Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1184

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2441
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.44


Found at i:1569 original size:18 final size:18

Alignment explanation


    Indices: 1548--1582  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1538 TATTCTTTTT

                              
       1548 GTTTTTCATCTTTTTTAC
          1 GTTTTTCATCTTTTTTAC

                  *  *       
       1566 GTTTTTTATGTTTTTTA
          1 GTTTTTCATCTTTTTTA

       1583 TAATTTTTTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.11, C:0.09, G:0.09, T:0.71


Consensus pattern (18 bp):   
GTTTTTCATCTTTTTTAC
Done.