Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 130 of 131
Found at i:42888285 original size:18 final size:18
Alignment explanation
Indices: 42888264--42888299 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
42888254 CTCGATTAGC
*
42888264 CGACTGATTAACCGAATT
1 CGACCGATTAACCGAATT
*
42888282 CGACCGATTAATCGAATT
1 CGACCGATTAACCGAATT
42888300 AAGTTGATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (18 bp):
CGACCGATTAACCGAATT
Found at i:42889025 original size:22 final size:21
Alignment explanation
Indices: 42888990--42889034 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
42888980 TCTTTCTCAT
*
42888990 TCTCAAATCTCTCTCAAATTTC
1 TCTCAAATCCCTCT-AAATTTC
* *
42889012 TCTCAATTCCCTCTTAATTTC
1 TCTCAAATCCCTCTAAATTTC
42889033 TC
1 TC
42889035 ACTCAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (21 bp):
TCTCAAATCCCTCTAAATTTC
Found at i:42894730 original size:20 final size:19
Alignment explanation
Indices: 42894705--42894762 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 19
42894695 ATTGGGCAAT
42894705 AAATAATTTCAAAATTTTAA
1 AAATAATTT-AAAATTTTAA
42894725 AAATAATATTAGAAATTTTAA
1 AAATAAT-TTA-AAATTTTAA
42894746 AATATATATTTTAAAAT
1 AA-ATA-A-TTTAAAAT
42894763 AACTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
20 8 0.24
21 13 0.39
22 7 0.21
23 4 0.12
24 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
AAATAATTTAAAATTTTAA
Found at i:42894742 original size:21 final size:21
Alignment explanation
Indices: 42894716--42894755 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
42894706 AATAATTTCA
42894716 AAATTTTAAAA-ATAATATTAG
1 AAATTTTAAAATAT-ATATTAG
42894737 AAATTTTAAAATATATATT
1 AAATTTTAAAATATATATT
42894756 TTAAAATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
AAATTTTAAAATATATATTAG
Found at i:42894817 original size:20 final size:22
Alignment explanation
Indices: 42894765--42894826 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 22
42894755 TTTAAAATAA
42894765 CTAAAAAAT-TATAAAAAAAGT
1 CTAAAAAATATATAAAAAAAGT
* * *
42894786 CTAAAGATTATATACAAAAA-T
1 CTAAAAAATATATAAAAAAAGT
42894807 -TAAAAAATATATTAAAAAAA
1 CTAAAAAATATA-TAAAAAAA
42894827 CCCTAAACCC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 9 0.27
21 15 0.45
22 9 0.27
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (22 bp):
CTAAAAAATATATAAAAAAAGT
Found at i:42895878 original size:14 final size:15
Alignment explanation
Indices: 42895861--42895890 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
42895851 TATAATTTAT
42895861 AATTT-AATATTAAA
1 AATTTAAATATTAAA
42895875 AATTTAAATATTAAA
1 AATTTAAATATTAAA
42895890 A
1 A
42895891 CTTAAACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTTAAATATTAAA
Found at i:42896280 original size:35 final size:36
Alignment explanation
Indices: 42896220--42896294 Score: 93
Period size: 35 Copynumber: 2.1 Consensus size: 36
42896210 AAAAACTTTC
*
42896220 AATA-AATAAAAAATATTTTTTAAAATATT-AAAAT
1 AATATAATAAAAAATATTTTTAAAAATATTAAAAAT
* *
42896254 AATATAATATAAAAT-TTTTTAAAAAATTTTAAAAAT
1 AATATAATAAAAAATATTTTT-AAAAATATTAAAAAT
42896290 AATAT
1 AATAT
42896295 GGGCGAGTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 9 0.26
35 16 0.46
36 10 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (36 bp):
AATATAATAAAAAATATTTTTAAAAATATTAAAAAT
Found at i:42896999 original size:3 final size:3
Alignment explanation
Indices: 42896991--42897029 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
42896981 AAATATCAGA
42896991 TCT TCT TCTT TCT T-T TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
42897030 GCTGCTGCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:42905123 original size:31 final size:29
Alignment explanation
Indices: 42905080--42905146 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 29
42905070 AAATTTTAAA
*
42905080 TTAATAAAGATAAAATTGTAATTTGATCCTT
1 TTAA-AAAGATAAAATTGTAATTTAATCC-T
* * *
42905111 TTAAAAATGATAAATTTTTTATTTAATCCT
1 TTAAAAA-GATAAAATTGTAATTTAATCCT
42905141 TTAAAA
1 TTAAAA
42905147 TTTATTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
30 10 0.32
31 21 0.68
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (29 bp):
TTAAAAAGATAAAATTGTAATTTAATCCT
Found at i:42905565 original size:21 final size:21
Alignment explanation
Indices: 42905532--42905579 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
42905522 TTATCACTCA
42905532 ATTTTGATATTTTAAAATTATT
1 ATTTT-ATATTTTAAAATTATT
* * *
42905554 ATTTTATCTTTTATATTTATT
1 ATTTTATATTTTAAAATTATT
42905575 -TTTTA
1 ATTTTA
42905580 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 5 0.22
21 13 0.57
22 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTTATATTTTAAAATTATT
Found at i:42911415 original size:26 final size:26
Alignment explanation
Indices: 42911384--42911439 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
42911374 TCCATTTTTT
* * *
42911384 AATAAACACCAAAAATTTATTTTAAA
1 AATAAAAACAAAAAAATTATTTTAAA
*
42911410 AATAAAAATAAAAAAATTATTTTAAA
1 AATAAAAACAAAAAAATTATTTTAAA
42911436 AATA
1 AATA
42911440 TTTTAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (26 bp):
AATAAAAACAAAAAAATTATTTTAAA
Found at i:42914466 original size:13 final size:13
Alignment explanation
Indices: 42914448--42914473 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42914438 TTGTTCTGTA
42914448 GTCTTACGTGGCG
1 GTCTTACGTGGCG
42914461 GTCTTACGTGGCG
1 GTCTTACGTGGCG
42914474 ATTTGACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.38, T:0.31
Consensus pattern (13 bp):
GTCTTACGTGGCG
Found at i:42918296 original size:21 final size:19
Alignment explanation
Indices: 42918271--42918309 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
42918261 TAATTATACT
42918271 TTTATTAATCATGTATTTTTA
1 TTTATTAAT-AT-TATTTTTA
*
42918292 TTTATTTATATTATTTTT
1 TTTATTAATATTATTTTT
42918310 CTCAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 2 0.12
21 8 0.47
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTATTAATATTATTTTTA
Found at i:42926685 original size:169 final size:170
Alignment explanation
Indices: 42926395--42926733 Score: 671
Period size: 169 Copynumber: 2.0 Consensus size: 170
42926385 CTATAAATAT
42926395 AAAATTTTAATTTAATCCTTTAAAAATTATAAATATATAAAATATTAAAATAAAAAATTTAATTT
1 AAAATTTTAATTTAATCCTTTAAAAATTATAAATATATAAAATATTAAAATAAAAAATTTAATTT
42926460 CGACCCTAAAAAAATTCCTAGTTTCATCCCTATACAGAATCGTATATGTATAAATAATCAGTGCA
66 CGACCCTAAAAAAATTCCTAGTTTCATCCCTATACAGAATCGTATATGTATAAATAATCAGTGCA
42926525 TCAAATGTAAATATATTAAACAAACTTACGTGTGAGGCGA
131 TCAAATGTAAATATATTAAACAAACTTACGTGTGAGGCGA
42926565 AAAATTTTAA-TTAATCCTTTAAAAATTATAAATATATAAAATATTAAAATAAAAAATTTAATTT
1 AAAATTTTAATTTAATCCTTTAAAAATTATAAATATATAAAATATTAAAATAAAAAATTTAATTT
42926629 CGACCCTAAAAAAATTCCTAGTTTCATCCCTATACAGAATCGTATATGTATAAATAATCAGTGCA
66 CGACCCTAAAAAAATTCCTAGTTTCATCCCTATACAGAATCGTATATGTATAAATAATCAGTGCA
42926694 TCAAATGTAAATATATTAAACAAACTTACGTGTGAGGCGA
131 TCAAATGTAAATATATTAAACAAACTTACGTGTGAGGCGA
42926734 CGAAATAAGC
Statistics
Matches: 169, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
169 159 0.94
170 10 0.06
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (170 bp):
AAAATTTTAATTTAATCCTTTAAAAATTATAAATATATAAAATATTAAAATAAAAAATTTAATTT
CGACCCTAAAAAAATTCCTAGTTTCATCCCTATACAGAATCGTATATGTATAAATAATCAGTGCA
TCAAATGTAAATATATTAAACAAACTTACGTGTGAGGCGA
Found at i:42935290 original size:19 final size:17
Alignment explanation
Indices: 42935257--42935291 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
42935247 AATATTGTTT
42935257 CTTTTTATAATTTTATA
1 CTTTTTATAATTTTATA
42935274 CTTTTTAATACATTTTAT
1 CTTTTT-ATA-ATTTTAT
42935292 TTTTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.63
Consensus pattern (17 bp):
CTTTTTATAATTTTATA
Found at i:42940371 original size:23 final size:23
Alignment explanation
Indices: 42940345--42940391 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
42940335 TTATATTTTG
42940345 AAATAAATATTTTATATAAAATT
1 AAATAAATATTTTATATAAAATT
* * *
42940368 AAATTAATATTTTATTTTAAATT
1 AAATAAATATTTTATATAAAATT
42940391 A
1 A
42940392 TTTCAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATAAATATTTTATATAAAATT
Found at i:42940748 original size:41 final size:41
Alignment explanation
Indices: 42940676--42941085 Score: 416
Period size: 41 Copynumber: 10.1 Consensus size: 41
42940666 AAAACAGGCT
* * * * *
42940676 TTTAGTGGCATTTTTGATAAAGTGCCGCTAATGCTTAGGCC
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
* *
42940717 TTTAACGGCGTTTTTGATAAAGCGCCCCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
* ** * * **
42940758 TTTAGCGGTGTTTTTGAGGAAGCACCGCTAATGGTCA-GTA
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
*
42940798 TTTAGCGGCGTTTTTGTTAAAGCGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
* * * *
42940839 TTTAGCGGTGTTTTCGATAAAGCACCGCTGATGCTCAGGGC
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
** * *
42940880 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAAGGT
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
* * *
42940921 TTTAGCGGCGTTTTTG-GAAAGCGCTGCTAATGCTCAGGGA
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
* * *
42940961 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGATCAGGGC
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
* * * * **
42941002 TTTAGCGGCATTTTTGATTAAGCGACGCTAATTCTCA--TT
1 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
* * * * *
42941041 TTTAGCGGCATTTTCTGA-AAAGTGCCACTAATACTCAGGGA
1 TTTAGCGGCGTTTT-TGATAAAGCGCCGCTAATGCTCAGGGC
42941082 TTTA
1 TTTA
42941086 AAATAATTTA
Statistics
Matches: 304, Mismatches: 60, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
39 28 0.09
40 71 0.23
41 205 0.67
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
Found at i:42940829 original size:81 final size:82
Alignment explanation
Indices: 42940676--42941018 Score: 402
Period size: 81 Copynumber: 4.2 Consensus size: 82
42940666 AAAACAGGCT
* * * ** * ** * *
42940676 TTTAGTGGCATTTTTGATAAAGTGCCGCTAATGCTTAGGCCTTTAACGGCGTTTTTGATAAAGCG
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCG
*
42940741 CCCCTAATGCTCAGGGC
66 CCGCTAATGCTCAGGGC
* * * * **
42940758 TTTAGCGGTGTTTTTGAGGAAGCACCGCTAATGGTCA-GTATTTAGCGGCGTTTTTGTTAAAGCG
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCG
42940822 CCGCTAATGCTCAGGGC
66 CCGCTAATGCTCAGGGC
* * * * * *
42940839 TTTAGCGGTGTTTTCGATAAAGCACCGCTGATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCG
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCG
* *
42940904 CCGCTAATGCTCAAGGT
66 CCGCTAATGCTCAGGGC
* * *
42940921 TTTAGCGGCGTTTTTG-GAAAGCGCTGCTAATGCTCAGGGATTTAGCGGCGTTTTTAAGAAAGCG
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCG
*
42940985 CCGCTAATGATCAGGGC
66 CCGCTAATGCTCAGGGC
*
42941002 TTTAGCGGCATTTTTGA
1 TTTAGCGGCGTTTTTGA
42941019 TTAAGCGACG
Statistics
Matches: 221, Mismatches: 38, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
81 141 0.64
82 80 0.36
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCG
CCGCTAATGCTCAGGGC
Found at i:42941025 original size:122 final size:121
Alignment explanation
Indices: 42940675--42941085 Score: 466
Period size: 122 Copynumber: 3.4 Consensus size: 121
42940665 CAAAACAGGC
* * * ** *
42940675 TTTTAGTGGCATTTTTGATAAAGTGCCGCTAATGCTTAGGCCTTTAACGGCGTTTTTGATAAAGC
1 TTTTAGCGGCATTTTTGATAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGATAAAGC
* * * * *
42940740 GCCCCTAATGCTCAGGGCTTTAGCGGTGTTTTTGAGGAAGCACCGCTAATGGTCAG
66 GCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAG
* * * * *
42940796 TATTTAGCGGCGTTTTTGTTAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGTGTTTTCGATAAAG
1 T-TTTAGCGGCATTTTTGATAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGATAAAG
* * *
42940861 CACCGCTGATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAAGG
65 CGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC-A-G
* * * * *
42940920 TTTTAGCGGCGTTTTTG-GAAAGCGCTGCTAATGCTCAGGGATTTAGCGGCGTTTTTAAGAAAGC
1 TTTTAGCGGCATTTTTGATAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGATAAAGC
* * ** * * *
42940984 GCCGCTAATGATCAGGGCTTTAGCGGCATTTTTGATTAAGCGACGCTAATTCTCAT
66 GCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAG
* * *
42941040 TTTTAGCGGCATTTTCTGA-AAAGTGCCACTAATACTCAGGGATTTA
1 TTTTAGCGGCATTTT-TGATAAAGCGCCGCTAATGCTCAGGGATTTA
42941086 AAATAATTTA
Statistics
Matches: 246, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
120 14 0.06
121 27 0.11
122 186 0.76
123 17 0.07
124 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (121 bp):
TTTTAGCGGCATTTTTGATAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGATAAAGC
GCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAG
Found at i:42941072 original size:39 final size:39
Alignment explanation
Indices: 42941002--42941077 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
42940992 TGATCAGGGC
* * *
42941002 TTTAGCGGCATTTTTGATTAAGCGACGCTAATTCTCATT
1 TTTAGCGGCATTTTTGATAAAGCGACACTAATACTCATT
* *
42941041 TTTAGCGGCATTTTCTGA-AAAGTGCCACTAATACTCA
1 TTTAGCGGCATTTT-TGATAAAGCGACACTAATACTCA
42941078 GGGATTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.90
40 3 0.10
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (39 bp):
TTTAGCGGCATTTTTGATAAAGCGACACTAATACTCATT
Found at i:42941279 original size:14 final size:14
Alignment explanation
Indices: 42941260--42941299 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
42941250 TATCACTATA
*
42941260 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
