Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 24 of 131
Found at i:7889001 original size:26 final size:28
Alignment explanation
Indices: 7888944--7889003 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
7888934 TAATTTTCGT
* *
7888944 AATAT-TTTTTATTGTATAAATTTTAAA
1 AATATATTTTTATTGTAGAAATTTAAAA
*
7888971 TATATATTTTT-TTG-AGAAATTTAAAA
1 AATATATTTTTATTGTAGAAATTTAAAA
7888997 AATATAT
1 AATATAT
7889004 ATTTCGTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 16 0.57
27 7 0.25
28 5 0.18
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (28 bp):
AATATATTTTTATTGTAGAAATTTAAAA
Found at i:7890409 original size:23 final size:23
Alignment explanation
Indices: 7890383--7890426 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7890373 ATTTAATCTC
7890383 TTCA-AAAGTAATAAAATTATAAA
1 TTCATAAA-TAATAAAATTATAAA
*
7890406 TTCATATATAATAAAATTATA
1 TTCATAAATAATAAAATTATA
7890427 TTTTGATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (23 bp):
TTCATAAATAATAAAATTATAAA
Found at i:7892006 original size:19 final size:19
Alignment explanation
Indices: 7891960--7892002 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7891950 ATCAAATTTA
*
7891960 ATAAATAATATTATAATAT
1 ATAAATAATATTAGAATAT
7891979 ATAAATAATATTAGAA-AT
1 ATAAATAATATTAGAATAT
7891997 ATAAAT
1 ATAAAT
7892003 TAATCGGTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAAATAATATTAGAATAT
Found at i:7892823 original size:3 final size:3
Alignment explanation
Indices: 7892817--7892863 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
7892807 CTTTTTTTTC
7892817 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7892864 GGGAAAACAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7893738 original size:18 final size:17
Alignment explanation
Indices: 7893698--7893740 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
7893688 TAACAATAAC
7893698 TATAAAAAGTTAAAAAA
1 TATAAAAAGTTAAAAAA
* * *
7893715 TCTAAAATATTTAAAAAT
1 TATAAAA-AGTTAAAAAA
7893733 TATAAAAA
1 TATAAAAA
7893741 TTCTTATTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
TATAAAAAGTTAAAAAA
Found at i:7895051 original size:31 final size:31
Alignment explanation
Indices: 7894992--7895052 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
7894982 TTAATAGACT
*
7894992 AGTGACTTAAATAGAAACTTCTATATAATTC
1 AGTGACTTAAATAGAAACTTCTAAATAATTC
7895023 AGTGACTTAAAT-GAAAACTT-TCAAATAATT
1 AGTGACTTAAATAG-AAACTTCT-AAATAATT
7895053 TAATAACTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.34
Consensus pattern (31 bp):
AGTGACTTAAATAGAAACTTCTAAATAATTC
Found at i:7898351 original size:15 final size:15
Alignment explanation
Indices: 7898333--7898362 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7898323 TAGAATCAGA
7898333 AGGAGCTGATGGAGC
1 AGGAGCTGATGGAGC
*
7898348 AGGAGCTGTTGGAGC
1 AGGAGCTGATGGAGC
7898363 TAGTAGAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.47, T:0.17
Consensus pattern (15 bp):
AGGAGCTGATGGAGC
Found at i:7898561 original size:20 final size:20
Alignment explanation
Indices: 7898536--7898577 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7898526 TGTTCTAGAC
7898536 ATTTAACTCCTACTCCTCTT
1 ATTTAACTCCTACTCCTCTT
7898556 ATTTAACTCCTACTCCTCTT
1 ATTTAACTCCTACTCCTCTT
7898576 AT
1 AT
7898578 CCTCTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTAACTCCTACTCCTCTT
Found at i:7901790 original size:11 final size:11
Alignment explanation
Indices: 7901774--7901806 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7901764 AAAAGTGTAT
7901774 AGAAAAACTAA
1 AGAAAAACTAA
*
7901785 AGAAAACCTAA
1 AGAAAAACTAA
7901796 AGAAAAA-TAA
1 AGAAAAACTAA
7901806 A
1 A
7901807 CGTAAAGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.73, C:0.09, G:0.09, T:0.09
Consensus pattern (11 bp):
AGAAAAACTAA
Found at i:7903542 original size:35 final size:33
Alignment explanation
Indices: 7903485--7903662 Score: 145
Period size: 32 Copynumber: 5.3 Consensus size: 33
7903475 TACATGATAA
*
7903485 ACATACATA-TTATAAATAGTAATAAACATAACAT
1 ACATACATACATA-AAATAGTAATAAACAT-ACAT
*
7903519 AACATAACAT-CATAAAATCGTAATAAACATACAT
1 -ACAT-ACATACATAAAATAGTAATAAACATACAT
* *
7903553 ACATACATACAT-ACATACATACATACATACATACAT
1 ACATACATACATAAAATA-GTA-ATA-A-ACATACAT
* *
7903589 ACATACATACAT-ACATA--CATACATACATACAT
1 ACATACATACATAAAATAGTAATA-A-ACATACAT
*
7903621 ACATACATACA-AAAACAGTAATAAACATAACAT
1 ACATACATACATAAAATAGTAATAAACAT-ACAT
7903654 ACATACATA
1 ACATACATA
7903663 AACAGTAACA
Statistics
Matches: 123, Mismatches: 9, Indels: 24
0.79 0.06 0.15
Matches are distributed among these distances:
32 39 0.32
33 23 0.19
34 10 0.08
35 20 0.16
36 31 0.25
ACGTcount: A:0.54, C:0.20, G:0.02, T:0.24
Consensus pattern (33 bp):
ACATACATACATAAAATAGTAATAAACATACAT
Found at i:7903554 original size:4 final size:4
Alignment explanation
Indices: 7903545--7903683 Score: 175
Period size: 4 Copynumber: 35.2 Consensus size: 4
7903535 ATCGTAATAA
7903545 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
7903593 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA- A-AA ACAGT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA-T
7903640 A-AT A-A- ACAT AACAT ACAT ACAT A-A- ACAGT AACAT AACAT ACAT
1 ACAT ACAT ACAT -ACAT ACAT ACAT ACAT ACA-T -ACAT -ACAT ACAT
7903683 A
1 A
7903684 AAATAAATAA
Statistics
Matches: 124, Mismatches: 1, Indels: 20
0.86 0.01 0.14
Matches are distributed among these distances:
2 3 0.02
3 8 0.06
4 99 0.80
5 11 0.09
6 3 0.02
ACGTcount: A:0.54, C:0.22, G:0.01, T:0.22
Consensus pattern (4 bp):
ACAT
Found at i:7903665 original size:29 final size:29
Alignment explanation
Indices: 7903561--7903751 Score: 150
Period size: 28 Copynumber: 6.7 Consensus size: 29
7903551 ATACATACAT
*
7903561 ACATACATACATACATACATACA-T-ACAT-
1 ACATACATACATACATA-A-ACAGTAATATA
*
7903589 ACATACATACATACATACATACA-T-ACAT-
1 ACATACATACATACATA-A-ACAGTAATATA
*
7903617 ACATACATACATACAAAAACAGTAATA-A
1 ACATACATACATACATAAACAGTAATATA
*
7903645 ACATAACATACATACATAAACAGTAACATA
1 ACAT-ACATACATACATAAACAGTAATATA
* * * *
7903675 ACATACATAAAATAAATAAACACT-ACATA
1 ACATACAT-ACATACATAAACAGTAATATA
*
7903704 ACATACATAAAATACATAAACAGTAATAT-
1 ACATACAT-ACATACATAAACAGTAATATA
*
7903733 AC-TGCATAACATACATAAA
1 ACATACAT-ACATACATAAA
7903752 ATACATAAAC
Statistics
Matches: 144, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
26 3 0.02
27 2 0.01
28 65 0.45
29 54 0.38
30 20 0.14
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (29 bp):
ACATACATACATACATAAACAGTAATATA
Found at i:7903716 original size:25 final size:26
Alignment explanation
Indices: 7903644--7903717 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 26
7903634 AACAGTAATA
* *
7903644 AACATAACATACAT-ACATAAACAGT
1 AACATAACATACATAAAATAAACACT
7903669 AACATAACATACATAAAATAAATAAACACT
1 AACATAACATACAT---A-AAATAAACACT
7903699 -ACATAACATACATAAAATA
1 AACATAACATACATAAAATA
7903718 CATAAACAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
25 19 0.45
26 1 0.02
29 13 0.31
30 9 0.21
ACGTcount: A:0.61, C:0.18, G:0.01, T:0.20
Consensus pattern (26 bp):
AACATAACATACATAAAATAAACACT
Found at i:7903750 original size:37 final size:35
Alignment explanation
Indices: 7903700--7903825 Score: 146
Period size: 37 Copynumber: 3.4 Consensus size: 35
7903690 ATAAACACTA
7903700 CATAACATACATAAAATACATAAACAGTAATATACT
1 CATAACATACATAAAATACATAAACAGTAATATA-T
*
7903736 GCATAACATACATAAAATACATAAACAATAATATATT
1 -CATAACATACATAAAATACATAAACAGTAATATA-T
* *
7903773 ACATAACATGCATAATATATATGCATAAGCAGTAATATA-
1 -CATAACATACATAA-A-ATA--CATAAACAGTAATATAT
7903812 CATAACATACATAA
1 CATAACATACATAA
7903826 TAGAAATACT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
37 47 0.60
38 14 0.18
39 3 0.04
41 14 0.18
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.26
Consensus pattern (35 bp):
CATAACATACATAAAATACATAAACAGTAATATAT
Found at i:7903775 original size:19 final size:19
Alignment explanation
Indices: 7903641--7903778 Score: 65
Period size: 19 Copynumber: 7.2 Consensus size: 19
7903631 AAAAACAGTA
*
7903641 ATAAAC-ATAACATACATAC
1 ATAAACAATAATATA-ATAC
* *
7903660 ATAAACAGTAACATAACATAC
1 ATAAACAATAATAT-A-ATAC
*
7903681 AT-AA-AATAAATAAACACTAC
1 ATAAACAAT-AATATA-A-TAC
*
7903701 AT-AAC-ATACATAAAATAC
1 ATAAACAATA-ATATAATAC
* * *
7903719 ATAAACAGTAATATACTGC
1 ATAAACAATAATATAATAC
*
7903738 AT-AAC-ATACATAAAATAC
1 ATAAACAATA-ATATAATAC
*
7903756 ATAAACAATAATATATTAC
1 ATAAACAATAATATAATAC
7903775 ATAA
1 ATAA
7903779 CATGCATAAT
Statistics
Matches: 94, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
