Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 21 of 131
Found at i:7042336 original size:11 final size:11
Alignment explanation
Indices: 7042320--7042344 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7042310 ATTTTTTAAC
7042320 TTTAAAATACT
1 TTTAAAATACT
7042331 TTTAAAATACT
1 TTTAAAATACT
7042342 TTT
1 TTT
7042345 TTTTTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTAAAATACT
Found at i:7042359 original size:43 final size:40
Alignment explanation
Indices: 7042304--7042416 Score: 158
Period size: 40 Copynumber: 2.8 Consensus size: 40
7042294 AATATTTTTA
*
7042304 TTTTTT-A-TTTTTTAACTTTAAAATACTTTTAAAATACTTT
1 TTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATAC--T
**
7042344 TTTTTTAAATTTTTTTAATTTTAAAATTTTTTTAAAATACT
1 TTTTTT-AATTTTTTTAATTTTAAAATACTTTTAAAATACT
7042385 TTTTTTAATTTTTTTAATTTTAAAATACTTTT
1 TTTTTTAATTTTTTTAATTTTAAAATACTTTT
7042417 TTTAATTTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
40 30 0.46
41 7 0.11
42 1 0.02
43 27 0.42
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (40 bp):
TTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATACT
Found at i:7042370 original size:17 final size:17
Alignment explanation
Indices: 7042345--7042378 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7042335 AAATACTTTT
*
7042345 TTTTTAAATTTTTTTAA
1 TTTTAAAATTTTTTTAA
7042362 TTTTAAAATTTTTTTAA
1 TTTTAAAATTTTTTTAA
7042379 AATACTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTAAAATTTTTTTAA
Found at i:7042417 original size:43 final size:44
Alignment explanation
Indices: 7042304--7042421 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 44
7042294 AATATTTTTA
*
7042304 TTTTTT-A-TTTTTTAACTTTAAAATAC---TTTTAAAATACTTT
1 TTTTTTAATTTTTTTAATTTTAAAATACTTTTTTTAAAATAC-TT
7042344 TTTTTTAAATTTTTTTAATTTT-AAA-A-TTTTTTTAAAATAC-T
1 TTTTTT-AATTTTTTTAATTTTAAAATACTTTTTTTAAAATACTT
7042385 TTTTTTAATTTTTTTAATTTTAAAATACTTTTTTTAA
1 TTTTTTAATTTTTTTAATTTTAAAATACTTTTTTTAA
7042422 TTTTTAAAAT
Statistics
Matches: 68, Mismatches: 1, Indels: 15
0.81 0.01 0.18
Matches are distributed among these distances:
40 21 0.31
41 11 0.16
42 5 0.07
43 31 0.46
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (44 bp):
TTTTTTAATTTTTTTAATTTTAAAATACTTTTTTTAAAATACTT
Found at i:7042418 original size:20 final size:21
Alignment explanation
Indices: 7042393--7042432 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
7042383 CTTTTTTTAA
7042393 TTTTTTTAA-TTTTAAAATAC
1 TTTTTTTAATTTTTAAAATAC
7042413 TTTTTTTAATTTTTAAAATA
1 TTTTTTTAATTTTTAAAATA
7042433 AATTTTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTTTTAATTTTTAAAATAC
Found at i:7042438 original size:20 final size:20
Alignment explanation
Indices: 7042395--7042439 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7042385 TTTTTTAATT
**
7042395 TTTTTAATTTTAAAATACTT
1 TTTTTAATTTTAAAATACAA
7042415 TTTTTAATTTTTAAAATA-AA
1 TTTTTAA-TTTTAAAATACAA
7042435 TTTTT
1 TTTTT
7042440 GGTATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTAATTTTAAAATACAA
Found at i:7042438 original size:21 final size:20
Alignment explanation
Indices: 7042394--7042439 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
7042384 TTTTTTTAAT
**
7042394 TTTTTTAATTTTAAAATACT
1 TTTTTTAATTTTAAAATAAA
7042414 TTTTTTAATTTTTAAAATAAA
1 TTTTTTAA-TTTTAAAATAAA
7042435 TTTTT
1 TTTTT
7042440 GGTATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTTAATTTTAAAATAAA
Found at i:7043312 original size:13 final size:13
Alignment explanation
Indices: 7043294--7043321 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7043284 GCTTATCACG
7043294 TGTCTTGCTGTAT
1 TGTCTTGCTGTAT
7043307 TGTCTTGCTGTAT
1 TGTCTTGCTGTAT
7043320 TG
1 TG
7043322 AGGTATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.25, T:0.54
Consensus pattern (13 bp):
TGTCTTGCTGTAT
Found at i:7048596 original size:25 final size:24
Alignment explanation
Indices: 7048548--7048615 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
7048538 TTTCGAGCCA
7048548 TATAACGAGAAGCTCATGTAAGCTG
1 TATAACGAGAAGCTCATG-AAGCTG
7048573 TATAACGAGAAGCTCAATCG-AGCTG
1 TATAACGAGAAGCTC-AT-GAAGCTG
* * *
7048598 TATATCAAAAAGCTCATG
1 TATAACGAGAAGCTCATG
7048616 CGAGCCAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
23 1 0.03
24 2 0.05
25 32 0.84
26 2 0.05
27 1 0.03
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (24 bp):
TATAACGAGAAGCTCATGAAGCTG
Found at i:7048619 original size:25 final size:25
Alignment explanation
Indices: 7048530--7048620 Score: 67
Period size: 25 Copynumber: 3.6 Consensus size: 25
7048520 CAGGTAAACG
* * ** *
7048530 AAAAGCTCTTTCGAGCCATATAACG
1 AAAAGCTCATGCGAGCTGTATAACA
* ** *
7048555 AGAAGCTCATGTAAGCTGTATAACG
1 AAAAGCTCATGCGAGCTGTATAACA
* *
7048580 AGAAGCTCAAT-CGAGCTGTATATCA
1 AAAAGCTC-ATGCGAGCTGTATAACA
7048605 AAAAGCTCATGCGAGC
1 AAAAGCTCATGCGAGC
7048621 CAAATATCAG
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
24 2 0.04
25 48 0.92
26 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (25 bp):
AAAAGCTCATGCGAGCTGTATAACA
Found at i:7065553 original size:22 final size:21
Alignment explanation
Indices: 7065528--7065579 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
7065518 ATATAAACTA
*
7065528 ATAATAATACAGTAATAATAAT
1 ATAATAA-ACAGTAATAACAAT
*
7065550 ATAAATAAACAGTATTAACAAT
1 AT-AATAAACAGTAATAACAAT
7065572 ATAATAAA
1 ATAATAAA
7065580 AAACTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 6 0.22
22 16 0.59
23 5 0.19
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.29
Consensus pattern (21 bp):
ATAATAAACAGTAATAACAAT
Found at i:7080090 original size:2 final size:2
Alignment explanation
Indices: 7080083--7080138 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
7080073 TCATTACCAT
7080083 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7080125 CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA
7080139 TATTCATGAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7084645 original size:26 final size:26
Alignment explanation
Indices: 7084609--7084664 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
7084599 AAGACTAGAA
*
7084609 GACTTCCAGCTTCTAAGCACAATTTT
1 GACTTCCAGCTTCTAAGAACAATTTT
7084635 GACTTCCAGCTTCTAAGAACAATTTT
1 GACTTCCAGCTTCTAAGAACAATTTT
7084661 GACT
1 GACT
7084665 CAGTCAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (26 bp):
GACTTCCAGCTTCTAAGAACAATTTT
Found at i:7091373 original size:2 final size:2
Alignment explanation
Indices: 7091366--7091414 Score: 71
Period size: 2 Copynumber: 24.0 Consensus size: 2
7091356 NNNNNNNNNA
* *
7091366 AT AT AT AT ACG AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7091409 AT AT AT
1 AT AT AT
7091415 GCTTAACAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 41 0.98
3 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7092060 original size:41 final size:41
Alignment explanation
Indices: 7092015--7092200 Score: 282
Period size: 41 Copynumber: 4.5 Consensus size: 41
7092005 CAACAATTAG
* * *
7092015 CCTGCTAGACTTAAAGTCCGAATTATTTCACCGGCCTTAAA
1 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
*
7092056 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAG
1 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
* * * *
7092097 CCTGCTAGATTTTAAGGCTGAATTATATCACCAGCCTTAAG
1 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
* *
7092138 CCTGCTAGACTTTATGTTTGAATTATATCACCGGCCTTAAA
1 CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
7092179 CCTGCTAGACTTTAAGTCTGAA
1 CCTGCTAGACTTTAAGTCTGAA
7092201 AATTTCAATT
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 130 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (41 bp):
CCTGCTAGACTTTAAGTCTGAATTATATCACCGGCCTTAAA
Found at i:7109063 original size:6 final size:6
Alignment explanation
Indices: 7109040--7109086 Score: 76
Period size: 6 Copynumber: 7.5 Consensus size: 6
7109030 TTCCAAATAA
7109040 TTTCAT TTCTCTAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
1 TTTCAT TT-TC-AT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
7109087 GGAGAAAACC
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 31 0.79
7 4 0.10
8 4 0.10
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTCAT
Found at i:7111742 original size:9 final size:9
Alignment explanation
Indices: 7111728--7111865 Score: 57
Period size: 9 Copynumber: 14.0 Consensus size: 9
7111718 TTAAAATACT
7111728 TTTTTTAAA
1 TTTTTTAAA
7111737 TTTTTTAAA
1 TTTTTTAAA
7111746 --TTTTAAA
1 TTTTTTAAA
7111753 CTTTTTTTAAAA
1 --TTTTTT-AAA
7111765 TACTTTTTAAAATA
1 T--TTTTT--AA-A
*
7111779 TTTTTTTAA
1 TTTTTTAAA
*
7111788 TTTTTTTAA
1 TTTTTTAAA
*
7111797 TTTTTTTAA
1 TTTTTTAAA
*
7111806 -TTTTAAAA
1 TTTTTTAAA
*
7111814 TATTTTAAAAA
1 T-TTTT-TAAA
7111825 TATTTTTAAAATA
1 T-TTTTT--AA-A
*
7111838 CTTTTTTTAA
1 -TTTTTTAAA
7111848 TTTTTTAAA
1 TTTTTTAAA
*
7111857 ATTTTTAAA
1 TTTTTTAAA
7111866 ATAAAAATGG
Statistics
Matches: 106, Mismatches: 7, Indels: 32
0.73 0.05 0.22
Matches are distributed among these distances:
7 7 0.07
8 6 0.06
9 44 0.42
10 7 0.07
11 15 0.14
12 15 0.14
13 9 0.08
14 3 0.03
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:7111742 original size:30 final size:27
Alignment explanation
Indices: 7111706--7111763 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 27
7111696 ATTATTTTTT
*
7111706 ATTTTTTCAATTTTAAAATACTTTTTTTAA
1 ATTTTTTAAATTTT--AA-ACTTTTTTTAA
7111736 ATTTTTTAAATTTTAAACTTTTTTTAA
1 ATTTTTTAAATTTTAAACTTTTTTTAA
7111763 A
1 A
7111764 ATACTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 12 0.44
28 2 0.07
30 13 0.48
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.60
Consensus pattern (27 bp):
ATTTTTTAAATTTTAAACTTTTTTTAA
Found at i:7111799 original size:60 final size:60
Alignment explanation
Indices: 7111727--7111865 Score: 199
Period size: 60 Copynumber: 2.3 Consensus size: 60
7111717 TTTAAAATAC
* * *
7111727 TTTTTTTAAATTTTTTAAATTTTAAACTTTTTTTAAAATACTTTTTAAAATA-TTTTTTTAA
1 TTTTTTT-AATTTTTTAAATTTTAAAATATTTTAAAAATA-TTTTTAAAATACTTTTTTTAA
*
7111788 TTTTTTTAATTTTTTTAATTTTAAAATATTTTAAAAATATTTTTAAAATACTTTTTTTAA
1 TTTTTTTAATTTTTTAAATTTTAAAATATTTTAAAAATATTTTTAAAATACTTTTTTTAA
* *
7111848 TTTTTTAAAATTTTTAAA
1 TTTTTTTAATTTTTTAAA
7111866 ATAAAAATGG
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
59 11 0.16
60 52 0.74
61 7 0.10
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (60 bp):
TTTTTTTAATTTTTTAAATTTTAAAATATTTTAAAAATATTTTTAAAATACTTTTTTTAA
Found at i:7111826 original size:11 final size:10
Alignment explanation
Indices: 7111805--7111868 Score: 58
Period size: 10 Copynumber: 6.1 Consensus size: 10
7111795 AATTTTTTTA
7111805 ATTTTAAAAT
1 ATTTTAAAAT
7111815 ATTTTAAAAAT
1 ATTTT-AAAAT
7111826 ATTTTTAAAAT
1 A-TTTTAAAAT
**
7111837 ACTTTTTTTAAT
1 A--TTTTAAAAT
*
7111849 TTTTTAAAAT
1 ATTTTAAAAT
7111859 -TTTTAAAAT
1 ATTTTAAAAT
7111868 A
1 A
7111869 AAAATGGGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
9 9 0.20
10 12 0.27
11 12 0.27
12 12 0.27
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:7111842 original size:12 final size:11
Alignment explanation
Indices: 7111746--7111868 Score: 77
