 Score: 120
Period size: 43 Copynumber: 4.0 Consensus size: 43
36687653 CATAGGATTC
* * * **
36687663 CGATATGTGATTACATGTAAGGCCACGTCTATGACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
* * * * * *
36687706 CGAT-TTGCGATTTACGTGTAAGACCATGTCTGGG-CATCGACAT
1 CGATATT-TGATTT-CATGTAAGACCACGTCTGGGACGTTGGCAT
** * *
36687749 CG-TATAGGAGTTT-GTGTAAGACC-CTGTCGGGGACAG-TGGCAT
1 CGATATTTGA-TTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCAT
36687791 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
36687834 TGAATGAGCT
Statistics
Matches: 95, Mismatches: 22, Indels: 22
0.68 0.16 0.16
Matches are distributed among these distances:
41 16 0.17
42 15 0.16
43 48 0.51
44 16 0.17
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:36688772 original size:350 final size:350
Alignment explanation
Indices: 36688131--36688831 Score: 1402
Period size: 350 Copynumber: 2.0 Consensus size: 350
36688121 ACTTTGTGTG
36688131 TTTATTCAACATTTTATAGATTTTTGAAAGCTAGCTTTGAGCTCGGGGATCGTCAAGGATTATCG
1 TTTATTCAACATTTTATAGATTTTTGAAAGCTAGCTTTGAGCTCGGGGATCGTCAAGGATTATCG
36688196 TCACACTATCAACTATTATTCGGTACTTTTGAAGTTTGTAATTAAGACATATGGCATGTATAGGC
66 TCACACTATCAACTATTATTCGGTACTTTTGAAGTTTGTAATTAAGACATATGGCATGTATAGGC
36688261 TAGTTTTGATATGTTTGGGTTTTGAAATTGTGTATAAATAGCCATGCGAAAATGGATTGATCATG
131 TAGTTTTGATATGTTTGGGTTTTGAAATTGTGTATAAATAGCCATGCGAAAATGGATTGATCATG
36688326 ATGTTAATGTTTGTGAGAATTCGGTCATGTTTTAAGCTTATTATGGAAGTATGTTTCATGGTATA
196 ATGTTAATGTTTGTGAGAATTCGGTCATGTTTTAAGCTTATTATGGAAGTATGTTTCATGGTATA
36688391 TAATGCATGAGTTCTTATAAACTAAGTTAGGTATAATTGATGGTTTGTATATTGGTTGATTAGGT
261 TAATGCATGAGTTCTTATAAACTAAGTTAGGTATAATTGATGGTTTGTATATTGGTTGATTAGGT
36688456 ATGATTTGTGAAGGAAAAGTATGCA
326 ATGATTTGTGAAGGAAAAGTATGCA
36688481 TTTATTCAACATTTTATAGATTTTTGAAAGCTAGCTTTGAGCTCGGGGATCGTCAAGGATTATCG
1 TTTATTCAACATTTTATAGATTTTTGAAAGCTAGCTTTGAGCTCGGGGATCGTCAAGGATTATCG
36688546 TCACACTATCAACTATTATTCGGTACTTTTGAAGTTTGTAATTAAGACATATGGCATGTATAGGC
66 TCACACTATCAACTATTATTCGGTACTTTTGAAGTTTGTAATTAAGACATATGGCATGTATAGGC
36688611 TAGTTTTGATATGTTTGGGTTTTGAAATTGTGTATAAATAGCCATGCGAAAATGGATTGATCATG
131 TAGTTTTGATATGTTTGGGTTTTGAAATTGTGTATAAATAGCCATGCGAAAATGGATTGATCATG
36688676 ATGTTAATGTTTGTGAGAATTCGGTCATGTTTTAAGCTTATTATGGAAGTATGTTTCATGGTATA
196 ATGTTAATGTTTGTGAGAATTCGGTCATGTTTTAAGCTTATTATGGAAGTATGTTTCATGGTATA
36688741 TAATGCATGAGTTCTTATAAACTAAGTTAGGTATAATTGATGGTTTGTATATTGGTTGATTAGGT
261 TAATGCATGAGTTCTTATAAACTAAGTTAGGTATAATTGATGGTTTGTATATTGGTTGATTAGGT
36688806 ATGATTTGTGAAGGAAAAGTATGCA
326 ATGATTTGTGAAGGAAAAGTATGCA
36688831 T
1 T
36688832 ATAATTTATG
Statistics
Matches: 351, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
350 351 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (350 bp):
TTTATTCAACATTTTATAGATTTTTGAAAGCTAGCTTTGAGCTCGGGGATCGTCAAGGATTATCG
TCACACTATCAACTATTATTCGGTACTTTTGAAGTTTGTAATTAAGACATATGGCATGTATAGGC
TAGTTTTGATATGTTTGGGTTTTGAAATTGTGTATAAATAGCCATGCGAAAATGGATTGATCATG
ATGTTAATGTTTGTGAGAATTCGGTCATGTTTTAAGCTTATTATGGAAGTATGTTTCATGGTATA
TAATGCATGAGTTCTTATAAACTAAGTTAGGTATAATTGATGGTTTGTATATTGGTTGATTAGGT
ATGATTTGTGAAGGAAAAGTATGCA
Found at i:36690404 original size:54 final size:54
Alignment explanation
Indices: 36690317--36690432 Score: 187
Period size: 54 Copynumber: 2.1 Consensus size: 54
36690307 GTTGAGACTA
* *
36690317 ATTCAGAATAGGTTACAAAATCGATGACAACTCTATAGAGAGGTAGAACACCGAT
1 ATTC-GAATAGGTTACAAAATCGATGACAACTCTACAGAGAGGTAAAACACCGAT
* *
36690372 ATTCGAATAGGTTACAAAATTGATGACAACTCTACAGAGAGGTAAAAGACCGAT
1 ATTCGAATAGGTTACAAAATCGATGACAACTCTACAGAGAGGTAAAACACCGAT
36690426 ATTCGAA
1 ATTCGAA
36690433 AATAATGTTG
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
54 53 0.93
55 4 0.07
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (54 bp):
ATTCGAATAGGTTACAAAATCGATGACAACTCTACAGAGAGGTAAAACACCGAT
Found at i:36696441 original size:23 final size:22
Alignment explanation
Indices: 36696398--36696455 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
36696388 AAAGGATATC
* *
36696398 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
36696419 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
36696442 TGCATATCATATCT
1 TACAAATCATATCT
36696456 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:36697376 original size:100 final size:100
Alignment explanation
Indices: 36697283--36698248 Score: 582
Period size: 100 Copynumber: 9.3 Consensus size: 100
36697273 GCCAAAGAGA
* * * * * *
36697283 TAAGATTTGCCGTTGTGGCTTTAATCTATTTAATTGCAATGTCGGGGGAACCAGATTCGCCGTCG
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCG
*
36697348 TAGCTTCAATCTATTCCACTACACCGCCAGGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
*
36697383 TAAGATTCGCCGTTGTGGCTTCAATCCATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCG
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCG
36697448 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