42941274 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
*
42941288 GTTTAGAGTTTA
1 GTTTAGGGTTTA
42941300 AGACTTAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:42941343 original size:22 final size:21
Alignment explanation
Indices: 42941318--42941365 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
42941308 TTGTTACCAT
*
42941318 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGGTTATGGATTAT-GG
* *
42941340 TTTAGGGGTTATGGTTTATGG
1 TTTAAGGGTTATGGATTATGG
42941361 TTTAA
1 TTTAA
42941366 AGGCTGGGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (21 bp):
TTTAAGGGTTATGGATTATGG
Found at i:42941679 original size:14 final size:15
Alignment explanation
Indices: 42941649--42941686 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
42941639 AATAATTATA
42941649 TATGGATTTAGGAAT
1 TATGGATTTAGGAAT
*
42941664 TATGGA-TTAGGGAT
1 TATGGATTTAGGAAT
42941678 TATGG-TTTA
1 TATGGATTTA
42941687 AGGGTTGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGAAT
Found at i:42941964 original size:14 final size:14
Alignment explanation
Indices: 42941945--42941972 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
42941935 AATGCAAAAT
42941945 TTTAAATAATATTA
1 TTTAAATAATATTA
42941959 TTTAAATAATATTA
1 TTTAAATAATATTA
42941973 ATAATGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTAAATAATATTA
Found at i:42942209 original size:83 final size:83
Alignment explanation
Indices: 42942113--42942342 Score: 345
Period size: 83 Copynumber: 2.8 Consensus size: 83
42942103 GCGTTTGATC
* *
42942113 AAAAACGCCGCAAAAAATATATTTAAAATTTAACCAAACGGCGCCATTTCATTGACGAATTAAAT
1 AAAAACGCCGCAAAAAATATATTTAAAATTTAACAAAACGGCGCCGTTTCATTGACGAATTAAAT
*
42942178 ATTAGTGGCGTTTTGTAT
66 ATTAGTGGCGTTTTCTAT
* * *
42942196 ACAAACGCCGCAAAAAATATA-TTAAGAATTTAACAAAATGGCGCCGTTTCATTGATGAATTAAA
1 AAAAACGCCGCAAAAAATATATTTAA-AATTTAACAAAACGGCGCCGTTTCATTGACGAATTAAA
42942260 TATTAGTGGCGTTTTCTAT
65 TATTAGTGGCGTTTTCTAT
* * ** *
42942279 AAAAACGCCGCAAAAAATACATTAAAAATTTAACAAAACGGCGATGTTTCATTGACTAATTAAA
1 AAAAACGCCGCAAAAAATATATTTAAAATTTAACAAAACGGCGCCGTTTCATTGACGAATTAAA
42942343 GGAAAAGTTG
Statistics
Matches: 131, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
82 4 0.03
83 124 0.95
84 3 0.02
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (83 bp):
AAAAACGCCGCAAAAAATATATTTAAAATTTAACAAAACGGCGCCGTTTCATTGACGAATTAAAT
ATTAGTGGCGTTTTCTAT
Found at i:42949812 original size:225 final size:225
Alignment explanation
Indices: 42949421--42949872 Score: 904
Period size: 225 Copynumber: 2.0 Consensus size: 225
42949411 GATTCAAAAT
42949421 CATCAAACATCATTTTAGGTTTATCTCCATAAAATGACTCAAAAGTTTCTTCTACTAATGACTCA
1 CATCAAACATCATTTTAGGTTTATCTCCATAAAATGACTCAAAAGTTTCTTCTACTAATGACTCA
42949486 ATTATGTCGACATGGTTTACGTTCAAAATTTCACTAGGATGACTAATAGCACCATAAACGTTATT
66 ATTATGTCGACATGGTTTACGTTCAAAATTTCACTAGGATGACTAATAGCACCATAAACGTTATT
42949551 TTTGGTTCCAATACTAAGTTCCATCCTTGTAAGATACCTCACGGCAAGAGGGAAATTTCCTGATG
131 TTTGGTTCCAATACTAAGTTCCATCCTTGTAAGATACCTCACGGCAAGAGGGAAATTTCCTGATG
42949616 TACACAATGCTCTAATCACTTGATGTGAAG
196 TACACAATGCTCTAATCACTTGATGTGAAG
42949646 CATCAAACATCATTTTAGGTTTATCTCCATAAAATGACTCAAAAGTTTCTTCTACTAATGACTCA
1 CATCAAACATCATTTTAGGTTTATCTCCATAAAATGACTCAAAAGTTTCTTCTACTAATGACTCA
42949711 ATTATGTCGACATGGTTTACGTTCAAAATTTCACTAGGATGACTAATAGCACCATAAACGTTATT
66 ATTATGTCGACATGGTTTACGTTCAAAATTTCACTAGGATGACTAATAGCACCATAAACGTTATT
42949776 TTTGGTTCCAATACTAAGTTCCATCCTTGTAAGATACCTCACGGCAAGAGGGAAATTTCCTGATG
131 TTTGGTTCCAATACTAAGTTCCATCCTTGTAAGATACCTCACGGCAAGAGGGAAATTTCCTGATG
42949841 TACACAATGCTCTAATCACTTGATGTGAAG
196 TACACAATGCTCTAATCACTTGATGTGAAG
42949871 CA
1 CA
42949873 GCAGGACTAC
Statistics
Matches: 227, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
225 227 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (225 bp):
CATCAAACATCATTTTAGGTTTATCTCCATAAAATGACTCAAAAGTTTCTTCTACTAATGACTCA
ATTATGTCGACATGGTTTACGTTCAAAATTTCACTAGGATGACTAATAGCACCATAAACGTTATT
TTTGGTTCCAATACTAAGTTCCATCCTTGTAAGATACCTCACGGCAAGAGGGAAATTTCCTGATG
TACACAATGCTCTAATCACTTGATGTGAAG
Found at i:42951322 original size:7 final size:7
Alignment explanation
Indices: 42951310--42951345 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
42951300 AAGAAAGAAA
42951310 AAAATAT
1 AAAATAT
42951317 AAAATAT
1 AAAATAT
42951324 AAAATAT
1 AAAATAT
42951331 -AAATAT
1 AAAATAT
42951337 -AAATAT
1 AAAATAT
42951343 AAA
1 AAA
42951346 TAAAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.43
7 16 0.57
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATAT
Found at i:42951329 original size:14 final size:14
Alignment explanation
Indices: 42951310--42951345 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
42951300 AAGAAAGAAA
42951310 AAAATATAAAATAT
1 AAAATATAAAATAT
42951324 AAAATAT-AAATAT
1 AAAATATAAAATAT
42951337 -AAATATAAA
1 AAAATATAAA
42951346 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.29
13 8 0.38
14 7 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATATAAAATAT
Found at i:42951336 original size:6 final size:6
Alignment explanation
Indices: 42951311--42951356 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
42951301 AGAAAGAAAA
42951311 AAATAT AAAATAT AAAATAT AAATAT AAATAT AAATA- AAATA- AAAT
1 AAATAT -AAATAT -AAATAT AAATAT AAATAT AAATAT AAATAT AAAT
42951357 TTGATTGCCT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 9 0.23
6 17 0.44
7 13 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (6 bp):
AAATAT
Found at i:42956348 original size:12 final size:13
Alignment explanation
Indices: 42956324--42956355 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
42956314 GCTGAAATTA
42956324 AATC-TAACTAAT
1 AATCTTAACTAAT
42956336 AATCTTAAC-AAT
1 AATCTTAACTAAT
42956348 AATCTTAA
1 AATCTTAA
42956356 TAAAATTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (13 bp):
AATCTTAACTAAT
Found at i:42960091 original size:12 final size:13
Alignment explanation
Indices: 42960067--42960098 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
42960057 GCTGAAATTA
42960067 AATC-TAACTAAT
1 AATCTTAACTAAT
42960079 AATCTTAAC-AAT
1 AATCTTAACTAAT
42960091 AATCTTAA
1 AATCTTAA
42960099 TAAAATTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (13 bp):
AATCTTAACTAAT
Found at i:42960445 original size:87 final size:87
Alignment explanation
Indices: 42960349--42961063 Score: 1430
Period size: 87 Copynumber: 8.2 Consensus size: 87
42960339 TGAACTTTAT
42960349 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42960414 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42960436 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42960501 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42960523 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42960588 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42960610 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42960675 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42960697 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42960762 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42960784 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42960849 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42960871 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42960936 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42960958 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
1 ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
42961023 AAATAATTATATTCAATGATTA
66 AAATAATTATATTCAATGATTA
42961045 ATTTTTACTAATATATCAA
1 ATTTTTACTAATATATCAA
42961064 ATAGTTTTAT
Statistics
Matches: 628, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 628 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.39
Consensus pattern (87 bp):
ATTTTTACTAATATATCAACAGAAATAATGAATTTTCAAAAATTAAAGCTTATTATTATTAAACA
AAATAATTATATTCAATGATTA
Found at i:42965771 original size:6 final size:6
Alignment explanation
Indices: 42965762--42965802 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
42965752 AGGAATTTAT
42965762 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
42965803 TTGTGTTGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:42967692 original size:12 final size:12
Alignment explanation
Indices: 42967677--42967706 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
42967667 AGGAAGGGGT
42967677 AGAGGTAGAGGC
1 AGAGGTAGAGGC
*
42967689 AGAGGCAGAGGC
1 AGAGGTAGAGGC
42967701 AGAGGT
1 AGAGGT
42967707 TCTAGCGGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.33, C:0.10, G:0.50, T:0.07
Consensus pattern (12 bp):
AGAGGTAGAGGC
Found at i:42980143 original size:31 final size:30
Alignment explanation
Indices: 42980078--42980144 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 30
42980068 ATAAATTATT
* ** *
42980078 AATTATAAAATAAATAAAATTATTTAATTT
1 AATTATAAAATAAATAAAACTATAAAATTG
42980108 AATTATGAAAAT-AATGAAAACTATAAAATTG
1 AATTAT-AAAATAAAT-AAAACTATAAAATTG
42980139 AATTAT
1 AATTAT
42980145 TAATGTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
30 9 0.29
31 22 0.71
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (30 bp):
AATTATAAAATAAATAAAACTATAAAATTG
Found at i:42980537 original size:14 final size:15
Alignment explanation
Indices: 42980514--42980542 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
42980504 TTTGAGTAAT
42980514 TTTTTACTTTTTTTC
1 TTTTTACTTTTTTTC
42980529 TTTTT-CTTTTTTTC
1 TTTTTACTTTTTTTC
42980543 ATTCTCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTACTTTTTTTC
Found at i:42982593 original size:7 final size:7
Alignment explanation
Indices: 42982581--42982609 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
42982571 ATAATTTATT
42982581 TGTTTTA
1 TGTTTTA
42982588 TGTTTTA
1 TGTTTTA
42982595 TGTTTTA
1 TGTTTTA
42982602 TGTTTTA
1 TGTTTTA
42982609 T
1 T
42982610 TAATAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (7 bp):
TGTTTTA
Found at i:42987157 original size:30 final size:30
Alignment explanation
Indices: 42987123--42987182 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
42987113 TGTTTTATTC
* *
42987123 TTAATTTTGTT-ATTATTTTAAAGGCATTTG
1 TTAATTTTGTTAATT-TCTTAAAAGCATTTG
42987153 TTAATTTTGTTAATTTCTTAAAAGCATTTG
1 TTAATTTTGTTAATTTCTTAAAAGCATTTG
42987183 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.28, C:0.05, G:0.12, T:0.55
Consensus pattern (30 bp):
TTAATTTTGTTAATTTCTTAAAAGCATTTG
Found at i:42988242 original size:170 final size:170
Alignment explanation
Indices: 42987708--42988355 Score: 800
Period size: 170 Copynumber: 3.8 Consensus size: 170
42987698 ATATTTCAAG
* * * * * * *
42987708 GAAAGAAAATGAACTAATATTTTATGTATTGTCGGTACATAAGCTTCATGCATTA-CAAGTGAAT
1 GAAAGAAAATAAAATAATATTTGATGCATCGTCGGGACATAAGTTTCATGCATTATC-AGTGAAT
* ** * * *
42987772 AATAACATC-AGTTAAATTTTAGATACATGTTAGATTTAAAAAATTAGGGTTTTTGGTTGAATTT
65 AATAACATCGA-TTAAATTTTAGATATATGCCAGTTTTAAAAAATTAGGGTTTTGGGCTGAATTT
* * * * * *
42987836 TGCAATATTTAGAGAAATAGA-TCGGTTCTGGAAAGAGAAAGA
129 TGCGATATTTAGAGAAATAGACT-GATTTTGGGAAGAAAAATA
* * *
42987878 GAAATAAAATAAAATAAAATTTGATGCATCGTCGGGGCATAAGTTTCATGCATTATCAGTGAATA
1 GAAAGAAAATAAAATAATATTTGATGCATCGTCGGGACATAAGTTTCATGCATTATCAGTGAATA
* * * *
42987943 ATAATATCAATTAAATTTTAGATATATGCCAGTTTT-AAAAATTAGGGTTTTGAGTTGAATTTTG
66 ATAACATCGATTAAATTTTAGATATATGCCAGTTTTAAAAAATTAGGGTTTTGGGCTGAATTTTG
* * * ** * *
42988007 TGATATTTGGGGAAATAGACCAATCTTGGGAAGATAAATA
131 CGATATTTAGAGAAATAGACTGATTTTGGGAAGAAAAATA
* * * *
42988047 GAAAGAAAATAAAATAATATTTGATGCATCATCGGGGCATAAGTTTAATGCATTATTAGTGAATA
1 GAAAGAAAATAAAATAATATTTGATGCATCGTCGGGACATAAGTTTCATGCATTATCAGTGAATA
42988112 ATAACATCGATTAAATTTTAGATATATGCCAGTTTTAAAAAATTAGGGTTTTGGGCTGAATTTTG
66 ATAACATCGATTAAATTTTAGATATATGCCAGTTTTAAAAAATTAGGGTTTTGGGCTGAATTTTG
* *
42988177 CGATATTTTGATAAATAGACTGATTTTGGGAAGAAAAATA
131 CGATATTTAGAGAAATAGACTGATTTTGGGAAGAAAAATA
** * * *
42988217 GAAAGAAAATAAAATAATATTTGATGCATTTTCGGTATATAAGTTTCATGCATTATCAATGAATA
1 GAAAGAAAATAAAATAATATTTGATGCATCGTCGGGACATAAGTTTCATGCATTATCAGTGAATA
* * *
42988282 ATAACATCGGTTAAATTTTAAATATATGTCAGTTTTAAAAAATTAGGGTTTTGGGCTGAATTTTG
66 ATAACATCGATTAAATTTTAGATATATGCCAGTTTTAAAAAATTAGGGTTTTGGGCTGAATTTTG
* *
42988347 TGAAATTTA
131 CGATATTTA
42988356 AGGAAATGGT
Statistics
Matches: 414, Mismatches: 60, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
169 147 0.36
170 265 0.64
171 2 0.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.35
Consensus pattern (170 bp):
GAAAGAAAATAAAATAATATTTGATGCATCGTCGGGACATAAGTTTCATGCATTATCAGTGAATA
ATAACATCGATTAAATTTTAGATATATGCCAGTTTTAAAAAATTAGGGTTTTGGGCTGAATTTTG
CGATATTTAGAGAAATAGACTGATTTTGGGAAGAAAAATA
Found at i:42993198 original size:15 final size:14
Alignment explanation
Indices: 42993178--42993231 Score: 63
Period size: 15 Copynumber: 3.7 Consensus size: 14
42993168 GCAACTGCAT
42993178 ATATTTAAATATTTA
1 ATATTTAAAT-TTTA
42993193 ATATTTAAATTTGTA
1 ATATTTAAATTT-TA
* * *
42993208 TTAATTATATTTTA
1 ATATTTAAATTTTA
42993222 ATATTTAAAT
1 ATATTTAAAT
42993232 ATAATTTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
14 11 0.34
15 21 0.66
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (14 bp):
ATATTTAAATTTTA
Found at i:42993229 original size:18 final size:19
Alignment explanation
Indices: 42993208--42993261 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
42993198 TAAATTTGTA
42993208 TTAATTATATTTTA-ATAT
1 TTAATTATATTTTATATAT
* *
42993226 TTAAATATAATTTATATAT
1 TTAATTATATTTTATATAT
* *
42993245 TCAAATTAAATTTTATA
