Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold549
Parameters: 2 7 7 80 10 50 1000
Length:  67163

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2038--2310
43
6.3
43
79
2
289
21
17
31
29
1.96
2038--2289
129
2.0
129
84
3
328
22
17
30
28
1.97
2058--2312
86
3.0
86
88
1
359
23
17
31
27
1.97
2080--2374
86
3.4
86
81
6
312
22
18
30
28
1.97
2489--2531
22
2.0
22
95
0
77
41
27
20
9
1.83
5855--5880
13
2.0
13
100
0
52
15
30
15
38
1.88
7343--7373
3
10.3
3
100
0
62
32
0
0
67
0.91
7500--7532
2
17.5
2
87
12
52
51
0
0
48
1.00
7599--7658
26
2.3
25
80
8
66
38
10
0
51
1.35
7613--7655
12
3.4
12
78
12
50
41
11
0
46
1.40
7613--7647
14
2.5
14
85
0
52
42
8
0
48
1.33
9984--10029
23
2.0
23
82
0
56
41
10
2
45
1.51
9997--10057
31
2.0
31
83
6
79
39
13
3
44
1.60
22713--22755
18
2.2
20
88
8
63
25
2
6
65
1.30
24043--24887
296
2.8
299
75
10
765
37
13
8
40
1.76
23739--25600
840
2.2
838
79
7
1960
36
13
9
39
1.78
26682--26711
2
15.5
2
93
6
53
53
0
0
46
1.00
27841--27906
20
3.3
20
74
4
80
19
18
9
53
1.71
27836--27917
39
2.1
39
97
0
155
19
20
7
52
1.70
34269--34306
11
3.5
11
89
7
60
68
0
31
0
0.90
34332--34370
19
2.0
21
85
10
55
23
0
10
66
1.22
35017--35061
18
2.5
18
85
0
63
28
4
46
20
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36331--36405
33
2.3
33
82
8
93
0
30
0
69
0.89
36358--36497
22
6.4
22
75
14
121
0
28
0
71
0.86
36399--36499
4
26.0
4
78
15
97
0
27
0
72
0.85
36359--36497
68
2.1
67
87
6
201
0
28
0
71
0.86
36778--36818
21
2.0
21
85
9
57
26
0
7
65
1.18
36780--36832
22
2.4
23
81
12
58
26
0
5
67
1.12
42416--42461
18
2.6
18
86
6
58
13
6
8
71
1.29
42511--42536
3
8.7
3
100
0
52
34
0
0
65
0.93
45234--45281
24
2.0
24
95
0
87
45
10
12
31
1.76
51513--51554
18
2.3
19
83
8
59
54
4
9
30
1.53
54126--54152
8
3.4
8
100
0
54
11
0
11
77
0.99
56182--56269
18
5.2
17
75
12
65
47
10
11
30
1.73
56185--56253
18
3.9
17
75
7
66
52
11
10
26
1.69
56306--56518
18
11.6
18
71
14
127
44
9
14
31
1.77
57029--57067
16
2.4
16
83
8
53
0
17
10
71
1.12
57031--57091
14
4.7
13
82
17
74
0
16
11
72
1.13
57221--57276
3
18.3
3
92
3
94
0
33
1
64
1.04
57359--57409
24
2.2
23
85
3
66
11
13
5
68
1.37
57714--57876
30
5.6
29
81
5
177
38
4
21
35
1.73
57708--57876
59
2.9
58
78
7
198
39
4
20
34
1.74
58067--58406
74
4.5
74
85
5
432
33
21
18
26
1.96
58064--58406
151
2.3
148
85
4
438
33
21
18
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60957--60998
9
4.9
9
77
11
52
0
0
11
88
0.53
60956--60999
12
3.6
12
87
6
70
0
0
11
88
0.51
60957--61010
13
4.5
12
78
21
51
0
3
11
85
0.73
60953--61010
24
2.4
25
83
16
77
0
5
10
84
0.77
67010--67065
8
6.8
8
74
22
53
58
1
0
39
1.08

Tables:   1

The End!