36697483 TAAGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTC
1 TAAGA-TTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTC
*
36697547 GTAGCTTCAATCTGTTCCACTACCCCGCCAGGGAAG
65 GTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
** * **** * * * *
36697583 TAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGTAATGTCAAAGAGATAAGATTCGCTGCCC
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCG-TC
** * * * * * * **
36697648 ACAGCTTTAATCCGCTCCACTTCATCTAATCTAAGTCTTAATGCCAG
65 GTAGCTTCAATCTGTTCCAC-T-A-C--A-C--CG-C--CAGGGAAG
** ** * * * * * * * * **
36697695 GGAGATAAG--ATTCGCTGCCCTCAGCTTTAATCT-ACTCCACTATAACGTTAGGGAAGTAAGAT
1 TAAGATTCGCCGTT-G-TGGCTTCA-ATCT-ATTTAACTGCA--AT---GTTGGGGAAACAAGAT
** * * ** * ** **
36697757 TCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCA-ATAAG
57 TCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
** **** * * ** * ** ** *
36697800 -ATAGTATTCGTTGCCCACGGCTTCAATCCGCTCCACTTCAGCTATTTTAATTCTTAACGCTAAG
1 TA-AG-ATTCGCCG-TTGTGGCTTCAAT---CT--A-TTTA---ACTGCAA-TGTT-GGGGAAAC
* ** ** * * * * ** * *
36697864 GAGATAAG-ATTCGCT-GCCCTC-AGCTTTAATCTGCTCCGCTATAACGTCAGGGAAG
52 AAGATTCGCCGTCG-TAG-CTTCAATCTGT--TC--CACTAC---ACCGCCAGGGAAG
* * * * * *
36697919 TAAGATTCGCCATTTTGGCTTCAATCTATTTGACTGCAATGTCGGGGAACCAAGATTCACCGTCG
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCG
* *
36697984 TAGCTTCAATTTGTTCCACTACACCGCCAAGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
** *
36698019 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTTACCGTCA
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCG
36698084 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
* * *
36698119 TAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTACAATGTTGGAGAAACAAGATTCGCCGTCG
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCG
36698184 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
36698219 TAAGATTCGCCGTTGTGGCTTCAATCTATT
1 TAAGATTCGCCGTTGTGGCTTCAATCTATT
36698249 CCATTGTAAT
Statistics
Matches: 650, Mismatches: 163, Indels: 106
0.71 0.18 0.12
Matches are distributed among these distances:
99 3 0.00
100 458 0.70
101 19 0.03
102 1 0.00
103 4 0.01
104 1 0.00
105 6 0.01
106 15 0.02
107 15 0.02
108 5 0.01
109 3 0.00
110 4 0.01
111 12 0.02
112 29 0.04
113 8 0.01
114 6 0.01
115 8 0.01
116 1 0.00
117 20 0.03
118 26 0.04
119 5 0.01
120 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (100 bp):
TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCG
TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
Found at i:36697389 original size:50 final size:50
Alignment explanation
Indices: 36697335--36697617 Score: 280
Period size: 50 Copynumber: 5.7 Consensus size: 50
36697325 CGGGGGAACC
36697335 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTA
* * * ** * ** *** **
36697385 AGATTCGCCGTTGTGGCTTCAATCCATTTAACTGCAATGTTGGGGAAACA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTA
*
36697435 AGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTA
* * ** * ** *** **
36697485 AGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACA
1 AGA-TTCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTA
* *
36697535 AGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACCCCGCCAGGGAAGTA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTA
* *
36697585 AGATTCGCCGTTGTGGCTTCAATCTATTCCACT
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACT
36697618 GTAATGTCAA
Statistics
Matches: 174, Mismatches: 57, Indels: 4
0.74 0.24 0.02
Matches are distributed among these distances:
49 3 0.02
50 168 0.97
51 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (50 bp):
AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTA
Found at i:36697642 original size:50 final size:49
Alignment explanation
Indices: 36697250--36697618 Score: 245
Period size: 50 Copynumber: 7.4 Consensus size: 49
36697240 ACTACCTTTA
* * * * ** *
36697250 GCTTTAATCTGTTCTACTGTAACGCCAAAGAGATAAGATTTGCCGTTGTG
1 GCTTCAATCTATTCCACTGCAACGCCAGGGA-ATAAGATTCGCCGTTGTG
* ** * * ** ** * *
36697300 GCTTTAATCTATTTAATTGCAATGTCGGGGGAACCAGATTCGCCGTCGTA
1 GCTTCAATCTATTCCACTGCAACG-CCAGGGAATAAGATTCGCCGTTGTG
* *
36697350 GCTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATTCGCCGTTGTG
1 GCTTCAATCTATTCCACTGCAACGCCAGGGAA-TAAGATTCGCCGTTGTG
* ** * *** * * *
36697400 GCTTCAATCCATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCGTA
1 GCTTCAATCTATTCCACTGCAACGCCAGGG-AATAAGATTCGCCGTTGTG
* * *
36697450 GCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATTTC-CCGTTGTG
1 GCTTCAATCTATTCCACTGCAACGCCAGGGAA-TAAGA-TTCGCCGTTGTG
** * *** * * *
36697500 GCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTCGTA
1 GCTTCAATCTATTCCACTGCAACGCCAGGG-AATAAGATTCGCCGTTGTG
* * **
36697550 GCTTCAATCTGTTCCACTACCCCGCCAGGGAAGTAAGATTCGCCGTTGTG
1 GCTTCAATCTATTCCACTGCAACGCCAGGGAA-TAAGATTCGCCGTTGTG
36697600 GCTTCAATCTATTCCACTG