1 T-TAATTATATTTTATA
42993262 GACAATTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 12 0.43
19 5 0.18
20 11 0.39
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAATTATATTTTATATAT
Found at i:42996351 original size:87 final size:87
Alignment explanation
Indices: 42996205--42996549 Score: 467
Period size: 87 Copynumber: 4.0 Consensus size: 87
42996195 TGTTAATCTG
** *
42996205 ATTTCCATTTTTGAAATGATTTTCTTCACGGCGTGCG-TAACTTACATCATGTTTATAAATTTAC
1 ATTTCCATTTTTGAAATGATTTTCTTCGTGGCATGCGTTAA-TTACATCATGTTTATAAATTTAC
* *
42996269 AAATGAGGCCAAGCCCGAAAGGA
65 AAACGAGCCCAAGCCCGAAAGGA
* * ***
42996292 ATTTCCATTTTTGAAATGATTTTCTTCGTGGCATGTGATAATTACATCATGTTTATAAATTTTTG
1 ATTTCCATTTTTGAAATGATTTTCTTCGTGGCATGCGTTAATTACATCATGTTTATAAATTTACA
* * *
42996357 AACAAGCCCAAGCCTGAAAGGG
66 AACGAGCCCAAGCCCGAAAGGA
* ** * *
42996379 ATTTCCATTTTTGAAATGATTTTCTTTGTGGCATTTGTTAATTACATCATGTTTATAAGTTTACG
1 ATTTCCATTTTTGAAATGATTTTCTTCGTGGCATGCGTTAATTACATCATGTTTATAAATTTACA
* * *
42996444 AACGGGGCCAAGCCCGAAAGGT
66 AACGAGCCCAAGCCCGAAAGGA
*
42996466 ATTTCCATTTTTGAAATGATTTTCTTTGTGGCATGCGTTAATTACATCATGTTTATAAATTTACA
1 ATTTCCATTTTTGAAATGATTTTCTTCGTGGCATGCGTTAATTACATCATGTTTATAAATTTACA
*
42996531 AATGAGCCCAAGCCCGAAA
66 AACGAGCCCAAGCCCGAAA
42996550 CACTGTTGCC
Statistics
Matches: 227, Mismatches: 30, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
87 224 0.99
88 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (87 bp):
ATTTCCATTTTTGAAATGATTTTCTTCGTGGCATGCGTTAATTACATCATGTTTATAAATTTACA
AACGAGCCCAAGCCCGAAAGGA
Found at i:42998422 original size:19 final size:19
Alignment explanation
Indices: 42998398--42998434 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
42998388 ATTTTTTTTC
*
42998398 CTTTTACTTCTCTCCAAAG
1 CTTTTACTTCCCTCCAAAG
*
42998417 CTTTTATTTCCCTCCAAA
1 CTTTTACTTCCCTCCAAA
42998435 CCTAAGAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.32, G:0.03, T:0.43
Consensus pattern (19 bp):
CTTTTACTTCCCTCCAAAG
Found at i:43005531 original size:88 final size:88
Alignment explanation
Indices: 43005410--43005595 Score: 248
Period size: 88 Copynumber: 2.1 Consensus size: 88
43005400 GGTGAAACTT
* *
43005410 CAGCCTTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAAAT-AGCAGATCTTGTCTTCCTGTATT
1 CAGCCTTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAAATGA-CAGATCTTGCCTTCCTGTACT
43005474 GGCAGCAAAGAAGATCGAAGATAC
65 GGCAGCAAAGAAGATCGAAGATAC
* * * * *
43005498 CAGCCTTTTCTCCTTGGGTAGCAGTGGAGTAGGTTGAAAATGACAGATCTTGCCTTCCTGTACTG
1 CAGCCTTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAAATGACAGATCTTGCCTTCCTGTACTG
* * *
43005563 GCGGCGAAGCAGATCGAAGATAC
66 GCAGCAAAGAAGATCGAAGATAC
* *
43005586 CCGTCTTATC
1 CAGCCTTATC
43005596 GTCTTGACGT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
88 83 0.99
89 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (88 bp):
CAGCCTTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAAATGACAGATCTTGCCTTCCTGTACTG
GCAGCAAAGAAGATCGAAGATAC
Found at i:43005825 original size:50 final size:50
Alignment explanation
Indices: 43005766--43005861 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
43005756 TCCTATCTCT
**
43005766 TTGGCATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTC
1 TTGGCATTGCAACGAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTC
* * ** *
43005816 TTGGCATTGCAGCGGAGCAGATTGAAGCCACGACGGCGGATCTTAT
1 TTGGCATTGCAACGAAAAAGATTGAAGCCACAACGGCGGATCTTAT
43005862 CTCCCTGGTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (50 bp):
TTGGCATTGCAACGAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTC
Found at i:43005890 original size:167 final size:167
Alignment explanation
Indices: 43005605--43006018 Score: 508
Period size: 167 Copynumber: 2.5 Consensus size: 167
43005595 CGTCTTGACG
* * * * *
43005605 TTACAATGGAAAAGATTGAAGCCACAACGGCAGATTTTATTTTCCTGGAGTCGCAGCGGAATAGA
1 TTACAAAGAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTCCTGGAGTCGCAGCGGAACAGA
* *
43005670 TTGAAGCCACGATGGCAAATCTTATCTCTCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCAG
66 TTGAAGCCACGACGGCAAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCAG
* *
43005735 ATTAAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCA
131 ATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTAGCA
* ** * * *
43005772 TTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTCTTGGCA-TTGCAGCGGAGCAG
1 TTACAAAGAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTCCTGG-AGTCGCAGCGGAACAG
** * **
43005836 ATTGAAGCCACGACGGCGGATCTTATCTCCCTGGTGTTAAGGCTTGGATTAGCTGAAGTGGAGTG
65 ATTGAAGCCACGACGGCAAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCA
* * *
43005901 GATTGAAGCTGTGGGCAGTAAATTCTATCTCTTTAGCA
130 GATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTAGCA
* * * * * * * *
43005939 TTACAAAGGAAAAGATTGAAGCCACAACAGCGGATCTTACTTCCCTGGCGGT-GTAGTGGAACAA
1 TTACAAAGAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTCCTGG-AGTCGCAGCGGAACAG
*
43006003 ATTGAAGCTACGACGG
65 ATTGAAGCCACGACGG
43006019 TGGATCTGGT
Statistics
Matches: 210, Mismatches: 35, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
167 208 0.99
168 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (167 bp):
TTACAAAGAAAAAGATTGAAGCCACAACGGCGGATCTTATTTTCCTGGAGTCGCAGCGGAACAGA
TTGAAGCCACGACGGCAAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCAG
ATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTAGCA
Found at i:43006206 original size:50 final size:50
Alignment explanation
Indices: 43005946--43006526 Score: 275
Period size: 50 Copynumber: 11.6 Consensus size: 50
43005936 GCATTACAAA
* * * *
43005946 GGAAAAGATTGAAGCCACAACAGCGGATCTTACTTCCCTGGCGGTGTAGT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAGT
* * * *** * *
43005996 GGAACAA-ATTGAAGCTACGACGGTGGATCTGGTTTCCCT-GACATTGCAAAT
1 GGAA-AAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAG-CAGTGC-AGT
** * * *
43006047 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAGT
* * * * ** *** * * *
43006097 GGAACAGATAG-AGCTACGATTGCGGATCTGGTTTCCC-CGACATTGCAAT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAG-CAGTGCAGT
* * * * *
43006146 -TAAAAGGATTGAAGCCACAATGGCGGATCTTACTCCCCTAGCGGTGTAGT
1 GGAAAA-GATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAGT
* * * * * * * *
43006196 GGAACAGATTGAAGTCACGACGACGGATC-TAGTTTCCT-GACATTGCAATT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAG-CAGTGC-AGT
* * *
43006246 TGAAAAGATTGAAGCCATAACGGTGGATCTTACTTCCCTAGCAGTGCAGT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAGT
* * * * * *** * * *
43006296 GGAACAGAATGAAGCTACGACGGCAGATCTGGTTTCCC-CGACA-TCGTAAT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAG-CAGT-GCAGT
** * *
43006346 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCCTAGCGGTGCAGT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAGT
* * * * *** * * *
43006396 GGAACAGATTGAAGCTACGATGGTAAATCTTATTTCCC-AGACATTGCAAT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAG-CAGTGCAGT
* * * * *
43006446 -TAAAAGGATTGAAGCCACAACGACGGATCTTACTTCCCTGGCGGTGTAGT
1 GGAAAA-GATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAGT
* * * *
43006496 GGAATAGATTGAAGTCACAATGGCGAATCTT
1 GGAAAAGATTGAAGCCACAACGGCGGATCTT
43006527 GTTTCCCCGA
Statistics
Matches: 369, Mismatches: 140, Indels: 44
0.67 0.25 0.08
Matches are distributed among these distances:
48 5 0.01
49 45 0.12
50 260 0.70
51 57 0.15
52 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (50 bp):
GGAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCAGTGCAGT
Found at i:43006278 original size:100 final size:99
Alignment explanation
Indices: 43005948--43006559 Score: 746
Period size: 100 Copynumber: 6.1 Consensus size: 99
43005938 ATTACAAAGG
* * *
43005948 AAAAGATTGAAGCCACAACAGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTA
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTA
* *
43006013 CGACGGTGGATCTGGTTTCCCTGACATTGCAAATT
66 CGACGGCGGATCTGGTTTCCCCGACATTGC-AATT
* *
43006048 AAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATAG-AGCT
1 -AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCT
**
43006112 ACGATTGCGGATCTGGTTTCCCCGACATTGCAATT
65 ACGACGGCGGATCTGGTTTCCCCGACATTGCAATT
* *
43006147 AAAAGGATTGAAGCCACAATGGCGGATCTTACTCCCCTAGCGGTGTAGTGGAACAGATTGAAG-T
1 AAAA-GATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCT
* * *
43006211 CACGACGACGGATCTAGTTT-CCTGACATTGCAATTT
65 -ACGACGGCGGATCTGGTTTCCCCGACATTGCAA-TT
* * * * *
43006247 GAAAAGATTGAAGCCATAACGGTGGATCTTACTTCCCTAGCAGTGCAGTGGAACAGAATGAAGCT
1 -AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCT
* * *
43006312 ACGACGGCAGATCTGGTTTCCCCGACATCGTAATT
65 ACGACGGCGGATCTGGTTTCCCCGACATTGCAATT
* *
43006347 AAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCT
1 -AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCT
* *** ** *
43006412 ACGATGGTAAATCTTATTTCCCAGACATTGCAATT
65 ACGACGGCGGATCTGGTTTCCCCGACATTGCAATT
* * *
43006447 AAAAGGATTGAAGCCACAACGACGGATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAG-T
1 AAAA-GATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCT
* * * * *
43006511 CACAATGGCGAATCTTGTTTCCCCGACATTGCAGTT
65 -ACGACGGCGGATCTGGTTTCCCCGACATTGCAATT
*
43006547 AAATAAATTGAAG
1 AAA-AGATTGAAG
43006560 AAAATAATCC
Statistics
Matches: 448, Mismatches: 53, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
98 4 0.01
99 73 0.16
100 299 0.67
101 72 0.16
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (99 bp):
AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTA
CGACGGCGGATCTGGTTTCCCCGACATTGCAATT
Found at i:43011401 original size:24 final size:24
Alignment explanation
Indices: 43011356--43011401 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
43011346 TCATTTAACT
*
43011356 TAATTGAACATGTTCATAAACATA
1 TAATTGAACATGTTCACAAACATA
* *
43011380 TAATTGAATATGTTCACGAACA
1 TAATTGAACATGTTCACAAACA
43011402 ATGTTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (24 bp):
TAATTGAACATGTTCACAAACATA
Found at i:43011653 original size:12 final size:12
Alignment explanation
Indices: 43011624--43011657 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
43011614 ATCATTAATA
*
43011624 AATAAACGAGTC
1 AATAAACGAGCC
43011636 -ATAAACGAGCC
1 AATAAACGAGCC
43011647 AATAAACGAGC
1 AATAAACGAGC
43011658 TTGTTCGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.50, C:0.21, G:0.18, T:0.12
Consensus pattern (12 bp):
AATAAACGAGCC
Found at i:43019596 original size:13 final size:13
Alignment explanation
Indices: 43019578--43019608 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
43019568 CAAGATATTC
43019578 TTTAAATTACTCT
1 TTTAAATTACTCT
*
43019591 TTTAAATTATTCT
1 TTTAAATTACTCT
43019604 TTTAA
1 TTTAA
43019609 GTAACATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTAAATTACTCT
Found at i:43020075 original size:45 final size:45
Alignment explanation
Indices: 43019979--43020116 Score: 217
Period size: 45 Copynumber: 3.1 Consensus size: 45
43019969 TGCTATTACA
* * * *
43019979 ATTCTATTCCATTCAACCAAACACA-AGAA-TACTGTTACAGTTCT
1 ATTCCATTCCATTCAACCAAACA-ATTGAATTGCTATTACAGTTCT
43020023 ATTCCATTCCATTCAACCAAACAATTGAATTGCTATTACAGTTCT
1 ATTCCATTCCATTCAACCAAACAATTGAATTGCTATTACAGTTCT
43020068 ATTCCATTCCATTCAACCAAACAATTGAATTGCTATTACAGTTCT
1 ATTCCATTCCATTCAACCAAACAATTGAATTGCTATTACAGTTCT
43020113 ATTC
1 ATTC
43020117 TATTACAACT
Statistics
Matches: 88, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
43 1 0.01
44 25 0.28
45 62 0.70
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.35
Consensus pattern (45 bp):
ATTCCATTCCATTCAACCAAACAATTGAATTGCTATTACAGTTCT
Found at i:43020121 original size:16 final size:16
Alignment explanation
Indices: 43020100--43020153 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
43020090 AATTGAATTG
*
43020100 CTATTACAGTTCTATT
1 CTATTACAGCTCTATT
*
43020116 CTATTACAACTCTATT
1 CTATTACAGCTCTATT
43020132 AC-ATTACAGCTCTATT
1 -CTATTACAGCTCTATT
*
43020148 CCATTA
1 CTATTA
43020154 TACTGAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 1 0.03
16 31 0.94
17 1 0.03
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.43
Consensus pattern (16 bp):
CTATTACAGCTCTATT
Found at i:43021621 original size:87 final size:87
Alignment explanation
Indices: 43021518--43022208 Score: 1053
Period size: 87 Copynumber: 7.9 Consensus size: 87
43021508 CCTATTAACC
* * * ** *
43021518 GGATTTCCATTTTTGAAATGATTTTCTTTGTGGCGTGTGTTGATTACATTGTGCTTATAAATTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
*
43021583 CGAATGAGCCCAAGCCCGAAAG
66 CGAACGAGCCCAAGCCCGAAAG
* * * * *
43021605 GGATTTCCATTTTTGAAATGGTTTTCTTCGTGGCTTGTGTTGATTACATCATGTTTATAAGTTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
* * *
43021670 CGAACGAGCCCAAGCTCAAAAA
66 CGAACGAGCCCAAGCCCGAAAG
* * * *
43021692 GGATTTCCATTTTTGAAATGATTTTCTTTGTCGCGTGCTTTAATTACATCATGTTTATAAGTTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
**
43021757 CGAATAAGCCCAAGCCCGAAAG
66 CGAACGAGCCCAAGCCCGAAAG
43021779 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
*
43021844 CGAACGAGCCCAAGCCTGAAAG
66 CGAACGAGCCCAAGCCCGAAAG
* *
43021866 GGATATCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAGTTACATCATGTTTATAAATTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
43021931 CGAACGAG-CCAATGCCCGAAAG
66 CGAACGAGCCCAA-GCCCGAAAG
* *
43021953 GGATTTCCATTTTTGAAATGATTTTCTTTGTGGCGTGCGTTAATTACATCATGTCTATAAATTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
*
43022018 CGAATGAGCCCAAGCCCGAAAG
66 CGAACGAGCCCAAGCCCGAAAG