17 2 0.02
18 16 0.17
19 38 0.40
20 30 0.32
21 8 0.09
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.23
Consensus pattern (19 bp):
ATAAACAATAATATAATAC
Found at i:7903975 original size:9 final size:9
Alignment explanation
Indices: 7903949--7904100 Score: 73
Period size: 9 Copynumber: 16.3 Consensus size: 9
7903939 ATCAGTTATA
7903949 ATACATAAAC
1 ATACAT-AAC
7903959 ACTACATAAC
1 A-TACATAAC
*
7903969 ATACATAAA
1 ATACATAAC
7903978 ATACATAA-
1 ATACATAAC
*
7903986 ATAGTAATATAC
1 ATA--CATA-AC
7903998 -TACATAAC
1 ATACATAAC
*
7904006 ATACATAAA
1 ATACATAAC
7904015 ATACATAAAC
1 ATACAT-AAC
*
7904025 GGTA-ATATA-
1 -ATACATA-AC
*
7904034 TTACATAAC
1 ATACATAAC
* *
7904043 ATACGTAAT
1 ATACATAAC
*
7904052 ATACAT-GC
1 ATACATAAC
*
7904060 ATAAACAGTAAT
1 AT--ACA-TAAC
7904072 ATACATAAC
1 ATACATAAC
*
7904081 ATACATAAT
1 ATACATAAC
7904090 ATACAT-AC
1 ATACATAAC
7904098 ATA
1 ATA
7904101 ACAGACATTC
Statistics
Matches: 109, Mismatches: 18, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
8 14 0.13
9 63 0.58
10 19 0.17
11 11 0.10
12 2 0.02
ACGTcount: A:0.54, C:0.16, G:0.04, T:0.26
Consensus pattern (9 bp):
ATACATAAC
Found at i:7904009 original size:37 final size:37
Alignment explanation
Indices: 7903959--7904096 Score: 165
Period size: 37 Copynumber: 3.7 Consensus size: 37
7903949 ATACATAAAC
*
7903959 ACTACATAACATACATAAAATACATAAATAGTAATAT
1 ACTACATAACATACATAAAATACATAAACAGTAATAT
*
7903996 ACTACATAACATACATAAAATACATAAACGGTAATAT
1 ACTACATAACATACATAAAATACATAAACAGTAATAT
* * *
7904033 ATTACATAACATACGTAATATACATGCATAAACAGT-A-AT
1 ACTACATAACATAC---ATA-AAATACATAAACAGTAATAT
*
7904072 A-TACATAACATACATAATATACATA
1 ACTACATAACATACATAAAATACATA
7904097 CATAACAGAC
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
34 7 0.08
35 3 0.03
37 48 0.54
38 12 0.13
39 3 0.03
40 4 0.04
41 12 0.13
ACGTcount: A:0.54, C:0.15, G:0.04, T:0.27
Consensus pattern (37 bp):
ACTACATAACATACATAAAATACATAAACAGTAATAT
Found at i:7904108 original size:13 final size:13
Alignment explanation
Indices: 7904079--7904128 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
7904069 AATATACATA
* *
7904079 ACATACATAATAT
1 ACATACATAACAG
7904092 ACATACATAACAG
1 ACATACATAACAG
*
7904105 ACATTCATAACAG
1 ACATACATAACAG
*
7904118 AAATAC-TAACA
1 ACATACATAACA
7904129 AACTGACCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 5 0.16
13 27 0.84
ACGTcount: A:0.54, C:0.20, G:0.04, T:0.22
Consensus pattern (13 bp):
ACATACATAACAG
Found at i:7904226 original size:289 final size:297
Alignment explanation
Indices: 7903670--7904242 Score: 803
Period size: 289 Copynumber: 1.9 Consensus size: 297
7903660 ATAAACAGTA
*
7903670 ACATAACATACATAAAATAAATAAACACTACATAACATACATAAAATACATAAACAGTAATATAC
1 ACATAAAATACATAAAATAAATAAACACTACATAACATACATAAAATACATAAACAGTAATATAC
* *
7903735 TGCATAACATACATAAAATACATAAACAATAATATATTACATAACATGCATAATATATATGCATA
66 TACATAACATACATAAAATACATAAACAATAATATATTACATAACATACATAATATATA-GCATA
* * * *
7903800 AGCAGTAATATACATAACATACATAATAGAAATACTAATAGATTGACCTTTCAGCCTCAATCGAT
130 AGC---AATATACATAACATACATAACAGAAATACTAACAAACTGACCTTTCAGCCTCAATCGAT
*
7903865 TTAACCCTCAAAAAAGAATTCCCTTCAATATAGAGTTCTCTGTATACACACGAATGCCAACAAAA
192 TTAACCCTCAAAAAAGAATTCCCTTCAATATAGAGTTCTCTGCATACACACGAATGCCAACAAAA
7903930 AAATTAGAAATCAGTTATAATACATAAACACTACATAACAT
257 AAATTAGAAATCAGTTATAATACATAAACACTACATAACAT
* * *
7903971 ACATAAAATACAT-AAAT-AGTAATATACTACATAACATACATAAAATACATAAACGGTAATATA
1 ACATAAAATACATAAAATAAATAA-ACACTACATAACATACATAAAATACATAAACAGTAATATA
* * * *
7904034 TTACATAACATACGTAATATACATGCATAAACAGT-A-ATA-TACATAACATACAT-A-ATATA-
65 CTACATAACATAC---ATA-AAATACATAAACAATAATATATTACATAACATACATAATATATAG
* *
7904093 CAT-A-C-ATA-ACA-GACATTCATAACAGAAATACTAACAAACTGACCTTTCAGCCTCAATCGA
126 CATAAGCAATATACATAACATACATAACAGAAATACTAACAAACTGACCTTTCAGCCTCAATCGA
* *
7904153 TTTAACCCTCGAAAAAGAATTCCCTTCAATATGGAGTTCTCTGCATACACACGAATGCCAACAAA
191 TTTAACCCTCAAAAAAGAATTCCCTTCAATATAGAGTTCTCTGCATACACACGAATGCCAACAAA
7904218 AAAATTAGAAATCAGTTATAATACA
256 AAAATTAGAAATCAGTTATAATACA
7904243 AATAAAGTAT
Statistics
Matches: 248, Mismatches: 19, Indels: 22
0.86 0.07 0.08
Matches are distributed among these distances:
289 130 0.52
290 3 0.01
291 3 0.01
295 1 0.00
296 1 0.00
297 3 0.01
299 9 0.04
300 54 0.22
301 25 0.10
302 3 0.01
303 4 0.02
304 12 0.05
ACGTcount: A:0.49, C:0.18, G:0.07, T:0.26
Consensus pattern (297 bp):
ACATAAAATACATAAAATAAATAAACACTACATAACATACATAAAATACATAAACAGTAATATAC
TACATAACATACATAAAATACATAAACAATAATATATTACATAACATACATAATATATAGCATAA
GCAATATACATAACATACATAACAGAAATACTAACAAACTGACCTTTCAGCCTCAATCGATTTAA
CCCTCAAAAAAGAATTCCCTTCAATATAGAGTTCTCTGCATACACACGAATGCCAACAAAAAAAT
TAGAAATCAGTTATAATACATAAACACTACATAACAT
Found at i:7920103 original size:33 final size:33
Alignment explanation
Indices: 7920066--7920128 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
7920056 ACCCCACATG
* *
7920066 CAATTCAATCACA-TTATTTCAAACAATTTCTAA
1 CAATTCAATCAAAGTTATATC-AACAATTTCTAA
7920099 CAATTCAATCAAAGTTATATCAACAATTTC
1 CAATTCAATCAAAGTTATATCAACAATTTC
7920129 AAGAAAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.35
Consensus pattern (33 bp):
CAATTCAATCAAAGTTATATCAACAATTTCTAA
Found at i:7923446 original size:18 final size:18
Alignment explanation
Indices: 7923426--7923497 Score: 65
Period size: 18 Copynumber: 3.8 Consensus size: 18
7923416 TATATTTATT
7923426 TTTTAAAA-ATTTTTTAA
1 TTTTAAAATATTTTTTAA
*
7923443 TTTTAAAATATTTTTAAAATAC
1 TTTTAAAATATTTTT----TAA
** *
7923465 TTTTTTATTATTTTTTAA
1 TTTTAAAATATTTTTTAA
7923483 TTTTAAAATATTTTT
1 TTTTAAAATATTTTT
7923498 AAAATATTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
17 8 0.19
18 20 0.48
22 14 0.33
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAAAATATTTTTTAA
Found at i:7923457 original size:11 final size:11
Alignment explanation
Indices: 7923443--7923508 Score: 61
Period size: 11 Copynumber: 6.4 Consensus size: 11
7923433 AATTTTTTAA
7923443 TTTTAAAATAT
1 TTTTAAAATAT
7923454 TTTTAAAATACT
1 TTTTAAAATA-T
* *
7923466 TTTT-TATTAT
1 TTTTAAAATAT
*
7923476 TTTT----TAA
1 TTTTAAAATAT
7923483 TTTTAAAATAT
1 TTTTAAAATAT
7923494 TTTTAAAATAT
1 TTTTAAAATAT
7923505 TTTT
1 TTTT
7923509 TTATTTTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
7 6 0.13
10 5 0.11
11 30 0.65
12 5 0.11
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:7923480 original size:40 final size:40
Alignment explanation
Indices: 7923434--7923513 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
7923424 TTTTTTAAAA
7923434 ATTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTATT
1 ATTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTATT
*
7923474 ATTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTATT
1 ATTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTATT
7923514 TTTAAAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (40 bp):
ATTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTATT
Found at i:7923486 original size:29 final size:30
Alignment explanation
Indices: 7923454--7923522 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
7923444 TTTAAAATAT
* *
7923454 TTTTAAAATACTTTTT-TATTA-TTTTTTAA
1 TTTTAAAATA-TTTTTAAAATATTTTTTTAA
*
7923483 TTTTAAAATATTTTTAAAATATTTTTTTAT
1 TTTTAAAATATTTTTAAAATATTTTTTTAA
7923513 TTTTAAAATA
1 TTTTAAAATA
7923523 AATTTTTGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 5 0.14
29 13 0.37
30 17 0.49
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTAAAATATTTTTAAAATATTTTTTTAA
Found at i:7923486 original size:30 final size:30
Alignment explanation
Indices: 7923452--7923522 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
7923442 ATTTTAAAAT
* *
7923452 ATTTTTAAAATACTTTTT-TATTATTTTTTA
1 ATTTTTAAAATA-TTTTTAAAATATTTTTTA
*
7923482 A-TTTTAAAATATTTTTAAAATATTTTTTT
1 ATTTTTAAAATATTTTTAAAATATTTTTTA
7923511 ATTTTTAAAATA
1 ATTTTTAAAATA
7923523 AATTTTTGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 5 0.14
29 20 0.56
30 11 0.31
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (30 bp):
ATTTTTAAAATATTTTTAAAATATTTTTTA
Found at i:7923528 original size:20 final size:20
Alignment explanation
Indices: 7923491--7923543 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 20
7923481 AATTTTAAAA
*
7923491 TATTTTTAAAAT-ATTTTTT
1 TATTTTTAAAATAATTTTTG
7923510 TATTTTTAAAATAAATTTTTGG
1 TATTTTTAAAAT-AATTTTT-G
7923532 TATTTATTAAAA
1 TATTT-TTAAAA
7923544 AATGGGCCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 12 0.41
21 6 0.21
22 5 0.17