1 GCTTCAATCTATTCCACTG
36697619 TAATGTCAAA
Statistics
Matches: 231, Mismatches: 80, Indels: 16
0.71 0.24 0.05
Matches are distributed among these distances:
49 13 0.06
50 208 0.90
51 10 0.04
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (49 bp):
GCTTCAATCTATTCCACTGCAACGCCAGGGAATAAGATTCGCCGTTGTG
Found at i:36697869 original size:168 final size:168
Alignment explanation
Indices: 36697575--36697959 Score: 567
Period size: 168 Copynumber: 2.3 Consensus size: 168
36697565 ACTACCCCGC
* ** * *
36697575 CAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGTAATGTCAAAGAGATAAGATT
1 CAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCAAAGAGATAAGATT
* * * *
36697640 CGCTGCCCACAGCTTTAATCCGCTCCACTTCATCTAATCTAAGTCTTAATGCCAGGGAGATAAGA
66 CGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCTAAGTCTTAACGCCAAGGAGATAAGA
36697705 TTCGCTGCCCTCAGCTTTAATCTACTCCACTATAACGT
131 TTCGCTGCCCTCAGCTTTAATCTACTCCACTATAACGT
*
36697743 TAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCAATA-AGAT-AGTA
1 CAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCAA-AGAGATAAG-A
* * * * * *
36697806 TTCGTTGCCCACGGCTTCAATCCGCTCCACTTCAGCTATTTTAATTCTTAACGCTAAGGAGATAA
64 TTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCTAAGTCTTAACGCCAAGGAGATAA
* *
36697871 GATTCGCTGCCCTCAGCTTTAATCTGCTCCGCTATAACGT
129 GATTCGCTGCCCTCAGCTTTAATCTACTCCACTATAACGT
*
36697911 CAGGGAAGTAAGATTCGCCATTTTGGCTTCAATCTATTTGACTGCAATG
1 CAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATG
36697960 TCGGGGAACC
Statistics
Matches: 195, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
167 2 0.01
168 192 0.98
169 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (168 bp):
CAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCAAAGAGATAAGATT
CGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCTAAGTCTTAACGCCAAGGAGATAAGA
TTCGCTGCCCTCAGCTTTAATCTACTCCACTATAACGT
Found at i:36697967 original size:50 final size:50
Alignment explanation
Indices: 36697906--36698251 Score: 262
Period size: 50 Copynumber: 6.9 Consensus size: 50
36697896 GCTCCGCTAT
* * * ** *
36697906 AACGTCAGGGAAGTAAGATTCGCCATTTTGGCTTCAATCTATTTGACTGC
1 AACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTAC
* * * ** * * * * *
36697956 AATGTCGGGGAACCAAGATTCACCGTCGTAGCTTCAATTTGTTCCACTAC
1 AACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTAC
* * ** *
36698006 ACCGCCAAGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGC
1 AACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTAC
* *** ** ** ** * *
36698056 AATGTTGGGGAAACAAGATTTACCGTCATAGCTTCAATCTGTTCCACTAC
1 AACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTAC
* * **
36698106 ACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTAC
1 AACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTAC
* ** ** * * *
36698156 AATG-TTGGAGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTAC
1 AACGCCAGG-GAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTAC
*
36698206 ACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCA
1 AACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCA
36698252 TTGTAATGCC
Statistics
Matches: 213, Mismatches: 81, Indels: 4
0.71 0.27 0.01
Matches are distributed among these distances:
49 2 0.01
50 209 0.98
51 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (50 bp):
AACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTAC
Found at i:36703273 original size:16 final size:15
Alignment explanation
Indices: 36703241--36703283 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 15
36703231 TTTGTAAAGT
*
36703241 TTTA-TTTTTATTTA
1 TTTATTTTTTATTAA
36703255 TTTATTTTTTACTTAA
1 TTTATTTTTTA-TTAA
36703271 TTTAATTTTTTAT
1 TTT-ATTTTTTAT
36703284 GTAAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 4 0.16
15 6 0.24
16 7 0.28
17 8 0.32
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTTTTATTAA
Found at i:36719026 original size:18 final size:18
Alignment explanation
Indices: 36719003--36719037 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
36718993 TTATGGGGCA
36719003 TTTATTCTATTT-GTTTTT
1 TTTATT-TATTTAGTTTTT
36719021 TTTATTTATTTAGTTTT
1 TTTATTTATTTAGTTTT
36719038 ATATAAGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.77
Consensus pattern (18 bp):
TTTATTTATTTAGTTTTT
Found at i:36719276 original size:45 final size:44
Alignment explanation
Indices: 36719212--36719323 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 44
36719202 GTTCCCTTCC
* * * *
36719212 TTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-CAT
1 TTCAATCTACTCCATTGCAACTTCAGAGAGATAAGACTTGTAC-T
* *
36719256 CTTCAGTCTACTTCATTGCAACTTCAGAGAGATAAGACTTGTACT
1 -TTCAATCTACTCCATTGCAACTTCAGAGAGATAAGACTTGTACT
*
36719301 TTCAATCTGCTCCATTGCAACTT
1 TTCAATCTACTCCATTGCAACTT
36719324 AAGATTCGTA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 20 0.35
45 36 0.63