* * *
43022040 GGATATCCGTTTTTGAAATGATTTTCTTTGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
43022105 CGAACGAG-CCAATGCCCGAAAG
66 CGAACGAGCCCAA-GCCCGAAAG
* * *
43022127 GGATTTCCATTTTTGAAATGATTATCTTCGTGGTGTGCGTTATTTACATCATGTTTATAAATTTA
1 GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
43022192 CGAACGAGCCCAAGCCC
66 CGAACGAGCCCAAGCCC
43022209 AATACACTGT
Statistics
Matches: 552, Mismatches: 48, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
86 8 0.01
87 536 0.97
88 8 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (87 bp):
GGATTTCCATTTTTGAAATGATTTTCTTCGTGGCGTGCGTTAATTACATCATGTTTATAAATTTA
CGAACGAGCCCAAGCCCGAAAG
Found at i:43022870 original size:22 final size:22
Alignment explanation
Indices: 43022827--43022870 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
43022817 ACAATTTGTC
* **
43022827 ATGTCGTATTTTCATAGTGTAT
1 ATGTCATATTTTCATAACGTAT
*
43022849 ATGTCATATTTTCGTAACGTAT
1 ATGTCATATTTTCATAACGTAT
43022871 TTGCTTTGTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.48
Consensus pattern (22 bp):
ATGTCATATTTTCATAACGTAT
Found at i:43029096 original size:3 final size:3
Alignment explanation
Indices: 43029088--43029116 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
43029078 TTTAAGTTTC
43029088 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
43029117 GTACTAGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:43029132 original size:3 final size:3
Alignment explanation
Indices: 43029126--43029157 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
43029116 AGTACTAGTA
43029126 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
43029158 ACTACTACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.31, T:0.34
Consensus pattern (3 bp):
CTG
Found at i:43029162 original size:3 final size:3
Alignment explanation
Indices: 43029156--43029188 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
43029146 GCTGCTGCTG
43029156 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
43029189 TTTGCATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CTA
Found at i:43029841 original size:14 final size:14
Alignment explanation
Indices: 43029822--43029849 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
43029812 AACTCTCTCA
43029822 AAGTATATATTTCT
1 AAGTATATATTTCT
43029836 AAGTATATATTTCT
1 AAGTATATATTTCT
43029850 TAGAAATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
AAGTATATATTTCT
Found at i:43031040 original size:27 final size:27
Alignment explanation
Indices: 43031002--43031053 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
43030992 CAAGGAAGTT
43031002 TGTTTCTTTGTGGCTGGAAAACTATTA
1 TGTTTCTTTGTGGCTGGAAAACTATTA
43031029 TGTTTCTTTGTGGCTGGAAAACTAT
1 TGTTTCTTTGTGGCTGGAAAACTAT
43031054 GTTTCTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.44
Consensus pattern (27 bp):
TGTTTCTTTGTGGCTGGAAAACTATTA
Found at i:43031059 original size:24 final size:25
Alignment explanation
Indices: 43031002--43031061 Score: 95
Period size: 27 Copynumber: 2.4 Consensus size: 25
43030992 CAAGGAAGTT
43031002 TGTTTCTTTGTGGCTGGAAAACTATTA
1 TGTTTCTTTGTGGCTGGAAAAC--TTA
43031029 TGTTTCTTTGTGGCTGGAAAAC-TA
1 TGTTTCTTTGTGGCTGGAAAACTTA
43031053 TGTTTCTTT
1 TGTTTCTTT
43031062 TGTTTTTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.33
27 22 0.67
ACGTcount: A:0.18, C:0.12, G:0.22, T:0.48
Consensus pattern (25 bp):
TGTTTCTTTGTGGCTGGAAAACTTA
Found at i:43032071 original size:127 final size:126
Alignment explanation
Indices: 43031846--43032096 Score: 412
Period size: 127 Copynumber: 2.0 Consensus size: 126
43031836 GGGCCCGAAG
* * * *
43031846 AATCACCAATCGAGTATGAGAATATCTCTAAGTTTGTTTTGAATTAAGTTTTTAAGAAAATGTAT
1 AATCACCAATCAAGCATGAGAAGATCTCTAAGTTTGTTTTGAATTAAATTTTTAAGAAAATGTAT
*
43031911 TATTTGTTGAAGACCTCGTAGCGTTGTGTGGCTTAATTTGTAGTTTTACAGTCATATAGAA
66 TATTTGTTGAAGACCTCGTAGCCTTGTGTGGCTTAATTTGTAGTTTTACAGTCATATAGAA
* *
43031972 AATCACCAATCAAGCATGAGAAAGATCTCTAAGTTTGTTTTGAATTAAATTTTTTAGTAAATGTA
1 AATCACCAATCAAGCATGAG-AAGATCTCTAAGTTTGTTTTGAATTAAATTTTTAAGAAAATGTA
* *
43032037 TTATTTGTTGAAGACCTTGTAGCCTTGTGTGGCTTAATTTGTAGTTTTACTGTCATATAG
65 TTATTTGTTGAAGACCTCGTAGCCTTGTGTGGCTTAATTTGTAGTTTTACAGTCATATAG
43032097 GAAACTTCTG
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
126 18 0.16
127 97 0.84
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (126 bp):
AATCACCAATCAAGCATGAGAAGATCTCTAAGTTTGTTTTGAATTAAATTTTTAAGAAAATGTAT
TATTTGTTGAAGACCTCGTAGCCTTGTGTGGCTTAATTTGTAGTTTTACAGTCATATAGAA
Found at i:43034562 original size:51 final size:53
Alignment explanation
Indices: 43034414--43034620 Score: 343
Period size: 53 Copynumber: 4.0 Consensus size: 53
43034404 TCCATGGGAA
*
43034414 AATTAGGGGTCCTG-AAGGC--TGTGTTCCTTGCACAATGGCAAAACTATGTC
1 AATTAGGGGTCCTGAAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
43034464 AATTAGGGGTCCTGAAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
1 AATTAGGGGTCCTGAAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
*
43034517 AATTAGGGGTCCTGAAAGG-T-TGTGTTCTTTACACAATGGCAAAACTATGTC
1 AATTAGGGGTCCTGAAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
* *
43034568 AATTAGGGGCCCTGAAAGGCTGTGTGTTCCTTGCACAATGGCAAAACTATGTC
1 AATTAGGGGTCCTGAAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
43034621 TTAATTTCAG
Statistics
Matches: 147, Mismatches: 5, Indels: 7
0.92 0.03 0.04
Matches are distributed among these distances:
50 14 0.10
51 53 0.36
52 2 0.01
53 78 0.53
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (53 bp):
AATTAGGGGTCCTGAAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
Found at i:43034593 original size:104 final size:103
Alignment explanation
Indices: 43034414--43034620 Score: 360
Period size: 104 Copynumber: 2.0 Consensus size: 103
43034404 TCCATGGGAA
* *
43034414 AATTAGGGGTCCTGAAGGCTGTGTTCCTTGCACAATGGCAAAACTATGTCAATTAGGGGTCCTGA
1 AATTAGGGGTCCTGAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTCAATTAGGGGCCCTGA
43034479 AAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
66 AAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
* *
43034517 AATTAGGGGTCCTGAAAGGTTGTGTTCTTTACACAATGGCAAAACTATGTCAATTAGGGGCCCTG
1 AATTAGGGGTCCTG-AAGGCTGTGTTCCTTACACAATGGCAAAACTATGTCAATTAGGGGCCCTG
*
43034582 AAAGGCTGTGTGTTCCTTGCACAATGGCAAAACTATGTC
65 AAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
43034621 TTAATTTCAG
Statistics
Matches: 98, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
103 14 0.14
104 84 0.86
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (103 bp):
AATTAGGGGTCCTGAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTCAATTAGGGGCCCTGA
AAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
Found at i:43042165 original size:23 final size:22
Alignment explanation
Indices: 43042104--43042165 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 22
43042094 GTCGAAATAT
43042104 AATTATAATTTTTTATAGATTA
1 AATTATAATTTTTTATAGATTA
* *
43042126 AAATATAAGTTTATTAT-GTATTA
1 AATTATAA-TTTTTTATAG-ATTA
*
43042149 ATTTATAATTTCTTTAT
1 AATTATAATTT-TTTAT
43042166 TTATAAGATG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 11 0.34
23 21 0.66
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (22 bp):
AATTATAATTTTTTATAGATTA
Found at i:43042890 original size:5 final size:5
Alignment explanation
Indices: 43042880--43042907 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
43042870 ATATAATCTA
43042880 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
43042908 CTATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:43044296 original size:108 final size:107
Alignment explanation
Indices: 43044109--43044430 Score: 461
Period size: 109 Copynumber: 3.0 Consensus size: 107
43044099 TGGATTAAAA
* * * *
43044109 TTTAAGAGGATATTTGACTATTTGGTTAAACGAG--AAATTGAAACCCAGCACATTAGGGCACAT
1 TTTAAAAGGATATTT-ACTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
*
43044172 TTCCTCGAATTTCCAAACGCAAAATATTGTCTTATTTCGAAA-T
65 TTTCTCGAATTTCCAAACGCAAAATATTGTCTTATTT-GAAATT
* *
43044215 TTTAAAAGGATATTTCACTATTTGATCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
1 TTTAAAAGGATATTT-ACTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
* *
43044280 TTTCTCGAATTTCCAAACGCAAAACATTGTCTTGTTTTGAAATT
65 TTTCTCGAATTTCCAAACGCAAAATATTGTCTT-ATTTGAAATT
*
43044324 TTTAAAAGGATATTTAGCTATTTGGTTGAATGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
1 TTTAAAAGGATATTTA-CTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
* *
43044389 TTTATCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAA
65 TTTCTCGAATTTCCAAACGCAAAATATTGTCTTA-TTTGAAA
43044431 AATTTTCCTT
Statistics
Matches: 193, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
106 29 0.15
108 63 0.33
109 101 0.52
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (107 bp):
TTTAAAAGGATATTTACTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTT
TTCTCGAATTTCCAAACGCAAAATATTGTCTTATTTGAAATT
Found at i:43044532 original size:18 final size:19
Alignment explanation
Indices: 43044509--43044545 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
43044499 AATAATATGA
*
43044509 ACAAAAACGAAT-AATAAT
1 ACAAAAACAAATCAATAAT
43044527 ACAAAAACAAATCAATAAT
1 ACAAAAACAAATCAATAAT
43044546 GTATATACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.68, C:0.14, G:0.03, T:0.16
Consensus pattern (19 bp):
ACAAAAACAAATCAATAAT
Found at i:43044569 original size:4 final size:4
Alignment explanation
Indices: 43044560--43044595 Score: 63
Period size: 4 Copynumber: 8.8 Consensus size: 4
43044550 ATACCATAAC
43044560 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAACT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA-T AAA
43044596 ACATAAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:43044931 original size:16 final size:17
Alignment explanation
Indices: 43044910--43044954 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
43044900 TACAAAATGT
43044910 ATATAAAAAT-TATAAA
1 ATATAAAAATATATAAA
*
43044926 ATATAAAATATATATATA
1 ATATAAAA-ATATATAAA
43044944 A-ATAAAAATAT
1 ATATAAAAATAT
43044955 GTACGTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATATAAAAATATATAAA
Found at i:43044933 original size:27 final size:25
Alignment explanation
Indices: 43044903--43044954 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
43044893 ATATGTATAC
*
43044903 AAAATGTATATAAAAATTATAAAATAT
1 AAAATATATATAAAAA-TA-AAAATAT
*
43044930 AAAATATATATATAAATAAAAATAT
1 AAAATATATATAAAAATAAAAATAT
43044955 GTACGTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 7 0.30
26 2 0.09
27 14 0.61
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (25 bp):
AAAATATATATAAAAATAAAAATAT
Found at i:43044941 original size:18 final size:18
Alignment explanation
Indices: 43044910--43044954 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
43044900 TACAAAATGT
43044910 ATATAAAA-ATTATA-AA
1 ATATAAAATATTATATAA
43044926 ATATAAAATATATATATAA
1 ATATAAAATAT-TATATAA
43044945 ATA-AAAATAT
1 ATATAAAATAT
43044955 GTACGTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 8 0.31
17 2 0.08
18 11 0.42
19 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATATAAAATATTATATAA
Found at i:43044974 original size:67 final size:67
Alignment explanation
Indices: 43044848--43044975 Score: 152
Period size: 67 Copynumber: 1.9 Consensus size: 67
43044838 TTTGTATTTT
* * *** * *
43044848 AAAATTATTAAATATAAAAGTTTATGTAAATATGTATATGCACGTATATGTATACAAAATGTATA
1 AAAATTATAAAATATAAAAGTTTATATAAATAAAAATATGCACGTATATATATAAAAAATGTATA
43044913 TA
66 TA
*
43044915 AAAATTATAAAATATAAAA-TATATATATAAATAAAAATATGTACGTATA-ATATAAAAAATG
1 AAAATTATAAAATATAAAAGT-T-TATATAAATAAAAATATGCACGTATATATATAAAAAATG
43044976 CACGCATGCA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
66 1 0.02
67 29 0.57
68 21 0.41
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (67 bp):
AAAATTATAAAATATAAAAGTTTATATAAATAAAAATATGCACGTATATATATAAAAAATGTATA
TA
Found at i:43046139 original size:20 final size:18
Alignment explanation
Indices: 43046114--43046150 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
43046104 TTATTTTGTT
43046114 TCGAAAATAAGAGAAAAAAA
1 TCGAAAA-AAGA-AAAAAAA
43046134 TCGAAAAAAGAAAAAAA
1 TCGAAAAAAGAAAAAAA
43046151 TATGCAACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.73, C:0.05, G:0.14, T:0.08
Consensus pattern (18 bp):
TCGAAAAAAGAAAAAAAA
Found at i:43046163 original size:16 final size:16
Alignment explanation
Indices: 43046144--43046176 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
43046134 TCGAAAAAAG
43046144 AAAAAAATATGCAACC
1 AAAAAAATATGCAACC
*
43046160 AAAAAAATATGCCACC
1 AAAAAAATATGCAACC
43046176 A
1 A
43046177 CCTTTCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.21, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAAAATATGCAACC
Found at i:43048824 original size:52 final size:52
Alignment explanation
Indices: 43048768--43048872 Score: 165
Period size: 52 Copynumber: 2.0 Consensus size: 52
43048758 TGCTAGGCCG
*
43048768 TGTGTCACACACGGCTGAGGCACACACCCGTGTCTCTGCCTGTGTGAACAAT
1 TGTGTCACACACGGCTGAGGCACACACCCGTGTCTCTGCCCGTGTGAACAAT
* * * *
43048820 TGTGTCACACACGGTTGAGGTACACGCCCGTGTCTTTGCCCGTGTGAACAAT
1 TGTGTCACACACGGCTGAGGCACACACCCGTGTCTCTGCCCGTGTGAACAAT
43048872 T
1 T
43048873 TTGAGCATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.26
Consensus pattern (52 bp):
TGTGTCACACACGGCTGAGGCACACACCCGTGTCTCTGCCCGTGTGAACAAT
Found at i:43049998 original size:24 final size:23
Alignment explanation
