genome.fa.s810.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold159
Parameters: 2 7 7 80 10 50 1000
Length:  985711

Tables:   1   2   3   

This is table  2  of  3  ( 301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390266--390427	88	1.8	88	92	2	272	24	27	22	25	2.00
390447--391035	88	6.7	88	90	2	857	21	27	20	30	1.98
390447--391031	44	13.4	44	84	3	752	21	27	20	30	1.98
392320--392362	15	2.6	16	89	10	61	13	9	0	76	1.01
392344--392420	30	2.7	28	82	7	100	11	10	5	72	1.26
396557--396581	11	2.3	11	100	0	50	28	16	28	28	1.97
398388--398585	40	4.9	40	81	2	209	35	23	19	21	1.95
398421--398530	20	5.5	20	70	0	76	34	24	19	21	1.96
398389--398543	80	1.9	79	89	1	238	36	23	18	20	1.95
408796--408826	14	2.1	15	94	5	55	19	22	0	58	1.40
410676--410707	16	2.0	16	100	0	64	62	0	12	25	1.30
411539--411587	24	2.0	24	92	0	80	24	20	20	34	1.96
412099--412147	20	2.3	20	83	13	55	14	6	4	75	1.14
412769--412802	17	2.0	17	100	0	68	17	41	17	23	1.90
418282--418606	69	4.8	69	82	2	363	32	23	23	20	1.98
472658--472810	76	2.0	76	100	0	306	43	15	14	26	1.85
478239--478276	16	2.5	15	91	8	67	78	0	2	18	0.86
478366--478452	30	2.9	29	71	18	72	57	3	1	37	1.23
478367--478461	9	9.9	9	70	20	52	56	3	1	38	1.22
478380--478462	10	8.3	10	71	11	55	57	2	1	38	1.19
481997--482033	16	2.3	16	95	0	65	40	5	27	27	1.78
482046--482147	44	2.3	44	94	0	186	35	3	21	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482393--482434	22	2.0	21	90	4	66	64	4	0	30	1.14
498178--498210	13	2.6	13	90	4	50	75	0	24	0	0.80
505356--505383	2	14.0	2	100	0	56	50	0	0	50	1.00
506103--506129	7	3.9	7	100	0	54	29	0	0	70	0.88
506141--506233	9	10.2	9	69	17	50	54	3	2	39	1.28
507390--507423	14	2.5	13	90	4	50	79	0	0	20	0.73
507814--507866	27	1.9	28	96	3	99	64	22	1	11	1.36
519020--519520	254	2.0	253	93	1	869	33	22	13	30	1.92
524196--524235	20	2.0	20	85	9	55	62	12	0	25	1.30
524248--524287	21	1.9	21	94	0	71	62	22	0	15	1.32
524540--524595	18	3.1	18	78	12	62	21	1	5	71	1.15
528010--528061	23	2.3	23	93	0	86	50	15	0	34	1.45
531630--531695	33	2.0	33	90	0	105	33	25	12	28	1.92
535358--535412	20	2.9	18	79	10	65	81	5	10	1	0.92
535355--535414	8	7.8	8	72	7	52	81	5	11	1	0.91
535358--535422	30	2.2	30	85	0	85	81	7	9	1	0.93
535817--536154	42	8.1	42	83	3	387	23	21	21	34	1.97
535828--536154	126	2.6	125	87	1	449	22	21	22	33	1.97
536972--537240	147	1.8	147	84	6	375	41	3	10	44	1.56
548587--548623	16	2.3	17	86	9	51	24	5	0	70	1.08
549085--549297	109	2.0	109	86	4	306	31	16	13	38	1.87
555485--555663	95	1.9	95	95	2	324	36	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556671--556695	12	2.1	12	100	0	50	24	28	24	24	2.00
573762--573787	12	2.2	12	100	0	52	50	11	15	23	1.76
588857--588890	16	2.1	16	94	0	59	41	26	17	14	1.88
591531--591765	85	2.8	85	80	8	250	44	9	10	35	1.71
591803--592237	77	5.5	77	84	5	487	36	11	15	35	1.85
591833--592312	77	5.9	81	81	8	402	37	12	14	35	1.84
593738--593832	33	2.9	33	76	6	88	53	2	4	40	1.32
594622--594681	26	2.3	25	81	13	68	26	3	8	61	1.40
600420--602088	835	2.0	835	100	0	3338	40	15	8	35	1.78
610982--611014	12	2.8	12	82	17	50	48	18	0	33	1.48
611501--611549	17	2.9	17	81	0	62	42	18	8	30	1.79
611538--611584	17	2.8	17	87	6	60	44	14	8	31	1.76
611777--611819	20	2.2	20	100	0	86	32	34	9	23	1.87
617239--617288	7	7.5	6	87	12	55	18	6	0	76	0.99
617239--617288	14	3.7	13	82	17	66	18	6	0	76	0.99