46 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (44 bp):
TTCAATCTACTCCATTGCAACTTCAGAGAGATAAGACTTGTACT
Found at i:36719493 original size:44 final size:44
Alignment explanation
Indices: 36719440--36719772 Score: 135
Period size: 44 Copynumber: 7.6 Consensus size: 44
36719430 CGATATGCTG
*
36719440 CACTACTGCTTAGGGAGACAGGA-TCTACAATCTTCAACCTACTC
1 CACTACTGCTTAGGGAGATAGGATTC-ACAATCTTCAACCTACTC
* * ** * * * *
36719484 CACTGCTGCTCAGGGAGATAGGATTGGC-AGCTTAAATCTGCTTC
1 CACTACTGCTTAGGGAGATAGGATTCACAATCTTCAACCTAC-TC
* * ** * * *
36719528 C-CTACTACATT-GGGAGGATAAGATTCACCGTCTTCGATCTGCTC
1 CACTACTGC-TTAGGGA-GATAGGATTCACAATCTTCAACCTACTC
* * * *
36719572 CACTACTGCTTGGGGAGACAGGA-TCTACAATCCTCAACTTACTC
1 CACTACTGCTTAGGGAGATAGGATTC-ACAATCTTCAACCTACTC
* * ***** * * *
36719616 CACTGCTGCTCAGGGAGATAGGATT-GGTGGCTTAAATCTGCTTC
1 CACTACTGCTTAGGGAGATAGGATTCACAATCTTCAACCTAC-TC
* * * ** * * *
36719660 C-CTACTACATT-GGGAGGATAAGATTCGCCGTCTTCGATCTGCTC
1 CACTACTGC-TTAGGGA-GATAGGATTCACAATCTTCAACCTACTC
* *
36719704 CACTACTGCTTGGGGAGACAGGA-TCTACAATCTTCAACCTACTC
1 CACTACTGCTTAGGGAGATAGGATTC-ACAATCTTCAACCTACTC
* * *
36719748 CGCTGCTGCTCAGGGAGATAGGATT
1 CACTACTGCTTAGGGAGATAGGATT
36719773 GGTAATTTGT
Statistics
Matches: 206, Mismatches: 66, Indels: 33
0.68 0.22 0.11
Matches are distributed among these distances:
43 37 0.18
44 126 0.61
45 43 0.21
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (44 bp):
CACTACTGCTTAGGGAGATAGGATTCACAATCTTCAACCTACTC
Found at i:36719775 original size:132 final size:132
Alignment explanation
Indices: 36719427--36719776 Score: 619
Period size: 132 Copynumber: 2.7 Consensus size: 132
36719417 GATTTGCTGC
* * *
36719427 CTTCGATATGCTGCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTG
1 CTTCGATCTGCTCCACTACTGCTTGGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTG
*
36719492 CTCAGGGAGATAGGATTGGCAGCTTAAATCTGCTTCCCTACTACATTGGGAGGATAAGATTCACC
66 CTCAGGGAGATAGGATTGGTAGCTTAAATCTGCTTCCCTACTACATTGGGAGGATAAGATTCACC
36719557 GT
131 GT
* *
36719559 CTTCGATCTGCTCCACTACTGCTTGGGGAGACAGGATCTACAATCCTCAACTTACTCCACTGCTG
1 CTTCGATCTGCTCCACTACTGCTTGGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTG
* *
36719624 CTCAGGGAGATAGGATTGGTGGCTTAAATCTGCTTCCCTACTACATTGGGAGGATAAGATTCGCC
66 CTCAGGGAGATAGGATTGGTAGCTTAAATCTGCTTCCCTACTACATTGGGAGGATAAGATTCACC
36719689 GT
131 GT
*
36719691 CTTCGATCTGCTCCACTACTGCTTGGGGAGACAGGATCTACAATCTTCAACCTACTCCGCTGCTG
1 CTTCGATCTGCTCCACTACTGCTTGGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTG
36719756 CTCAGGGAGATAGGATTGGTA
66 CTCAGGGAGATAGGATTGGTA
36719777 ATTTGTAACT
Statistics
Matches: 206, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 206 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (132 bp):
CTTCGATCTGCTCCACTACTGCTTGGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTG
CTCAGGGAGATAGGATTGGTAGCTTAAATCTGCTTCCCTACTACATTGGGAGGATAAGATTCACC
GT
Found at i:36719872 original size:50 final size:50
Alignment explanation
Indices: 36719818--36719993 Score: 181
Period size: 50 Copynumber: 3.5 Consensus size: 50
36719808 TCGAGGAAAC
* * * * * *
36719818 AAGATTTGTTGTTGTAGCTTCAATTTGTTCCACTATACCGCCAGGAAAGT
1 AAGATTTGCTATTGTAGCTTCAATCTGTTCCACTACACCGTCAGGGAAGT
* * ** * ** * **
36719868 AAGATTCGCTATTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAACC
1 AAGATTTGCTATTGTAGCTTCAATCTGTTCCACTACACCGTCAGGGAAGT
* * *
36719918 AAGATTTACTGTCGTAGCTTCAATCTGTTCCACTACACCGTCAGGGAAGT
1 AAGATTTGCTATTGTAGCTTCAATCTGTTCCACTACACCGTCAGGGAAGT
36719968 AAGATTTGCTATTGTAGCTTCAATCT
1 AAGATTTGCTATTGTAGCTTCAATCT
36719994 ATTTAACTGC
Statistics
Matches: 94, Mismatches: 32, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
50 94 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (50 bp):
AAGATTTGCTATTGTAGCTTCAATCTGTTCCACTACACCGTCAGGGAAGT
Found at i:36719923 original size:100 final size:100
Alignment explanation
Indices: 36719779--36720007 Score: 341
Period size: 100 Copynumber: 2.3 Consensus size: 100
36719769 GATTGGTAAT
* * * ** * *
36719779 TTGTAACTTTAATCTGTTTAACTGCAATGTCGAGGAAACAAGATTTGTTGTTGTAGCTTCAATTT
1 TTGTAGCTTCAATCTATTTAACTGCAATGTCGAGGAAACAAGATTTACTGTCGTAGCTTCAATCT
*
36719844 GTTCCACTATACCGCCAGGAAAGTAAGATTCGCTA
66 GTTCCACTACACCGCCAGGAAAGTAAGATTCGCTA
* *
36719879 TTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAACCAAGATTTACTGTCGTAGCTTCAATCT
1 TTGTAGCTTCAATCTATTTAACTGCAATGTCGAGGAAACAAGATTTACTGTCGTAGCTTCAATCT
* * *
36719944 GTTCCACTACACCGTCAGGGAAGTAAGATTTGCTA
66 GTTCCACTACACCGCCAGGAAAGTAAGATTCGCTA
36719979 TTGTAGCTTCAATCTATTTAACTGCAATG
1 TTGTAGCTTCAATCTATTTAACTGCAATG
36720008 CCAAAGAGAT
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 116 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (100 bp):
TTGTAGCTTCAATCTATTTAACTGCAATGTCGAGGAAACAAGATTTACTGTCGTAGCTTCAATCT
GTTCCACTACACCGCCAGGAAAGTAAGATTCGCTA
Found at i:36720293 original size:50 final size:50