Period size: 11 Copynumber: 11.9 Consensus size: 11
7111736 ATTTTTTAAA
* *
7111746 TTTTAAACTTT
1 TTTTAAAATAT
7111757 TTTTAAAATACT
1 TTTTAAAATA-T
7111769 TTTTAAAATAT
1 TTTTAAAATAT
**
7111780 TTTTTTAAT-T
1 TTTTAAAATAT
*
7111790 TTTT-TAAT-T
1 TTTTAAAATAT
*
7111799 TTTT----TAA
1 TTTTAAAATAT
7111806 TTTTAAAATAT
1 TTTTAAAATAT
*
7111817 TTTAAAAATAT
1 TTTTAAAATAT
7111828 TTTTAAAATACT
1 TTTTAAAATA-T
**
7111840 TTTTTTAAT-T
1 TTTTAAAATAT
7111850 TTTT-AAA-AT
1 TTTTAAAATAT
7111859 TTTTAAAATA
1 TTTTAAAATA
7111869 AAAATGGGCT
Statistics
Matches: 91, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
6 1 0.01
7 4 0.04
9 16 0.18
10 13 0.14
11 38 0.42
12 19 0.21
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:7121350 original size:18 final size:20
Alignment explanation
Indices: 7121306--7121351 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
7121296 CCCTAACAAA
7121306 TTCTTCTATTCTCTCATTCTT
1 TTCTTCTATTCTCT-ATTCTT
**
7121327 CCCTTCT-TTCTCT-TTCTT
1 TTCTTCTATTCTCTATTCTT
7121345 TTCTTCT
1 TTCTTCT
7121352 CTGTTGGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
18 10 0.48
20 6 0.29
21 5 0.24
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (20 bp):
TTCTTCTATTCTCTATTCTT
Found at i:7123332 original size:8 final size:8
Alignment explanation
Indices: 7123315--7123351 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
7123305 CTTTATATGC
7123315 AAAAAC-A
1 AAAAACAA
7123322 AAAAACAA
1 AAAAACAA
7123330 AAAAACAA
1 AAAAACAA
7123338 AAAAA-AA
1 AAAAACAA
7123345 ACAAAAC
1 A-AAAAC
7123352 CATTGAGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 9 0.33
8 18 0.67
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAACAA
Found at i:7128421 original size:45 final size:45
Alignment explanation
Indices: 7128357--7129127 Score: 777
Period size: 45 Copynumber: 17.3 Consensus size: 45
7128347 CTACATTGGA
* ** *
7128357 AAGATAAGATCTGCTATCTTCGATCTACTTCGCTGCTGATACTGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * * * ***
7128402 AAGACAAGATCTACAATCTTCGACCTA-TTCCACTGCTGCT-CAAGG
1 AAGACAAGATCTGCTATCTTCGATCTACTT-CGCTGCCAATAC-AGG
* * *
7128447 -AGACAATATCTGCTATATTC-AGTCTACTTCGCTACCAATACAGG
1 AAGACAAGATCTGCTATCTTCGA-TCTACTTCGCTGCCAATACAGG
*
7128491 AAGACAAGA-CTTGCTATCTTCGATCTACTTCGCTGCCAATACAAG
1 AAGACAAGATC-TGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * * * *
7128536 AAGACAAGATTTGCTATCTTTGATCCACTTTGCTGCCAATATAGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
7128581 AAGACAAGATCTGCTATCTTC-AGTCTACTTCGCTGCCAATACAGG
1 AAGACAAGATCTGCTATCTTCGA-TCTACTTCGCTGCCAATACAGG
** *
7128626 AAGACAAGA-CTTGCTATCTTTAATCTACTTCGCTACCAATACAGG
1 AAGACAAGATC-TGCTATCTTCGATCTACTTCGCTGCCAATACAGG
*
7128671 AAGACAAGATCTGCTATCTTC-AGTCTACTTCGCTACCAATACAGG
1 AAGACAAGATCTGCTATCTTCGA-TCTACTTCGCTGCCAATACAGG
7128716 AAGACAAGA-CTTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
1 AAGACAAGATC-TGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * * * ***
7128761 AA-ACAAGATCTGCAATCTTCGACCTACTCCACTGCTGCT-CAGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * * *
7128804 GAGACAAAATCTGCTATCTTC-A-GT-CTTCGCTGCTAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * *
7128846 AAGACAAGA-CTTGCTATCTTCGACCTACTTCACTGCCAATACAAG
1 AAGACAAGATC-TGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * * * * ***
7128891 AAGACAAGATCTGCAATCTTTGACCTACTCCACTGCTGCT-CAGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * * *
7128935 GAGACAAGATATGCTATCTTC-AGTCTGCTTCGCTGCCAATATAGG
1 AAGACAAGATCTGCTATCTTCGA-TCTACTTCGCTGCCAATACAGG
* *
7128980 AAGACAAGA-CTTGCTATCTTCAATCTATTTCGCTGCCAATACAGG
1 AAGACAAGATC-TGCTATCTTCGATCTACTTCGCTGCCAATACAGG
* * * * *
7129025 AAGACAATATCTGCTATCTTTGATCCACTTCGTTGCCAATATAGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
** *
7129070 AAGACAAGATCTGCTATCTTTAACCTACTTCGCTGCCAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
7129115 AAGACAAGATCTG
1 AAGACAAGATCTG
7129128 TAATTTTTAG
Statistics
Matches: 603, Mismatches: 94, Indels: 58
0.80 0.12 0.08
Matches are distributed among these distances:
41 10 0.02
42 22 0.04
43 9 0.01
44 110 0.18
45 445 0.74
46 7 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (45 bp):
AAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGG
Found at i:7130100 original size:8 final size:7
Alignment explanation
Indices: 7130077--7130127 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
7130067 TGGCCTCTCA
7130077 TTTTTC-
1 TTTTTCT
7130083 TTTTTCT
1 TTTTTCT
*
7130090 TTTTTCG
1 TTTTTCT
7130097 TTTTTCT
1 TTTTTCT
7130104 TTTTT-T
1 TTTTTCT
7130110 TTCTTT-T
1 TT-TTTCT
*
7130117 TGTTTCT
1 TTTTTCT
7130124 TTTT
1 TTTT
7130128 CAAGTGAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
6 12 0.32
7 26 0.68
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:7130100 original size:14 final size:13
Alignment explanation
Indices: 7130077--7130128 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 13
7130067 TGGCCTCTCA
7130077 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
7130090 TTTTTCGTTTTTCT
1 TTTTTC-TTTTTCT
7130104 TTTTT-TTTCTT-T
1 TTTTTCTTT-TTCT
7130116 TTGTTTCTTTTTC
1 TT-TTTCTTTTTC
7130129 AAGTGAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
12 6 0.18
13 13 0.38
14 15 0.44
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.83
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:7130111 original size:17 final size:16
Alignment explanation
Indices: 7130077--7130128 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
7130067 TGGCCTCTCA
7130077 TTTTTCTTTTTC---T
1 TTTTTCTTTTTCTTTT
7130090 TTTTTCGTTTTTCTTTT
1 TTTTTC-TTTTTCTTTT
* *
7130107 TTTTTCTTTTTGTTTC
1 TTTTTCTTTTTCTTTT
7130123 TTTTTC
1 TTTTTC
7130129 AAGTGAAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
13 6 0.18
14 6 0.18
16 14 0.42
17 7 0.21
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.83
Consensus pattern (16 bp):
TTTTTCTTTTTCTTTT
Found at i:7130112 original size:10 final size:10
Alignment explanation
Indices: 7130077--7130127 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
7130067 TGGCCTCTCA
7130077 TTTTTCTTTT
1 TTTTTCTTTT
**
7130087 TCTTTT-TTCG
1 T-TTTTCTTTT
7130097 TTTTTCTTTT
1 TTTTTCTTTT
7130107 TTTTTCTTTT
1 TTTTTCTTTT
*
7130117 TGTTTCTTTT
1 TTTTTCTTTT
7130127 T
1 T
7130128 CAAGTGAAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 4 0.12
10 26 0.76
11 4 0.12
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:7139845 original size:8 final size:8
Alignment explanation
Indices: 7139803--7139850 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
7139793 CGAGTAAAAC
7139803 AAAAAATA
1 AAAAAATA
*
7139811 CAATAAATA
1 -AAAAAATA
7139820 AAATAAATA
1 AAA-AAATA
**
7139829 AAACTATA
1 AAAAAATA
7139837 AAAAAATA
1 AAAAAATA
7139845 AAAAAA
1 AAAAAA
7139851 ATGTGTGTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
8 17 0.53
9 15 0.47
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (8 bp):
AAAAAATA
Found at i:7142288 original size:94 final size:94
Alignment explanation
Indices: 7142127--7142303 Score: 293
Period size: 94 Copynumber: 1.9 Consensus size: 94
7142117 TTATGTCAAA
* * * **
7142127 TAAAAATATAAAGATTAAATCTTAAATTTTAGTTTACTAGAGGGATCAAAACTGAATTTTTACCA
1 TAAAAATATAAAGATTAAATCTTAAATTTGAGTTTACTAGAGGGACCAAAACTAAAAATTTACCA
7142192 TTATAATTGAAATGGCAAGCAAAAGCATG
66 TTATAATTGAAATGGCAAGCAAAAGCATG
7142221 TAAAAATATAAAGATTAAATCTTAAATTTGAGTTTAAC-AGAGGGACCAAAACTAAAAATTTACC
1 TAAAAATATAAAGATTAAATCTTAAATTTGAGTTT-ACTAGAGGGACCAAAACTAAAAATTTACC
7142285 ATTATAATTGAAATGGCAA
65 ATTATAATTGAAATGGCAA
7142304 AAAAAAAAAA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 75 0.97
95 2 0.03
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.31
Consensus pattern (94 bp):
TAAAAATATAAAGATTAAATCTTAAATTTGAGTTTACTAGAGGGACCAAAACTAAAAATTTACCA
TTATAATTGAAATGGCAAGCAAAAGCATG
Found at i:7142359 original size:101 final size:95
Alignment explanation
Indices: 7142127--7142361 Score: 287
Period size: 94 Copynumber: 2.4 Consensus size: 95
7142117 TTATGTCAAA
* * * **
7142127 TAAAAATATAAAGATTAAATCTTAAATTTTAGTTT-ACTAGAGGGATCAAAACTGAATTTTTACC
1 TAAAAATATAAAGATTAAATCTTAAATTTGAGTTTAACTAGAGGGACCAAAACTAAAAATTTACC
** * *
7142191 ATTATAATTGAAATGGCAAGCAAAAGCATG
66 ATTATAATTGAAATGGCAAAAAAAAGAAGG
7142221 TAAAAATATAAAGATTAAATCTTAAATTTGAGTTTAAC-AGAGGGACCAAAACTAAAAATTTACC
1 TAAAAATATAAAGATTAAATCTTAAATTTGAGTTTAACTAGAGGGACCAAAACTAAAAATTTACC
7142285 ATTATAATTGAAATGGCAAAAAAAAAAAAAAAGAAGG
66 ATTATAATTGAAATGGC-------AAAAAAAAGAAGG
*
7142322 TAAAAATATAAAGATTAAA-CATTATATTTGAGTTTAACTA
1 TAAAAATATAAAGATTAAATC-TTAAATTTGAGTTTAACTA
7142362 TCAAAACTGA
Statistics
Matches: 121, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
94 73 0.60
95 2 0.02
100 1 0.01
101 44 0.36
102 1 0.01
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.29
Consensus pattern (95 bp):
TAAAAATATAAAGATTAAATCTTAAATTTGAGTTTAACTAGAGGGACCAAAACTAAAAATTTACC
ATTATAATTGAAATGGCAAAAAAAAGAAGG
Found at i:7152062 original size:9 final size:11
Alignment explanation
Indices: 7152029--7152058 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7152019 CTATCATTTC
*
7152029 GTTATAATATT
1 GTTATTATATT
7152040 GTTATTATATT
1 GTTATTATATT
7152051 GTTATTAT
1 GTTATTAT
7152059 TGTTCGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (11 bp):
GTTATTATATT
Found at i:7155446 original size:17 final size:17
Alignment explanation
Indices: 7155424--7155458 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7155414 ATTTTAGTCA
*
7155424 TGGAAGTTGTAGGTTTT
1 TGGAAGTCGTAGGTTTT
7155441 TGGAAGTCGTAGGTTTT
1 TGGAAGTCGTAGGTTTT
7155458 T
1 T
7155459 ACTTAATTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.46
Consensus pattern (17 bp):
TGGAAGTCGTAGGTTTT
Found at i:7157787 original size:13 final size:13
Alignment explanation
Indices: 7157769--7157796 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7157759 TCAACATTTC
7157769 ATATAATTAATAT
1 ATATAATTAATAT
7157782 ATATAATTAATAT
1 ATATAATTAATAT
7157795 AT
1 AT
7157797 GCAACAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATAATTAATAT
Found at i:7159646 original size:19 final size:19
Alignment explanation
Indices: 7159622--7159678 Score: 87
Period size: 19 Copynumber: 3.0 Consensus size: 19
7159612 AATTTTTGAG
* * *
7159622 GATATGCTATCTTATATAT
1 GATATGCAATCGTAGATAT
7159641 GATATGCAATCGTAGATAT
1 GATATGCAATCGTAGATAT
7159660 GATATGCAATCGTAGATAT
1 GATATGCAATCGTAGATAT
7159679 TGCAATCGNN
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.37
Consensus pattern (19 bp):
GATATGCAATCGTAGATAT
Found at i:7162889 original size:181 final size:181
Alignment explanation
Indices: 7162577--7162940 Score: 647
Period size: 181 Copynumber: 2.0 Consensus size: 181
7162567 CCTCCCGCCG
* * *
7162577 CATCCAGTAGTCGGTTCAGACTGTCATATGGAGTGGCTCAACAACAGGTTCCTTTATGCTCAAAA
1 CATCCAGTAGTCGGTTCAGACAGTCATACGGAGTGGCTCAACAACAGGGTCCTTTATGCTCAAAA
* *
7162642 GTGCCTATGGAAGAATCCGAGGTAGGTCATGGAACCCAAAAGTGATAGTTTGGCAACTTTCGTGG
66 GTGCCTATGGAAGAATCCGAGGTAGGTCATGGAACCCAAAAGAGATAGTTTGGCAACTTCCGTGG
7162707 AAATTTTCGAGGCCTCAAAGGGTTAAATTCTTCTTTTGGCTTGCCCTTCAA
131 AAATTTTCGAGGCCTCAAAGGGTTAAATTCTTCTTTTGGCTTGCCCTTCAA