23 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TATTTTTAAAATAATTTTTG
Found at i:7923536 original size:30 final size:29
Alignment explanation
Indices: 7923451--7923529 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 29
7923441 AATTTTAAAA
* *
7923451 TATTTTTAAAATACTTTTTTAT-TATTTTT
1 TATTTTTAAAATAATTTTTAATAT-TTTTT
*
7923480 TAATTTTAAAAT-ATTTTTAAAATATTTTTT
1 TATTTTTAAAATAATTTTT--AATATTTTTT
7923510 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAAT-AATTTTT
7923530 GGTATTTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
28 5 0.12
29 11 0.27
30 18 0.44
31 1 0.02
32 6 0.15
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TATTTTTAAAATAATTTTTAATATTTTTT
Found at i:7923546 original size:21 final size:19
Alignment explanation
Indices: 7923491--7923546 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 19
7923481 AATTTTAAAA
* *
7923491 TATTTTTAAAATATTTTTT
1 TATTTTTAAAAAATTTTTG
7923510 TATTTTTAAAATAAATTTTTGG
1 TATTTTT-AAA-AAATTTTT-G
7923532 TATTTATTAAAAAAT
1 TATTT-TTAAAAAAT
7923547 GGGCCGGGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 7 0.23
20 3 0.10
21 11 0.35
22 8 0.26
23 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
TATTTTTAAAAAATTTTTG
Found at i:7928547 original size:13 final size:13
Alignment explanation
Indices: 7928529--7928554 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7928519 CAAAAAGGTC
7928529 CTTTAACCATTAA
1 CTTTAACCATTAA
7928542 CTTTAACCATTAA
1 CTTTAACCATTAA
7928555 TTATTAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
CTTTAACCATTAA
Found at i:7942261 original size:11 final size:12
Alignment explanation
Indices: 7942201--7942262 Score: 71
Period size: 11 Copynumber: 5.5 Consensus size: 12
7942191 TAATCCTCTT
7942201 TCAAATTTCCTC
1 TCAAATTTCCTC
7942213 TC-AATTTCCTC
1 TCAAATTTCCTC
*
7942224 TC-AATTTGCTC
1 TCAAATTTCCTC
7942235 TCAAA-TTCCT-
1 TCAAATTTCCTC
7942245 TCCAAATTT-CTC
1 T-CAAATTTCCTC
7942257 TCAAAT
1 TCAAAT
7942263 CCATATTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
10 1 0.02
11 36 0.82
12 7 0.16
ACGTcount: A:0.26, C:0.31, G:0.02, T:0.42
Consensus pattern (12 bp):
TCAAATTTCCTC
Found at i:7942282 original size:51 final size:51
Alignment explanation
Indices: 7942222--7942321 Score: 141
Period size: 51 Copynumber: 2.0 Consensus size: 51
7942212 CTCAATTTCC
7942222 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAA-TCCATATTTAA
1 TCTCAATTTGCTCTCAAATTCCTCT-CAAATTTCTCTCAAATTCC-TATTTAA
* * *
7942273 TCTCAATTTGCTCTCAAGTTCCTCTTAAATTTCTCTTAAATTCCTATTT
1 TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATTCCTATTT
7942322 TTAAATAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
51 40 0.91
52 4 0.09
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATTCCTATTTAA
Found at i:7944863 original size:2 final size:2
Alignment explanation
Indices: 7944856--7944891 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
7944846 ATAACAATTG
* *
7944856 AT AT AT AT AT AT AT AT GT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7944892 GAACTTAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7944871 original size:10 final size:10
Alignment explanation
Indices: 7944856--7944892 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
7944846 ATAACAATTG
*
7944856 ATATATATAT
1 ATATATGTAT
7944866 ATATATGTAT
1 ATATATGTAT
7944876 ATATATGTAT
1 ATATATGTAT
7944886 ATATATG
1 ATATATG
7944893 AACTTAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (10 bp):
ATATATGTAT
Found at i:7949677 original size:34 final size:34
Alignment explanation
Indices: 7949629--7949696 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
7949619 CTAGCTCCAC
7949629 ATCCCTCTTCATATTCAGTATCCATTTCATGCAT
1 ATCCCTCTTCATATTCAGTATCCATTTCATGCAT
* * * *
7949663 ATCCTTCTTCATATTTAGTATTCATTTGATGCAT
1 ATCCCTCTTCATATTCAGTATCCATTTCATGCAT
7949697 CTCTCGCTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.46
Consensus pattern (34 bp):
ATCCCTCTTCATATTCAGTATCCATTTCATGCAT
Found at i:7951108 original size:92 final size:92
Alignment explanation
Indices: 7950951--7951123 Score: 301
Period size: 92 Copynumber: 1.9 Consensus size: 92
7950941 AGGTGTCATC
* *
7950951 TATGGTCCAAACCTTGGCCTCTGCATCTTTCTATTTTCATTTTCTTTGTAATTGACTAAAAGGAA
1 TATGGTCCAAACCTTGGCCTCTGCATCTTGCTATTTTCATTTTCTTTGTAATTGACCAAAAGGAA
*
7951016 TGAATAAGCGAGCAAAATGGGAGTTGG
66 TGAATAAGCAAGCAAAATGGGAGTTGG
* *
7951043 TATGGTCCAAACCTTGGCCTCTGCATCTTGCTATTTTGATTTTCTTTGTAATTGACCAAGAGGAA
1 TATGGTCCAAACCTTGGCCTCTGCATCTTGCTATTTTCATTTTCTTTGTAATTGACCAAAAGGAA
7951108 TGAATAAGCAAGCAAA
66 TGAATAAGCAAGCAAA
7951124 GAAGCATAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (92 bp):
TATGGTCCAAACCTTGGCCTCTGCATCTTGCTATTTTCATTTTCTTTGTAATTGACCAAAAGGAA
TGAATAAGCAAGCAAAATGGGAGTTGG
Found at i:7951511 original size:18 final size:18
Alignment explanation
Indices: 7951490--7951528 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
7951480 TCTGTTCTAT
7951490 TTTACTTGCGTTTTTTTA
1 TTTACTTGCGTTTTTTTA
*
7951508 TTTACTTGCTTTTTTTTA
1 TTTACTTGCGTTTTTTTA
7951526 TTT
1 TTT
7951529 TTTGAGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.08, T:0.72
Consensus pattern (18 bp):
TTTACTTGCGTTTTTTTA
Found at i:7952944 original size:7 final size:8
Alignment explanation
Indices: 7952917--7952941 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7952907 AATGCATTTT
7952917 CCATTTCC
1 CCATTTCC
7952925 CCATTTCC
1 CCATTTCC
7952933 CCATTTCC
1 CCATTTCC
7952941 C
1 C
7952942 ATTAGACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.00, T:0.36
Consensus pattern (8 bp):
CCATTTCC
Found at i:7953030 original size:20 final size:19
Alignment explanation
Indices: 7952992--7953030 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7952982 AATTTTAAAG
*
7952992 TATTTTTAAAATACTTTTT
1 TATTTTTAAAATACATTTT
*
7953011 TATTTTTAAAATACAATTT
1 TATTTTTAAAATACATTTT
7953030 T
1 T
7953031 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTTTAAAATACATTTT
Found at i:7962688 original size:544 final size:544
Alignment explanation
Indices: 7961768--7962855 Score: 2176
Period size: 544 Copynumber: 2.0 Consensus size: 544
7961758 TTCTTTTATT
7961768 CCAATTCGGTCCCGCGCAAAGTGACGCGTTTTGGAGGGCGAGGATATTTTCTATTTCGATCCCTC
1 CCAATTCGGTCCCGCGCAAAGTGACGCGTTTTGGAGGGCGAGGATATTTTCTATTTCGATCCCTC
7961833 CATTTCATTCGTGTAGTGCAATTCGGTCCCTTACCTCATTTTATTCTCTATTTCTCCCCTAAGAT
66 CATTTCATTCGTGTAGTGCAATTCGGTCCCTTACCTCATTTTATTCTCTATTTCTCCCCTAAGAT
7961898 TTTGTTTCATTTTCAATTTAATACTTTTATGTTGTTATTATTATAATATTATTAAACTAATTAAT
131 TTTGTTTCATTTTCAATTTAATACTTTTATGTTGTTATTATTATAATATTATTAAACTAATTAAT
7961963 TTAATATTATTATTAGATTATATTTCTTTTTCCTTTTTGTGTTTACTTACTTATTATTATCCTTA
196 TTAATATTATTATTAGATTATATTTCTTTTTCCTTTTTGTGTTTACTTACTTATTATTATCCTTA
7962028 TTTCTTTTAGATATTTTTTATTATTATCTTATTATTTATTTATCTAAATCCTTTCAAAGTTTAGA
261 TTTCTTTTAGATATTTTTTATTATTATCTTATTATTTATTTATCTAAATCCTTTCAAAGTTTAGA
7962093 TTATTTATTATTTATATTAATATTATTATCGTTATTATTATTTTTAAAATATTTTACATATTATT
326 TTATTTATTATTTATATTAATATTATTATCGTTATTATTATTTTTAAAATATTTTACATATTATT
7962158 TATTTATTTATTGGTTCTATTGTTTTTTTATTTAGTTTTTACCTATTATTTTTTCTTTTTATTTA
391 TATTTATTTATTGGTTCTATTGTTTTTTTATTTAGTTTTTACCTATTATTTTTTCTTTTTATTTA
7962223 TATAGTTTATTTCTTTATTTTATTTTATTTTCGTCCTTATTATTGTAATTCAAATTACACATTTA
456 TATAGTTTATTTCTTTATTTTATTTTATTTTCGTCCTTATTATTGTAATTCAAATTACACATTTA
7962288 TTATTATTCTGTTATGCATGGTAG
521 TTATTATTCTGTTATGCATGGTAG
7962312 CCAATTCGGTCCCGCGCAAAGTGACGCGTTTTGGAGGGCGAGGATATTTTCTATTTCGATCCCTC
1 CCAATTCGGTCCCGCGCAAAGTGACGCGTTTTGGAGGGCGAGGATATTTTCTATTTCGATCCCTC
7962377 CATTTCATTCGTGTAGTGCAATTCGGTCCCTTACCTCATTTTATTCTCTATTTCTCCCCTAAGAT
66 CATTTCATTCGTGTAGTGCAATTCGGTCCCTTACCTCATTTTATTCTCTATTTCTCCCCTAAGAT
7962442 TTTGTTTCATTTTCAATTTAATACTTTTATGTTGTTATTATTATAATATTATTAAACTAATTAAT
131 TTTGTTTCATTTTCAATTTAATACTTTTATGTTGTTATTATTATAATATTATTAAACTAATTAAT
7962507 TTAATATTATTATTAGATTATATTTCTTTTTCCTTTTTGTGTTTACTTACTTATTATTATCCTTA
196 TTAATATTATTATTAGATTATATTTCTTTTTCCTTTTTGTGTTTACTTACTTATTATTATCCTTA
7962572 TTTCTTTTAGATATTTTTTATTATTATCTTATTATTTATTTATCTAAATCCTTTCAAAGTTTAGA
261 TTTCTTTTAGATATTTTTTATTATTATCTTATTATTTATTTATCTAAATCCTTTCAAAGTTTAGA
7962637 TTATTTATTATTTATATTAATATTATTATCGTTATTATTATTTTTAAAATATTTTACATATTATT
326 TTATTTATTATTTATATTAATATTATTATCGTTATTATTATTTTTAAAATATTTTACATATTATT
7962702 TATTTATTTATTGGTTCTATTGTTTTTTTATTTAGTTTTTACCTATTATTTTTTCTTTTTATTTA
391 TATTTATTTATTGGTTCTATTGTTTTTTTATTTAGTTTTTACCTATTATTTTTTCTTTTTATTTA
7962767 TATAGTTTATTTCTTTATTTTATTTTATTTTCGTCCTTATTATTGTAATTCAAATTACACATTTA