Alignment explanation
Indices: 36720230--36720337 Score: 144
Period size: 50 Copynumber: 2.2 Consensus size: 50
36720220 AGAGAAGTAA
* * *
36720230 GATTCGCTATTGTAGCTTCAATCTATTTAACTGCAATGCCAAATAGATAG
1 GATTCGCTATTGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAG
* * * * *
36720280 GATTCGTTGTTGTAGCTTCAACCTATTCCATTGTAATGCCAAAGAGATAG
1 GATTCGCTATTGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAG
36720330 GATTCGCT
1 GATTCGCT
36720338 GCCCACAGCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (50 bp):
GATTCGCTATTGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAG
Found at i:36720434 original size:310 final size:313
Alignment explanation
Indices: 36719979--36720603 Score: 891
Period size: 310 Copynumber: 2.0 Consensus size: 313
36719969 AGATTTGCTA
* *
36719979 TTGTAGCTTCAATCTATTTAACTGCAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTCAATC
1 TTGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTCAATC
*
36720044 TGCTCCACTTCAGCTATTTCAAGTCTTAACATCAGGGAGATAAGATTCACTGCCCTCAGCTTTAA
66 TGCTCCACTTCAGCTATTTCAAGTCTTAACACCAGGGAGATAAGATTCACTGCCCTCAGCTTTAA
** * *
36720109 TCTGCTCTGCTATAACGTCAGGGAAGTAAGATTCGCCGTTTTGGCTTTAA-TTT-T-CAATGTCG
131 TCTGCTCCACTATAACGTCAGGGAAGTAAGATTCACCGTTTTGGCTTCAACTTTATGCAATGTCG
* * * * * *
36720171 GGAAACCAAGATTCACTGTCGTAGTTTCAATCTGTTCCATTACACCGCCAGAGAAG-TAAGATTC
196 GGAAACCAAGATTCAATATCATAGCTTCAATCTGTTCCACTACACCACCAG-GAAGCTAAGATTC
* *
36720235 GCTATTGTAGCTTCAATCTATTTAACTGCAATGCCAAA-TAGATAGGATTCGTTG
260 GCCATTGTAGCTTCAATCTATTCAACTGCAATGCCAAAGT-GATAGGATTCGTTG
* * * *
36720289 TTGTAGCTTCAACCTATTCCATTGTAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATC
1 TTGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTCAATC
* * * *
36720354 TGCTTCACTTCAGCTATTTCAAGTCTTAACGCCATGGAGATAAGATTCGCTGCCCTCAGCTTTAA
66 TGCTCCACTTCAGCTATTTCAAGTCTTAACACCAGGGAGATAAGATTCACTGCCCTCAGCTTTAA
36720419 TCTGCTCCACTATAACGTCAGGGAAGTAAGATTCACCGTTTTGGCTTCAATCTCTTTAACTGCAA
131 TCTGCTCCACTATAACGTCAGGGAAGTAAGATTCACCGTTTTGGCTTCAA---CTTT-A-TGCAA
* * *
36720484 TGTTGGGGAACCAAGATTCAATATCATAGCTTCAATCTGTTCCACTACACCACCAGGGAGCTAAG
191 TGTCGGGAAACCAAGATTCAATATCATAGCTTCAATCTGTTCCACTACACCACCAGGAAGCTAAG
* * *
36720549 ATTCGCCGTTGTAGCTTCAATCTATTCCACTGTAATGCCAAAGTGATAGGATTCG
256 ATTCGCCATTGTAGCTTCAATCTATTCAACTGCAATGCCAAAGTGATAGGATTCG
36720604 CTGCCCACAG
Statistics
Matches: 276, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
310 165 0.60
314 3 0.01
317 4 0.01
318 103 0.37
319 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (313 bp):
TTGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTCAATC
TGCTCCACTTCAGCTATTTCAAGTCTTAACACCAGGGAGATAAGATTCACTGCCCTCAGCTTTAA
TCTGCTCCACTATAACGTCAGGGAAGTAAGATTCACCGTTTTGGCTTCAACTTTATGCAATGTCG
GGAAACCAAGATTCAATATCATAGCTTCAATCTGTTCCACTACACCACCAGGAAGCTAAGATTCG
CCATTGTAGCTTCAATCTATTCAACTGCAATGCCAAAGTGATAGGATTCGTTG
Found at i:36720852 original size:44 final size:44
Alignment explanation
Indices: 36720772--36720857 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
36720762 AGACAGGATC
* * * * *
36720772 TACAATCTTTCACTTATTCCATTGTTATTTAAGGAGCTAGGACT
1 TACAATCTTCCACCTATTCCACTGCTATTCAAGGAGCTAGGACT
* *
36720816 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGA
1 TACAATCTTCCACCTATTCCACTGCTATTCAAGGAGCTAGGA
36720858 TTTGTGGTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (44 bp):
TACAATCTTCCACCTATTCCACTGCTATTCAAGGAGCTAGGACT
Found at i:36722928 original size:10 final size:10
Alignment explanation
Indices: 36722915--36722939 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36722905 CTTTTCTTTT
36722915 TTTTCCATCA
1 TTTTCCATCA
36722925 TTTTCCATCA
1 TTTTCCATCA
36722935 TTTTC
1 TTTTC
36722940 ATTTTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTCCATCA
Found at i:36723702 original size:8 final size:8
Alignment explanation
Indices: 36723689--36723716 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
36723679 ATATACAAAA
36723689 GAATTTAT
1 GAATTTAT
36723697 GAATTTAT
1 GAATTTAT
36723705 GAATTTAT
1 GAATTTAT
36723713 GAAT
1 GAAT
36723717 AATTATTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (8 bp):
GAATTTAT
Found at i:36725055 original size:19 final size:20
Alignment explanation
Indices: 36725017--36725057 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
36725007 AATAGTCTTT
36725017 AATGCATATAATGTAATGCA
1 AATGCATATAATGTAATGCA
36725037 AATGCATGA-AATG-AATGCA
1 AATGCAT-ATAATGTAATGCA
36725056 AA
1 AA
36725058 AAGAGACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 11 0.55
21 1 0.05
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (20 bp):
AATGCATATAATGTAATGCA
Found at i:36725926 original size:19 final size:20
Alignment explanation
Indices: 36725888--36725928 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
36725878 AATAGTCTTT
36725888 AATGCATATAATGTAATGCA
1 AATGCATATAATGTAATGCA
36725908 AATGCATGA-AATG-AATGCA