624273--624481	104	2.0	104	99	0	409	32	13	16	37	1.88
627130--627171	17	2.4	18	84	7	52	47	14	0	38	1.44
628258--628359	37	2.8	37	78	0	105	28	12	21	37	1.90
656804--656830	14	1.9	14	100	0	54	14	25	22	37	1.93
658145--658190	22	2.1	22	84	8	58	41	2	8	47	1.46
660858--661056	30	6.7	30	77	6	154	41	14	25	19	1.88
660866--660937	29	2.4	30	86	2	92	43	13	27	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660894--661060	90	1.9	90	88	2	255	39	13	27	19	1.89
660894--661088	90	2.2	90	85	3	250	38	13	28	19	1.89
666109--666249	28	5.1	28	87	1	203	31	20	24	23	1.98
666355--666429	25	2.9	26	88	4	107	38	18	22	20	1.93
666573--667078	27	18.9	27	81	5	413	17	18	19	43	1.88
671935--671974	15	2.6	15	84	4	53	50	10	17	22	1.76
672383--672415	17	1.9	17	100	0	66	18	12	12	57	1.64
688708--688758	11	4.5	11	77	18	52	78	5	1	13	1.02
697466--697531	13	5.1	13	83	0	87	31	9	22	36	1.86
705322--705370	25	2.0	25	87	0	71	18	14	48	18	1.80
719909--719939	15	2.0	16	93	6	55	48	6	6	38	1.55
719996--720188	39	5.0	38	83	3	233	17	32	16	34	1.92
720010--720187	19	9.2	19	64	12	76	16	31	17	34	1.92
719996--720188	78	2.5	78	84	5	259	17	32	16	34	1.92
721997--722030	17	2.1	16	88	5	50	76	14	0	8	1.01
723531--723657	48	2.6	48	86	2	157	26	23	29	19	1.98
727564--727782	119	1.8	119	82	7	284	23	25	13	38	1.91
727564--727932	30	12.3	30	78	7	295	23	25	13	37	1.91
728882--729082	107	1.9	109	82	7	257	39	14	10	34	1.82
734444--734553	36	3.1	36	100	0	220	19	21	27	31	1.97
735251--735297	18	2.4	20	75	17	53	46	4	6	42	1.48
735304--735335	16	1.9	17	93	6	57	59	6	3	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735432--735487	27	2.2	26	81	12	64	44	7	3	44	1.48
735441--735492	27	2.0	28	85	11	74	40	5	5	48	1.51
735888--736008	37	3.2	37	70	23	124	42	4	6	45	1.51
735871--736045	77	2.3	77	98	1	341	44	4	4	46	1.44
736434--736514	36	2.2	37	88	2	119	7	22	9	60	1.53
736498--736542	23	2.0	23	95	0	81	8	35	11	44	1.71
744311--744357	23	2.0	23	91	0	76	44	12	34	8	1.73
748142--748206	32	2.0	32	96	0	121	24	20	6	49	1.71
758652--758676	2	12.5	2	100	0	50	48	0	52	0	1.00
760941--761037	29	3.3	31	78	10	87	29	11	21	37	1.89
760953--761107	29	5.4	28	80	6	125	25	14	22	38	1.92
760953--761104	58	2.6	58	76	11	168	25	14	23	37	1.92
762447--762484	14	2.7	14	91	0	58	31	18	10	39	1.85
766516--766607	42	2.2	42	86	3	123	22	25	22	29	1.99
768001--768115	25	4.6	25	78	4	92	29	18	24	27	1.98
770167--770283	36	3.2	36	71	7	110	38	27	16	17	1.91
770118--770298	73	2.5	73	85	1	238	37	27	14	20	1.92
770509--770537	10	3.0	10	95	5	51	37	10	0	51	1.36
783137--783198	32	1.9	32	90	0	97	64	1	1	32	1.13
783178--783258	11	7.5	11	72	20	57	61	1	2	34	1.17
783204--783276	9	7.4	9	74	19	58	69	1	1	27	1.04
783208--783258	11	4.5	11	79	11	59	64	1	1	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
783208--783258	22	2.3	22	86	10	68	64	1	1	31	1.15
783147--783247	40	2.8	38	82	11	115	63	0	1	33	1.12
783178--783287	51	2.1	53	91	5	179	62	0	2	33	1.15
783291--783315	7	3.6	7	100	0	50	88	0	0	12	0.53
783204--783315	52	2.2	50	81	13	124	69	0	2	26	1.07
784655--784721	29	2.3	29	86	0	107	29	20	16	32	1.95
788110--788177	33	2.1	33	86	8	95	19	0	22	58	1.39
788224--788272	14	3.4	14	72	5	53	48	4	12	34	1.59
798723--798847	64	2.0	64	100	0	250	37	18	16	28	1.92
798825--799437	305	2.0	305	94	0	1075	33	20	16	29	1.95

Tables:   1   2   3