*
7162758 CATCTAGTAGTCGGTTCAGACAGTCATACGGAGTGGCTCAACAACAGGGTCCTTTATGCTCAAAA
1 CATCCAGTAGTCGGTTCAGACAGTCATACGGAGTGGCTCAACAACAGGGTCCTTTATGCTCAAAA
* *
7162823 GTGCCTATGGAAGAATCTGAGGTAGGTTATGGAACCCAAAAGAGATAGTTTGGCAACTTCCGTGG
66 GTGCCTATGGAAGAATCCGAGGTAGGTCATGGAACCCAAAAGAGATAGTTTGGCAACTTCCGTGG
*
7162888 AAATTTTTGAGGCCTCAAAGGGTTAAATTCTTCTTTTGGCTTGCCCTTCAA
131 AAATTTTCGAGGCCTCAAAGGGTTAAATTCTTCTTTTGGCTTGCCCTTCAA
7162939 CA
1 CA
7162941 ACGTATGCGA
Statistics
Matches: 174, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
181 174 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (181 bp):
CATCCAGTAGTCGGTTCAGACAGTCATACGGAGTGGCTCAACAACAGGGTCCTTTATGCTCAAAA
GTGCCTATGGAAGAATCCGAGGTAGGTCATGGAACCCAAAAGAGATAGTTTGGCAACTTCCGTGG
AAATTTTCGAGGCCTCAAAGGGTTAAATTCTTCTTTTGGCTTGCCCTTCAA
Found at i:7163270 original size:15 final size:15
Alignment explanation
Indices: 7163250--7163280 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7163240 AGGGTATCCC
7163250 ATGATTACATCAAGT
1 ATGATTACATCAAGT
7163265 ATGATTACATCAAGT
1 ATGATTACATCAAGT
7163280 A
1 A
7163281 GACAGCCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (15 bp):
ATGATTACATCAAGT
Found at i:7165833 original size:1 final size:1
Alignment explanation
Indices: 7165829--7165858 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
7165819 CTGTTCTTTT
*
7165829 AAAAAAATAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7165859 CCTGTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.97, C:0.00, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:7185344 original size:2 final size:2
Alignment explanation
Indices: 7185339--7185363 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7185329 ATATCTTGTT
7185339 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7185364 CAATCNNNNN
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7191499 original size:16 final size:16
Alignment explanation
Indices: 7191478--7191509 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7191468 ATAATTGAGA
*
7191478 AATAAAATCTAAACTT
1 AATAAAATCCAAACTT
7191494 AATAAAATCCAAACTT
1 AATAAAATCCAAACTT
7191510 GTCACTGTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
AATAAAATCCAAACTT
Found at i:7192588 original size:22 final size:22
Alignment explanation
Indices: 7192528--7192585 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
7192518 AATCTTCAAG
7192528 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
7192547 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
7192569 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
7192586 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:7199588 original size:21 final size:21
Alignment explanation
Indices: 7199559--7199601 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7199549 CTTACCAATC
* *
7199559 AATTTATTCCATACTCAAGTT
1 AATTCATTCCATACTAAAGTT
7199580 AATTCATTCCATACTAAAGTT
1 AATTCATTCCATACTAAAGTT
7199601 A
1 A
7199602 GGGTTAATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.40
Consensus pattern (21 bp):
AATTCATTCCATACTAAAGTT
Found at i:7200188 original size:20 final size:21
Alignment explanation
Indices: 7200152--7200191 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7200142 AATCAATATC
7200152 TAATTTATTTTATAATTTTAA
1 TAATTTATTTTATAATTTTAA
7200173 TAATTT-TTTTCA-AATTTTA
1 TAATTTATTTT-ATAATTTTA
7200192 TAAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TAATTTATTTTATAATTTTAA
Found at i:7201839 original size:5 final size:5
Alignment explanation
Indices: 7201831--7201856 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7201821 GAGATGGAAT
7201831 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
7201857 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:7201856 original size:26 final size:26
Alignment explanation
Indices: 7201805--7201856 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7201795 TGAAGTTTTC
* * *
7201805 TCGAATCGAGTCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
7201831 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
7201857 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:7205201 original size:121 final size:121
Alignment explanation
Indices: 7204987--7205228 Score: 385
Period size: 121 Copynumber: 2.0 Consensus size: 121
7204977 TCTGATACCA
*
7204987 AGGCGACACAGGTGAGTAAGAAGCCGGAATATTTGAAATTAATAGATCATAACAGCAAGTATGCT
1 AGGCGACACAGGTGAGTAAGAAGCCGGAATATTTGAAATTAATAGATCATAACAGCAAGCATGCT
* *
7205052 ATGCCAAAACATCGGCCTCTCCTCTTTGGCCTTTTAAACAGGCACTGCCTTTTAGC
66 ATGCCAAAACATCGGCCTCTCCTCTTTGGCCCTTTAAACAGGCACTGCCTATTAGC
* * ** * *
7205108 AGGCGACACAGGTGAGTAATAAGCTGGGGTATTTGAAATTAATAGATCATAACAGTAGGCATGCT
1 AGGCGACACAGGTGAGTAAGAAGCCGGAATATTTGAAATTAATAGATCATAACAGCAAGCATGCT
* *
7205173 ATGCCAAAACATCGGTCTTTCCTCTTTGGCCCTTTAAACAGGCACTGCCTATTAGC
66 ATGCCAAAACATCGGCCTCTCCTCTTTGGCCCTTTAAACAGGCACTGCCTATTAGC
7205229 TGTTAATCTC
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
121 110 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (121 bp):
AGGCGACACAGGTGAGTAAGAAGCCGGAATATTTGAAATTAATAGATCATAACAGCAAGCATGCT
ATGCCAAAACATCGGCCTCTCCTCTTTGGCCCTTTAAACAGGCACTGCCTATTAGC
Found at i:7220392 original size:19 final size:19
Alignment explanation
Indices: 7220368--7220405 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7220358 TGAAAAATCA
7220368 GATGAATTTTTCAAGTTTC
1 GATGAATTTTTCAAGTTTC
7220387 GATGAATTTTTCAAGTTTC
1 GATGAATTTTTCAAGTTTC
7220406 TCGATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
GATGAATTTTTCAAGTTTC
Found at i:7229977 original size:11 final size:11
Alignment explanation
Indices: 7229961--7229985 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7229951 TCTATTTTAT
7229961 AAAAAAACAAA
1 AAAAAAACAAA
7229972 AAAAAAACAAA
1 AAAAAAACAAA
7229983 AAA
1 AAA
7229986 TCATCATGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:7231136 original size:158 final size:159
Alignment explanation
Indices: 7230944--7231263 Score: 633
Period size: 158 Copynumber: 2.0 Consensus size: 159
7230934 TTTTTCACAT
7230944 TAACCTTAATTTCTAATCAGCCTATCATCAATTAGAAATTAGTTATAAGAGTATTTATACATATT
1 TAACCTTAATTTCTAATCAGCCTATCATCAATTAGAAATTAGTTATAAGAGTATTTATACATATT
7231009 TGACCCATACTTTATTTATTAACTGAAGTCAAATAAATTTTAATCAAATTAGATCGCTTTTTTAG
66 TGACCCATACTTTATTTATTAACTGAAGTCAAATAAATTTTAATCAAATTAGATCGCTTTTTTAG
7231074 ACTAATATTTCATAATAA-AAATAATATA
131 ACTAATATTTCATAATAATAAATAATATA
7231102 TAACCTTAATTTCTAATCAGCCTATCATCAATTAGAAATTAGTTATAAGAGTATTTATACATATT
1 TAACCTTAATTTCTAATCAGCCTATCATCAATTAGAAATTAGTTATAAGAGTATTTATACATATT
7231167 TGACCCATACTTTATTTATTAACTGAAGTCAAATAAATTTTAATCAAATTAGATCGCTTTTTTAG
66 TGACCCATACTTTATTTATTAACTGAAGTCAAATAAATTTTAATCAAATTAGATCGCTTTTTTAG
7231232 ACTAATATTTCATAATAATAAATAATATA
131 ACTAATATTTCATAATAATAAATAATATA
7231261 TAA
1 TAA
7231264 TTATAATTAT
Statistics
Matches: 161, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
158 148 0.92
159 13 0.08
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (159 bp):
TAACCTTAATTTCTAATCAGCCTATCATCAATTAGAAATTAGTTATAAGAGTATTTATACATATT
TGACCCATACTTTATTTATTAACTGAAGTCAAATAAATTTTAATCAAATTAGATCGCTTTTTTAG
ACTAATATTTCATAATAATAAATAATATA
Found at i:7233428 original size:19 final size:19
Alignment explanation
Indices: 7233404--7233442 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7233394 TATTATAATT
7233404 TTTTTTATTTACCAAAATA
1 TTTTTTATTTACCAAAATA
7233423 TTTTTTATTTACCAAAATA
1 TTTTTTATTTACCAAAATA
7233442 T
1 T
7233443 ATCAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTTTATTTACCAAAATA
Found at i:7233531 original size:27 final size:27
Alignment explanation
Indices: 7233492--7233546 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
7233482 TACTGGTCAC
**
7233492 GCCAATGGGATTGGCGGCACCAATGGT
1 GCCAATGCCATTGGCGGCACCAATGGT
7233519 GCCAATGCCATTGGCGGCACCAATGGT
1 GCCAATGCCATTGGCGGCACCAATGGT
7233546 G
1 G
7233547 TCATACTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.25, G:0.35, T:0.18
Consensus pattern (27 bp):
GCCAATGCCATTGGCGGCACCAATGGT
Found at i:7233558 original size:27 final size:27
Alignment explanation
Indices: 7233501--7233565 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
7233491 CGCCAATGGG
* *
7233501 ATTGGCGGCACCAATGGTGCCAATGCC
1 ATTGGCGGCACCAATGGTGCCAATACA
*
7233528 ATTGGCGGCACCAATGGTGTC-ATACTA
1 ATTGGCGGCACCAATGGTGCCAATAC-A
7233555 ATTGGCGGCAC
1 ATTGGCGGCAC
7233566 TACTCGTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 3 0.09
27 31 0.91
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAATACA
Found at i:7233678 original size:21 final size:20
Alignment explanation
Indices: 7233646--7233684 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7233636 AGTTGCTGCG
*
7233646 GAAAAGAAGAGAAAAAGAGA
1 GAAAAAAAGAGAAAAAGAGA
7233666 GAAAAAAAGGAGAAAAAGA
1 GAAAAAAA-GAGAAAAAGA
7233685 AGGTATGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (20 bp):
GAAAAAAAGAGAAAAAGAGA
Found at i:7233687 original size:12 final size:11
Alignment explanation
Indices: 7233647--7233686 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
7233637 GTTGCTGCGG
7233647 AAAAGAAGAGA
1 AAAAGAAGAGA
7233658 AAAAG-AGAGA
1 AAAAGAAGAGA
7233668 AAAA-AAGGAGA
1 AAAAGAA-GAGA
7233679 AAAAGAAG
1 AAAAGAAG
7233687 GTATGTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 10 0.38
11 14 0.54
12 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:7233800 original size:63 final size:64
Alignment explanation
Indices: 7233761--7233911 Score: 180
Period size: 63 Copynumber: 2.4 Consensus size: 64
7233751 TAATATTATT
* * * *
7233761 GTTAGCAAAAAACTAGTATTATTATTATGGTTACTTATT-ATTTTTATTTACGAAAATAAACTA
1 GTTAGCAAAAAACTAGTATTATTATTATGGTTACTTATTAAATGTAACTTACGAAAATAAACTA
* * * * *
7233824 GTTAGTAAAAAACTAGTATTATTATTATGGTTACTTATT-ATTTTTATTTACGAAAATAAACTA
1 GTTAGCAAAAAACTAGTATTATTATTATGGTTACTTATTAAATGTAACTTACGAAAATAAACTA
* * *
7233887 GTCAGTAAAAAACTAGTATTCTTAT
1 GTTAGCAAAAAACTAGTATTATTAT
7233912 AGTTAGTTAG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 85 1.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (64 bp):
GTTAGCAAAAAACTAGTATTATTATTATGGTTACTTATTAAATGTAACTTACGAAAATAAACTA
Found at i:7233990 original size:26 final size:26
Alignment explanation
Indices: 7233961--7234013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
7233951 TTTTAGTGTG
*
7233961 TATTATTTTGAGTACAAAATTATTAA
1 TATTATTTTGAGTACAAAATTAATAA
*
7233987 TATTATTTTGAGTATAAAATTAATAA
1 TATTATTTTGAGTACAAAATTAATAA
7234013 T
1 T
7234014 TTTAGTGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (26 bp):
TATTATTTTGAGTACAAAATTAATAA
Found at i:7234644 original size:18 final size:18
Alignment explanation
Indices: 7234601--7234645 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
7234591 TTGACATGGT
*
7234601 TGGTGGTGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
***
7234619 TACCGGCGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
7234637 TGGTGGCGA
1 TGGTGGCGA
7234646 TCATTGGGAT
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.09, G:0.47, T:0.13
Consensus pattern (18 bp):
TGGTGGCGAAGAAGAAGG
Found at i:7239239 original size:24 final size:24
Alignment explanation