1 AATGCAT-ATAATGTAATGCA
36725927 AA
1 AA
36725929 AAGAGACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 11 0.55
21 1 0.05
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (20 bp):
AATGCATATAATGTAATGCA
Found at i:36728561 original size:23 final size:22
Alignment explanation
Indices: 36728531--36728575 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
36728521 AAATTAAATC
36728531 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
*
36728554 TCTAAGATTACATATCATATCT
1 TCTAAGATTACAAATCATATCT
36728576 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:36728578 original size:19 final size:19
Alignment explanation
Indices: 36728531--36728607 Score: 91
Period size: 19 Copynumber: 3.8 Consensus size: 19
36728521 AAATTAAATC
*
36728531 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
36728551 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
36728573 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
36728592 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
36728608 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
22 7 0.13
23 11 0.21
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:36732231 original size:27 final size:26
Alignment explanation
Indices: 36732201--36732269 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
36732191 TGTTCTGACC
36732201 CACAGCTCGTGTGAGCAAGCCCAT-ATT
1 CACAGCTCGTGTGAGCAA-CCC-TGATT
* **
36732228 CACAGCTTGTGTGAGC-ATTCTGATT
1 CACAGCTCGTGTGAGCAACCCTGATT
36732253 CACAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
36732270 TACATGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.03
25 19 0.53
26 1 0.03
27 15 0.42
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAACCCTGATT
Found at i:36739033 original size:20 final size:23
Alignment explanation
Indices: 36739008--36739048 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
36738998 GTACTTAAGT
36739008 ACATTTT-GTT-GCA-TTTTATG
1 ACATTTTAGTTAGCACTTTTATG
36739028 ACATTTTAGTTAGCACTTTTA
1 ACATTTTAGTTAGCACTTTTA
36739049 ACATTGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 3 0.17
23 5 0.28
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.51
Consensus pattern (23 bp):
ACATTTTAGTTAGCACTTTTATG
Found at i:36742324 original size:43 final size:43
Alignment explanation
Indices: 36742277--36742359 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
36742267 TTATGTGATT
36742277 GATATTGAAATGGAAAAGATGAGAAATAAATATGAGATGAGAA
1 GATATTGAAATGGAAAAGATGAGAAATAAATATGAGATGAGAA
* * *
36742320 GATATTGAAATGGAAATGATGAGAAATGATTATGAGATGA
1 GATATTGAAATGGAAAAGATGAGAAATAAATATGAGATGA
36742360 AAAATGAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (43 bp):
GATATTGAAATGGAAAAGATGAGAAATAAATATGAGATGAGAA
Found at i:36742831 original size:11 final size:14
Alignment explanation
Indices: 36742802--36742836 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
36742792 TATGTTGATA
36742802 TTGTTATTAAGGTG
1 TTGTTATTAAGGTG
36742816 TTGTTATTAAGGTG
1 TTGTTATTAAGGTG
36742830 TTGTTAT
1 TTGTTAT
36742837 CTTTGACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (14 bp):
TTGTTATTAAGGTG
Found at i:36748738 original size:20 final size:20
Alignment explanation
Indices: 36748713--36748754 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
36748703 AAATAGATAC
36748713 AAAGAAACAAACAAAGAAAT
1 AAAGAAACAAACAAAGAAAT
36748733 AAAGAAACAAACAAAGAAAT
1 AAAGAAACAAACAAAGAAAT
36748753 AA
1 AA
36748755 TCCTTAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.76, C:0.10, G:0.10, T:0.05
Consensus pattern (20 bp):
AAAGAAACAAACAAAGAAAT
Found at i:36751751 original size:16 final size:16
Alignment explanation
Indices: 36751727--36751769 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
36751717 GGAATTATTT
36751727 TTTTAAAATTATAAAA
1 TTTTAAAATTATAAAA
* *
36751743 TTTTCAAATTATATAA
1 TTTTAAAATTATAAAA
*
36751759 TTTAAAAATTA
1 TTTTAAAATTA
36751770 AAAGAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTTAAAATTATAAAA
Found at i:36778905 original size:20 final size:20
Alignment explanation
Indices: 36778876--36778913 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
36778866 GTCGTACACC
*
36778876 AATAATAATTTATTTTTATA
1 AATAACAATTTATTTTTATA
36778896 AATAACAATTTATTTTTA
1 AATAACAATTTATTTTTA
36778914 ACATGATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
AATAACAATTTATTTTTATA
Found at i:36785415 original size:23 final size:23
Alignment explanation
Indices: 36785389--36785436 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
36785379 TTGGGTGTTG
**
36785389 TTGGTGATGTTTTTTGTGTTATT
1 TTGGTGATACTTTTTGTGTTATT
* *
36785412 TTGGTGCTACTTTTTGTGTTGTT
1 TTGGTGATACTTTTTGTGTTATT
36785435 TT
1 TT
36785437 ATTGTTGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.06, C:0.04, G:0.25, T:0.65
Consensus pattern (23 bp):
TTGGTGATACTTTTTGTGTTATT
Found at i:36789384 original size:22 final size:21