456 TATAGTTTATTTCTTTATTTTATTTTATTTTCGTCCTTATTATTGTAATTCAAATTACACATTTA
7962832 TTATTATTCTGTTATGCATGGTAG
521 TTATTATTCTGTTATGCATGGTAG
7962856 TACCGTGATT
Statistics
Matches: 544, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
544 544 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.55
Consensus pattern (544 bp):
CCAATTCGGTCCCGCGCAAAGTGACGCGTTTTGGAGGGCGAGGATATTTTCTATTTCGATCCCTC
CATTTCATTCGTGTAGTGCAATTCGGTCCCTTACCTCATTTTATTCTCTATTTCTCCCCTAAGAT
TTTGTTTCATTTTCAATTTAATACTTTTATGTTGTTATTATTATAATATTATTAAACTAATTAAT
TTAATATTATTATTAGATTATATTTCTTTTTCCTTTTTGTGTTTACTTACTTATTATTATCCTTA
TTTCTTTTAGATATTTTTTATTATTATCTTATTATTTATTTATCTAAATCCTTTCAAAGTTTAGA
TTATTTATTATTTATATTAATATTATTATCGTTATTATTATTTTTAAAATATTTTACATATTATT
TATTTATTTATTGGTTCTATTGTTTTTTTATTTAGTTTTTACCTATTATTTTTTCTTTTTATTTA
TATAGTTTATTTCTTTATTTTATTTTATTTTCGTCCTTATTATTGTAATTCAAATTACACATTTA
TTATTATTCTGTTATGCATGGTAG
Found at i:7963083 original size:18 final size:18
Alignment explanation
Indices: 7963060--7963097 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7963050 TCTCGAGAAT
*
7963060 TACTAAAAGATTGTGATC
1 TACTAAAAGATCGTGATC
7963078 TACTAAAAGATCGTGATC
1 TACTAAAAGATCGTGATC
7963096 TA
1 TA
7963098 ACTTACGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (18 bp):
TACTAAAAGATCGTGATC
Found at i:7964925 original size:27 final size:27
Alignment explanation
Indices: 7964887--7964943 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
7964877 TGCCAAATTT
*
7964887 TTTGTTAAATTTGTTGGTTTGGTATTC
1 TTTGTTAAATTTGTTGGTTTGATATTC
7964914 TTTGTTAAATTTGTTGGTTTGATATTC
1 TTTGTTAAATTTGTTGGTTTGATATTC
7964941 TTT
1 TTT
7964944 CAAAAGTACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.16, C:0.04, G:0.19, T:0.61
Consensus pattern (27 bp):
TTTGTTAAATTTGTTGGTTTGATATTC
Found at i:7970591 original size:16 final size:16
Alignment explanation
Indices: 7970570--7970602 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7970560 AGAATTCAAG
7970570 TATGAATCTTAATATC
1 TATGAATCTTAATATC
7970586 TATGAATCTTAATATC
1 TATGAATCTTAATATC
7970602 T
1 T
7970603 TTCACTGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.45
Consensus pattern (16 bp):
TATGAATCTTAATATC
Found at i:7973972 original size:430 final size:426
Alignment explanation
Indices: 7972999--7974029 Score: 1289
Period size: 430 Copynumber: 2.4 Consensus size: 426
7972989 CGAGGCAAGG
* *
7972999 AAGTTCAACCAGACTTTTACAGTTAGTGCAATCAAGGAATTGAAGGTTGATGGCTCTTGAAAGAT
1 AAGTTCAACCAAACTTTTACAGTTAGTGCAATCAAGGAATTCAAGGTTGATGGCTCTTGAAAGAT
* * * * * * * * *
7973064 CAGGCATCTTTCTTAAATTACTACAATT-TGAAACGTTAATTACCGTTAAATTATCAAGGTCCTG
66 TAGGTATCTTCCTTAAATTA-TGC-ATTCTG-AACGTAAATTTCCCTTAAATTAACAAGATCCTG
* * * *
7973128 TACAGAAAAAAT-AGCTGTATTACTTTCAAGCATCAGCTACTTGGTAAAAAATGAAAAGGAAATA
128 TACAGAAAAAATAAG-TGTATTACTTTTAAGCATCAACTACTTAGTAAAAAATGAAAAGGAAAGA
* *
7973192 AATAATTATAATACTATAAAAAAATAAAAATTTATATTTGACGTATCGGTGTGAAAATTCACCCA
192 AATAATTATAATACTATAAAAAAATAAAAATTTATATTTAACGTATCGGCGTGAAAATTCACCCA
*
7973257 CAATTAATAAATCAAACAATGTCACTCATCTAAATAAAATAAAATATTTTATATTTATTTTTTAA
257 CAAGTAATAAATCAAACAATGTCACTCATCTAAATAAAATAAAATATTTTATATTTATTTTTTAA
** *
7973322 AAACTTTAAATAAAATGTTATCATATGAATATTTATACATCAAAATATAATTTTTTTTTTCAAAA
322 AAAC-TTAAATAAAATGTTATCATATGAATATTTATACATCAAAATATAATCATATTTTTCAAAA
* *
7973387 AAAAGTATGAAAATACATACCATACAATCATCTCCATTCCA
386 AAAAGTATGAAAACACATACCATACAATCACCTCCATTCCA
* * *
7973428 AAGTTCAACCAAACTTTTACAGTTAGAGCAATCAAGGTATTCAAGGTTGATGGCTATTGAAAGAT
1 AAGTTCAACCAAACTTTTACAGTTAGTGCAATCAAGGAATTCAAGGTTGATGGCTCTTGAAAGAT
* * * * ** * * *
7973493 TAGGTATTTTCCTTAAGCTCACGCACCCATTGAA-GTCAATTTGCCTTAAATTAGCGAA-ATCCT
66 TAGGTATCTTCCTTAA-ATTATGCATTC--TGAACGTAAATTTCCCTTAAATTAAC-AAGATCCT
* * *
7973556 GTACAGAAAAAATAAGTGTATTACTTTTGAGCATCAACTATTTAGTAAAAAATGGAAAGGAAAGA
127 GTACAGAAAAAATAAGTGTATTACTTTTAAGCATCAACTACTTAGTAAAAAATGAAAAGGAAAGA
* * *
7973621 AATAATTATAATACTATACAAAAATAAAAATTTATATTTAATGTATCCGGCGTGAAAATTCTCCC
192 AATAATTATAATACTATAAAAAAATAAAAATTTATATTTAACGTAT-CGGCGTGAAAATTCACCC
* * * *
7973686 ACAAGTAATAAATTAAACGATGTCACTTATCTAAATAAAATAAATTATTTTATATTTATTTTTTA
256 ACAAGTAATAAATCAAACAATGTCACTCATCTAAATAAAATAAAATATTTTATATTTATTTTTTA
* * * *
7973751 AAGAC-TAAATAAAATGTTATTATATGAATATTTGATACATCAAATTATAAATCATATTTTTCGA
321 AAAACTTAAATAAAATGTTATCATATGAATATTT-ATACATCAAAATAT-AATCATATTTTTCAA
* * * * * *
7973815 AGAAAAGTATGAAAACGCATACCGTACGATCACCTTCATTCCC
384 AAAAAAGTATGAAAACACATACCATACAATCACCTCCATTCCA
* * * * *
7973858 AAGTTCAACCAAACTTTGACAGTCAGTGCAATCCAGGGATTCAAGGTTGATGGCTCTCGAAAGAT
1 AAGTTCAACCAAACTTTTACAGTTAGTGCAATCAAGGAATTCAAGGTTGATGGCTCTTGAAAGAT
** * *
7973923 TACATATCTTCCTTAAATTATTGCATTCTGCAACGTAAATTTCCCTTAAATTAACAAGCTCCTGC
66 TAGGTATCTTCCTTAAATTA-TGCATTCTG-AACGTAAATTTCCCTTAAATTAACAAGATCCTGT
* * **
7973988 ATAGAAACAATATTTGTATTACTTTTAAGCATCAACTACTTA
129 ACAGAAAAAATAAGTGTATTACTTTTAAGCATCAACTACTTA
7974030 CTTTAAGCAG
Statistics
Matches: 510, Mismatches: 79, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
428 30 0.06
429 210 0.41
430 268 0.53
431 2 0.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.33
Consensus pattern (426 bp):
AAGTTCAACCAAACTTTTACAGTTAGTGCAATCAAGGAATTCAAGGTTGATGGCTCTTGAAAGAT
TAGGTATCTTCCTTAAATTATGCATTCTGAACGTAAATTTCCCTTAAATTAACAAGATCCTGTAC
AGAAAAAATAAGTGTATTACTTTTAAGCATCAACTACTTAGTAAAAAATGAAAAGGAAAGAAATA
ATTATAATACTATAAAAAAATAAAAATTTATATTTAACGTATCGGCGTGAAAATTCACCCACAAG
TAATAAATCAAACAATGTCACTCATCTAAATAAAATAAAATATTTTATATTTATTTTTTAAAAAC
TTAAATAAAATGTTATCATATGAATATTTATACATCAAAATATAATCATATTTTTCAAAAAAAAG
TATGAAAACACATACCATACAATCACCTCCATTCCA
Found at i:7977622 original size:3 final size:3
Alignment explanation
Indices: 7977614--7977639 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7977604 TCATTAGAGT
7977614 AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AG
7977640 CCATGGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:7985033 original size:218 final size:218
Alignment explanation
Indices: 7984654--7985085 Score: 819
Period size: 218 Copynumber: 2.0 Consensus size: 218
7984644 TCCTTGTATG
*
7984654 GCTAAAGCTCCAATTCAGCAGTGGCATTCCCAAAGATTTGTCATTCCCTAATCTTAAATCAACAC
1 GCTAAAGCTCCAATTCAGCAGTGGCATTCCCAAAGATTTGTCATTCCCTAATCATAAATCAACAC
7984719 AGAAGCAAAGGATATAAGAAAAAACAATCTCACAAATAACCAATCTTTCTAATGAATCAAGATAT
66 AGAAGCAAAGGATATAAGAAAAAACAATCTCACAAATAACCAATCTTTCTAATGAATCAAGATAT
*
7984784 GATTGAAGGAAAATGCAGCAAGCATTGAGATACCAGATGATACCAACGCTGGAACTAAACAATGA
131 GATTGAAGGAAAATGCAGCAAGCACTGAGATACCAGATGATACCAACGCTGGAACTAAACAATGA
7984849 AGCTGAACCGAGTCCACCAAATA
196 AGCTGAACCGAGTCCACCAAATA
*
7984872 GCTAAAGCTCCAATTCAGCAGTGGCATTCCCAAAGATTTGTCATTCCCTAATCATACATCAACAC
1 GCTAAAGCTCCAATTCAGCAGTGGCATTCCCAAAGATTTGTCATTCCCTAATCATAAATCAACAC
7984937 AGAAGCAAAGGATATAAGAAAAAACAATCTCACAAATAACCAATCTTTCTAATGAATCAAGATAT
66 AGAAGCAAAGGATATAAGAAAAAACAATCTCACAAATAACCAATCTTTCTAATGAATCAAGATAT
* *
7985002 GATTGAAGGAAAATGGAGCAAGTACTGAGATACCAGATGATACCAACGCTGGAACTAAACAATGA
131 GATTGAAGGAAAATGCAGCAAGCACTGAGATACCAGATGATACCAACGCTGGAACTAAACAATGA
7985067 AGCTGAACCGAGTCCACCA
196 AGCTGAACCGAGTCCACCA
7985086 TTGGTCCTAT
Statistics
Matches: 209, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
218 209 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (218 bp):
GCTAAAGCTCCAATTCAGCAGTGGCATTCCCAAAGATTTGTCATTCCCTAATCATAAATCAACAC
AGAAGCAAAGGATATAAGAAAAAACAATCTCACAAATAACCAATCTTTCTAATGAATCAAGATAT
GATTGAAGGAAAATGCAGCAAGCACTGAGATACCAGATGATACCAACGCTGGAACTAAACAATGA
AGCTGAACCGAGTCCACCAAATA
Found at i:7985681 original size:21 final size:20
Alignment explanation
Indices: 7985622--7985683 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
7985612 AAAGCATGGC
7985622 AATATGAAAAATGAAATGAA
1 AATATGAAAAATGAAATGAA
* * *
7985642 AAAACTGAAAAATG-TATGAT
1 AATA-TGAAAAATGAAATGAA
*
7985662 AATATGAAAAAATGAGATGAA
1 AATATG-AAAAATGAAATGAA
7985683 A
1 A
7985684 TGAAACCCTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
19 2 0.06
20 17 0.52
21 14 0.42
ACGTcount: A:0.61, C:0.02, G:0.16, T:0.21
Consensus pattern (20 bp):
AATATGAAAAATGAAATGAA
Found at i:7985870 original size:9 final size:9
Alignment explanation
Indices: 7985856--7985905 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
7985846 TTTTCAGTAG
7985856 CATCTGTAC
1 CATCTGTAC
7985865 CATCTGTAC
1 CATCTGTAC
*
7985874 CATCTGTAG
1 CATCTGTAC
*
7985883 CATCTGTAT
1 CATCTGTAC
*
7985892 CATCTGTAG
1 CATCTGTAC
7985901 CATCT
1 CATCT
7985906 CTCTGCATCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (9 bp):