Indices: 43049953--43050038 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 23
43049943 TCCGGGCTGT
43049953 ATAACGGGAAGCTCATAAGAGCC
1 ATAACGGGAAGCTCATAAGAGCC
**
43049976 ATAACCGGGAAGCTCATGCGAGCC
1 ATAA-CGGGAAGCTCATAAGAGCC
* * **
43050000 AATAATGGGTAGCTCCGAAGAGCC
1 -ATAACGGGAAGCTCATAAGAGCC
*
43050024 ATTAATGGGAAGCTC
1 A-TAACGGGAAGCTC
43050039 CAGATAGCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
23 5 0.10
24 42 0.82
25 4 0.08
ACGTcount: A:0.34, C:0.22, G:0.28, T:0.16
Consensus pattern (23 bp):
ATAACGGGAAGCTCATAAGAGCC
Found at i:43050049 original size:72 final size:73
Alignment explanation
Indices: 43049972--43050112 Score: 162
Period size: 72 Copynumber: 1.9 Consensus size: 73
43049962 AGCTCATAAG
* * * * *
43049972 AGCCATA-ACCGGGAAGCTCATGCGAGCCAATAAT-GGGTAGCTCCGAAGAGCCATTAAT-GGGA
1 AGCCATATACCAGAAAGCTCAAGCGAGCC-AT-ATCGGGAAGCTCCGAAGAGCCATTAATCAGGA
43050034 AGCTCCAGAT
64 AGCTCCAGAT
* * * *
43050044 AGCCATATATCAGAAAGTTCAAGCGAGCCATATCGGGAAGCTCCGGAGAGCCTTTAATCAGGAAG
1 AGCCATATACCAGAAAGCTCAAGCGAGCCATATCGGGAAGCTCCGAAGAGCCATTAATCAGGAAG
43050109 CTCC
66 CTCC
43050113 CAAAAAGCCT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
71 2 0.04
72 30 0.53
73 25 0.44
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (73 bp):
AGCCATATACCAGAAAGCTCAAGCGAGCCATATCGGGAAGCTCCGAAGAGCCATTAATCAGGAAG
CTCCAGAT
Found at i:43050147 original size:26 final size:26
Alignment explanation
Indices: 43050075--43050164 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
43050065 AGCGAGCCAT
*
43050075 ATCGGGAAGCTC-CGGAGAGCCTTTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
* * * *
43050100 ATCAGGAAGCTCCCAAAAAGCCTTTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
*
43050126 ATCGGGAAGCTCACGAAGAGCCATATA
1 ATCGGGAAGCTCACGAAGAGCC-TTTA
*
43050153 A-CGGGACGCTCA
1 ATCGGGAAGCTCA
43050165 TAAGAGCTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
25 11 0.21
26 38 0.72
27 4 0.08
ACGTcount: A:0.32, C:0.26, G:0.26, T:0.17
Consensus pattern (26 bp):
ATCGGGAAGCTCACGAAGAGCCTTTA
Found at i:43050638 original size:5 final size:5
Alignment explanation
Indices: 43050630--43050654 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
43050620 TATAATTCCT
43050630 ATTCA ATTCA ATTCA ATTCA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA
43050655 CATCCTAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTCA
Found at i:43052325 original size:24 final size:23
Alignment explanation
Indices: 43052280--43052365 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 23
43052270 TCCGGGCTGT
43052280 ATAACGGGAAGCTCATAAGAGCC
1 ATAACGGGAAGCTCATAAGAGCC
**
43052303 ATAACCGGGAAGCTCATGCGAGCC
1 ATAA-CGGGAAGCTCATAAGAGCC
* * **
43052327 AATAATGGGTAGCTCCGAAGAGCC
1 -ATAACGGGAAGCTCATAAGAGCC
*
43052351 ATTAATGGGAAGCTC
1 A-TAACGGGAAGCTC
43052366 CAGATAGCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
23 5 0.10
24 42 0.82
25 4 0.08
ACGTcount: A:0.34, C:0.22, G:0.28, T:0.16
Consensus pattern (23 bp):
ATAACGGGAAGCTCATAAGAGCC
Found at i:43052376 original size:72 final size:73
Alignment explanation
Indices: 43052299--43052439 Score: 162
Period size: 72 Copynumber: 1.9 Consensus size: 73
43052289 AGCTCATAAG
* * * * *
43052299 AGCCATA-ACCGGGAAGCTCATGCGAGCCAATAAT-GGGTAGCTCCGAAGAGCCATTAAT-GGGA
1 AGCCATATACCAGAAAGCTCAAGCGAGCC-AT-ATCGGGAAGCTCCGAAGAGCCATTAATCAGGA
43052361 AGCTCCAGAT
64 AGCTCCAGAT
* * * *
43052371 AGCCATATATCAGAAAGTTCAAGCGAGCCATATCGGGAAGCTCCGGAGAGCCTTTAATCAGGAAG
1 AGCCATATACCAGAAAGCTCAAGCGAGCCATATCGGGAAGCTCCGAAGAGCCATTAATCAGGAAG
43052436 CTCC
66 CTCC
43052440 CAAAAAGCCT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
71 2 0.04
72 30 0.53
73 25 0.44
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (73 bp):
AGCCATATACCAGAAAGCTCAAGCGAGCCATATCGGGAAGCTCCGAAGAGCCATTAATCAGGAAG
CTCCAGAT
Found at i:43052474 original size:26 final size:26
Alignment explanation
Indices: 43052402--43052491 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
43052392 AGCGAGCCAT
*
43052402 ATCGGGAAGCTC-CGGAGAGCCTTTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
* * * *
43052427 ATCAGGAAGCTCCCAAAAAGCCTTTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
*
43052453 ATCGGGAAGCTCACGAAGAGCCATATA
1 ATCGGGAAGCTCACGAAGAGCC-TTTA
*
43052480 A-CGGGACGCTCA
1 ATCGGGAAGCTCA
43052492 TAAGAGCTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
25 11 0.21
26 38 0.72
27 4 0.08
ACGTcount: A:0.32, C:0.26, G:0.26, T:0.17
Consensus pattern (26 bp):
ATCGGGAAGCTCACGAAGAGCCTTTA
Found at i:43052965 original size:5 final size:5
Alignment explanation
Indices: 43052957--43052981 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
43052947 TATAATTCCT
43052957 ATTCA ATTCA ATTCA ATTCA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA
43052982 CATCCTAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTCA
Found at i:43053768 original size:21 final size:20
Alignment explanation
Indices: 43053729--43053768 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
43053719 TAACGCAATC
*
43053729 AAATTTAATCCACTTGACTT
1 AAATTTAATCCACTCGACTT
*
43053749 AAATTTAATTTCACTCGACT
1 AAATTTAA-TCCACTCGACT
43053769 CGATTGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.20, G:0.05, T:0.40
Consensus pattern (20 bp):
AAATTTAATCCACTCGACTT
Found at i:43058919 original size:109 final size:110
Alignment explanation
Indices: 43058735--43058959 Score: 427
Period size: 109 Copynumber: 2.1 Consensus size: 110
43058725 TCACTTGTGT
43058735 CAATGCCGAAAAATCATAATCTCTGAAAGAATTAGCGATGAAACTGGGGAAGCTGATTGAGGCTT
1 CAATGCCGAAAAATCATAATCTCTGAAAGAATTAGCGATGAAACTGGGGAAGCTGATTGAGGCTT
43058800 GCTAGCTCCGGTCAACACAACACCATTTGCGGGGGTAACTTGCCC
66 GCTAGCTCCGGTCAACACAACACCATTTGCGGGGGTAACTTGCCC
43058845 CAATGCCG-AAAATCATAATCTCTG-AAGAATTAGCTGATGAAACTGGGGAAGCTGATTGAGGCT
1 CAATGCCGAAAAATCATAATCTCTGAAAGAATTAGC-GATGAAACTGGGGAAGCTGATTGAGGCT
43058908 TGCTAGCTCCGGTCAACACAACACCATTTGCGGGGGTAACTTGCCC
65 TGCTAGCTCCGGTCAACACAACACCATTTGCGGGGGTAACTTGCCC
43058954 CAATGC
1 CAATGC
43058960 ATAAAAGCTG
Statistics
Matches: 114, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
108 10 0.09
109 96 0.84
110 8 0.07
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.22
Consensus pattern (110 bp):
CAATGCCGAAAAATCATAATCTCTGAAAGAATTAGCGATGAAACTGGGGAAGCTGATTGAGGCTT
GCTAGCTCCGGTCAACACAACACCATTTGCGGGGGTAACTTGCCC
Found at i:43063429 original size:15 final size:14
Alignment explanation
Indices: 43063409--43063439 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
43063399 AATGCTCAAC
43063409 AAAAAGAAGAAAAAG
1 AAAAAGAA-AAAAAG
43063424 AAAAAGAAAAAAAG
1 AAAAAGAAAAAAAG
43063438 AA
1 AA
43063440 GTTGAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAG
Found at i:43071140 original size:15 final size:14
Alignment explanation
Indices: 43071120--43071150 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
43071110 AATGCTCAAC
43071120 AAAAAGAAGAAAAAG
1 AAAAAGAA-AAAAAG
43071135 AAAAAGAAAAAAAG
1 AAAAAGAAAAAAAG
43071149 AA
1 AA
43071151 GTTGAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAG
Found at i:43073798 original size:23 final size:23
Alignment explanation
Indices: 43073768--43073815 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
43073758 CAACTAGAAG
43073768 ACTTCGAGCTTTGATTTAGGCAA
1 ACTTCGAGCTTTGATTTAGGCAA
43073791 ACTTCGAGCTTTGATTTAGGCAA
1 ACTTCGAGCTTTGATTTAGGCAA
43073814 AC
1 AC
43073816 ATTATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (23 bp):
ACTTCGAGCTTTGATTTAGGCAA
Found at i:43081168 original size:2 final size:2
Alignment explanation
Indices: 43081161--43081186 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
43081151 CATATCTCAT
43081161 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
43081187 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:43085810 original size:30 final size:29
Alignment explanation
Indices: 43085752--43085811 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
43085742 ATTTTTATCC
* * *
43085752 TTTTATATATATATACGTACCTATATATA
1 TTTTATATATATACACATACCTACATATA
*
43085781 TTTTATAATATTTACACATACCTACATATA
1 TTTTAT-ATATATACACATACCTACATATA
43085811 T
1 T
43085812 GTCTGTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (29 bp):
TTTTATATATATACACATACCTACATATA
Found at i:43086695 original size:109 final size:110
Alignment explanation
Indices: 43086483--43087029 Score: 809
Period size: 109 Copynumber: 5.0 Consensus size: 110
43086473 TTCAAAAAAG
* * * * * *
43086483 AAAAATTTTCTAAATAAGGCAATATTTTGCATTT-GAAAGTTCGAGAAAGCGTGCCCTAATGTGC
1 AAAAATTTT-AAAATAAGGCAATGTTTTGCGTTTAGAAA-TTCGAGAAAACATGCCCTAAGGTGC
* * * **
43086547 TGGGTTTCGATTTTTCTCGTTCGACCTAAT-AGCCAAATATCC-TTTC
64 TGGGTGTCGATTTTTCTCGTTCAACCAAATGA-CTTAATATCCTTTTC
*
43086593 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
43086658 GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATATCCTTTTA
66 GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATATCCTTTTC
* * *
43086703 AAAAATTTTAAGATAAGGCAATGTTTTGCGTTTGGAAACTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
43086768 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTC
66 GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATATCCTTTTC
* *
43086813 -AAAATTTCAAAATATGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
43086877 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTC
66 GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATATCCTTTTC
* *
43086922 -AAAATTTCAAAATATGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
43086986 GGTGTCGATTTTTCTCGTTCAACCAAAT-AGCTAAATATCCTTTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGA-CTTAATATCCTTTT
43087030 GAATTTAAAT
Statistics
Matches: 410, Mismatches: 23, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
109 287 0.70
110 123 0.30
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (110 bp):
AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATATCCTTTTC
Found at i:43086875 original size:219 final size:218
Alignment explanation
Indices: 43086483--43087029 Score: 839
Period size: 219 Copynumber: 2.5 Consensus size: 218
43086473 TTCAAAAAAG
* * * * * *
43086483 AAAAATTTTCTAAATAAGGCAATATTTTGCATTTGAAAGTTCGAGAAAGCGTGCCCTAATGTGCT
1 AAAAAATTT-TAAATAAGGCAATGTTTTGCGTTTGAAA-TTCGAGAAAACATGCCCTAAGGTGCT
* * * * *
43086548 GGGTTTCGATTTTTCTCGTTCGACCTAATAGCCAAATATCC-TTTCAAAAATTTTAAAATAAGGC
64 GGGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTTCAAAAATTTCAAAATAAGGC
*
43086612 AATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTT
129 AATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTT
43086677 CAACCAAATGACTTAATATCCTTTT
194 CAACCAAATGACTTAATATCCTTTT
*
43086702 AAAAAATTTTAAGATAAGGCAATGTTTTGCGTTTGGAAACTCGAGAAAACATGCCCTAAGGTGCT
1 AAAAAATTTTAA-ATAAGGCAATGTTTTGCGTTT-GAAATTCGAGAAAACATGCCCTAAGGTGCT
* * *
43086767 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTC-AAAATTTCAAAATATGGC
64 GGGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTTCAAAAATTTCAAAATAAGGC
43086831 AATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTT
129 AATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTT
*
43086896 CAACCAAATGGCTTAATATCCTTTT
194 CAACCAAATGACTTAATATCCTTTT
* * *
43086921 -CAAAATTTCAAAATATGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCT
1 AAAAAATTT-TAAATAAGGCAATGTTTTGCGTTT-GAAATTCGAGAAAACATGCCCTAAGGTGCT
43086985 GGGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTT
64 GGGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTT
43087030 GAATTTAAAT
Statistics
Matches: 300, Mismatches: 24, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
218 102 0.34
219 190 0.63
220 8 0.03
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (218 bp):
AAAAAATTTTAAATAAGGCAATGTTTTGCGTTTGAAATTCGAGAAAACATGCCCTAAGGTGCTGG
GTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTTCAAAAATTTCAAAATAAGGCAA
TGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCA
ACCAAATGACTTAATATCCTTTT
Found at i:43089962 original size:19 final size:19
Alignment explanation
Indices: 43089929--43089976 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
43089919 AATCAAAGTC
* *
43089929 AAAATGAAAATGAAAAA-G
1 AAAAAGAAAAAGAAAAAGG
43089947 AGAAAAGAAAAAGAAAAAGG
1 A-AAAAGAAAAAGAAAAAGG
43089967 AAAAAGAAAA
1 AAAAAGAAAA
43089977 GGAGAGACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 1 0.04
19 23 0.88
20 2 0.08
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (19 bp):
AAAAAGAAAAAGAAAAAGG
Found at i:43089977 original size:5 final size:6
Alignment explanation
Indices: 43089929--43089976 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
43089919 AATCAAAGTC
* *
43089929 AAAATG AAAATG AAAAAG AGAAAAG AAAAAG AAAAAGG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAA-G AAAAAG AAAA
43089977 GGAGAGACCA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
6 27 0.69
7 12 0.31
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (6 bp):
AAAAAG
Found at i:43091788 original size:86 final size:86
Alignment explanation
Indices: 43091628--43092686 Score: 1646
Period size: 86 Copynumber: 12.5 Consensus size: 86
43091618 AGTGGAGCTG
* * *
43091628 GATCTTGCCTTACTGCGTTAACAGCAAAGCAGATCGAAAACAAAGCCTTGCCTCCATTGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43091693 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
* * * * * * *
43091714 GATATTACCTTCCTACGTTAACAGGGAAGCAGATCAAAAATAAAGTCTTGCCTCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
* *
43091779 GTAGAGCTGGTTAAAGAAGTA