Alignment explanation
Indices: 36789356--36789416 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
36789346 CTTCGTAATT
36789356 TCATTTATTATAT-TTATATTG
1 TCATTTATTATATATTATA-TG
36789377 CTCATTTATTTGATATATTATATG
1 -TCATTTA-TT-ATATATTATATG
* *
36789401 TCATTCATTATTTATT
1 TCATTTATTATATATT
36789417 TGTTCATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 6 0.18
22 9 0.26
23 8 0.24
24 6 0.18
25 5 0.15
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (21 bp):
TCATTTATTATATATTATATG
Found at i:36789769 original size:98 final size:98
Alignment explanation
Indices: 36789646--36789842 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
36789636 TTTTAAATAA
* * * *
36789646 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
36789711 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTCGATAAGTGGATGTTCTTTTAAAG
36789744 TAAAGGAAATATTCCAAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
36789809 TTAAATCTTCGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTCGATAAGTGGATGTTCTTTTAAAG
36789842 T
1 T
36789843 TTTATTGTAC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTCGATAAGTGGATGTTCTTTTAAAG
Found at i:36799157 original size:44 final size:44
Alignment explanation
Indices: 36799106--36799214 Score: 132
Period size: 44 Copynumber: 2.4 Consensus size: 44
36799096 GATCGCATCT
*
36799106 AGTCTTATCTCCTTGAAGTTACAGTGGAGCAGA-TTAAGTAAGA-A
1 AGTCTTATCTCC-TGAAGTTACAGTGGAGCAGACTGAAG-AAGACA
* * *
36799150 AGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGACA
1 AGTCTTAT-CTCCTGAAGTTACAGTGGAGCAGACTGAAGAAGACA
36799195 AGTCTTATCTCCCTGAAGTT
1 AGTCTTATCT-CCTGAAGTT
36799215 GCAGATTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
44 31 0.54
45 26 0.46
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
AGTCTTATCTCCTGAAGTTACAGTGGAGCAGACTGAAGAAGACA
Found at i:36800639 original size:22 final size:21
Alignment explanation
Indices: 36800592--36800641 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
36800582 CAATTACTTT
*
36800592 TTTAATTTTTTTAAATCTGACC
1 TTTAATTTTTTTAAATCCGA-C
36800614 TTTAATTTATTTTAAATTCCGA-
1 TTTAATTT-TTTTAAA-TCCGAC
36800636 TTTAAT
1 TTTAAT
36800642 CCGTTCGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 14 0.56
23 7 0.28
24 4 0.16
ACGTcount: A:0.30, C:0.10, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTAATTTTTTTAAATCCGAC
Found at i:36801085 original size:22 final size:21
Alignment explanation
Indices: 36801057--36801117 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
36801047 CTTCGTAATT
36801057 TCATTTATTATAT-TTATATTG
1 TCATTTATTATATATTATA-TG
36801078 CTCATTTATTTGATATATTATATG
1 -TCATTTA-TT-ATATATTATATG
* *
36801102 TCATTCATTATTTATT
1 TCATTTATTATATATT
36801118 TGTTCATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 6 0.18
22 9 0.26
23 8 0.24
24 6 0.18
25 5 0.15
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (21 bp):
TCATTTATTATATATTATATG
Found at i:36811621 original size:16 final size:16
Alignment explanation
Indices: 36811600--36811648 Score: 98
Period size: 16 Copynumber: 3.1 Consensus size: 16
36811590 TTCGCTGTAT
36811600 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
36811616 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
36811632 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
36811648 T
1 T
36811649 AGCAAATAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.06, G:0.37, T:0.20
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:36811901 original size:18 final size:17
Alignment explanation
Indices: 36811880--36811914 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36811870 TTATTATTAA
*
36811880 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
36811898 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
36811915 TCTTAATANN
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:36818075 original size:85 final size:85
Alignment explanation
Indices: 36817974--36818267 Score: 360
Period size: 84 Copynumber: 3.4 Consensus size: 85
36817964 TTTTTGCACC
* ** * *
36817974 CAATTGAGTACTTGAACTTTCAAAATATATCAAAAAGACCTTTAAACTTTTTCAAAAAAAGCAAT
1 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTTTTCAAAAAAAGCAAT
*
36818039 TAAGCCCCTGTTTTCCCATT
66 TAAGCCCCTGTTTTCCCACT
*
36818059 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAA-ACCCTCAAACTTTTCCAAGAAAAA-CAA
1 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTTTTCAA-AAAAAGCAA
* * **
36818122 TTAATCCCCTTTTTTTTCACT
65 TTAAGCCCCTGTTTTCCCACT
* * *
36818143 CAATTGGGTGCTTGAACTTTCAAAATGCACCAAAAAGCCCCTCAAACTTTTTCAAAAAAAGCAAT
1 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTTTTCAAAAAAAGCAAT
*
36818208 TAAGCCCCAGTTTTCCCCCCCACT
66 TAAGCCCCTGTTTT----CCCACT
* *
36818232 AAATTGGGTACTTGAA-TTGCCAAAATGCATCAAAAA
1 CAATTGGGTACTTGAACTT-TCAAAATGCATCAAAAA
36818268 AGCCCTTTGA
Statistics
Matches: 177, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