CATCTGTAC
Found at i:7985877 original size:18 final size:18
Alignment explanation
Indices: 7985856--7985905 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
7985846 TTTTCAGTAG
*
7985856 CATCTGTACCATCTGTAC
1 CATCTGTAGCATCTGTAC
*
7985874 CATCTGTAGCATCTGTAT
1 CATCTGTAGCATCTGTAC
7985892 CATCTGTAGCATCT
1 CATCTGTAGCATCT
7985906 CTCTGCATCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (18 bp):
CATCTGTAGCATCTGTAC
Found at i:7985890 original size:27 final size:27
Alignment explanation
Indices: 7985852--7985905 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
7985842 TCTCTTTTCA
7985852 GTAGCATCTGTACCATCTGTACCATCT
1 GTAGCATCTGTACCATCTGTACCATCT
* *
7985879 GTAGCATCTGTATCATCTGTAGCATCT
1 GTAGCATCTGTACCATCTGTACCATCT
7985906 CTCTGCATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAGCATCTGTACCATCTGTACCATCT
Found at i:7988500 original size:12 final size:12
Alignment explanation
Indices: 7988485--7988511 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7988475 ACTTTTATTT
7988485 AAATCAGAACCC
1 AAATCAGAACCC
7988497 AAATCAGAACCC
1 AAATCAGAACCC
7988509 AAA
1 AAA
7988512 ACTTTAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.30, G:0.07, T:0.07
Consensus pattern (12 bp):
AAATCAGAACCC
Found at i:7994029 original size:3 final size:3
Alignment explanation
Indices: 7994021--7994052 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7994011 AAGATGAGAA
7994021 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7994053 GAAGAAGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7994057 original size:3 final size:3
Alignment explanation
Indices: 7994051--7994095 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
7994041 TAATAATAAT
*
7994051 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG GAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
7994096 CAAAAATGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7996877 original size:189 final size:189
Alignment explanation
Indices: 7996557--7997075 Score: 813
Period size: 189 Copynumber: 2.7 Consensus size: 189
7996547 ATCTGAGAGT
* * * * * * * *
7996557 AATTCGACCTTTGGGCAACCACTATGATCCAGATAATGAAGAGATTCCAACTTGATCGATACATG
1 AATTCGACCATTGGGCAACCACTAAGATTCAGTTTACGAAGGGATTCCAACTTGATCGATACATT
* *
7996622 TTTGACCGCTCAGCCACTCATATTTAAGTGCTTAAGATTACATAGAGAGTCGAAAGGCAACGACA
66 TTTGACCGCTGAGCCACTCATATTTAAGTGCTGAAGATTACATAGAGAGTCGAAAGGCAACGACA
7996687 CTTCTTCAATTTGAGTGCCAGATAAGTTTAATTCTATTAAGCTTCCCGGGATTTCTGGA
131 CTTCTTCAATTTGAGTGCCAGATAAGTTTAATTCTATTAAGCTTCCCGGGATTTCTGGA
* *
7996746 AATTCGACCAGTGGGCAACCACTAAGATTCAGTTTACGAAGGGATTCCAATTTGATCGATACATT
1 AATTCGACCATTGGGCAACCACTAAGATTCAGTTTACGAAGGGATTCCAACTTGATCGATACATT
* **
7996811 TTTGACCGCTGAGCTACTCATATTTAAAAGCTGAAGATTACATAGAGAGTCGAAAGGCAACGACA
66 TTTGACCGCTGAGCCACTCATATTTAAGTGCTGAAGATTACATAGAGAGTCGAAAGGCAACGACA
* *
7996876 CTTCTTCAATTTGAGTGCCAGATAAGTTTAATTTTATTAAGCTTCCTGGGATTTCTGGA
131 CTTCTTCAATTTGAGTGCCAGATAAGTTTAATTCTATTAAGCTTCCCGGGATTTCTGGA
* * * *
7996935 AATTTGACCATTGGGCATCCACTAAGATTCAGTTTGCGAAGGGATTCCAACTGGATCGATACATT
1 AATTCGACCATTGGGCAACCACTAAGATTCAGTTTACGAAGGGATTCCAACTTGATCGATACATT
* * * *
7997000 TTTGACCGCTGAGCCGCTCATTTTTAAGTGCTGAAGATTACATAGGGGGTCGAAAGGCAACGACA
66 TTTGACCGCTGAGCCACTCATATTTAAGTGCTGAAGATTACATAGAGAGTCGAAAGGCAACGACA
7997065 CTTCTTCAATT
131 CTTCTTCAATT
7997076 GGGCAACCAC
Statistics
Matches: 300, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
189 300 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (189 bp):
AATTCGACCATTGGGCAACCACTAAGATTCAGTTTACGAAGGGATTCCAACTTGATCGATACATT
TTTGACCGCTGAGCCACTCATATTTAAGTGCTGAAGATTACATAGAGAGTCGAAAGGCAACGACA
CTTCTTCAATTTGAGTGCCAGATAAGTTTAATTCTATTAAGCTTCCCGGGATTTCTGGA
Found at i:8003860 original size:12 final size:12
Alignment explanation
Indices: 8003843--8003871 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
8003833 GTATGGCAAT
8003843 ATGAAAAATAAC
1 ATGAAAAATAAC
8003855 ATGAAAAATAAC
1 ATGAAAAATAAC
8003867 ATGAA
1 ATGAA
8003872 GATTTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.66, C:0.07, G:0.10, T:0.17
Consensus pattern (12 bp):
ATGAAAAATAAC
Found at i:8012402 original size:125 final size:125
Alignment explanation
Indices: 8012180--8012432 Score: 470
Period size: 125 Copynumber: 2.0 Consensus size: 125
8012170 CTTACTTATT
*
8012180 CCTCTCTTTTTTGTATAGCTAAAATTCCAAGCATAATGGCCTTTCCAAAGATCTGCCATTAATTC
1 CCTCTCTTTTTTGAATAGCTAAAATTCCAAGCATAATGGCCTTTCCAAAGATCTGCCATTAATTC
* *
8012245 CCTCTTGACTTTCTATTTCCTCATCTGTTTTTCTTACGCCGATCACTGCCATCTTCATTC
66 CCTCTTGACTCTCTATTTCCTCATCTGTTTTTCTTACACCGATCACTGCCATCTTCATTC
8012305 CCTCTCTTTTTTGAATAGCTAAAATTCCAAGCATAATGGCCTTTCCAAAGATCTGCCATTAATTC
1 CCTCTCTTTTTTGAATAGCTAAAATTCCAAGCATAATGGCCTTTCCAAAGATCTGCCATTAATTC
*
8012370 CCTCTTGACTCTCTGTTTCCTCATCTGTTTTTCTTACACCGATCACTGCCATCTTCATTC
66 CCTCTTGACTCTCTATTTCCTCATCTGTTTTTCTTACACCGATCACTGCCATCTTCATTC
8012430 CCT
1 CCT
8012433 TCATAGTAGC
Statistics
Matches: 124, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 124 1.00
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.40
Consensus pattern (125 bp):
CCTCTCTTTTTTGAATAGCTAAAATTCCAAGCATAATGGCCTTTCCAAAGATCTGCCATTAATTC
CCTCTTGACTCTCTATTTCCTCATCTGTTTTTCTTACACCGATCACTGCCATCTTCATTC
Found at i:8018484 original size:138 final size:137
Alignment explanation
Indices: 8018230--8018517 Score: 441
Period size: 138 Copynumber: 2.0 Consensus size: 137
8018220 TAAGCCTTAA
*
8018230 GTCTATGTATCAGCCTTCTGGTGATGTGGACTTTGATGAAGAAGAAGGTATGAAAGAGTATTAAA
1 GTCTATGTATCAGCCTTCTGGTGATGTGGACTTTGATGAAGAAGAAGGCATGAAAGAGTATTAAA
*
8018295 AGGGAGTTTTGACCAACAAGAAAACTTGTTCCAAACGACGATGATGATGATGGGTGTTAATTTCC
66 AGGGAGTTTTGACCAACAAGAAAACTTATTCCAAACGACGATGA-GATGATGGGTGTTAATTTCC
8018360 AAGTCAAG
130 AAGTCAAG
* *
8018368 GTCTATGTATTAGCCTTCTGGTGATGTGGGCTTTGATGAAGAAGAAGGCATGAAAGAGTATTAAA
1 GTCTATGTATCAGCCTTCTGGTGATGTGGACTTTGATGAAGAAGAAGGCATGAAAGAGTATTAAA
*
8018433 AGGGAGTTTTGACCAACAAGAAAAGTACTTATTCCAAATGACGATGGTGATGATGATGGCTGTGT
66 AGGGAGTTTTGACCAACAAG-AAA--ACTTATTCCAAACGACGA---TGA-GATGATGG--GTGT
8018498 TAATTTCCAAGTCAAG
122 TAATTTCCAAGTCAAG
8018514 GTCT
1 GTCT
8018518 TCCAATGGAA
Statistics
Matches: 137, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
138 82 0.60
139 3 0.02
141 16 0.12
144 12 0.09
146 24 0.18
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (137 bp):
GTCTATGTATCAGCCTTCTGGTGATGTGGACTTTGATGAAGAAGAAGGCATGAAAGAGTATTAAA
AGGGAGTTTTGACCAACAAGAAAACTTATTCCAAACGACGATGAGATGATGGGTGTTAATTTCCA
AGTCAAG
Found at i:8031681 original size:154 final size:154
Alignment explanation
Indices: 8031401--8031709 Score: 582
Period size: 154 Copynumber: 2.0 Consensus size: 154
8031391 TGAGTTTAGC
8031401 TTGGGTTGTGGTATGATTGTAAGAAGAAAAAGTGTAAATGGGAAAGAGATTGAAGGCTTAGGCAA
1 TTGGGTTGTGGTATGATTGTAAGAAGAAAAAGTGTAAATGGGAAAGAGATTGAAGGCTTAGGCAA
* *
8031466 AAGCACAGGCGACGACTTGAGCTTAGCCAATTATCTTTTAGTCAACAAAGGTGGATGGGTAATTA
66 AAGCACAGGCGACGACTTGAGCTTAGCCAATTATCTTTTAGTCAACAAAGGTGGATCGGTAACTA
*
8031531 ATGTGCGTGCGGACCCCATGAAAT
131 ACGTGCGTGCGGACCCCATGAAAT
*
8031555 TTGGGTTGTGGTATTATTGTAAGAAGAAAAAGTGTAAATGGGAAAGAGATTGAAGGCTTAGGCAA
1 TTGGGTTGTGGTATGATTGTAAGAAGAAAAAGTGTAAATGGGAAAGAGATTGAAGGCTTAGGCAA
8031620 AAGCACAGGCGACGACTTGAGCTTAGCCAATTATCTTTTAGTCAACAAAGGTGGATCGGTAACTA
66 AAGCACAGGCGACGACTTGAGCTTAGCCAATTATCTTTTAGTCAACAAAGGTGGATCGGTAACTA
8031685 ACGTGCGTGCGGACCCCATGAAAT
131 ACGTGCGTGCGGACCCCATGAAAT
8031709 T
1 T
8031710 AGCCAATTAG
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
154 151 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (154 bp):
TTGGGTTGTGGTATGATTGTAAGAAGAAAAAGTGTAAATGGGAAAGAGATTGAAGGCTTAGGCAA
AAGCACAGGCGACGACTTGAGCTTAGCCAATTATCTTTTAGTCAACAAAGGTGGATCGGTAACTA
ACGTGCGTGCGGACCCCATGAAAT
Found at i:8034721 original size:18 final size:19
Alignment explanation
Indices: 8034684--8034721 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
8034674 ATTGTTTTGG
8034684 CATGTTTTGAATGTCTTTGAT
1 CATGTTTTGAA--TCTTTGAT
8034705 CATGTTTTGAA-CTTTGA
1 CATGTTTTGAATCTTTGA
8034722 ATGAATGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.11, G:0.18, T:0.50
Consensus pattern (19 bp):
CATGTTTTGAATCTTTGAT
Found at i:8035241 original size:17 final size:17
Alignment explanation
Indices: 8035219--8035253 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8035209 GGTAATACTC
*
8035219 TATATGATATGAAATAT
1 TATATGATAAGAAATAT
8035236 TATATGATAAGAAATAT
1 TATATGATAAGAAATAT
8035253 T
1 T
8035254 TGAAAACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (17 bp):