66 GTGGAGCTGGTTAAAGAAGCA
* *
43091800 GATCTTGCCTTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGATTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43091865 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
* * *
43091886 GATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTCCCTCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43091951 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
* * * *
43091972 GATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGTA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
*
43092037 GTGGAGC----T----AAGTA
66 GTGGAGCTGGTTAAAGAAGCA
*
43092050 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43092115 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
*
43092136 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
*
43092201 GTAGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
* *
43092222 GATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43092287 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
* * * *
43092308 GATCTTGCATTCTTGCGTTAACAGCGAAGTAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43092373 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
*
43092394 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
* *
43092459 GTTGAGC----T----AAGTA
66 GTGGAGCTGGTTAAAGAAGCA
* *
43092472 GATCTTGCCTTCCTGCGTTAACAGCGAAGTAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43092537 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
*
43092558 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43092623 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTTAAAGAAGCA
* * *
43092644 GATCATGCCTTCATGCGTTAACAGTGAAGCAGATCGAAAACAA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAA
43092687 TCATGCCTTC
Statistics
Matches: 893, Mismatches: 64, Indels: 32
0.90 0.06 0.03
Matches are distributed among these distances:
78 145 0.16
82 4 0.00
86 744 0.83
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (86 bp):
GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
GTGGAGCTGGTTAAAGAAGCA
Found at i:43092249 original size:336 final size:337
Alignment explanation
Indices: 43091628--43092686 Score: 1591
Period size: 336 Copynumber: 3.1 Consensus size: 337
43091618 AGTGGAGCTG
* * *
43091628 GATCTTGCCTTAC-TGCGTTAACAGCAAAGCAGATCGAAAACAAAGCCTTGCCTCCATTGGTTGC
1 GATCTTGCATT-CTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
* * * * * *
43091692 AGTGGAGCTGGTTAAAGAAGCAGATATTACCTTCCTACGTTAACAGGGAAGCAGATCAAAAATAA
65 AGTGGAGC--G-T--A-AAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAA
* *
43091757 AGTCTTGCCTCCATCGGTTGCAGTAGAGCTGGTTAAAGAAGTAGATCTTGCCTTCTTGCGTTAAC
124 AGCCTTGCCTCCATCGGTTGCAGTAGAGCTGGTTAAAGAAGTAGATCTTGCCTTCCTGCGTTAAC
43091822 AGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGAAGCAG
189 AGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCG-TTGCAGTGGAGCTGGTTAAAGAAGCAG
* * *
43091887 ATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTCCCTCCATCGGTTGCAG
253 ATCTTGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAG
43091952 TGGAGCTGGTTAAAGAAGCA
318 TGGAGCTGGTTAAAGAAGCA
* *
43091972 GATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGTA
1 GATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
*
43092037 GTGGAGC-T-AAGTAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
66 GTGGAGCGTAAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
* * *
43092100 CCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAG
131 CCTCCATCGGTTGCAGTAGAGCTGGTTAAAGAAGTAGATCTTGCCTTCCTGCGTTAACAGCGAAG
* *
43092165 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTAGAGCTGGTTAAAGAAGCAGATCATGC
196 CAGATCGAAAACAAAGCCTTGCCTCCATC-GTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGC
43092230 CTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
260 CTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
43092295 GGTTAAAGAAGCA
325 GGTTAAAGAAGCA
* *
43092308 GATCTTGCATTCTTGCGTTAACAGCGAAGTAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCA
1 GATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
43092373 GTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAA
66 GTGGAGC--G-T--A-AAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAA
* *
43092438 GCCTTGCCTCCATCAGTTGCAGTTGAGC----T----AAGTAGATCTTGCCTTCCTGCGTTAACA
125 GCCTTGCCTCCATCGGTTGCAGTAGAGCTGGTTAAAGAAGTAGATCTTGCCTTCCTGCGTTAACA
* *
43092495 GCGAAGTAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
190 GCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATC-GTTGCAGTGGAGCTGGTTAAAGAAGCAGA
* *
43092560 TCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGT
254 TCTTGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGT
43092625 GGAGCTGGTTAAAGAAGCA
319 GGAGCTGGTTAAAGAAGCA
* * * *
43092644 GATCATGCCTTCATGCGTTAACAGTGAAGCAGATCGAAAACAA
1 GATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAA
43092687 TCATGCCTTC
Statistics
Matches: 662, Mismatches: 43, Indels: 28
0.90 0.06 0.04
Matches are distributed among these distances:
336 519 0.78
337 1 0.00
340 3 0.00
343 1 0.00
344 138 0.21
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (337 bp):
GATCTTGCATTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
GTGGAGCGTAAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
CCTCCATCGGTTGCAGTAGAGCTGGTTAAAGAAGTAGATCTTGCCTTCCTGCGTTAACAGCGAAG
CAGATCGAAAACAAAGCCTTGCCTCCATCGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCC
TTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTG
GTTAAAGAAGCA
Found at i:43092413 original size:422 final size:422
Alignment explanation
Indices: 43091590--43092686 Score: 1900
Period size: 422 Copynumber: 2.6 Consensus size: 422
43091580 ATGAAGATAA
* *
43091590 AAAATAAAGCCTTGCCTCCATC-GTTTGCAGTGGAGCT--G--GATCTTGCCTTACTGCGTTAAC
1 AAAACAAAGCCTTGCCTCCATCAG-TTGCAGTGGAGCTAAGTAGATCTTGCCTTCCTGCGTTAAC
* *
43091650 AGCAAAGCAGATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAG
65 AGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAG
* * * * * * * *
43091715 ATATTACCTTCCTACGTTAACAGGGAAGCAGATCAAAAATAAAGTCTTGCCTCCATCGGTTGCAG
130 ATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAG
* * *
43091780 TAGAGCTGGTTAAAGAAGTAGATCTTGCCTTCTTGCGTTAACAGCGAAGCAGATCGAAAACAAAG
195 TAGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAG
43091845 CCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCATTCTTGCGTTAACAG
260 CCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCATTCTTGCGTTAACAG
43091910 CGAAGCAGATCGAAAACAAAGCCTTCCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
325 CGAAGCAGATCGAAAACAAAGCCTTCCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
*
43091975 CTTGCATTCTTGCGTTAACAGCGAAGCAGATCG
390 CTTGCATTCCTGCGTTAACAGCGAAGCAGATCG
*
43092008 AAAACAAAGCCTTGCCTCCATCAGTTGTAGTGGAGCTAAGTAGATCTTGCCTTCCTGCGTTAACA
1 AAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTAAGTAGATCTTGCCTTCCTGCGTTAACA
*
43092073 GCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGA
66 GCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
43092138 TCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGT
131 TCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGT
43092203 AGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
196 AGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
*
43092268 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCATTCTTGCGTTAACAGC
261 CTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCATTCTTGCGTTAACAGC
*
43092333 GAAGTAGATCGAAAACAAAGCCTTGCCC-CCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
326 GAAGCAGATCGAAAACAAAGCCTT-CCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
*
43092397 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCG
390 CTTGCATTCCTGCGTTAACAGCGAAGCAGATCG
*
43092430 AAAACAAAGCCTTGCCTCCATCAGTTGCAGTTGAGCTAAGTAGATCTTGCCTTCCTGCGTTAACA
1 AAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTAAGTAGATCTTGCCTTCCTGCGTTAACA
* *
43092495 GCGAAGTAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
66 GCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
43092560 TCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGT
131 TCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGT
* *
43092625 GGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGTGAAGCAGATCGAAAACAA
196 AGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAA
43092687 TCATGCCTTC
Statistics
Matches: 645, Mismatches: 28, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
418 33 0.05
419 1 0.00
420 1 0.00
422 607 0.94
423 3 0.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (422 bp):
AAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTAAGTAGATCTTGCCTTCCTGCGTTAACA
GCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
TCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGT
AGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
CTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCATTCTTGCGTTAACAGC
GAAGCAGATCGAAAACAAAGCCTTCCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATC
TTGCATTCCTGCGTTAACAGCGAAGCAGATCG
Found at i:43092690 original size:41 final size:41
Alignment explanation
Indices: 43092645--43092727 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
43092635 AAAGAAGCAG
*
43092645 ATCATGCCTTCATGCGTTAACAGTGAAGCAGATCGAAAACA
1 ATCATGCCTTCATGCGTTAACAATGAAGCAGATCGAAAACA
43092686 ATCATGCCTTCATGCGTTAACAATGAAGCAGATCGAAAACA
1 ATCATGCCTTCATGCGTTAACAATGAAGCAGATCGAAAACA
43092727 A
1 A
43092728 AGCCTTGCCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.22
Consensus pattern (41 bp):
ATCATGCCTTCATGCGTTAACAATGAAGCAGATCGAAAACA
Found at i:43092789 original size:127 final size:127
Alignment explanation
Indices: 43092563--43092813 Score: 412
Period size: 127 Copynumber: 2.0 Consensus size: 127
43092553 AAGCAGATCT
* * *
43092563 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGA
1 TGCCTTCATGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGAA
*
43092628 GCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGTGAAGCAGATCGAAAACAATCA
66 GCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAATCA
* **
43092690 TGCCTTCATGCGTTAACAATGAAGCAGATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGAA
1 TGCCTTCATGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGAA
* * *
43092755 GCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGTAGATCGAAAACAA
66 GCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAA
43092814 AGCCTTGCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
127 114 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (127 bp):
TGCCTTCATGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGAA
GCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCGAAGCAGATCGAAAACAATCA
Found at i:43092807 original size:86 final size:86
Alignment explanation
Indices: 43092690--43094171 Score: 2428
Period size: 86 Copynumber: 17.2 Consensus size: 86
43092680 AAAACAATCA
* ** * *
43092690 TGCCTTCATGCGTTAACAATGAAGCAGATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGAA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
43092755 GCTGGTTAAAGAAGCAGATCT
66 GCTGGTTAAAGAAGCAGATCT
* *
43092776 TGCCTTCCTGCGTTAACAGCGAAGTAGATCGAAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
43092841 GCTGGTTAAAGAAGCAGATCT
66 GCTGGTTAAAGAAGCAGATCT
* * * * * *
43092862 TGCCTTCCTGCGTTAACAGCAAAACAAATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAATTGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
* *
43092927 ACTGGTTAAAGAAGCATATCT
66 GCTGGTTAAAGAAGCAGATCT
* * *
43092948 TGCCTTTCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGTCTTGCCTCCATCGGTTGCAGTAGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
43093013 GCTGGTTAAAGAAGCAGATCT
66 GCTGGTTAAAGAAGCAGATCT
*
43093034 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
43093099 GCTGGTTAAAGAAGCAGATCT
66 GCTGGTTAAAGAAGCAGATCT
43093120 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
43093185 GCTGGTTAAAGAAGCAGATCT
66 GCTGGTTAAAGAAGCAGATCT
* * *
43093206 TGCCTTCCTGCATAAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
*
43093271 GCTGGTTAAAGAAACAGATCT
66 GCTGGTTAAAGAAGCAGATCT
* * * * * *
43093292 TGCCTTCCTGCGTTAACTA-CAAAACAAATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAATTG
1 TGCCTTCCTGCGTTAAC-AGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGG
43093356 AGCTGGTTAAAGAAGCAGATCT
65 AGCTGGTTAAAGAAGCAGATCT
* * * *
43093378 TGCCTTTCTGCGTTAACAGCAAAGTAGATCGAAAACAAAGCCTTACCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
*
43093443 GCTAGG-TAAAGAAGTAGATCT
66 GCT-GGTTAAAGAAGCAGATCT
43093464 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
* *
43093529 GCTAGTTAAAGAAGTAGATCT
66 GCTGGTTAAAGAAGCAGATCT
43093550 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
* *
43093615 GCTAGTTAAAGAAGTAGATCT
66 GCTGGTTAAAGAAGCAGATCT
43093636 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
* *
43093701 GCTAGTTAAAGAAGTAGATCT
66 GCTGGTTAAAGAAGCAGATCT
43093722 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
* *
43093787 GCTAGTTAAAGAAGTAGATCT
66 GCTGGTTAAAGAAGCAGATCT
43093808 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
43093873 GCTGGTTAAAGAAGCAGATCT
66 GCTGGTTAAAGAAGCAGATCT
* * * *
43093894 TGCCTTCCTGCGTTAACAGCGAAGCATACCGAAAACAAAGCCTTGCCTCCATCAGTTGTAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
* *
43093959 GCTGGTTAAAAAAACAGATCT
66 GCTGGTTAAAGAAGCAGATCT
* *
43093980 TGTCTTCCTGCGTAAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
