Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1453

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1736
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29


Found at i:1537 original size:15 final size:15

Alignment explanation


    Indices: 1517--1567  Score: 52
    Period size: 14  Copynumber: 3.3  Consensus size: 15

       1507 AAATCCCTAA

                            
       1517 CCCTAAAT-TGAAAAT
          1 CCCTAAATCT-AAAAT

                           
       1532 CCCT-AATCTAAAAT
          1 CCCTAAATCTAAAAT

                   *         
       1546 CTCCTAAGTCTCAAAAT
          1 C-CCTAAATCT-AAAAT

                 
       1563 CCCTA
          1 CCCTA

       1568 CTGCTAGTCA


Statistics
Matches: 31,  Mismatches: 1, Indels: 7
        0.79            0.03        0.18

Matches are distributed among these distances:
  14    9  0.29
  15    8  0.26
  16    8  0.26
  17    6  0.19

ACGTcount: A:0.39, C:0.29, G:0.04, T:0.27


Consensus pattern (15 bp):   
CCCTAAATCTAAAAT
Done.