Indices: 7239207--7239254 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
7239197 AGGTTTTTTT
7239207 TATATATTTTGATAAATAAAAAAA
1 TATATATTTTGATAAATAAAAAAA
*
7239231 TATATATTTTGGTAAATAAAAAAA
1 TATATATTTTGATAAATAAAAAAA
7239255 AACTTATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (24 bp):
TATATATTTTGATAAATAAAAAAA
Found at i:7239343 original size:74 final size:76
Alignment explanation
Indices: 7239235--7239379 Score: 190
Period size: 74 Copynumber: 1.9 Consensus size: 76
7239225 AAAAAATATA
* *
7239235 TATTTTGGTAAATAAAAAAAAACTTATAACATTTTGGT-TATTTTTAATTTTTT-TAATATATTT
1 TATTCTGGTAAATAAAAAAAAACTTATAACATTTTCGTAT-TTTTTAATTTTTTGTAATAT-TTT
7239298 -GTAAAAACCCAT
64 GGTAAAAACCCAT
** * *
7239310 TATTCTGGTAAAT-AAAAAAATTTTATAATATTTTCGTATTTTTTTATTTTTTGTAATATTTTGG
1 TATTCTGGTAAATAAAAAAAAACTTATAACATTTTCGTATTTTTTAATTTTTTGTAATATTTTGG
7239374 TAAAAA
66 TAAAAA
7239380 ACCCGAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
74 35 0.57
75 26 0.43
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.50
Consensus pattern (76 bp):
TATTCTGGTAAATAAAAAAAAACTTATAACATTTTCGTATTTTTTAATTTTTTGTAATATTTTGG
TAAAAACCCAT
Found at i:7240075 original size:4 final size:4
Alignment explanation
Indices: 7240066--7240206 Score: 282
Period size: 4 Copynumber: 35.2 Consensus size: 4
7240056 TCTCATTTCA
7240066 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
7240114 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
7240162 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
7240207 CCTCTCCTTC
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 137 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:7240291 original size:27 final size:27
Alignment explanation
Indices: 7240253--7240319 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
7240243 TAATATACAC
7240253 TGGTGCCGCCAATGGTATT-GGCACCAT
1 TGGTGCCGCCAATGGT-TTAGGCACCAT
*
7240280 TGGTGCCGCCAATGGTTTAGGCACCTT
1 TGGTGCCGCCAATGGTTTAGGCACCAT
7240307 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
7240320 CCCATTGGCG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.16, C:0.27, G:0.30, T:0.27
Consensus pattern (27 bp):
TGGTGCCGCCAATGGTTTAGGCACCAT
Found at i:7240416 original size:22 final size:22
Alignment explanation
Indices: 7240391--7240435 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7240381 GTTTTTTTTG
7240391 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
*
7240413 ATATTTTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
7240435 A
1 A
7240436 GTTATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (22 bp):
ATATATTTTGGTAAATAAAAAA
Found at i:7241957 original size:5 final size:5
Alignment explanation
Indices: 7241947--7242000 Score: 108
Period size: 5 Copynumber: 10.8 Consensus size: 5
7241937 TGTAAACTCA
7241947 AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT
1 AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT
7241997 AGTA
1 AGTA
7242001 ACATTATTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (5 bp):
AGTAT
Found at i:7250379 original size:15 final size:17
Alignment explanation
Indices: 7250355--7250398 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
7250345 TTTTGACTTA
7250355 TTTTAGTTTT-TTTG-GT
1 TTTTA-TTTTATTTGTGT
7250371 TTTTATTTTATTTGTGT
1 TTTTATTTTATTTGTGT
7250388 TTATTATTTTA
1 TT-TTATTTTA
7250399 AAGTTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.16
16 9 0.36
17 4 0.16
18 8 0.32
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (17 bp):
TTTTATTTTATTTGTGT
Found at i:7252198 original size:14 final size:14
Alignment explanation
Indices: 7252179--7252208 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7252169 ATTTACAAAG
7252179 TTAACATGGAAATA
1 TTAACATGGAAATA
7252193 TTAACATGGAAATA
1 TTAACATGGAAATA
7252207 TT
1 TT
7252209 CTAAAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (14 bp):
TTAACATGGAAATA
Found at i:7252843 original size:25 final size:25
Alignment explanation
Indices: 7252793--7252866 Score: 80
Period size: 25 Copynumber: 2.9 Consensus size: 25
7252783 AAAATGCTTG
7252793 TACGAGCACATA-AACGGGAAGCCTCA
1 TACGAGC-CATATAACGGGAAG-CTCA
7252819 CT-CGAGCCATATAACGGGAAGCTCA
1 -TACGAGCCATATAACGGGAAGCTCA
* * *
7252844 TATGAGCCATGTAACGGAAAGCT
1 TACGAGCCATATAACGGGAAGCT
7252867 TATCAAGGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.02
25 26 0.62
26 14 0.33
27 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (25 bp):
TACGAGCCATATAACGGGAAGCTCA
Found at i:7252938 original size:24 final size:23
Alignment explanation
Indices: 7252911--7252989 Score: 72
Period size: 25 Copynumber: 3.3 Consensus size: 23
7252901 CATAATCAAA
*
7252911 AAGCTCATAGGAGCCAATAACGGG
1 AAGCTCA-AGGAGCCAATATCGGG
*
7252935 AAGCTTC-AGATAGCCATATATCGGG
1 AAGC-TCAAG-GAGCCA-ATATCGGG
*
7252960 AAGTTCAAGCGAGCC-ATATCGGG
1 AAGCTCAAG-GAGCCAATATCGGG
7252983 AAGCTCA
1 AAGCTCA
7252990 CAAAGAGCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
23 16 0.36
24 11 0.24
25 18 0.40
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.18
Consensus pattern (23 bp):
AAGCTCAAGGAGCCAATATCGGG
Found at i:7252974 original size:25 final size:24
Alignment explanation
Indices: 7252921--7252987 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
7252911 AAGCTCATAG
*
7252921 GAGCCAATAACGGGAAGCTTCAGA
1 GAGCCAATATCGGGAAGCTTCAGA
* *
7252945 TAGCCATATATCGGGAAG-TTCAAGC
1 GAGCCA-ATATCGGGAAGCTTC-AGA
7252970 GAGCC-ATATCGGGAAGCT
1 GAGCCAATATCGGGAAGCT
7252988 CACAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 11 0.31
24 9 0.25
25 16 0.44
ACGTcount: A:0.33, C:0.21, G:0.28, T:0.18
Consensus pattern (24 bp):
GAGCCAATATCGGGAAGCTTCAGA
Found at i:7253059 original size:38 final size:38
Alignment explanation
Indices: 7253008--7253080 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
7252998 CTTTAATCGG
7253008 GATTAAATGTTTCTTTGGAGATGCCAGCAGGGCAATCT
1 GATTAAATGTTTCTTTGGAGATGCCAGCAGGGCAATCT
* *
7253046 GATTAAGTGTTTCTTTGGAGATGCCAGCCGGGCAA
1 GATTAAATGTTTCTTTGGAGATGCCAGCAGGGCAA
7253081 GAAGGCGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (38 bp):
GATTAAATGTTTCTTTGGAGATGCCAGCAGGGCAATCT
Found at i:7253624 original size:50 final size:50
Alignment explanation
Indices: 7253542--7253639 Score: 133
Period size: 50 Copynumber: 2.0 Consensus size: 50
7253532 GCAGATAAAA
* * * *
7253542 AACAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTAC
1 AACAGCGAATCTTACTTCCCTGACAGTATAGTGGAACAGATTAAAGCTAC
* * *
7253592 AACAGCGAATCTTATTTCCCTGACATTATAGTGGAATAGATTAAAGCT
1 AACAGCGAATCTTACTTCCCTGACAGTATAGTGGAACAGATTAAAGCT
7253640 GAAGTGAAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (50 bp):
AACAGCGAATCTTACTTCCCTGACAGTATAGTGGAACAGATTAAAGCTAC
Found at i:7253756 original size:50 final size:50
Alignment explanation
Indices: 7253702--7254048 Score: 325
Period size: 50 Copynumber: 6.9 Consensus size: 50
7253692 AGTGGAACAT
* * *
7253702 ATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAAAAG
* ** * * * * ** *
7253752 ATTGAAGCTACAACAGCGAATCTTACTTCCGTGGCAGTGTAATGGAACAG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAAAAG
* *
7253802 ATTGAAGCCACAACGGCAAATCTTACTTCCCCGACATTGCAGTTAAAAAG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAAAAG
* * * ** * ** *
7253852 ATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCCGTGCAATGGAACAG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAAAAG
* * * *
7253902 ATTGAAGCCACAATGGCGAATCTTGCTTCCTCGACATTGCAGTTAAAAAG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAAAAG
** * * ** * ** *
7253952 ATTGAAGCTACAACAACGAATCTTACTTCCCTGGCGGTGTAGTGGAACAG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAAAAG
* * *
7254002 ATTGAAGCTATAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
1 ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAA
7254049 TAGAATTAAA
Statistics
Matches: 222, Mismatches: 75, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
50 222 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
ATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAGTTAAAAAG
Found at i:7253760 original size:121 final size:121
Alignment explanation
Indices: 7253542--7253760 Score: 294
Period size: 121 Copynumber: 1.8 Consensus size: 121
7253532 GCAGATAAAA
* * *
7253542 AACAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTAT
1 AACAGCGAATCTTACTTCACTGGCGGTGTAGTGGAACAGATTGAAGCCACAACAGCGAATCTTAC
* * * *
7253607 TTCCCTGACATTATAGTGGAATAGATTAAAGCTGAAGTGAAGTAGATTGAAGTTAC
66 TTCCCCGACATTACAGTGAAAAAGATTAAAGCTGAAGTGAAGTAGATTGAAGTTAC
* * * * * *
7253663 AACAGCGAATCTTACTTCATTGGTGGTGTAGTGGAACATATTGAAGCCACAACGGTGAATCTTGC
1 AACAGCGAATCTTACTTCACTGGCGGTGTAGTGGAACAGATTGAAGCCACAACAGCGAATCTTAC
* * *
7253728 TTCCCCGACATTGCAGTTAAAAAGATTGAAGCT
66 TTCCCCGACATTACAGTGAAAAAGATTAAAGCT
7253761 ACAACAGCGA
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
121 82 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (121 bp):
AACAGCGAATCTTACTTCACTGGCGGTGTAGTGGAACAGATTGAAGCCACAACAGCGAATCTTAC
TTCCCCGACATTACAGTGAAAAAGATTAAAGCTGAAGTGAAGTAGATTGAAGTTAC
Found at i:7253824 original size:100 final size:100
Alignment explanation
Indices: 7253650--7254048 Score: 618
Period size: 100 Copynumber: 4.0 Consensus size: 100
7253640 GAAGTGAAGT
* ** * * *
7253650 AGATTGAAGTTACAACAGCGAATCTTACTTCATTGGTGGTGTAGTGGAACATATTGAAGCCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAATGGAACAGATTGAAGCCACAA
*
7253715 CGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
7253750 AGATTGAAGCTACAACAGCGAATCTTACTTCCGTGGCAGTGTAATGGAACAGATTGAAGCCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAATGGAACAGATTGAAGCCACAA
* *
7253815 CGGCAAATCTTACTTCCCCGACATTGCAGTTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
7253850 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCCGTGCAATGGAACAGATTGAAGCCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAATGGAACAGATTGAAGCCACAA
* *
7253915 TGGCGAATCTTGCTTCCTCGACATTGCAGTTAAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * *
7253950 AGATTGAAGCTACAACAACGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTATAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAATGGAACAGATTGAAGCCACAA
*
7254015 CGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAGTTAAA
7254049 TAGAATTAAA
Statistics
Matches: 273, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 273 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (100 bp):
AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAATGGAACAGATTGAAGCCACAA
CGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:7254234 original size:88 final size:86
Alignment explanation
Indices: 7254072--7254458 Score: 346
Period size: 88 Copynumber: 4.3 Consensus size: 86
7254062 ATCATAGTCA
* * *
7254072 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAA-ACCAATCTTATCTCCCTGAA
1 ACAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAATATCAATCTTATCTCCCTGAA
* *
7254136 GTTTCAGTGGAGCAGATTGAAGTT
63 GTTGCAGTGGAGCAGATTGAAGAT
* * * *
7254160 ACTAATCCTACCCCCCTGAAGTTGCAGTGGAGCAGATTAAAATGATGAATCTTATCTCCCTGAAG
1 AC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAT-ATCAATCTTATCTCCCTGAAG
* *
