Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold941

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4003
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.25

Warning! 1013 characters in sequence are not A, C, G, or T


Found at i:3519 original size:19 final size:20

Alignment explanation


    Indices: 3479--3519  Score: 57
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       3469 CGTTGGATTG

                           *    
       3479 TTTTACATTTGAGTACTTAA
          1 TTTTACATTTGAGTAATTAA

                 *              
       3499 TTTTATATTTG-GTAATTAA
          1 TTTTACATTTGAGTAATTAA

              
       3518 TT
          1 TT

       3520 GGGTAAGTTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  19    9  0.47
  20   10  0.53

ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56


Consensus pattern (20 bp):   
TTTTACATTTGAGTAATTAA
Done.