TATATGATAAGAAATAT
Found at i:8036894 original size:40 final size:40
Alignment explanation
Indices: 8036849--8036925 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
8036839 AGATCAAGAT
* * *
8036849 AAAATCACAGATTATAACACAAACCAATCTCACACATGAG
1 AAAATCACAGATTACAACAAAAACCAAGCTCACACATGAG
*
8036889 AAAATCACAGATTACAACAAAAAGCAAGCTCACACAT
1 AAAATCACAGATTACAACAAAAACCAAGCTCACACAT
8036926 AAGCAGACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.52, C:0.25, G:0.08, T:0.16
Consensus pattern (40 bp):
AAAATCACAGATTACAACAAAAACCAAGCTCACACATGAG
Found at i:8039140 original size:13 final size:13
Alignment explanation
Indices: 8039100--8039141 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
8039090 AAATATGTAC
8039100 AAATATTAAATAA
1 AAATATTAAATAA
8039113 TAAA-ATTAAAT--
1 -AAATATTAAATAA
8039124 AAATATTAAATAA
1 AAATATTAAATAA
8039137 AAATA
1 AAATA
8039142 CGTATATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
10 3 0.12
11 7 0.28
13 12 0.48
14 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATATTAAATAA
Found at i:8039917 original size:18 final size:18
Alignment explanation
Indices: 8039890--8039929 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
8039880 TCTATTATTT
8039890 CTTT-TTTTTAATTTTTA
1 CTTTATTTTTAATTTTTA
8039907 CTTTATTTTTAATTTTTA
1 CTTTATTTTTAATTTTTA
8039925 CTTTA
1 CTTTA
8039930 AAAAGTTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (18 bp):
CTTTATTTTTAATTTTTA
Found at i:8045241 original size:8 final size:8
Alignment explanation
Indices: 8045199--8045243 Score: 60
Period size: 7 Copynumber: 6.0 Consensus size: 8
8045189 TAACAATTGG
8045199 ATTT-AAA
1 ATTTAAAA
8045206 ATTT-AAA
1 ATTTAAAA
8045213 ATTT-AAA
1 ATTTAAAA
8045220 ATTTAAAA
1 ATTTAAAA
8045228 ATTTAAAA
1 ATTTAAAA
*
8045236 ACTTAAAA
1 ATTTAAAA
8045244 TAAAAGTGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
7 18 0.50
8 18 0.50
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (8 bp):
ATTTAAAA
Found at i:8045243 original size:7 final size:7
Alignment explanation
Indices: 8045199--8045235 Score: 65
Period size: 7 Copynumber: 5.1 Consensus size: 7
8045189 TAACAATTGG
8045199 ATTTAAA
1 ATTTAAA
8045206 ATTTAAA
1 ATTTAAA
8045213 ATTTAAA
1 ATTTAAA
8045220 ATTTAAAA
1 ATTT-AAA
8045228 ATTTAAA
1 ATTTAAA
8045235 A
1 A
8045236 ACTTAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTTAAA
Found at i:8048184 original size:2 final size:2
Alignment explanation
Indices: 8048177--8048201 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8048167 GAATTGCTAC
8048177 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8048202 ATTTGAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8055516 original size:17 final size:17
Alignment explanation
Indices: 8055494--8055529 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
8055484 AAAGAAAGAA
8055494 AGAAGAATCTCCACATT
1 AGAAGAATCTCCACATT
8055511 AGAAGAATCTCCACATT
1 AGAAGAATCTCCACATT
8055528 AG
1 AG
8055530 TCCAATCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (17 bp):
AGAAGAATCTCCACATT
Found at i:8057285 original size:83 final size:83
Alignment explanation
Indices: 8057146--8057308 Score: 308
Period size: 83 Copynumber: 2.0 Consensus size: 83
8057136 TAGCAGATGT
8057146 TACTTGGTAGTTTCGTGTGTGATATGCCTGAGATAGAACAAACTGAATTTCCCTAGGGTTTTGTC
1 TACTTGGTAGTTTCGTGTGTGATATGCCTGAGATAGAACAAACTGAATTTCCCTAGGGTTTTGTC
*
8057211 GTATTGAATTTCTAATGG
66 ATATTGAATTTCTAATGG
*
8057229 TACTTGGTAGTTTCGTGTGTGATATGCCTGAGATAGAACAAACTGAATTTCTCTAGGGTTTTGTC
1 TACTTGGTAGTTTCGTGTGTGATATGCCTGAGATAGAACAAACTGAATTTCCCTAGGGTTTTGTC
8057294 ATATTGAATTTCTAA
66 ATATTGAATTTCTAA
8057309 CTTAGAGCCG
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (83 bp):
TACTTGGTAGTTTCGTGTGTGATATGCCTGAGATAGAACAAACTGAATTTCCCTAGGGTTTTGTC
ATATTGAATTTCTAATGG
Found at i:8061034 original size:32 final size:31
Alignment explanation
Indices: 8060955--8061034 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 31
8060945 ATTTGAATAA
*
8060955 GATTAATTTTAAATTGATTTGAATTTGGATTT
1 GATT-ATTTTAAATTTATTTGAATTTGGATTT
* * *
8060987 GAATTCTTTTAAATTTATTTGATTTTGGGGTTT
1 G-ATTATTTTAAATTTATTTGAATTT-GGATTT
8061020 GATTATTTTAAATTT
1 GATTATTTTAAATTT
8061035 TGGGATTAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 32 0.78
33 9 0.22
ACGTcount: A:0.28, C:0.01, G:0.15, T:0.56
Consensus pattern (31 bp):
GATTATTTTAAATTTATTTGAATTTGGATTT
Found at i:8064561 original size:38 final size:40
Alignment explanation
Indices: 8064499--8064587 Score: 119
Period size: 38 Copynumber: 2.2 Consensus size: 40
8064489 TAAAAAGTAT
* * *
8064499 TTATATTAAAAAACACTACCATAAATATAATAAATCTTTTA
1 TTATATT-AAAAACACTACAATAAATATAATAAATATTTAA
8064540 TTATATTAAAAACAC-A-AATAAATATAATAAATATTTAA
1 TTATATTAAAAACACTACAATAAATATAATAAATATTTAA
*
8064578 TTGTATTAAA
1 TTATATTAAA
8064588 TAAAAATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 28 0.64
39 1 0.02
40 8 0.18
41 7 0.16
ACGTcount: A:0.54, C:0.08, G:0.01, T:0.37
Consensus pattern (40 bp):
TTATATTAAAAACACTACAATAAATATAATAAATATTTAA
Found at i:8067765 original size:22 final size:22
Alignment explanation
Indices: 8067740--8067800 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
8067730 ATAAAATAGT
* *
8067740 AGCAATATAATAGCAAAATGGC
1 AGCAAAATAACAGCAAAATGGC
* *
8067762 AGCAAAATAACATCAAAATGAC
1 AGCAAAATAACAGCAAAATGGC
* *
8067784 AAC-AAACAACAGCAAAA
1 AGCAAAATAACAGCAAAA
8067801 CAATGAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 12 0.38
22 20 0.62
ACGTcount: A:0.59, C:0.18, G:0.11, T:0.11
Consensus pattern (22 bp):
AGCAAAATAACAGCAAAATGGC
Found at i:8067799 original size:21 final size:22
Alignment explanation
Indices: 8067751--8067800 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
8067741 GCAATATAAT
* * *
8067751 AGCAAAATGGCAGCAAAATAAC
1 AGCAAAATGACAACAAAACAAC
*
8067773 ATCAAAATGACAAC-AAACAAC
1 AGCAAAATGACAACAAAACAAC
8067794 AGCAAAA
1 AGCAAAA
8067801 CAATGAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.60, C:0.20, G:0.12, T:0.08
Consensus pattern (22 bp):
AGCAAAATGACAACAAAACAAC
Found at i:8072658 original size:13 final size:13
Alignment explanation
Indices: 8072640--8072667 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8072630 GCAATTCACT
8072640 TGTTGGGGACACA
1 TGTTGGGGACACA
8072653 TGTTGGGGACACA
1 TGTTGGGGACACA
8072666 TG
1 TG
8072668 GAGGGTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.39, T:0.25
Consensus pattern (13 bp):
TGTTGGGGACACA
Found at i:8073886 original size:39 final size:39
Alignment explanation
Indices: 8073838--8073916 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
8073828 ATCAATGGCT
*
8073838 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
1 ACAACTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
8073877 ACAACTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
1 ACAACTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
8073916 A
1 A
8073917 TAATCATCTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (39 bp):
ACAACTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
Found at i:8078968 original size:39 final size:39
Alignment explanation
Indices: 8078925--8079003 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
8078915 ATCAACGGCT
8078925 ACAATTAAAAGCTATATACAATTAGAACTCTAAGATTAC
1 ACAATTAAAAGCTATATACAATTAGAACTCTAAGATTAC
* *
8078964 ACAATTAAAAGCTGTATACAATTAGAGCTCTAAGATTAC
1 ACAATTAAAAGCTATATACAATTAGAACTCTAAGATTAC
8079003 A
1 A
8079004 TAATCATCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.28
Consensus pattern (39 bp):
ACAATTAAAAGCTATATACAATTAGAACTCTAAGATTAC
Found at i:8082547 original size:24 final size:23
Alignment explanation
Indices: 8082520--8082574 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
8082510 ATATAATTAT
*
8082520 TTTTTATAAAAAATTACTAATATA
1 TTTTTATAAAAAATT-CAAATATA
* *
8082544 TTTTATATTACAAATTCAAATATA
1 TTTT-TATAAAAAATTCAAATATA
8082568 TGTTTTA
1 T-TTTTA
8082575 CAGTTAGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTTTATAAAAAATTCAAATATA
Found at i:8082558 original size:25 final size:24
Alignment explanation
Indices: 8082513--8082568 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
8082503 TAAATCTATA
*
8082513 TAAT-TATTTTTTATAAAAAATTAC
1 TAATATATTTTATATAAAAAATT-C
* *
8082537 TAATATATTTTATATTACAAATTC
1 TAATATATTTTATATAAAAAATTC
*
8082561 AAATATAT
1 TAATATAT
8082569 GTTTTACAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (24 bp):
TAATATATTTTATATAAAAAATTC
Found at i:8083346 original size:2 final size:2