7254225 TTGCAGTGGAGCAGACTAAAGAT
64 TTGCAGTGGAGCAGATTGAAGAT
* *
7254248 AGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAACTACCAATCTTATCT
1 A-C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA---AT--A-T--CAATCTTATCT
* * *
7254313 CTCTGAAGTTGCAGTGGGGCAGGTTGAAGAT
56 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT
* * ** *
7254344 ACACGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCTA-CAACTCATATCTCCCTGAA
1 ACA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAATATCAA-TCTTATCTCCCTGAA
** ** *
7254408 GTTGCAGCAGAGGGGATTGAAGCT
63 GTTGCAGTGGAGCAGATTGAAGAT
*
7254432 ACAACTCATATCTCCCTGAAGTTGCAG
1 ACAA-TCTTATCTCCCTGAAGTTGCAG
7254459 CAGAGTGGAT
Statistics
Matches: 243, Mismatches: 41, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
86 2 0.01
87 5 0.02
88 123 0.51
89 36 0.15
91 1 0.00
92 2 0.01
93 2 0.01
94 2 0.01
95 30 0.12
96 40 0.16
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (86 bp):
ACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATATCAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTGAAGAT
Found at i:7254328 original size:51 final size:45
Alignment explanation
Indices: 7254071--7254414 Score: 268
Period size: 44 Copynumber: 7.6 Consensus size: 45
7254061 TATCATAGTC
* * *
7254071 AACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAG-T
1 AACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
* * * * *
7254114 AAACCAATCTTATCTCCCTGAAGTTTCAGTGGAGCAGATTGAAG-T
1 -AACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
* * * * * * *
7254159 TACTAATCCTACCCCCCTGAAGTTGCAGTGGAGCAGATTAAA-AT
1 AACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
* ** *
7254203 GATGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAT
1 AACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
* * *
7254248 AGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
1 AACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAG--AT
* ** ** *
7254295 AAACTACCAATCTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTGAAGAT
1 -AAC-A--AATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
** * * *
7254344 -ACACGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCT
1 AACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
* *
7254388 -ACAACTCATATCTCCCTGAAGTTGCAG
1 AACAAATCTTATCTCCCTGAAGTTGCAG
7254415 CAGAGGGGAT
Statistics
Matches: 248, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
44 164 0.66
45 41 0.17
46 1 0.00
47 4 0.02
48 2 0.01
49 3 0.01
51 33 0.13
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (45 bp):
AACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGAT
Found at i:7254429 original size:44 final size:44
Alignment explanation
Indices: 7254308--7254479 Score: 204
Period size: 44 Copynumber: 3.9 Consensus size: 44
7254298 CTACCAATCT
* ** * * *
7254308 TATCTCTCTGAAGTTGCAGTGGGGCAGG-TTGAAGATAC-ACGTCT
1 TATCTCCCTGAAGTTGCAGCAGAGC-GGATTGAAGCTACAAC-TCA
** * *
7254352 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCTACAACTCA
1 TATCTCCCTGAAGTTGCAGCAGAGCGGATTGAAGCTACAACTCA
*
7254396 TATCTCCCTGAAGTTGCAGCAGAGGGGATTGAAGCTACAACTCA
1 TATCTCCCTGAAGTTGCAGCAGAGCGGATTGAAGCTACAACTCA
*
7254440 TATCTCCCTGAAGTTGCAGCAGAGTGGATTGAAGCTACAA
1 TATCTCCCTGAAGTTGCAGCAGAGCGGATTGAAGCTACAA
7254480 ATCGTATCAC
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 1 0.01
44 111 0.97
45 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGCAGAGCGGATTGAAGCTACAACTCA
Found at i:7255974 original size:22 final size:21
Alignment explanation
Indices: 7255938--7255978 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7255928 TCATTTTAAT
7255938 ATTATTATTACTATTATATTAC
1 ATTATTATTACTATT-TATTAC
**
7255960 ATTATTATTGTTATTTATT
1 ATTATTATTACTATTTATT
7255979 CATCTATGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTATTATTACTATTTATTAC
Found at i:7256548 original size:73 final size:73
Alignment explanation
Indices: 7256432--7256573 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 73
7256422 TTTCAAACTT
* * * **
7256432 AAGTTTTAAACGATCTTAGGAATTACGAAAAGATCGTGTCCTAACTTACTGGGCATGGTCCCTTT
1 AAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCGTGCCCTAACTTACTGGGCATGACCCCTTT
7256497 TTTTTCTC
66 TTTTTCTC
* *
7256505 AAGTTTTAAACGATCTCGGGAATTAAGAAAAGATTGTGCCCTAACTTACTGGGCATGACCCCTTT
1 AAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCGTGCCCTAACTTACTGGGCATGACCCCTTT
7256570 TTTT
66 TTTT
7256574 AAAATCTGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (73 bp):
AAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCGTGCCCTAACTTACTGGGCATGACCCCTTT
TTTTTCTC
Found at i:7265420 original size:26 final size:26
Alignment explanation
Indices: 7265352--7265402 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
7265342 TTCTTGAAAT
* *
7265352 TTTATTAGGGGAAAAATCATCAAAAG
1 TTTACTAGGGGTAAAATCATCAAAAG
7265378 TTTACTAGGGGTAAAATCATCAAAA
1 TTTACTAGGGGTAAAATCATCAAAA
7265403 TTTTGTTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (26 bp):
TTTACTAGGGGTAAAATCATCAAAAG
Found at i:7268311 original size:31 final size:31
Alignment explanation
Indices: 7268273--7268336 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
7268263 ATCTGGAGTC
7268273 AACTAAGGTGTGAAGTGAGAGTTGATACGTT
1 AACTAAGGTGTGAAGTGAGAGTTGATACGTT
7268304 AACTAAGGTGTGAAGTGAGAGTTGATACGTT
1 AACTAAGGTGTGAAGTGAGAGTTGATACGTT
7268335 AA
1 AA
7268337 GTATGGTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.28
Consensus pattern (31 bp):
AACTAAGGTGTGAAGTGAGAGTTGATACGTT
Found at i:7269432 original size:38 final size:39
Alignment explanation
Indices: 7269390--7269476 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 39
7269380 ATACAGAACA
* *
7269390 CATCCTGGCGCACAAAGTGCATAT-TAGCACACTATGTG
1 CATCCTGGCACACAAAGTGCATATCTAGCACACTAAGTG
* *** *
7269428 CATCCTAGCACATGGAGTGCATATCTGGCACACTAAGTG
1 CATCCTGGCACACAAAGTGCATATCTAGCACACTAAGTG
*
7269467 AATCCTGGCA
1 CATCCTGGCA
7269477 TGTAAAGTGC
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
38 19 0.49
39 20 0.51
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (39 bp):
CATCCTGGCACACAAAGTGCATATCTAGCACACTAAGTG
Found at i:7269486 original size:39 final size:38
Alignment explanation
Indices: 7269403--7269488 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 38
7269393 CCTGGCGCAC
* *
7269403 AAAGTGCATATTAGCACACTATGTGCATCCTAGCACAT
1 AAAGTGCATATTAGCACACTAAGTGAATCCTAGCACAT
** * * **
7269441 GGAGTGCATATCTGGCACACTAAGTGAATCCTGGCATGT
1 AAAGTGCATAT-TAGCACACTAAGTGAATCCTAGCACAT
7269480 AAAGTGCAT
1 AAAGTGCAT
7269489 CATGGCGCAT
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
38 9 0.24
39 28 0.76
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (38 bp):
AAAGTGCATATTAGCACACTAAGTGAATCCTAGCACAT
Found at i:7275245 original size:34 final size:34
Alignment explanation
Indices: 7275201--7275268 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
7275191 GCATAGTTAA
* *
7275201 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
*
7275236 ACAGT-TTGGGCCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
7275269 TCAAAAATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:7280758 original size:26 final size:26
Alignment explanation
Indices: 7280705--7280766 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
7280695 TACCTATAGT
*
7280705 AGTTTCAGTATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
** * *
7280731 AGTTTCAGAATATCATAGTATGTTTC
1 AGTTTCAGAATATCATAACATATATC
7280757 AGTTTCAGAA
1 AGTTTCAGAA
7280767 CACTTACAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:7286541 original size:19 final size:19
Alignment explanation
Indices: 7286517--7286558 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7286507 AAATTAGAAC
* **
7286517 AAAAATTGTAAAATTTTAT
1 AAAAATCGTAAAAAATTAT
7286536 AAAAATCGTAAAAAATTAT
1 AAAAATCGTAAAAAATTAT
7286555 AAAA
1 AAAA
7286559 TATATAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAAATCGTAAAAAATTAT
Found at i:7286552 original size:29 final size:30
Alignment explanation
Indices: 7286517--7286616 Score: 118
Period size: 29 Copynumber: 3.4 Consensus size: 30
7286507 AAATTAGAAC
*
7286517 AAAAATTGTAAAATTTTATAAAAATCGT-A
1 AAAAATTATAAAATTTTATAAAAATCGTAA
* * *
7286546 AAAAATTATAAAA-TATATAGAAAT-ATAA
1 AAAAATTATAAAATTTTATAAAAATCGTAA
*
7286574 AAAAATTTATAAAATTTTAT-AAAGTCGTAA
1 AAAAA-TTATAAAATTTTATAAAAATCGTAA
7286604 AAAAATTATAAAA
1 AAAAATTATAAAA
7286617 ATTATTGTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
27 1 0.02
28 15 0.25
29 31 0.53
30 12 0.20
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (30 bp):
AAAAATTATAAAATTTTATAAAAATCGTAA
Found at i:7286956 original size:19 final size:18
Alignment explanation
Indices: 7286918--7286971 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
7286908 NTTTTAATTT
*
7286918 TTTAT-ATTTTTATTATAA
1 TTTATAATTTTTA-TAAAA
7286936 TTTAATAATTTTTATAAAA
1 TTT-ATAATTTTTATAAAA
*
7286955 TTTATTATTTATTATAA
1 TTTATAATTT-TTATAA
7286972 CTTTTTTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 9 0.29
19 15 0.48
20 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATAATTTTTATAAAA
Found at i:7287149 original size:89 final size:88
Alignment explanation
Indices: 7286998--7287216 Score: 291
Period size: 89 Copynumber: 2.5 Consensus size: 88
7286988 TAATAAGATC
* * *
7286998 AGGGGCTTAATTGCTTTTCTTGAAAAAGTTTGAGGG-TCTTTTTGATGCATTTTGAAAGTTCAAG
1 AGGGGCTTAATTGATTTT-TTTAAAAAGTTTGAGGGCTTTTTTTGATGCATTTTGAAAGTTCAAG
7287062 TACTCAATTGAGTGAAAACAAAA-G
65 TACTCAATTGAGTGAAAA-AAAATG
* * *
7287086 TAGGGGCTTAATTGATTTTTTTAAGAAGTTTGAGGGCTTTTTTTTATGTATTTTGAAAGTTCAAG
1 -AGGGGCTTAATTGATTTTTTTAAAAAGTTTGAGGGCTTTTTTTGATGCATTTTGAAAGTTCAAG
* *
7287151 TGCTCAATTGAGTGCAAAAAAATG
65 TACTCAATTGAGTGAAAAAAAATG
*
7287175 AGGGGCTTAATT-ACTTTTTTTGAAAAAGTTTGAAGGCTTTTT
1 AGGGGCTTAATTGA-TTTTTTT-AAAAAGTTTGAGGGCTTTTT
7287217 ACACCCTTAA
Statistics
Matches: 116, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
87 1 0.01
88 38 0.33
89 77 0.66
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (88 bp):
AGGGGCTTAATTGATTTTTTTAAAAAGTTTGAGGGCTTTTTTTGATGCATTTTGAAAGTTCAAGT
ACTCAATTGAGTGAAAAAAAATG
Found at i:7293090 original size:4 final size:4
Alignment explanation
Indices: 7293083--7293108 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7293073 AAAAAAAAAC
7293083 TTCT TTCT TTCT TTCT TTCT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TT
7293109 GCTTCACTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:7299697 original size:38 final size:37
Alignment explanation
Indices: 7299615--7299698 Score: 86
Period size: 38 Copynumber: 2.2 Consensus size: 37
7299605 TAATTTCTAT
7299615 TTCTTATTTATTTTTTATTCTCAAATTTCTTCTTTTAC
1 TTCTT-TTTATTTTTTATTCTCAAATTTCTTCTTTTAC
*
7299653 TAT-TTTTGATTTCTTTATTACT-AAATTTCTT-TATTT-C
1 T-TCTTTTTATTT-TTTATT-CTCAAATTTCTTCT-TTTAC
7299690 TTCTTTTTA
1 TTCTTTTTA
7299699 GATCGGATCC
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
36 1 0.03
37 14 0.36
38 21 0.54
39 3 0.08
ACGTcount: A:0.19, C:0.13, G:0.01, T:0.67
Consensus pattern (37 bp):
TTCTTTTTATTTTTTATTCTCAAATTTCTTCTTTTAC
Found at i:7305409 original size:18 final size:19
Alignment explanation