*
43094045 GCTAGTTAAAGAAGCAGATCT
66 GCTGGTTAAAGAAGCAGATCT
* * *
43094066 TGCCTTCCTGCGTAAATAGCGAAGCAGATCGCAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
1 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
*
43094131 GCTGGTTAAAGAAACAGATCT
66 GCTGGTTAAAGAAGCAGATCT
*
43094152 TGCCTTCTTGCGTTAACAGC
1 TGCCTTCCTGCGTTAACAGC
43094172 AGACCAGACT
Statistics
Matches: 1308, Mismatches: 84, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
85 2 0.00
86 1303 1.00
87 3 0.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (86 bp):
TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGA
GCTGGTTAAAGAAGCAGATCT
Found at i:43092844 original size:213 final size:213
Alignment explanation
Indices: 43092477--43092899 Score: 702
Period size: 213 Copynumber: 2.0 Consensus size: 213
43092467 AAGTAGATCT
* * * *
43092477 TGCCTTCCTGCGTTAACAGCGAAGTAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCAGTGGA
1 TGCCTTCATGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCAGTGAA
43092542 GCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTT
66 GCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTT
**
43092607 GCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGTGAA
131 GCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCAAA
* *
43092672 GCAGATCGAAAACAATCA
196 ACAAATCGAAAACAATCA
* * *
43092690 TGCCTTCATGCGTTAACAATGAAGCAGATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGAA
1 TGCCTTCATGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCAGTGAA
*
43092755 GCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGTAGATCGAAAACAAAGCCTT
66 GCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTT
* * * *
43092820 GCCTCTATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCAAA
131 GCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCAAA
43092885 ACAAATCGAAAACAA
196 ACAAATCGAAAACAA
43092900 AGCCTTGCCT
Statistics
Matches: 194, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
213 194 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (213 bp):
TGCCTTCATGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCCCCATCGGTTGCAGTGAA
GCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTT
GCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCATGCCTTCATGCGTTAACAGCAAA
ACAAATCGAAAACAATCA
Found at i:43093208 original size:43 final size:43
Alignment explanation
Indices: 43092988--43093210 Score: 138
Period size: 43 Copynumber: 5.2 Consensus size: 43
43092978 GAAAACAAAG
*
43092988 TCTTGCCTCCATCGGTTGCAGTAGAGCTGGTTAAAGAAGCAGA
1 TCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
* * * * * ** *
43093031 TCTTGCCTTCC-T-GCGTTAACAGCGAAGCAGATCGAA-AA-CAAA
1 TCTTGCC-TCCATCG-GTT-GCAGTGGAGCTGGTTAAAGAAGCAGA
* *
43093073 GCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
1 -TCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
* * * * * ** *
43093117 TCTTGCCTTCC-T-GCGTTAACAGCGAAGCAGATCGAA-AA-CAAA
1 TCTTGCC-TCCATCG-GTT-GCAGTGGAGCTGGTTAAAGAAGCAGA
*
43093159 GCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
1 -TCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
43093203 TCTTGCCT
1 TCTTGCCT
43093211 TCCTGCATAA
Statistics
Matches: 125, Mismatches: 39, Indels: 32
0.64 0.20 0.16
Matches are distributed among these distances:
42 35 0.28
43 56 0.45
44 34 0.27
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (43 bp):
TCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGA
Found at i:43094258 original size:44 final size:44
Alignment explanation
Indices: 43094193--43094791 Score: 396
Period size: 44 Copynumber: 13.7 Consensus size: 44
43094183 AAGACCACAG
*
43094193 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGGAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * * ** ** *
43094237 ATCTTATCTTCCTAAGTAGTAGTGAAGCAGATTTAAG-CCACCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * * * * *
43094280 GTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG-TA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * *
43094323 GATCCTATCTCCCTAAGCTGTAGTGGAGTAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
43094368 ATCTTATCTTCCCCTAAGCAGTAGTGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-T-CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * * * * * *
43094413 GTCCTATCTCCCTAAGCAGTAGTGGAGCGGGTCAAAGATGG-TA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * **
43094456 GATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGATGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * * ** *
43094501 ATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTGAAG-CCACCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** * * *
43094544 GTCTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAGATGG-TA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
** * * *
43094587 GATCCAATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGC-A
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** * * * * * *
43094631 GATCCTGCCTTCCTCAGCAGTAGCGGAGCAGATCAAAGATGGTGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
** *
43094676 ATCTTAT-TTTCTCAAGACAGTAGTGGAGCAGATCGAAGACGTCGA
1 ATCTTATCTCCCT-AAG-CAGTAGTGGAGCAGATCGAAGACGGCGA
* * * **
43094721 ATTTTATCTCCCTAAGCATTAGTGGAGCAAATC---G-CATC-A
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
*
43094760 AGTCTTATCTTCCTAAGCAGTAGTGGAGCAGA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
43094792 CAGAACTAAC
Statistics
Matches: 430, Mismatches: 109, Indels: 36
0.75 0.19 0.06
Matches are distributed among these distances:
39 2 0.00
40 29 0.07
41 1 0.00
43 95 0.22
44 232 0.54
45 45 0.10
46 26 0.06
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
Found at i:43094588 original size:131 final size:131
Alignment explanation
Indices: 43094191--43094614 Score: 704
Period size: 131 Copynumber: 3.2 Consensus size: 131
43094181 TGAAGACCAC
* * * *
43094191 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGGAGACGGCGAATCTTATCTTCCTAAGTAG
1 AGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAG
43094256 TAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG
66 TAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG
43094321 T
131 T
*
43094322 AGATCCTATCTCCCTAAGCTGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCCTAAGC
1 AGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTT--CCTAAGC
*
43094387 AGTAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCGGGTCAAAGAT
64 AGTAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGAT
43094452 GGT
129 GGT
**
43094455 AGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGATGAATCTTATCTTCCTAAGCAG
1 AGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAG
* * ** *
43094520 TAGTGAAGCAGATTGAAGCCACCAGTCTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAGATGG
66 TAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG
43094585 T
131 T
*
43094586 AGATCCAATCTCCCTAAGCAGTAGTGGAG
1 AGATCCTATCTCCCTAAGCAGTAGTGGAG
43094615 CAGGTCAAAG
Statistics
Matches: 275, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
131 149 0.54
133 126 0.46
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (131 bp):
AGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAG
TAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG
T
Found at i:43094626 original size:175 final size:177
Alignment explanation
Indices: 43094418--43094749 Score: 445
Period size: 175 Copynumber: 1.9 Consensus size: 177
43094408 CACCAGTCCT
* * * *
43094418 ATCTCCCTAAGCAGTAGTGGAGCGGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGTAGTGGA
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCCTACCTCCCTAAGCAGTAGCGGA
* * * *
43094483 GTAGATCGAAGACGATGAATCTTATCTTCCT-AAG-CAGTAGTGAAGCAGATTGAAG-CCACCAG
66 GCAGATCAAAGACGATGAATCTTAT-TTCCTCAAGACAGTAGTGAAGCAGATCGAAGACCACCAA
43094545 TCTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAGATGGTAGATCCA
130 TCTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAGATGGTAGATCCA
* * *
43094593 ATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCCTGCCTTCCTCAGCAGTAGCGGA
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCCTACCTCCCTAAGCAGTAGCGGA
* * * * ** *
43094658 GCAGATCAAAGATGGTGAATCTTATTTTCTCAAGACAGTAGTGGAGCAGATCGAAGACGTCGAAT
66 GCAGATCAAAGACGATGAATCTTATTTCCTCAAGACAGTAGTGAAGCAGATCGAAGACCACCAAT
* **
43094723 TTTATCTCCCTAAGCATTAGTGGAGCA
131 CTTATCTCCCTAAGCAACAGTGGAGCA
43094750 AATCGCATCA
Statistics
Matches: 133, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
174 4 0.03
175 82 0.62
176 19 0.14
177 28 0.21
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (177 bp):
ATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCCTACCTCCCTAAGCAGTAGCGGA
GCAGATCAAAGACGATGAATCTTATTTCCTCAAGACAGTAGTGAAGCAGATCGAAGACCACCAAT
CTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAGATGGTAGATCCA
Found at i:43094699 original size:264 final size:261
Alignment explanation
Indices: 43094191--43094791 Score: 676
Period size: 264 Copynumber: 2.3 Consensus size: 261
43094181 TGAAGACCAC
** *
43094191 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGGAGACGGCGAATCTTATCTTCCTAAGTAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAGACGATGAATCTTATCTTCCTAAGCAG
* **
43094256 TAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG
65 TAGTGAAGCAGATTGAAGCCACCAGTCCTATCTCCCTAAGCAACAGTGGAGCAGGTCAAAGATGG
* * * * * *
43094321 TAGATCCTATCTCCCTAAGCTGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCCTAAG
130 TAGATCCAATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAATCCTACCTT-CCCTAAG
* ** * * *
43094386 CAGTAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCGGGTCAAAGA
194 CAGTAGCGAAGCAGATCAAAGCCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
*
43094451 TGGT
259 -CGT
* *
43094455 AGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGATGAATCTTATCTTCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AGACGATGAATCTTATCTTCCTAAGCAG
* *
43094520 TAGTGAAGCAGATTGAAGCCACCAGTCTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAGATGG
65 TAGTGAAGCAGATTGAAGCCACCAGTCCTATCTCCCTAAGCAACAGTGGAGCAGGTCAAAGATGG
* * * *
43094585 TAGATCCAATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGC-AGATCCTGCCTT-CCTCAG
130 TAGATCCAATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGA-ATCCTACCTTCCCTAAG
* ***** * ** *
43094648 CAGTAGCGGAGCAGATCAAAGATGGTGAATCTTAT-TTTCTCAAGACAGTAGTGGAGCAGATCGA
194 CAGTAGCGAAGCAGATCAAAG-CCACCAATCCTATCTCCCT-AAG-CAGTAGTGGAGCAGATCAA
43094712 AGACGT
256 AGACGT
* * * * *
43094718 CGAATTTTATCTCCCTAAGCATTAGTGGAGCAAATC--G-C-ATCAAGTCTTATCTTCCTAAGCA
1 AG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGACGATGAA-TCTTATCTTCCTAAGCA
*
43094779 GTAGTGGAGCAGA
64 GTAGTGAAGCAGA
43094792 CAGAACTAAC
Statistics
Matches: 285, Mismatches: 45, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
259 4 0.01
260 30 0.11
261 1 0.00
262 25 0.09
263 14 0.05
264 211 0.74
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (261 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGACGATGAATCTTATCTTCCTAAGCAGT
AGTGAAGCAGATTGAAGCCACCAGTCCTATCTCCCTAAGCAACAGTGGAGCAGGTCAAAGATGGT
AGATCCAATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAATCCTACCTTCCCTAAGCA
GTAGCGAAGCAGATCAAAGCCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACG
T
Found at i:43097318 original size:109 final size:109
Alignment explanation
Indices: 43097107--43097364 Score: 306
Period size: 109 Copynumber: 2.4 Consensus size: 109
43097097 TTCAAAAAAG
* * * * *
43097107 AAAAATTTTCTAAATAAGGCAATATTTTGCATTT-GAAAGTTCGAGAAAGCGTGCCCTAATGTGC
1 AAAAATTTT-AAAATAAGGCAATATTTTGCGTTTGGAAA-TTCGAGAAAACATGCCCTAAGGTGC
* * * *
43097171 TGGGTTTCGATTTTTCTCGTTCGACCTAATAGCCAAATATCCTTTC
64 TAGGTTTCGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTC
*
43097217 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTA
1 AAAAATTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTA
* *
43097282 GGTGTT-GATTTTTCTCATTCAACCAAAT-GACTAAATATCCTTTT
66 GGT-TTCGATTTTTCTCATTCAACCAAATAG-CCAAATATCCTTTC
** * * *
43097326 AAAAATTTCGAAGTAAGGTAATATTTTACGTTTGGAAAT
1 AAAAATTTTAAAATAAGGCAATATTTTGCGTTTGGAAAT
43097365 CTAAGGAAAC
Statistics
Matches: 127, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
108 1 0.01
109 111 0.87
110 15 0.12
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (109 bp):
AAAAATTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTA
GGTTTCGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTC
Found at i:43099407 original size:25 final size:25
Alignment explanation
Indices: 43099377--43099431 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 25
43099367 GACTTTAAAA
43099377 TTTTTAAAAAATTACAAAAAAATAT
1 TTTTTAAAAAATTACAAAAAAATAT
* *
43099402 TTTTT--AAAATTATAAATAAATAT
1 TTTTTAAAAAATTACAAAAAAATAT
43099425 TTTTTAA
1 TTTTTAA
43099432 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 21 0.81
25 5 0.19
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
TTTTTAAAAAATTACAAAAAAATAT
Found at i:43099623 original size:18 final size:17
Alignment explanation
Indices: 43099596--43099630 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43099586 TAGTAAAAAA
*
43099596 TTAAATATATTTATTTTT
1 TTAAAAATATTT-TTTTT
43099614 TTAAAAATATTTTTTTT
1 TTAAAAATATTTTTTTT
43099631 GGCTGACTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTAAAAATATTTTTTTT
Found at i:43102879 original size:3 final size:3
Alignment explanation
Indices: 43102873--43102921 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