Alignment explanation
Indices: 8083339--8083363 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8083329 TACTCAAACA
8083339 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8083364 ATGCTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8087050 original size:12 final size:13
Alignment explanation
Indices: 8087033--8087062 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
8087023 ACCATTATCG
8087033 ACATTTATT-ATA
1 ACATTTATTAATA
8087045 ACATTTATTAATA
1 ACATTTATTAATA
8087058 ACATT
1 ACATT
8087063 GAATTGTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (13 bp):
ACATTTATTAATA
Found at i:8087995 original size:31 final size:31
Alignment explanation
Indices: 8087929--8088006 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 31
8087919 GTTTAAACAA
*
8087929 AAAATATAATATTTATTTTTAAGTTATATTTT
1 AAAA-ATAATATTTATATTTAAGTTATATTTT
8087961 AAAAATAATATTTA-ATTTAA-TT-TATTTAT
1 AAAAATAATATTTATATTTAAGTTATATTT-T
*
8087990 GTAAAAT-ATATTTATAT
1 -AAAAATAATATTTATAT
8088007 GTGTAATTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
28 5 0.12
29 10 0.24
30 12 0.29
31 10 0.24
32 4 0.10
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (31 bp):
AAAAATAATATTTATATTTAAGTTATATTTT
Found at i:8097991 original size:21 final size:21
Alignment explanation
Indices: 8097949--8097988 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8097939 TCAATATATA
*
8097949 ATTTTTTATGATTAAATAAAT
1 ATTTATTATGATTAAATAAAT
*
8097970 ATTTATTAT-ATTATATAAA
1 ATTTATTATGATTAAATAAA
8097989 ATAAAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTTATTATGATTAAATAAAT
Found at i:8100303 original size:30 final size:31
Alignment explanation
Indices: 8100248--8100309 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
8100238 AGATACCATA
*
8100248 AGTCCCTATACTTTTTGAAATTTTAAAATTC
1 AGTCCCTATAATTTTTGAAATTTTAAAATTC
* *
8100279 AGTCCCTCTAATTTTT-AGATTTTAAAATTC
1 AGTCCCTATAATTTTTGAAATTTTAAAATTC
8100309 A
1 A
8100310 AGTTCAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.45
Consensus pattern (31 bp):
AGTCCCTATAATTTTTGAAATTTTAAAATTC
Found at i:8102509 original size:85 final size:85
Alignment explanation
Indices: 8102348--8102510 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 85
8102338 AATATATTAC
* *
8102348 ATACCAAATTAGGAAAAAGAGTCAAGTTTAGGTTCCAAATTGGACGCCCAAAAAGATTAAGTACC
1 ATACCAAATTAGGAAAAAGAGTCAAGTTTAGGTACCAAATTGGACGCACAAAAAGATTAAGTACC
* * *
8102413 CACTTATGAAAAATGTCAGG
66 AAATTAAGAAAAATGTCAGG
* * * *
8102433 ATACCAAATTAGGAAAAAGTA-TCAAGTTTGGGTACTAAATTGGAC-CACAAAAATATTTAGATA
1 ATACCAAATTAGGAAAAAG-AGTCAAGTTTAGGTACCAAATTGGACGCACAAAAAGATTAAG-TA
*
8102496 TCAAATTAAGAAAAA
64 CCAAATTAAGAAAAA
8102511 AATATCAAGT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
84 12 0.18
85 53 0.80
86 1 0.02
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (85 bp):
ATACCAAATTAGGAAAAAGAGTCAAGTTTAGGTACCAAATTGGACGCACAAAAAGATTAAGTACC
AAATTAAGAAAAATGTCAGG
Found at i:8106461 original size:156 final size:158
Alignment explanation
Indices: 8106093--8106507 Score: 573
Period size: 156 Copynumber: 2.6 Consensus size: 158
8106083 CCATTTTTAG
* * * * *
8106093 TACAAGTTTACTTGCAAAACAAGAAACCTAATTAGAGTAACCCTAAGCCAATATTTCATCAATCA
1 TACAAGTTTACTTGCAACACAAGAAACCTGATTAAAGTAACCCTAAGCTAAAATTTCATCAATCA
* * * * *
8106158 GACAATGACCAACATGAAAGATAAGAAAAACCCACAATTTTAATCTAAATTCATCAAAGCAACCA
66 GACAATCACCAACATGAAAAATAAG-AAAACCC-CAATTTCAAACAAAATTCATCAAAGCAACCA
** *
8106223 TTGTTTGATATTAAAGAAAAAAAATTTACC
129 TTGTTAAACATTAAAGAAAAAAAATTTACC
* *
8106253 TACAAGTTTACTTGCAACACAAGAAACCTGATTAAAGTAACCCTAAGTTAAAAGTTCATCAATCA
1 TACAAGTTTACTTGCAACACAAGAAACCTGATTAAAGTAACCCTAAGCTAAAATTTCATCAATCA
8106318 GACAATCACCAACATGAAAAATAAGAAAACCCCAATTTCAAACAAAATTCATCAAAGCAACCATT
66 GACAATCACCAACATGAAAAATAAGAAAACCCCAATTTCAAACAAAATTCATCAAAGCAACCATT
* ***
8106383 GTTAAACATTGAAG-AAAATTTTTTACC
131 GTTAAACATTAAAGAAAAAAAATTTACC
* * **
8106410 T-GAAGTTTACTTGCAACACAATAAACCTGATTAAAGTAATTCTAAGCTAAAATTTCATCAATCA
1 TACAAGTTTACTTGCAACACAAGAAACCTGATTAAAGTAACCCTAAGCTAAAATTTCATCAATCA
* *
8106474 AACAATCACCAACATGAAAAATAAGAAAAACCCA
66 GACAATCACCAACATGAAAAATAAGAAAACCCCA
8106508 GAATTTTAAA
Statistics
Matches: 228, Mismatches: 27, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
156 89 0.39
157 11 0.05
158 40 0.18
159 7 0.03
160 81 0.36
ACGTcount: A:0.47, C:0.20, G:0.09, T:0.24
Consensus pattern (158 bp):
TACAAGTTTACTTGCAACACAAGAAACCTGATTAAAGTAACCCTAAGCTAAAATTTCATCAATCA
GACAATCACCAACATGAAAAATAAGAAAACCCCAATTTCAAACAAAATTCATCAAAGCAACCATT
GTTAAACATTAAAGAAAAAAAATTTACC
Found at i:8108042 original size:27 final size:26
Alignment explanation
Indices: 8108012--8108073 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
8108002 TTAAGTAATG
8108012 ATTAAAAATCATTCTTT-TATAAAATAA
1 ATTAAAAAT-ATT-TTTATATAAAATAA
* *
8108039 ATTATATAATATTTTTATATAAAATTA
1 ATTA-AAAATATTTTTATATAAAATAA
8108066 ATTAAAAA
1 ATTAAAAA
8108074 ATCCAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 6 0.20
27 20 0.67
28 4 0.13
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTAAAAATATTTTTATATAAAATAA
Found at i:8109464 original size:70 final size:71
Alignment explanation
Indices: 8109371--8109514 Score: 272
Period size: 70 Copynumber: 2.0 Consensus size: 71
8109361 ATGTAAATTA
*
8109371 TTTGTTTATTTGGATAAACATATAAGTTGAAAAATGTAAATTTTTTATGTAAAATTTAAAATTGT
1 TTTGTTTATTTGGATAAACATATAAGTTGAAAAATGTAAATTTTCTATGTAAAATTTAAAATTGT
8109436 TTAGAT
66 TTAGAT
8109442 TTTGTTTATTT-GATAAACATATAAGTTGAAAAATGTAAATTTTCTATGTAAAATTTAAAATTGT
1 TTTGTTTATTTGGATAAACATATAAGTTGAAAAATGTAAATTTTCTATGTAAAATTTAAAATTGT
8109506 TTAGAT
66 TTAGAT
8109512 TTT
1 TTT
8109515 ATTATATTAA
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
70 61 0.85
71 11 0.15
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (71 bp):
TTTGTTTATTTGGATAAACATATAAGTTGAAAAATGTAAATTTTCTATGTAAAATTTAAAATTGT
TTAGAT
Found at i:8110132 original size:134 final size:134
Alignment explanation
Indices: 8109974--8110236 Score: 391
Period size: 134 Copynumber: 2.0 Consensus size: 134
8109964 CTAATAGTCA
* * *
8109974 TATATATATATATATATATATGGTACAATTCACACATCTTTGATAGAAACAAATCACTGTCACAC
1 TATATATATATATATATATATGGTACAATTCACACACCCTTGATAGAAACAAACCACTGTCACAC
* * ** * * ** *
8110039 ACACATCATAACTTGAATTTAGGACGTGGATTATGAGGGTAGCACCTATGATCAGTAGACTAAAT
66 ACACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGACTAAAT
8110104 GTTC
131 GTTC
* *
8110108 TATATATATATATATATATATGGTATAATTCACATACCCTTGATAGAAACAAACCACTGTCACAC
1 TATATATATATATATATATATGGTACAATTCACACACCCTTGATAGAAACAAACCACTGTCACAC
*
8110173 ACACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGGCTAAA
66 ACACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGACTAAA
8110237 CGTCGGGTAT
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
134 114 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (134 bp):
TATATATATATATATATATATGGTACAATTCACACACCCTTGATAGAAACAAACCACTGTCACAC
ACACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGACTAAAT
GTTC
Found at i:8110248 original size:134 final size:134
Alignment explanation
Indices: 8109975--8110295 Score: 388
Period size: 134 Copynumber: 2.5 Consensus size: 134
8109965 TAATAGTCAT
* * *
8109975 ATATATATATATATATATATGGTACAATTCACACATCTTTGATAGAAACAAATCACTGTCACACA
1 ATATATATATATATATATATGGTACAATTCACACACCCTTGATAGAAACAAACCACTGTCACACA
* * ** * * ** * *
8110040 CACATCATAACTTGAATTTAGGACGTGGATTATGAGGGTAGCACCTATGATCAGTAGACTAAATG
66 CACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGACTAAACG
*
8110105 TTCT
131 TTCG
* *
8110109 ATATATATATATATATATATGGTATAATTCACATACCCTTGATAGAAACAAACCACTGTCACACA
1 ATATATATATATATATATATGGTACAATTCACACACCCTTGATAGAAACAAACCACTGTCACACA
*
8110174 CACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGGCTAAACG
66 CACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGACTAAACG
8110239 -TCG
131 TTCG
** * * *
8110242 -------GGTATATATATATGGTACAATTCTCATACCCTTGATAGAAACAAATCACTGTCA
1 ATATATATATATATATATATGGTACAATTCACACACCCTTGATAGAAACAAACCACTGTCA
8110296 TTACATACAC
Statistics
Matches: 165, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
126 49 0.30
133 2 0.01
134 114 0.69
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (134 bp):
ATATATATATATATATATATGGTACAATTCACACACCCTTGATAGAAACAAACCACTGTCACACA
CACATCATAACTCGAATCTACAACATGAATTATGAGGACAGCACCTATGACCAGTAGACTAAACG
TTCG
Found at i:8111864 original size:3 final size:3
Alignment explanation
Indices: 8111856--8111900 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