Indices: 7305371--7305416 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7305361 AATTCAAACT
7305371 TTGGTTAACATTAAATTAA
1 TTGGTTAACATTAAATTAA
* *
7305390 TTGGTTAA-ATTGATTTAA
1 TTGGTTAACATTAAATTAA
7305408 TTCGGTTAA
1 TT-GGTTAA
7305417 TTTGTCAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (19 bp):
TTGGTTAACATTAAATTAA
Found at i:7306045 original size:158 final size:159
Alignment explanation
Indices: 7305782--7306098 Score: 627
Period size: 158 Copynumber: 2.0 Consensus size: 159
7305772 ACAGTTAAAA
7305782 AATTATACAATTCAATTAATTCAGTTAATTCTAGCTCGGTTCGATTAATAACTGAACCGACCATC
1 AATTATACAATTCAATTAATTCAGTTAATTCTAGCTCGGTTCGATTAATAACTGAACCGACCATC
7305847 TAGATACCCTACTAATTGAATTGAAAAATATTGAAGTTCAAATTCTTTTACTCGTAATAAATAAT
66 TAGATACCCTACTAATTGAATTGAAAAATATTGAAGTTCAAATTCTTTTACTCGTAATAAATAAT
7305912 AATTTTTTATTGAAATT-ATATTTCACAT
131 AATTTTTTATTGAAATTAATATTTCACAT
7305940 AATTATACAATTCAATTAATTCAGTTAATTCTAGCTCGGTTCGATTAATAACTGAACCGACCATC
1 AATTATACAATTCAATTAATTCAGTTAATTCTAGCTCGGTTCGATTAATAACTGAACCGACCATC
7306005 TAGATACCCTACTAATTGAATTGAAAAATATTGAAGTTCAAATTCTTTTACTCGTAATAAATAAT
66 TAGATACCCTACTAATTGAATTGAAAAATATTGAAGTTCAAATTCTTTTACTCGTAATAAATAAT
7306070 AATTTTTTATTGAAATTAATATTTCACAT
131 AATTTTTTATTGAAATTAATATTTCACAT
7306099 TTCAAATTTT
Statistics
Matches: 158, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
158 147 0.93
159 11 0.07
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (159 bp):
AATTATACAATTCAATTAATTCAGTTAATTCTAGCTCGGTTCGATTAATAACTGAACCGACCATC
TAGATACCCTACTAATTGAATTGAAAAATATTGAAGTTCAAATTCTTTTACTCGTAATAAATAAT
AATTTTTTATTGAAATTAATATTTCACAT
Found at i:7309203 original size:44 final size:43
Alignment explanation
Indices: 7309150--7309537 Score: 237
Period size: 44 Copynumber: 8.8 Consensus size: 43
7309140 TTATCATTTT
*
7309150 AATCCGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTAGCTTC
* ** * * *
7309194 AATCTGCTCCATTTTAACTTCAGGGAGATAAAGTTTGTTATCTCC
1 AATCTGCTCCACTGCAACTTCAGGGAGAT-AAGATTG-TAGCTTC
* * *
7309239 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTCATGGTGT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGT-A-GCT-TC
* * * * * * *
7309285 GATCCGCTCTACTGCAAAATT-AGAGAGATAAGATCTGTCA-TTTT
1 AATCTGCTCCACTGC-AACTTCAGGGAGATAAGAT-TGT-AGCTTC
* * * * **
7309329 AATCCGCTTCACTGCAACTTCAGGAAGATAGGATTGATTTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG-TAGCTTC
** * *
7309373 AATCTATTCCACTGCAACTTCAGGGAGATAAGATTG--GATGC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAGCTTC
* * * * * *
7309414 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTAGCTTC
** * * * * ** *
7309458 AATCCACTTCACTGCAACATAAGGGAGATAGGACTACTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAGCTTC
*
7309502 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG
7309538 GATGCGAACT
Statistics
Matches: 256, Mismatches: 72, Indels: 33
0.71 0.20 0.09
Matches are distributed among these distances:
41 31 0.12
42 2 0.01
43 8 0.03
44 143 0.56
45 40 0.16
46 28 0.11
47 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAGCTTC
Found at i:7309264 original size:45 final size:45
Alignment explanation
Indices: 7309150--7309269 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 45
7309140 TTATCATTTT
* *
7309150 AATCCGCTCCACTGCAACTTCAGGGAGAT-AAGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAAGATTAGTAGCTCC
* ** * *
7309194 AATCTGCTCCATTTTAACTTCAGGGAGATAAAG-TTTGTTATCTCC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAAGATTAG-TAGCTCC
* *
7309239 AGTCTGCTCCACTGCAACTTTAGGGAGATAA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA
7309270 GACTTGTCAT
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
44 28 0.45
45 34 0.55
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAAGATTAGTAGCTCC
Found at i:7309442 original size:41 final size:42
Alignment explanation
Indices: 7309372--7309576 Score: 132
Period size: 41 Copynumber: 4.8 Consensus size: 42
7309362 TTGATTTCTT
* *
7309372 CAATCTATTCCACTGCAACTTCAGGGAGATAAGAT-TGGATG
1 CAATCTACTCTACTGCAACTTCAGGGAGATAAGATATGGATG
* * * * * *
7309413 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTT
1 CAATCTACTCTACTGCAACTTCAGGGAGATAAGA--TATGGATG
* * * * * * *
7309457 TAATCCACT-TCACTGCAACATAAGGGAGATAGGACTACT-AACTT
1 CAATCTACTCT-ACTGCAACTTCAGGGAGATAAGA-TA-TGGA-TG
*
7309501 CAATCTACTCCACTGCAACTTCAGGGAGATAAGAT-TGGATG
1 CAATCTACTCTACTGCAACTTCAGGGAGATAAGATATGGATG
* * * *
7309542 CGAA-CTGCTCTACGGCAACTTTAGAGAGATAAGAT
1 C-AATCTACTCTACTGCAACTTCAGGGAGATAAGAT
7309577 CTGTCATCTT
Statistics
Matches: 124, Mismatches: 31, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
41 58 0.47
42 3 0.02
43 5 0.04
44 58 0.47
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
CAATCTACTCTACTGCAACTTCAGGGAGATAAGATATGGATG
Found at i:7309447 original size:129 final size:128
Alignment explanation
Indices: 7309245--7309583 Score: 437
Period size: 129 Copynumber: 2.6 Consensus size: 128
7309235 CTCCAGTCTG
* * * * *
7309245 CTCCACTGCAACTTTAGGGAGATAAGACTTGTCATGGTGTGATCCGCTCTACTGCAAAATTAGAG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTG----GATGCGATCTGCTCTACTGC-AACTTAGAG
* * * * **
7309310 AGATAAGATCTGTCATTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTGA-TTTCTTCA
60 AGATAAGATCTGTCATTTTAATCCACTTCACTGCAACATAAGGAAGATAGGACT-ACTAACTTCA
7309374 ATCTA
124 ATCTA
*
7309379 TTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTT-AGAGAGATA
** *
7309444 AGATCTGTGGTTTTAATCCACTTCACTGCAACATAAGGGAGATAGGACTACTAACTTCAATCTA
65 AGATCTGTCATTTTAATCCACTTCACTGCAACATAAGGAAGATAGGACTACTAACTTCAATCTA
* *
7309508 CTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGAACTGCTCTACGGCAACTTTAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAAC-TTAGAGAGATA
7309573 AGATCTGTCAT
65 AGATCTGTCAT
7309584 CTTCGATCTA
Statistics
Matches: 182, Mismatches: 20, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
128 5 0.03
129 147 0.81
130 2 0.01
133 3 0.02
134 25 0.14
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (128 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTAGAGAGATAA
GATCTGTCATTTTAATCCACTTCACTGCAACATAAGGAAGATAGGACTACTAACTTCAATCTA
Found at i:7309811 original size:45 final size:45
Alignment explanation
Indices: 7309757--7309887 Score: 131
Period size: 44 Copynumber: 2.9 Consensus size: 45
7309747 ATCTGCTTCA
* * *
7309757 CTGTTAGTACATGAAGGTAAGATCTGCTATCTTCAGTCTGCTCTG
1 CTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCTG
* * * * *
7309802 CTGTCAGTACAGGAAGGCAAG-GCTGGTGTCTTC-GATCTACTTTG
1 CTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG-TCTGCTCTG
* * * *
7309846 ATGCCAGTATAGGAAGACAAGATCTGCTATCTTCAGTCTGCT
1 CTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
7309888 TTACTGAAAA
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
43 1 0.01
44 33 0.49
45 32 0.48
46 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (45 bp):
CTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCTG
Found at i:7309953 original size:45 final size:45
Alignment explanation
Indices: 7309904--7310086 Score: 222
Period size: 45 Copynumber: 4.1 Consensus size: 45
7309894 AAAACTATGG
* * * * * **
7309904 TATCTTCGATCTGCTTCATTGTCAGTATAGGAAGGTAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * *
7309949 TATCTTCGATCTACTTCGCTGCCAATACAGGAAGATAAGATCTAC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* ** * *
7309994 TATTTTTTATCTACTTCGCTACCAATACAGGAAGACAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
*
7310039 TATCTTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
7310084 TAT
1 TAT
7310087 TTTCAGTCTG
Statistics
Matches: 120, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 120 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
Found at i:7309980 original size:165 final size:165
Alignment explanation
Indices: 7309682--7309982 Score: 437
Period size: 165 Copynumber: 1.8 Consensus size: 165
7309672 TCTGCTTCGC
* * * *
7309682 TGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTTTGCTTTGCTACAAACTATGGTGTCTTCA
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACTACAAACTATGGTATCTTCA
* * * * *
7309747 ATCTGCTTCACTGTTAGTACATGAAGGTAAGATCTGCTATCTTCAGTCTGCTCTGCTGTCAGTAC
66 ATCTGCTTCACTGTCAGTACAGGAAGGTAAGATCTGCTATCTTCAGTCTACTCTGCTGCCAATAC
7309812 AGGAAGGCAAGGCTGGTGTCTTCGATCTACTTTGA
131 AGGAAGGCAAGGCTGGTGTCTTCGATCTACTTTGA
*
7309847 TGCCAGTATAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACTGA-AAACTATGGTATCTTC
1 TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACT-ACAAACTATGGTATCTTC
* * *
7309911 GATCTGCTTCATTGTCAGTATAGGAAGGTAAGATCTGCTATCTTC-GATCTACT-TCGCTGCCAA
65 AATCTGCTTCACTGTCAGTACAGGAAGGTAAGATCTGCTATCTTCAG-TCTACTCT-GCTGCCAA
7309974 TACAGGAAG
128 TACAGGAAG
7309983 ATAAGATCTA
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
164 2 0.02
165 117 0.98
166 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (165 bp):
TGCCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACTACAAACTATGGTATCTTCA
ATCTGCTTCACTGTCAGTACAGGAAGGTAAGATCTGCTATCTTCAGTCTACTCTGCTGCCAATAC
AGGAAGGCAAGGCTGGTGTCTTCGATCTACTTTGA
Found at i:7310094 original size:211 final size:211
Alignment explanation
Indices: 7309830--7310309 Score: 710
Period size: 211 Copynumber: 2.3 Consensus size: 211
7309820 AAGGCTGGTG
* * *
7309830 TCTTCGATCTACTTTGA-TGCCAGTATAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACTG
1 TCTTCGATCTAC-TTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACTG
* * * * * *
7309894 AAAACTATGGTATCTTCGATCTGCTTCATTGTCAGTATAGGAAGGTAAGATCTGCTATCTTCGAT
65 AAAACTATAGTATCTTCGATCTGCTTCACTGTCAGTATAGAAAAGCAAGATCTGCTATATTCGAT
* * **
7309959 CTACTTCGCTGCCAATACAGGAAGATAAGATCTACTATTTTTTATCTACTTCGCTACCAATACAG
130 CTACTTCGCTGCCAATACAGGAAGAAAAGATCTACTATCTTCGATCTACTTCGCTACCAATACAG
*
7310024 GAAGACAAGATCTGCTA
195 AAAGACAAGATCTGCTA
* * * *
7310041 TCTTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAGTCTGCTTTATTGC
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACTGA
7310106 AAACTATAGTATCTTCGATCTGCTTCACTGTCAGTATAGAAAAGCAAGATCTGCTATATTCGATC
66 AAACTATAGTATCTTCGATCTGCTTCACTGTCAGTATAGAAAAGCAAGATCTGCTATATTCGATC
* * * *
7310171 TACTTCGCTGCCAATACAGGAAGAAAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGA
131 TACTTCGCTGCCAATACAGGAAGAAAAGATCTACTATCTTCGATCTACTTCGCTACCAATACAGA
*
7310236 AAGACGAGATCTGCTA
196 AAGACAAGATCTGCTA
* * *
7310252 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTCAGTTTGCT
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCT
7310310 CCGCTGTCAA
Statistics
Matches: 240, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
210 3 0.01
211 237 0.99
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (211 bp):
TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTACTGA
AAACTATAGTATCTTCGATCTGCTTCACTGTCAGTATAGAAAAGCAAGATCTGCTATATTCGATC
TACTTCGCTGCCAATACAGGAAGAAAAGATCTACTATCTTCGATCTACTTCGCTACCAATACAGA
AAGACAAGATCTGCTA
Found at i:7310121 original size:166 final size:166
Alignment explanation
Indices: 7309949--7310252 Score: 421
Period size: 166 Copynumber: 1.8 Consensus size: 166
7309939 TAAGATCTGC
* * * * **
7309949 TATCTTCGATCTACTTCGCTGCCAATACAG-GAAGATAAGATCTACTATTTTTTATCTACTTCGC
