Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1199

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2384
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29


Found at i:2020 original size:22 final size:22

Alignment explanation


    Indices: 1995--2047  Score: 88
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       1985 ATTGCAGGGT

                           *      
       1995 CCAGCCCTACCTTCTTCAGGAC
          1 CCAGCCCTACCTTCTCCAGGAC

                                * 
       2017 CCAGCCCTACCTTCTCCAGGGC
          1 CCAGCCCTACCTTCTCCAGGAC

                     
       2039 CCAGCCCTA
          1 CCAGCCCTA

       2048 TGTGGTTAGT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  22   29  1.00

ACGTcount: A:0.17, C:0.49, G:0.15, T:0.19


Consensus pattern (22 bp):   
CCAGCCCTACCTTCTCCAGGAC
Done.