Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3211

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 469

Length: 783
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.34


Found at i:661 original size:15 final size:15

Alignment explanation


    Indices: 641--674  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        631 AATTAACCCT

                           
        641 AAATCTCAAACCCCA
          1 AAATCTCAAACCCCA

                   *      *
        656 AAATCTCTAACCCCT
          1 AAATCTCAAACCCCA

                
        671 AAAT
          1 AAAT

        675 TAACCTTAAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21


Consensus pattern (15 bp):   
AAATCTCAAACCCCA
Done.