1 TATCTTCGATCTACTTCACTGCCAATACAGAAAAG-CAAGATCTACTATATTCGATCTACTTCGC
* * *
7310013 TACCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCACTGCCAATACAGGAAGACAAG
65 TACCAATACAGGAAGAAAAGATCTGCTATCTTCGATCTACTTCACTGCCAATACAGAAAGACAAG
7310078 ATCTGCTATTTTCAGTCTGCTTTATTGCAAACTATAG
130 ATCTGCTATTTTCAGTCTGCTTTATTGCAAACTATAG
* * * * *
7310115 TATCTTCGATCTGCTTCACTGTCAGTATAGAAAAGCAAGATCTGCTATATTCGATCTACTTCGCT
1 TATCTTCGATCTACTTCACTGCCAATACAGAAAAGCAAGATCTACTATATTCGATCTACTTCGCT
* ** * *
7310180 GCCAATACAGGAAGAAAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGAAAGACGAGA
66 ACCAATACAGGAAGAAAAGATCTGCTATCTTCGATCTACTTCACTGCCAATACAGAAAGACAAGA
7310245 TCTGCTAT
131 TCTGCTAT
7310253 CTTCGATCTA
Statistics
Matches: 118, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
166 115 0.97
167 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (166 bp):
TATCTTCGATCTACTTCACTGCCAATACAGAAAAGCAAGATCTACTATATTCGATCTACTTCGCT
ACCAATACAGGAAGAAAAGATCTGCTATCTTCGATCTACTTCACTGCCAATACAGAAAGACAAGA
TCTGCTATTTTCAGTCTGCTTTATTGCAAACTATAG
Found at i:7310247 original size:121 final size:121
Alignment explanation
Indices: 7310029--7310250 Score: 279
Period size: 121 Copynumber: 1.8 Consensus size: 121
7310019 TACAGGAAGA
* * * *
7310029 CAAGATCTGCTATCTTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAGT
1 CAAGATCTGCTATATTCGATCTACTTCACTGCCAATACAGGAAGAAAAGATCTGCTATCTTCAGT
* * * * **
7310094 CTGCTTTATTGCAAACTATAGTATCTTCGATCTGCTTCACTGTCAGTATAGAAAAG
66 CTACTTTACTGCAAACTATAGAAACTGAGATCTGCTTCACTGTCAGTATAGAAAAG
*
7310150 CAAGATCTGCTATATTCGATCTACTTCGCTGCCAATACAGGAAGAAAAGATCTGCTATCTTC-GA
1 CAAGATCTGCTATATTCGATCTACTTCACTGCCAATACAGGAAGAAAAGATCTGCTATCTTCAG-
* *
7310214 TCTACTTTGCTGCCAA-TATAGAAAGAC-GAGATCTGCT
65 TCTACTTTACTGCAAACTATAG-AA-ACTGAGATCTGCT
7310251 ATCTTCGATC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
120 6 0.07
121 78 0.92
122 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (121 bp):
CAAGATCTGCTATATTCGATCTACTTCACTGCCAATACAGGAAGAAAAGATCTGCTATCTTCAGT
CTACTTTACTGCAAACTATAGAAACTGAGATCTGCTTCACTGTCAGTATAGAAAAG
Found at i:7310315 original size:45 final size:45
Alignment explanation
Indices: 7310115--7310478 Score: 317
Period size: 45 Copynumber: 8.1 Consensus size: 45
7310105 CAAACTATAG
* * * * *
7310115 TATCTTCGATCTGCTTCACTGTCAGTATA-GAAAAGCAAGATCTGC
1 TATCTTCGATCTGCTTCGCTGCCAATACAGGAAGA-CAAGATCTGC
* * *
7310160 TATATTCGATCTACTTCGCTGCCAATACAGGAAGAAAAGATCTGC
1 TATCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGC
* * * * *
7310205 TATCTTCGATCTACTTTGCTGCCAATATAGAAAGACGAGATCTGC
1 TATCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGC
* *
7310250 TATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGC
1 TATCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGC
* * * * * *
7310295 TATCTTC-AGTTTGCTCCGCTGTCAATACAGGAAGGCAAG-GCTGG
1 TATCTTCGA-TCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGC
* ** ** * * *
7310339 TGTCTTCGATCTGCTTCGCTATCGGTACAAGAAGGCATGATCTGC
1 TATCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGC
* * * *
7310384 TATCTT-TAGTCTG-TTCCGCTGTCAATACAGGAAGACAAG-GCTGG
1 TATCTTCGA-TCTGCTT-CGCTGCCAATACAGGAAGACAAGATCTGC
* * * *
7310428 TGTCTTCGATCTGCTTTGCTGCCAGTACAGGAAGGCAAGATCTGC
1 TATCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGC
7310473 TATCTT
1 TATCTT
7310479 TAGTCTGCTT
Statistics
Matches: 255, Mismatches: 55, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
44 67 0.26
45 184 0.72
46 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (45 bp):
TATCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGC
Found at i:7310321 original size:90 final size:89
Alignment explanation
Indices: 7310156--7310487 Score: 342
Period size: 89 Copynumber: 3.7 Consensus size: 89
7310146 AAAGCAAGAT
* * *
7310156 CTGCTATATTCGATCTACTTCGCTGCCAATACAGGAAGAAAAGATCTGCTATCTTC-GATCTACT
1 CTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAG-TCTGCT
** * * * *
7310220 TTGCTGCCAATATAGAAAGACGAGAT
65 CCGCTGTCAATACAGAAAGACAAG-G
* *
7310246 CTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTCAGTTTGCTC
1 CTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
* *
7310311 CGCTGTCAATACAGGAAGGCAAGG
66 CGCTGTCAATACAGAAAGACAAGG
* * * ** ** * * * * *
7310335 CTGGTGTCTTCGATCTGCTTCGCTATCGGTACAAGAAGGCATGATCTGCTATCTTTAGTCTGTTC
1 CTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
*
7310400 CGCTGTCAATACAGGAAGACAAGG
66 CGCTGTCAATACAGAAAGACAAGG
* * * * * * *
7310424 CTGGTGTCTTCGATCTGCTTTGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
1 CTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCT
7310488 TTACTGAAAA
Statistics
Matches: 206, Mismatches: 35, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
89 131 0.64
90 74 0.36
91 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (89 bp):
CTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
CGCTGTCAATACAGAAAGACAAGG
Found at i:7310553 original size:45 final size:45
Alignment explanation
Indices: 7310504--7310990 Score: 291
Period size: 45 Copynumber: 11.2 Consensus size: 45
7310494 AAAACTATGG
* * * * *
7310504 TATCTTCGATCTGCTTCACTGTCAGTATAGGAAGGCAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* *
7310549 TATCTTCGATCTACTTCACTGCCAATACAGGAAGATAAGATCTGT
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * * *
7310594 TATTTTCGATCTACTTCGCTGCCAATATAGAAAGACAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
*
7310639 TATCTTCGATCTACTTTACTGCCAATACAGGAAGACAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * * * * * * **
7310684 TATCTTC-AGTCTGCTTTATTGCAAACTATA-GTA-TCTTTGATCTGC
1 TATCTTCGA-TCTACTTCACTGCCAA-TACAGGAAGAC-AAGATCTGC
* * * * ** **
7310729 T-TC-ACTG-TC-A-GT-ACAG--AA-A-AGTAAGATCTACTAT-TTT
1 TATCTTC-GATCTACTTCACTGCCAATACAGGAAGA-C-AAGATCTGC
*
7310766 TGATC-T--A----CTTCGCTGCCAATACAGGAAGACAAGATCTGC
1 T-ATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
** * *
7310805 TATCTTCGATCTACTTTGCTGCCAATATAGGAAGACGAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * *
7310850 TATCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGGTCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * * * * * * *
7310895 TATCTTC-AGTCTGCTCCGCTGTCAGTACAGGAAGGCAAG-GCTGG
1 TATCTTCGA-TCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * * * *
7310939 TATCTTCGATCTGCTTCACTGTCAGTACAGGAGGGCAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
7310984 TATCTTC
1 TATCTTC
7310991 ATTGATCTGT
Statistics
Matches: 347, Mismatches: 67, Indels: 56
0.74 0.14 0.12
Matches are distributed among these distances:
35 2 0.01
36 4 0.01
37 2 0.01
38 14 0.04
39 7 0.02
40 8 0.02
41 2 0.01
43 3 0.01
44 42 0.12
45 260 0.75
46 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (45 bp):
TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
Found at i:7310680 original size:211 final size:211
Alignment explanation
Indices: 7309904--7310909 Score: 751
Period size: 211 Copynumber: 4.7 Consensus size: 211
7309894 AAAACTATGG
* * * * * **
7309904 TATCTTCGATCTGCTTCATTGTCAGTATAGGAAGGTAAGATCTGCTATCTTCGATCTACTTCGCT
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCT
* * * * * ** * *
7309969 GCCAATACAGGAAGATAAGATCTACTATTTTTTATCTACTTCGCTACCAATACAGGAAGACAAGA
66 GCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATACAGGAAGACAAGA
* * * ** * * * ** * *
7310034 TCTGCTATCTT-TGATCTACTTCACTGCCAA-TACAGGAAGAC-AAGATCTGC-T-ATTTTCAGT
131 TCTGCTATCTTCAG-TCTGCTTTACTGAAAACTATA-GTA-TCTTCGATCTGCTTCACTGTCAGT
* * ** * *
7310094 -CTGCTTTATTGCAA-ACTATAG
193 ACAG---AAAAGCAAGA-TCTAC
* * * * * *
7310115 TATCTTCGATCTGCTTCACTGTCAGTATA-GAAAAGCAAGATCTGCTATATTCGATCTACTTCGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGA-CAAGATCTGCTATCTTCGATCTACTTCGC
* * * * * *
7310179 TGCCAATACAGGAAGAAAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGAAAGACGAG
65 TGCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATACAGGAAGACAAG
* * * * * * *
7310244 ATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTC-AGTTTG
130 ATCTGCTATCTTC-A-GT-C-T-GCT----TTAC-TGAAAACTA--T-AG-TATCTTCGA-TCTG
* * * * * * **
7310308 CTCCGCTGTCAATACAGGAAGGCAAG-GCTGG
180 CTTCACTGTCAGTACAGAAAAGCAAGATCTAC
* * * ** ** * * * * *
7310339 TGTCTTCGATCTGCTTCGCTATCGGTACAAGAAGGCATGATCTGCTATCTT-TAGTCT-GTTCCG
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCGA-TCTACTT-CG
* * * * * * * * *
7310402 CTGTCAATACAGGAAGACAAG-GCTGGTGTCTTCGATCTGCTTTGCTGCCAGTACAGGAAGGCAA
64 CTGCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATACAGGAAGACAA
* *
7310466 GATCTGCTATCTTTAGTCTGCTTTACTGAAAACTATGGTATCTTCGATCTGCTTCACTGTCAGTA
129 GATCTGCTATCTTCAGTCTGCTTTACTGAAAACTATAGTATCTTCGATCTGCTTCACTGTCAGTA
* * * *
7310531 TAGGAAGGCAAGATCTGC
194 CAGAAAAGCAAGATCTAC
* * *
7310549 TATCTTCGATCTACTTCACTGCCAATACAGGAAGATAAGATCTGTTATTTTCGATCTACTTCGCT
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCT
*
7310614 GCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTACTGCCAATACAGGAAGACAAGA
66 GCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATACAGGAAGACAAGA
* * *
7310679 TCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAGTATCTTTGATCTGCTTCACTGTCAGTACA
131 TCTGCTATCTTCAGTCTGCTTTACTGAAAACTATAGTATCTTCGATCTGCTTCACTGTCAGTACA
*
7310744 GAAAAGTAAGATCTAC
196 GAAAAGCAAGATCTAC
* * * *
7310760 TATTTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTTGCT
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCT
* * * * *
7310825 GCCAATATAGGAAGACGAGATCTGCTATCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGG
66 GCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATACAGGAAGACAAGA
7310890 TCTGCTATCTTCAGTCTGCT
131 TCTGCTATCTTCAGTCTGCT
7310910 CCGCTGTCAG
Statistics
Matches: 636, Mismatches: 128, Indels: 62
0.77 0.15 0.08
Matches are distributed among these distances:
209 32 0.05
210 69 0.11
211 372 0.58
213 7 0.01
214 4 0.01
215 1 0.00
216 2 0.00
218 3 0.00
219 1 0.00
220 3 0.00
221 3 0.00
222 2 0.00
223 50 0.08
224 67 0.11
225 13 0.02
227 5 0.01
228 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (211 bp):
TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCT
GCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATACAGGAAGACAAGA
TCTGCTATCTTCAGTCTGCTTTACTGAAAACTATAGTATCTTCGATCTGCTTCACTGTCAGTACA
GAAAAGCAAGATCTAC
Found at i:7310734 original size:166 final size:166
Alignment explanation
Indices: 7310549--7310856 Score: 483
Period size: 166 Copynumber: 1.9 Consensus size: 166
7310539 CAAGATCTGC
* **
7310549 TATCTTCGATCTACTTCACTGCCAATACAG-GAAGATAAGATCTGTTATTTTCGATCTACTTCGC
1 TATCTTCGATCTACTTCACTGCCAATACAGAAAAG-TAAGATCTACTATTTTCGATCTACTTCGC
*
7310613 TGCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTACTGCCAATACAGGAAGACAAG
65 TGCCAATACAGAAAGACAAGATCTGCTATCTTCGATCTACTTTACTGCCAATACAGGAAGACAAG
7310678 ATCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAG
130 ATCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAG
* * * * *
7310715 TATCTTTGATCTGCTTCACTGTCAGTACAGAAAAGTAAGATCTACTATTTTTGATCTACTTCGCT
1 TATCTTCGATCTACTTCACTGCCAATACAGAAAAGTAAGATCTACTATTTTCGATCTACTTCGCT
* * * *
7310780 GCCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGGAAGACGAGA
