Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2474

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 562

Length: 937
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33


Found at i:483 original size:23 final size:22

Alignment explanation


    Indices: 440--497  Score: 73
    Period size: 22  Copynumber: 2.6  Consensus size: 22

        430 AAAGGGTATC

                   * *            
        440 TACAAATTAAATC-TCTAAGAT
          1 TACAAATCATATCTTCTAAGAT

                                   
        461 TACAAAATCATATCTTCTAAGAT
          1 TAC-AAATCATATCTTCTAAGAT

                *         
        484 TACATATCATATCT
          1 TACAAATCATATCT

        498 AAGATTGCAT


Statistics
Matches: 32,  Mismatches: 3, Indels: 3
        0.84            0.08        0.08

Matches are distributed among these distances:
  21    3  0.09
  22   18  0.56
  23   11  0.34

ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36


Consensus pattern (22 bp):   
TACAAATCATATCTTCTAAGAT
Done.