84 73 0.41
85 69 0.39
88 2 0.01
89 33 0.19
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.29
Consensus pattern (85 bp):
CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTTTTCAAAAAAAGCAAT
TAAGCCCCTGTTTTCCCACT
Found at i:36818208 original size:169 final size:172
Alignment explanation
Indices: 36817961--36818273 Score: 445
Period size: 169 Copynumber: 1.8 Consensus size: 172
36817951 AAGCTCATGT
* * * *
36817961 TTTTTTTTGCACCCAATTGAGTACTTGAACTTTCAAAATATATCAAAAAGACCTTTAAACTTTTT
1 TTTTTTTTGCACCCAATTGAGTACTTGAACTTTCAAAATACACCAAAAAGACCCTCAAACTTTTT
* * * *
36818026 CAAAAAAAGCAATTAAGCCCCTGTTTT-CCCATTCAATTGGGTACTTGAACTT-TCAAAATGCAT
66 CAAAAAAAGCAATTAAGCCCCAGTTTTCCCCACTAAATTGGGTACTTGAA-TTGCCAAAATGCAT
36818089 CAAAAAA-CCCTCAAACTTTTCCAAGAAAAACAATTAATCCCC
130 CAAAAAAGCCCTCAAACTTTTCCAAGAAAAACAATTAATCCCC
* * * * *
36818131 TTTTTTTT-CACTCAATTGGGTGCTTGAACTTTCAAAATGCACCAAAAAGCCCCTCAAACTTTTT
1 TTTTTTTTGCACCCAATTGAGTACTTGAACTTTCAAAATACACCAAAAAGACCCTCAAACTTTTT
36818195 CAAAAAAAGCAATTAAGCCCCAGTTTTCCCCCCCACTAAATTGGGTACTTGAATTGCCAAAATGC
66 CAAAAAAAGCAATTAAGCCCCAGTTTT---CCCCACTAAATTGGGTACTTGAATTGCCAAAATGC
36818260 ATCAAAAAAGCCCT
128 ATCAAAAAAGCCCT
36818274 TTGATCATTA
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
169 73 0.59
170 8 0.06
172 2 0.02
173 37 0.30
174 4 0.03
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.30
Consensus pattern (172 bp):
TTTTTTTTGCACCCAATTGAGTACTTGAACTTTCAAAATACACCAAAAAGACCCTCAAACTTTTT
CAAAAAAAGCAATTAAGCCCCAGTTTTCCCCACTAAATTGGGTACTTGAATTGCCAAAATGCATC
AAAAAAGCCCTCAAACTTTTCCAAGAAAAACAATTAATCCCC
Found at i:36818393 original size:15 final size:14
Alignment explanation
Indices: 36818369--36818398 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
36818359 ATGACATGTG
36818369 AAAAAAAAAATAAA
1 AAAAAAAAAATAAA
36818383 AAAATAAAAAATAAA
1 AAAA-AAAAAATAAA
36818398 A
1 A
36818399 GTTATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAAAAAAAATAAA
Found at i:36818427 original size:20 final size:21
Alignment explanation
Indices: 36818402--36818451 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
36818392 AATAAAAGTT
*
36818402 ATAAAAATTA-TTATATTTCA
1 ATAAAAATTATTTAAATTTCA
*
36818422 ATAAAAA-TATTTAAATTTTA
1 ATAAAAATTATTTAAATTTCA
*
36818442 TTAAAAATTA
1 ATAAAAATTA
36818452 GAAAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAAAAATTATTTAAATTTCA
Found at i:36818469 original size:23 final size:23
Alignment explanation
Indices: 36818434--36818484 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
36818424 AAAAATATTT
36818434 AAATTTTATTAAAAATTAG-AAAA
1 AAATTTTATTAAAAATT-GTAAAA
36818457 AAATTATTA-TAAAAATTGTAAAA
1 AAATT-TTATTAAAAATTGTAAAA
36818480 AAATT
1 AAATT
36818485 GTAAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 1 0.04
23 22 0.85
24 3 0.12
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
AAATTTTATTAAAAATTGTAAAA
Found at i:36818480 original size:9 final size:9
Alignment explanation
Indices: 36818462--36818564 Score: 68
Period size: 10 Copynumber: 11.1 Consensus size: 9
36818452 GAAAAAAATT
36818462 ATTATAAAA
1 ATTATAAAA
*
36818471 ATTGTAAAAAA
1 A-T-TATAAAA
*
36818482 ATTGT-AAA
1 ATTATAAAA
*
36818490 ATTTTATAAA
1 ATTATA-AAA
*
36818500 ATCATAAAA
1 ATTATAAAA
36818509 ATTAT-AAA
1 ATTATAAAA
36818517 ATATATAAAA
1 AT-TATAAAA
36818527 ATTAT-AAA
1 ATTATAAAA
*
36818535 ATTTTATAAA
1 ATTATA-AAA
* *
36818545 GTCATACAAA
1 ATTATA-AAA
36818555 ATTATAAAA
1 ATTATAAAA
36818564 A
1 A
36818565 ATGTAAAGAA
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
8 19 0.26
9 19 0.26
10 27 0.38
11 7 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (9 bp):
ATTATAAAA
Found at i:36818485 original size:11 final size:12
Alignment explanation
Indices: 36818444--36818490 Score: 55
Period size: 11 Copynumber: 4.2 Consensus size: 12
36818434 AAATTTTATT
36818444 AAAAATTAG-AA
1 AAAAATTAGTAA
* *
36818455 AAAAATTATTAT
1 AAAAATTAGTAA
36818467 AAAAATT-GTAA
1 AAAAATTAGTAA
36818478 AAAAATT-GTAA
1 AAAAATTAGTAA
36818489 AA
1 AA
36818491 TTTTATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 23 0.74
12 8 0.26
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (12 bp):
AAAAATTAGTAA
Found at i:36818499 original size:10 final size:9
Alignment explanation
Indices: 36818463--36818544 Score: 58
Period size: 9 Copynumber: 8.8 Consensus size: 9
36818453 AAAAAAATTA
36818463 TTATAAAAAT
1 TTAT-AAAAT
* *
36818473 TGTAAAAAAA
1 T-TATAAAAT
*
36818483 TTGTAAAATT
1 TTATAAAA-T
36818493 TTATAAAA-
1 TTATAAAAT
* *
36818501 TCATAAAAA
1 TTATAAAAT
36818510 TTATAAAAT
1 TTATAAAAT
* *
36818519 ATATAAAAA
1 TTATAAAAT
36818528 TTATAAAATT
1 TTATAAAA-T
36818538 TTATAAA
1 TTATAAA
36818545 GTCATACAAA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
8 7 0.13
9 26 0.47
10 20 0.36
11 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (9 bp):
TTATAAAAT
Done.