66 GCCAATACAGAAAGACAAGATCTGCTATCTTCGATCTACTTTACTGCCAATACAGGAAGACAAGA
7310845 TCTGCTATCTTC
131 TCTGCTATCTTC
7310857 GATCTACTTC
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
166 125 0.98
167 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (166 bp):
TATCTTCGATCTACTTCACTGCCAATACAGAAAAGTAAGATCTACTATTTTCGATCTACTTCGCT
GCCAATACAGAAAGACAAGATCTGCTATCTTCGATCTACTTTACTGCCAATACAGGAAGACAAGA
TCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAG
Found at i:7310847 original size:121 final size:121
Alignment explanation
Indices: 7310630--7310850 Score: 277
Period size: 121 Copynumber: 1.8 Consensus size: 121
7310620 ATAGAAAGAC
* *
7310630 AAGATCTGCTATCTTCGATCTACTTTACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTC
1 AAGATCTACTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTC
* * * * **
7310695 TGCTTTATTGCAAACTATAGTATCTTTGATCTGCTTCACTGTCAGTACAGAAAAGT
66 TACTTTACTGCAAACTATAGAAACTGAGATCTGCTTCACTGTCAGTACAGAAAAGT
* * *
7310751 AAGATCTACTATTTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTC-GAT
1 AAGATCTACTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAG-T
* *
7310815 CTACTTTGCTGCCAA-TATAGGAAGAC-GAGATCTGCT
65 CTACTTTACTGCAAACTATA-GAA-ACTGAGATCTGCT
7310851 ATCTTCGATC
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
120 5 0.06
121 78 0.93
122 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (121 bp):
AAGATCTACTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTC
TACTTTACTGCAAACTATAGAAACTGAGATCTGCTTCACTGTCAGTACAGAAAAGT
Found at i:7310876 original size:600 final size:600
Alignment explanation
Indices: 7309736--7310991 Score: 2107
Period size: 600 Copynumber: 2.1 Consensus size: 600
7309726 CTACAAACTA
* * * * *
7309736 TGGTGTCTTCAATCTGCTTCACTGTTAGTACATGAAGGTAAGATCTGCTATCTTCAGTCTGCTCT
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * *
7309801 GCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTACTTTGATGCCAGTATAGGAAGACAA
66 GCTGTCAATACAGGAAGACAAGGCTGGTGTCTTCGATCTACTTTGATGCCAGTACAGGAAGACAA
*
7309866 GATCTGCTATCTTCAGTCTGCTTTACTGAAAACTATGGTATCTTCGATCTGCTTCATTGTCAGTA
131 GATCTGCTATCTTCAGTCTGCTTTACTGAAAACTATGGTATCTTCGATCTGCTTCACTGTCAGTA
* *
7309931 TAGGAAGGTAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGATAAGATCTACTA
196 TAGGAAGGCAAGATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGATAAGATCTACTA
** * *
7309996 TTTTTTATCTACTTCGCTACCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCACTGC
261 TTTTCGATCTACTTCGCTACCAATACAGAAAGACAAGATCTGCTATCTTCGATCTACTTCACTGC
*
7310061 CAATACAGGAAGACAAGATCTGCTATTTTCAGTCTGCTTTATTGCAAACTATAGTATCTTCGATC
326 CAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAGTATCTTCGATC
* *
7310126 TGCTTCACTGTCAGTATAGAAAAGCAAGATCTGCTATATTCGATCTACTTCGCTGCCAATACAGG
391 TGCTTCACTGTCAGTACAGAAAAGCAAGATCTACTATATTCGATCTACTTCGCTGCCAATACAGG
7310191 AAGAAAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGAAAGACGAGATCTGCTATCTT
456 AAGAAAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGAAAGACGAGATCTGCTATCTT
*
7310256 CGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTCAGTTTGCTCCGCTGTCAAT
521 CGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTCAGTCTGCTCCGCTGTCAAT
7310321 ACAGGAAGGCAAGGC
586 ACAGGAAGGCAAGGC
* * * * * *
7310336 TGGTGTCTTCGATCTGCTTCGCTATCGGTACAAGAAGGCATGATCTGCTATCTTTAGTCTGTTCC
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * *
7310401 GCTGTCAATACAGGAAGACAAGGCTGGTGTCTTCGATCTGCTTTGCTGCCAGTACAGGAAGGCAA
66 GCTGTCAATACAGGAAGACAAGGCTGGTGTCTTCGATCTACTTTGATGCCAGTACAGGAAGACAA
*
7310466 GATCTGCTATCTTTAGTCTGCTTTACTGAAAACTATGGTATCTTCGATCTGCTTCACTGTCAGTA
131 GATCTGCTATCTTCAGTCTGCTTTACTGAAAACTATGGTATCTTCGATCTGCTTCACTGTCAGTA
**
7310531 TAGGAAGGCAAGATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGATAAGATCTGTTA
196 TAGGAAGGCAAGATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGATAAGATCTACTA
* * *
7310596 TTTTCGATCTACTTCGCTGCCAATATAGAAAGACAAGATCTGCTATCTTCGATCTACTTTACTGC
261 TTTTCGATCTACTTCGCTACCAATACAGAAAGACAAGATCTGCTATCTTCGATCTACTTCACTGC
*
7310661 CAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAGTATCTTTGATC
326 CAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAGTATCTTCGATC
* * *
7310726 TGCTTCACTGTCAGTACAGAAAAGTAAGATCTACTATTTTTGATCTACTTCGCTGCCAATACAGG
391 TGCTTCACTGTCAGTACAGAAAAGCAAGATCTACTATATTCGATCTACTTCGCTGCCAATACAGG
* *
7310791 AAGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGGAAGACGAGATCTGCTATCTT
456 AAGAAAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGAAAGACGAGATCTGCTATCTT
* *
7310856 CGATCTACTTCGCTGCCAATATAGGAAGACAAGGTCTGCTATCTTCAGTCTGCTCCGCTGTCAGT
521 CGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTCAGTCTGCTCCGCTGTCAAT
7310921 ACAGGAAGGCAAGGC
586 ACAGGAAGGCAAGGC
* * *
7310936 TGGTATCTTCGATCTGCTTCACTGTCAGTACAGGAGGGCAAGATCTGCTATCTTCA
1 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCA
7310992 TTGATCTGTT
Statistics
Matches: 606, Mismatches: 50, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
600 606 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (600 bp):
TGGTGTCTTCGATCTGCTTCACTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
GCTGTCAATACAGGAAGACAAGGCTGGTGTCTTCGATCTACTTTGATGCCAGTACAGGAAGACAA
GATCTGCTATCTTCAGTCTGCTTTACTGAAAACTATGGTATCTTCGATCTGCTTCACTGTCAGTA
TAGGAAGGCAAGATCTGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGATAAGATCTACTA
TTTTCGATCTACTTCGCTACCAATACAGAAAGACAAGATCTGCTATCTTCGATCTACTTCACTGC
CAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTTTATTGCAAACTATAGTATCTTCGATC
TGCTTCACTGTCAGTACAGAAAAGCAAGATCTACTATATTCGATCTACTTCGCTGCCAATACAGG
AAGAAAAGATCTGCTATCTTCGATCTACTTTGCTGCCAATATAGAAAGACGAGATCTGCTATCTT
CGATCTACTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATCTTCAGTCTGCTCCGCTGTCAAT
ACAGGAAGGCAAGGC
Found at i:7312069 original size:7 final size:7
Alignment explanation
Indices: 7312053--7312109 Score: 53
Period size: 7 Copynumber: 7.6 Consensus size: 7
7312043 TGGCCTCTCC
7312053 TTTTCTTT
1 TTTTC-TT
7312061 TTTTCTT
1 TTTTCTT
7312068 TTTTCTT
1 TTTTCTT
*
7312075 TTCTCTT
1 TTTTCTT
7312082 CTTCTT-TCT
1 -TT-TTCT-T
7312091 TTTTCTT
1 TTTTCTT
7312098 TTTCTCTT
1 TTT-TCTT
7312106 TTTT
1 TTTT
7312110 TCCTCTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
7 22 0.52
8 18 0.43
9 2 0.05
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTCTT
Found at i:7312116 original size:29 final size:29
Alignment explanation
Indices: 7312058--7312130 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
7312048 TCTCCTTTTC
*
7312058 TTTTTTTCTTTTTTCTTTTCTCTTCTTCT
1 TTTTTTTCTTTTTTCTTTTCTCTTCCTCT
7312087 TTCTTTTTCTTTTTCTCTTTT-T-TTCCTCT
1 TT-TTTTTCTTTTT-TCTTTTCTCTTCCTCT
*
7312116 TTTTTTATATTTTTT
1 TTTTTT-TCTTTTTT
7312131 ATTGAATCTG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
28 5 0.13
29 16 0.41
30 12 0.31
31 6 0.15
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (29 bp):
TTTTTTTCTTTTTTCTTTTCTCTTCCTCT
Found at i:7312118 original size:24 final size:21
Alignment explanation
Indices: 7312056--7312111 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 21
7312046 CCTCTCCTTT
7312056 TCTTTTTTTCTTTTTTCTTTTC
1 TCTTTTTTTC-TTTTTCTTTTC
7312078 TCTTCTTCTTTCTTTTTCTTTTTC
1 TCTT-TT-TTTCTTTTTC-TTTTC
7312102 TCTTTTTTTC
1 TCTTTTTTTC
7312112 CTCTTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
22 8 0.26
23 10 0.32
24 13 0.42
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (21 bp):
TCTTTTTTTCTTTTTCTTTTC
Found at i:7314806 original size:19 final size:20
Alignment explanation
Indices: 7314777--7314828 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
7314767 CATTTTGTAA
* *
7314777 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
7314796 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
7314816 AAATG-AATGCAAA
1 AAATGTAATGCAAA
7314829 AAGAGACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:7316945 original size:45 final size:44
Alignment explanation
Indices: 7316850--7316947 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 44
7316840 TATAAGTAAG
* * * *
7316850 CATATACATATATACGTATGTAATTATCATAAAATATAAAAAGTA
1 CATATATATATATACGTATATAATAATCATAAAATAT-AAAAGAA
* *
7316895 TATATATATATATAGGTATATATATGAATCATAAAATAT-AAAGAA
1 CATATATATATATACGTATATA-AT-AATCATAAAATATAAAAGAA
7316940 CATATATA
1 CATATATA
7316948 AAATACATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
45 30 0.68
46 2 0.05
47 12 0.27
ACGTcount: A:0.52, C:0.06, G:0.07, T:0.35
Consensus pattern (44 bp):
CATATATATATATACGTATATAATAATCATAAAATATAAAAGAA
Found at i:7318787 original size:7 final size:7
Alignment explanation
Indices: 7318775--7318804 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
7318765 GAGTTGGAAG
7318775 GGGGAGA
1 GGGGAGA
7318782 GGGGAGA
1 GGGGAGA
7318789 GGGGAGA
1 GGGGAGA
7318796 GGGGAGA
1 GGGGAGA
7318803 GG
1 GG
7318805 AGAAGGTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.27, C:0.00, G:0.73, T:0.00
Consensus pattern (7 bp):
GGGGAGA
Found at i:7320062 original size:18 final size:18
Alignment explanation
Indices: 7320041--7320125 Score: 80
Period size: 18 Copynumber: 4.7 Consensus size: 18
7320031 TTTGGTTAAA
* *
7320041 AATTAACTAAATTAATCG
1 AATTAACCAAATTAACCG
** *
7320059 AATTAACTGAATTAATCG
1 AATTAACCAAATTAACCG
* *
7320077 AATTACCCAAATTACCCG
1 AATTAACCAAATTAACCG
* *
7320095 AATTACCCGAATTAACCG
1 AATTAACCAAATTAACCG
*
7320113 AATTAACCGAATT
1 AATTAACCAAATT
7320126 GAATCACTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (18 bp):
AATTAACCAAATTAACCG
Found at i:7320079 original size:9 final size:9
Alignment explanation
Indices: 7320050--7320125 Score: 89
Period size: 9 Copynumber: 8.4 Consensus size: 9
7320040 AAATTAACTA
*
7320050 AATTAATCG
1 AATTAACCG
*
7320059 AATTAACTG
1 AATTAACCG
*
7320068 AATTAATCG
1 AATTAACCG
* *
7320077 AATTACCCA
1 AATTAACCG
*
7320086 AATTACCCG
1 AATTAACCG
*
7320095 AATTACCCG
1 AATTAACCG
7320104 AATTAACCG
1 AATTAACCG
7320113 AATTAACCG
1 AATTAACCG
7320122 AATT
1 AATT
7320126 GAATCACTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:7323027 original size:13 final size:13
Alignment explanation
Indices: 7323009--7323047 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7322999 AAAACGTTAA
7323009 AAAAATAAAAAAT
1 AAAAATAAAAAAT
7323022 AAAAATAAAAAAT
1 AAAAATAAAAAAT
* *
7323035 TATAA-AAAAAAT
1 AAAAATAAAAAAT
7323047 A
1 A
7323048 TTTTCCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:7329158 original size:3 final size:3
Alignment explanation
Indices: 7329150--7329204 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
7329140 ACCCAATATA
* * * * * *
7329150 AAT AAT AAT ACT AAT AGT TAT AAT AAC ATT AAT AAT AAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7329198 AAT AAT A
1 AAT AAT A
7329205 GTTGAGTAAT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7332727 original size:34 final size:35
Alignment explanation
Indices: 7332683--7332749 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
7332673 CAGTAAAATA
* *
7332683 TTTTCCGTAAAATTATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
7332717 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
7332750 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Done.