43102863 TATCACTGCA
* *
43102873 ATT ATT ATT ATT ATT ATT ATT ATT AAT ATT AAT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
43102921 A
1 A
43102922 GTTTTACTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:43105686 original size:22 final size:23
Alignment explanation
Indices: 43105656--43105701 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
43105646 GGGCTTTATT
*
43105656 TATTTGGTTT-TTATATTT-TTTG
1 TATTCGGTTTATTAT-TTTCTTTG
43105678 TATTCGGTTTATTATTTTCTTTG
1 TATTCGGTTTATTATTTTCTTTG
43105701 T
1 T
43105702 GTATCGGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.13, C:0.04, G:0.13, T:0.70
Consensus pattern (23 bp):
TATTCGGTTTATTATTTTCTTTG
Found at i:43109252 original size:132 final size:131
Alignment explanation
Indices: 43109054--43110198 Score: 1686
Period size: 132 Copynumber: 8.7 Consensus size: 131
43109044 AGATCTGCTT
* * ** * *
43109054 TCTTCGATCGATTCCACTGCCGACCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * **
43109119 CCTCAGGGAGGTAAAATCTGTCATCTTCGATCTAG-TCCACTACTACCGAGGGAGATAAGATCTG
66 CCTCAGGGAGGTAAAATCTGCCATCTT-GATCT-GCTCCACTACTGCTTAGGGAGATAAGATCTG
43109183 TAA
129 TAA
* * * *
43109186 TCTTCAATCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGACTTCAATGTACTCTACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
43109251 CCTCAGGGAGGGAAAATCTGCCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGT
66 CCTCAGGGAGGTAAAATCTGCCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
43109316 AA
130 AA
* * *
43109318 TCTTCAATCTATTCCACTGTTTCCCAGGGAGATAGAATTACCGGCTTCAGTGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
43109383 CCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
43109448 AA
130 AA
* * * * * *
43109450 TATTCAATCTATTCCACTGCTACTCAGGGAGATAGAATTACTAGCTTCAATGTGCTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
43109515 CCTCAGGGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
43109580 AA
130 AA
* * * * *
43109582 TCTTAAATCTATTCCACTGTTGCCTATGGAGATAGAATTACTAGCTTCAATGTGCTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
43109647 CCTCAAGGAGGTAAAATCTGCCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAACATCTGT
66 CCTCAGGGAGGTAAAATCTGCCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
43109712 AA
130 AA
* *
43109714 TCTTCAATCTATTCCACTGTTGCCCATGGAAATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
43109779 CCTCAGGGAGGTAAAATC-GCCATCATTGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
43109843 AA
130 AA
* *
43109845 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTAATGGCTTCAATATACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
43109910 CCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACCG-TCTAGGGAGATAAGATCTA
66 CCTCAGGGAGGTAAAATCTGCCATCTT-GATCTGCTCCACTACTGCT-TAGGGAGATAAGATCTG
43109974 TAA
129 TAA
* * *
43109977 TATTCAATTTATTCCACTGTTGCCCAGGGAGACAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
43110042 CCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTATTG-TCTAAGGAGATAAGATCTG
66 CCTCAGGGAGGTAAAATCTGCCATCTT-GATCTGCTCCACTACTGCT-TAGGGAGATAAGATCTG
43110106 TAA
129 TAA
* * *
43110109 TCTTCAATCTATTCCACTTTTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCTACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
43110174 CCTCAGGGAGGTAAAATCTGCCATC
66 CCTCAGGGAGGTAAAATCTGCCATC
43110199 AACCTGCTCC
Statistics
Matches: 926, Mismatches: 79, Indels: 16
0.91 0.08 0.02
Matches are distributed among these distances:
130 1 0.00
131 130 0.14
132 789 0.85
133 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (131 bp):
TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCTCAGGGAGGTAAAATCTGCCATCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
A
Found at i:43110037 original size:527 final size:529
Alignment explanation
Indices: 43109077--43110198 Score: 1754
Period size: 527 Copynumber: 2.1 Consensus size: 529
43109067 CCACTGCCGA
* * *
43109077 CCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCA
1 CCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
*
43109142 T-CTTCGATCTAGTCCACTACTACCGAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC
66 TCCTTCGATCTAGTCCACTACTACCGAGGGAGATAACATCTGTAATCTTCAATCTATTCCACTGC
* *
43109206 TGCCCAAGGAGATAGAATTACTGACTTCAATGTACTCTACTGTAACCTCAGGGAGGGAAAATCTG
131 TGCCCAAGGAAATAGAATTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAGGGAAAATCTG
*
43109271 CCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACT
196 CCATCATTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACT
* * * *
43109336 GTTTCCCAGGGAGATAGAATTACCGGCTTCAGTGTACTCCACTGTAACCTCAGGGAGGTAAAATC
261 GTTGCCCAGGGAGATAGAATTAACGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATC
* ** *
43109401 CGCCATCCTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCA
326 CGCCATCCTTGATCTACTCCACTACCGCTTAGGGAGATAAGATCTATAATATTCAATCTATTCCA
* * *
43109466 CTGCTACTCAGGGAGATAGAATTACTAGCTTCAATGTGCTCCACTGTAACCTCAGGGAGGTAAAA
391 CTGCTACCCAGGGAGACAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAA
* * *
43109531 TCTGTCATCTTCGATCTGCTCCACTACTACT-TAGGGAGATAAGATCTGTAATCTTAAATCTATT
456 TCTGCCATCTTCGATCTACTCCACTA-TACTCTAAGGAGATAAGATCTGTAATCTTAAATCTATT
43109595 CCACTGTTGC
520 CCACTGTTGC
* * * *
43109605 CTATGGAGATAGAATTACTAGCTTCAATGTGCTCCACTGTAACCTCAAGGAGGTAAAATCTGCCA
1 CCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
* **
43109670 TCCTT-GATCT-GCTCCACTACTGCTTAGGGAGATAACATCTGTAATCTTCAATCTATTCCACTG
66 TCCTTCGATCTAG-TCCACTACTACCGAGGGAGATAACATCTGTAATCTTCAATCTATTCCACTG
* * * *
43109733 TTGCCCATGGAAATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC-
130 CTGCCCAAGGAAATAGAATTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAGGGAAAATCT
* *
43109797 GCCATCATTGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
195 GCCATCATTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCAC
*
43109862 TGTTGCCCAGGGAGATAGAATTAATGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAAT
260 TGTTGCCCAGGGAGATAGAATTAACGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAAT
* *
43109927 CTGCCAT-CTTCGATCTACTCCACTACCG-TCTAGGGAGATAAGATCTATAATATTCAATTTATT
325 CCGCCATCCTT-GATCTACTCCACTACCGCT-TAGGGAGATAAGATCTATAATATTCAATCTATT
* * *
43109990 CCACTGTTGCCCAGGGAGACAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTA
388 CCACTGCTACCCAGGGAGACAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTA
** *
43110055 AAATCTGCCATCTTCGATCTACTCCACTATTGTCTAAGGAGATAAGATCTGTAATCTTCAATCTA
453 AAATCTGCCATCTTCGATCTACTCCACTATACTCTAAGGAGATAAGATCTGTAATCTTAAATCTA
*
43110120 TTCCACTTTTGC
518 TTCCACTGTTGC
*
43110132 CCAGGGAGATAGAATTACTAGCTTCAATGTACTCTACTGTAACCTCAGGGAGGTAAAATCTGCCA
1 CCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
43110197 TC
66 TC
43110199 AACCTGCTCC
Statistics
Matches: 540, Mismatches: 49, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
526 6 0.01
527 362 0.67
528 169 0.31
529 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (529 bp):
CCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
TCCTTCGATCTAGTCCACTACTACCGAGGGAGATAACATCTGTAATCTTCAATCTATTCCACTGC
TGCCCAAGGAAATAGAATTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAGGGAAAATCTG
CCATCATTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACT
GTTGCCCAGGGAGATAGAATTAACGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATC
CGCCATCCTTGATCTACTCCACTACCGCTTAGGGAGATAAGATCTATAATATTCAATCTATTCCA
CTGCTACCCAGGGAGACAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAA
TCTGCCATCTTCGATCTACTCCACTATACTCTAAGGAGATAAGATCTGTAATCTTAAATCTATTC
CACTGTTGC
Found at i:43110140 original size:44 final size:44
Alignment explanation
Indices: 43109098--43110142 Score: 326
Period size: 44 Copynumber: 23.8 Consensus size: 44
43109088 GAATTACTGG
* ** * * *
43109098 CTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTGTCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* * ** * *
43109143 CTTCGATCTAGTCCACTACTACCGAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* * *
43109187 CTTCAATCTATTCCACTGCTGCCCAAGGAGAT-AGAATTACTG--A-
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAG-A-T-CTGTAAT
* * ** ** * **
43109230 CTTCAATGTACTCTACTGTAACCTCAGGGAGGGAAAATCTGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* * ** ** *
43109275 CCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAAT
1 -CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* * * **
43109319 CTTCAATCTATTCCACTGTTTCCCAGGGAGAT-AGA-AT-TACCGG
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTA--AT
* * ** * * * **
43109362 CTTCAGTGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* * * **
43109407 CCTT-GATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAAT
1 -CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* * * * * * *
43109451 ATTCAATCTATTCCACTGCTACTCAGGGAGAT-AGA-AT-TACTAG
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTA--AT
* * ** * * *
43109494 CTTCAATGTGCTCCACTGTAACCTCAGGGAGGTAAAATCTGTCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* * ** * **
43109539 CTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* * * * * *
43109583 CTTAAATCTATTCCACTGTTGCCTATGGAGAT-AGA-AT-TACTAG
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTA--AT
* * ** * * * **
43109626 CTTCAATGTGCTCCACTGTAACCTCAAGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* * ** ** *
43109671 CCTT-GATCTGCTCCACTACTGCTTAGGGAGATAACATCTGTAAT
1 -CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* * * * *
43109715 CTTCAATCTATTCCACTGTTGCCCATGGAAAT-AGA-AT-TACT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* ** * * **
43109756 GGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC-GCCAT
1 --CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* ** ** **
43109802 CATT-GATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 C-TTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* *
43109846 CTTCAATCTATTCCACTGTTGCCCAGGGAGAT-AGA-AT-TAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* ** * * **
43109887 GGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 --CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* *** * * *
43109934 CTTCGATCTACTCCACTACCGTCTAGGGAGATAAGATCTATAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* * * * * *
43109978 ATTCAATTTATTCCACTGTTGCCCAGGGAGA-CAGA-AT-TACT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* ** * * **
43110019 GGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 --CTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAGATCTGTAAT
* * * * *
43110066 CTTCGATCTACTCCACTATTGTCTAAGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
* *
43110110 CTTCAATCTATTCCACTTTTGCCCAGGGAGATA
1 CTTCAATCTACTCCACTGTTGCCCAGGGAGATA
43110143 GAATTACTAG
Statistics
Matches: 689, Mismatches: 258, Indels: 107
0.65 0.24 0.10
Matches are distributed among these distances:
41 16 0.02
42 9 0.01
43 167 0.24
44 358 0.52
45 118 0.17
46 17 0.02
47 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGTAAT
Found at i:43117061 original size:10 final size:10
Alignment explanation
Indices: 43117042--43117092 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 10
43117032 TTATTTTAAG
43117042 AAAAAT-AAA
1 AAAAATAAAA
43117051 AAAAATAAAA
1 AAAAATAAAA
43117061 AGAAAATAAAA
1 A-AAAATAAAA
**
43117072 CAAAAGCAAAA
1 -AAAAATAAAA
*
43117083 AAAAGTAAAA
1 AAAAATAAAA
43117093 GATCACCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 6 0.17
10 13 0.36
11 16 0.44
12 1 0.03
ACGTcount: A:0.82, C:0.04, G:0.06, T:0.08
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:43117092 original size:16 final size:14
Alignment explanation
Indices: 43117043--43117094 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
43117033 TATTTTAAGA
*
43117043 AAAATAAAAAAAAT
1 AAAAGAAAAAAAAT
*
43117057 AAAAAGAAAATAAAAC
1 -AAAAGAAAA-AAAAT
43117073 AAAAGCAAAAAAAAGT
1 AAAAG-AAAAAAAA-T
43117089 AAAAGA
1 AAAAGA
43117095 TCACCTTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 18 0.58
16 13 0.42
ACGTcount: A:0.81, C:0.04, G:0.08, T:0.08
Consensus pattern (14 bp):
AAAAGAAAAAAAAT
Found at i:43118137 original size:19 final size:19
Alignment explanation
Indices: 43118113--43118149 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
43118103 AAATTTTATA
* *
43118113 AAAATTATATATTAATTTG
1 AAAATTAAATAATAATTTG
43118132 AAAATTAAATAATAATTT
1 AAAATTAAATAATAATTT
43118150 ATTAACTGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (19 bp):
AAAATTAAATAATAATTTG
Found at i:43119924 original size:30 final size:30
Alignment explanation
Indices: 43119849--43119913 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
43119839 ATTCCCAATT
*
43119849 ACACACGGTCGTGTGGACCGCCCGTGTACA
1 ACACACGATCGTGTGGACCGCCCGTGTACA
* *
43119879 GCACACGATCGTGTGGACCTCCCGTGTACA
1 ACACACGATCGTGTGGACCGCCCGTGTACA
43119909 ACACA
1 ACACA
43119914 GGCTTGTGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (30 bp):
ACACACGATCGTGTGGACCGCCCGTGTACA
Found at i:43122326 original size:27 final size:27
Alignment explanation
Indices: 43122280--43122351 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
43122270 ACATTGTGCG
* * *
43122280 TCACATGGGCCGCATGTTCAACATACA
1 TCACGTGGGCCACATATTCAACATACA
*
43122307 TCACGTGGGCCACATATTCAACATCCA
1 TCACGTGGGCCACATATTCAACATACA
43122334 TCACGTGGGTCCA-ATATT
1 TCACGTGGG-CCACATATT
43122352 AAAAATGTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 37 0.93
28 3 0.08
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (27 bp):
TCACGTGGGCCACATATTCAACATACA
Done.