8111846 GCAATAAAGT
* *
8111856 GAA GAA GAA GAA GAA GAA GAC GAA GAA GAA GAA GAT G-A GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
8111901 CTAAATAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 1 0.03
3 36 0.97
ACGTcount: A:0.60, C:0.02, G:0.36, T:0.02
Consensus pattern (3 bp):
GAA
Found at i:8124158 original size:19 final size:19
Alignment explanation
Indices: 8124136--8124173 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8124126 TCTAGACAAC
* *
8124136 TTTTATTTTTTTTATAATT
1 TTTTATGTTTTTAATAATT
8124155 TTTTATGTTTTTAATAATT
1 TTTTATGTTTTTAATAATT
8124174 CTAGAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTTATGTTTTTAATAATT
Found at i:8125288 original size:20 final size:22
Alignment explanation
Indices: 8125265--8125304 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8125255 GTATTAAATC
8125265 ATTA-AAATT-TGATGAAAAAA
1 ATTATAAATTATGATGAAAAAA
*
8125285 ATTATGAATTATGATGAAAA
1 ATTATAAATTATGATGAAAA
8125305 TTAATGTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (22 bp):
ATTATAAATTATGATGAAAAAA
Found at i:8125524 original size:60 final size:60
Alignment explanation
Indices: 8125448--8125581 Score: 171
Period size: 60 Copynumber: 2.2 Consensus size: 60
8125438 ATTACATTAG
* * **
8125448 ATATCCCTAAATTAATATCATGAGTCCAAATTGATT-TCCAAACTTTAAAATGTTCTAAAT
1 ATATCCCTAAACTAATATCATCAGTCCAAATTGATTCT-CAAACTTTAAAACATTCTAAAT
* * *
8125508 ATATCTCTAAACTAATATCATCATTCTAAATTGATTCTCAAACTTTAAAACATTCTAAAT
1 ATATCCCTAAACTAATATCATCAGTCCAAATTGATTCTCAAACTTTAAAACATTCTAAAT
* *
8125568 ACATCCCCAAACTA
1 ATATCCCTAAACTA
8125582 TTAAGGTTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 62 0.98
61 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.35
Consensus pattern (60 bp):
ATATCCCTAAACTAATATCATCAGTCCAAATTGATTCTCAAACTTTAAAACATTCTAAAT
Found at i:8127900 original size:4 final size:4
Alignment explanation
Indices: 8127893--8127954 Score: 97
Period size: 4 Copynumber: 15.5 Consensus size: 4
8127883 CATACATGGA
* * *
8127893 TATG TATG TATG TATG TATG TATG TATG TATG CATG CATG CATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
8127941 TATG TATG TATG TA
1 TATG TATG TATG TA
8127955 CCTACCTTAG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (4 bp):
TATG
Found at i:8139371 original size:145 final size:144
Alignment explanation
Indices: 8139088--8139671 Score: 534
Period size: 145 Copynumber: 4.0 Consensus size: 144
8139078 AGTTAATAGT
* * **
8139088 TTTCGGGTTAGTTCATTAGCTCTTGGTTAGACTCTGTAATCAAATGTTTCTCAAAGCAGTAACTC
1 TTTCGGGTTAGTTCAGTAGCTCTTGGTTAGACTGTGTAATCAAATG--T-T----GCTTTAACTC
* * * * * * * * * * *
8139153 AAACACGATCATTCTAGGTTCT-TCGAACAGGACTTGTTTACGTGATAGATTCAATTAATGAACT
59 GAACACGATCGTTCTAGGCTCTAT-GAAAAAGAGTTGTTCACGTGATACATCCAGTTGATGAACT
8139217 TTGTTTGGTGTATGTAATGAAG
123 TTGTTTGGTGTATGTAATGAAG
8139239 TTTCGGGGTTAGTTCAGTAGCTCTTGGTTAGACTGTGTAATCAAATGTTGCTTTAACTCGAACAC
1 TTTC-GGGTTAGTTCAGTAGCTCTTGGTTAGACTGTGTAATCAAATGTTGCTTTAACTCGAACAC
* * ***
8139304 AATCGTTCTAGGCTGTATGAAAAAGAGTTGTTTGTGTGATACATCCAGTTGATGAACTTTGTTTG
65 GATCGTTCTAGGCTCTATGAAAAAGAGTTGTTCACGTGATACATCCAGTTGATGAACTTTGTTTG
8139369 GTGTATGTAATGAAG
130 GTGTATGTAATGAAG
* * * * *
8139384 TTTTCGGGTTAGTTAAGTAGCTTTTGGTTAGACTGTGTTATCAAATGTTTCTTTAACTCGAACAT
1 -TTTCGGGTTAGTTCAGTAGCTCTTGGTTAGACTGTGTAATCAAATGTTGCTTTAACTCGAACAC
* * * * * * *** *
8139449 GGTCATTCTAGGTTCTTTGAACAAGAGTTGTTCACGTGATAGATTTGGTTGATGAACTCTGTTTG
65 GATCGTTCTAGGCTCTATGAAAAAGAGTTGTTCACGTGATACATCCAGTTGATGAACTTTGTTTG
8139514 GTGTATGTAATGAAG
130 GTGTATGTAATGAAG
* * * * *
8139529 TTTTTGGGTTAGTTCAATAGCTC----TTAGACTGTGTAATCAAATTTTGCTTTAACCCAAACAC
1 -TTTCGGGTTAGTTCAGTAGCTCTTGGTTAGACTGTGTAATCAAATGTTGCTTTAACTCGAACAC
* * * * * * * * * ***
8139590 GATTGTTCTAGCCTCTGTGAACACGAGTTTTTCACATAATAGATTTGGTTGATGAAC--TGTTTC
65 GATCGTTCTAGGCTCTATGAAAAAGAGTTGTTCACGTGATACATCCAGTTGATGAACTTTGTTT-
*
8139653 GGTGTATGTAACGAAG
129 GGTGTATGTAATGAAG
8139669 TTT
1 TTT
8139672 TTCGGGTTCT
Statistics
Matches: 370, Mismatches: 59, Indels: 20
0.82 0.13 0.04
Matches are distributed among these distances:
139 8 0.02
140 15 0.04
141 79 0.21
145 217 0.59
146 5 0.01
149 1 0.00
150 1 0.00
151 4 0.01
152 40 0.11
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.39
Consensus pattern (144 bp):
TTTCGGGTTAGTTCAGTAGCTCTTGGTTAGACTGTGTAATCAAATGTTGCTTTAACTCGAACACG
ATCGTTCTAGGCTCTATGAAAAAGAGTTGTTCACGTGATACATCCAGTTGATGAACTTTGTTTGG
TGTATGTAATGAAG
Found at i:8141278 original size:152 final size:150
Alignment explanation
Indices: 8141032--8141322 Score: 433
Period size: 152 Copynumber: 1.9 Consensus size: 150
8141022 GATGGATGGA
* *
8141032 TATGCATTCTCCAAATTAGAATTTGTAAAAAAAAACCCTTGCTTTGTTTGCATGGTACCACATGT
1 TATGCATTCTCCAAATTAGAATTTGT-AAAAAAAACCCTTGCTTTGCTTGCATGATACCACATGT
* *
8141097 TGATGTACTTTCGATGTTTGCCTTGCTTTAAAGTTCCTCTCATCTTCATTTCCATGTATATGTAT
65 TGATGTACTTTCGATGTTTGCCTTGCTTTAAAGTTCCTCTAATCCTCATTTCCATGTATATGTAT
*
8141162 GTATCTATGCATGCATGTATG
130 GGATCTATGCATGCATGTATG
* * *
8141183 TATGCATTCTCCAAATTAGAATTTGT-AAAACATCCCTTGCTTGCTTGCTTGCATGATA-CATCG
1 TATGCATTCTCCAAATTAGAATTTGTAAAAAAAACCCTTGC-T--TTGCTTGCATGATACCA-CA
* *
8141246 TGTTGATGTACTTTTGATGTTTGCCTTGCTTTAAAGTTCCTCTAATCCTCATTTTCATGTATATG
62 TGTTGATGTACTTTCGATGTTTGCCTTGCTTTAAAGTTCCTCTAATCCTCATTTCCATGTATATG
8141311 TATGGATCTATG
127 TATGGATCTATG
8141323 TATGTATGCA
Statistics
Matches: 126, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
149 12 0.10
150 1 0.01
151 28 0.22
152 85 0.67
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.42
Consensus pattern (150 bp):
TATGCATTCTCCAAATTAGAATTTGTAAAAAAAACCCTTGCTTTGCTTGCATGATACCACATGTT
GATGTACTTTCGATGTTTGCCTTGCTTTAAAGTTCCTCTAATCCTCATTTCCATGTATATGTATG
GATCTATGCATGCATGTATG
Found at i:8141479 original size:177 final size:181
Alignment explanation
Indices: 8141183--8141510 Score: 466
Period size: 177 Copynumber: 1.8 Consensus size: 181
8141173 TGCATGTATG
* * * *
8141183 TATGCATTCTCCAAATTAGAATTTGTAAAACATCCCTTGCTTGCTTGCTTGCATGATACATCGTG
1 TATGCATTCTCCAAACTAGAATTTGTAAAACAACCCTTGCTT-CTTGCTTGCATGATACAACATG
*
8141248 TTGATGTACTTTTGATGTTTGCCTTGCTTTAAAGTTCCTCTAATCCTCATTTTCATGTATATGTA
65 TTGATGTACTTTTGATG-TT--CTTGCTTTAAAGTTCCTCTAATCCTCATTTTCATGTACATGTA
* * *
8141313 TGGATCTATGTATGTATGCATGTGCATGTATCATGCATGCATAGATGGATGAGGA
127 TGGATATATGCATGCATGCATGTGCATGTATCATGCATGCATAGATGGATGAGGA
* *
8141368 TATGCATTCTCCAAACTAGAGTTTGTAAAACAACCCTTGC-T-TTGCTTGCGTGATACAACATGT
1 TATGCATTCTCCAAACTAGAATTTGTAAAACAACCCTTGCTTCTTGCTTGCATGATACAACATGT
* * * *
8141431 TGATGTACTTTTGATG-T-TTGCTTTAAAGTTCCTCTCATCTTGATTTTCATGTACATGTATGTA
66 TGATGTACTTTTGATGTTCTTGCTTTAAAGTTCCTCTAATCCTCATTTTCATGTACATGTATGGA
8141494 TATATGCATGCATGCAT
131 TATATGCATGCATGCAT
8141511 ACATTCAACA
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
177 55 0.43
180 1 0.01
182 35 0.27
184 1 0.01
185 37 0.29
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (181 bp):
TATGCATTCTCCAAACTAGAATTTGTAAAACAACCCTTGCTTCTTGCTTGCATGATACAACATGT
TGATGTACTTTTGATGTTCTTGCTTTAAAGTTCCTCTAATCCTCATTTTCATGTACATGTATGGA
TATATGCATGCATGCATGTGCATGTATCATGCATGCATAGATGGATGAGGA
Found at i:8150495 original size:12 final size:12
Alignment explanation
Indices: 8150478--8150516 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8150468 CGAGCACTAG
*
8150478 AAATGACTTAAA
1 AAATGACTCAAA
8150490 AAATGACTCAAA
1 AAATGACTCAAA
*
8150502 AACATGACTGAAA
1 AA-ATGACTCAAA
8150515 AA
1 AA
8150517 CCCAAATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.59, C:0.13, G:0.10, T:0.18
Consensus pattern (12 bp):
AAATGACTCAAA
Found at i:8150508 original size:13 final size:13
Alignment explanation
Indices: 8150480--8150517 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
8150470 AGCACTAGAA
*
8150480 ATGACTTAAAAA-
1 ATGACTCAAAAAC
8150492 ATGACTCAAAAAC
1 ATGACTCAAAAAC
*
8150505 ATGACTGAAAAAC
1 ATGACTCAAAAAC
8150518 CCAAATGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.55, C:0.16, G:0.11, T:0.18
Consensus pattern (13 bp):
ATGACTCAAAAAC
Found at i:8170532 original size:202 final size:201
Alignment explanation
Indices: 8170041--8170657 Score: 799
Period size: 203 Copynumber: 3.0 Consensus size: 201
8170031 AAGCAAAGAG
** * *
8170041 TAAA-ATTGCATTGCAGGCTATACATACAAAACAAATAAACAACAACAAAATATATCGCCTTTCT
1 TAAAGATTGCATTGCAGGCTATACATACAAAACAAATGCACAACAACAAAATACATTGCCTTTCT
* ** * * *
8170105 CGTACCTGAAATCTTCGGGACCTGCTTAACACTCAGCTGGGAATA-TCGTGTGCCTACCAACTAG
66 CGTACCTGAAATCTTCGGGACTTGCTCGACACTCAAC-CGGAATACT-GTGTGCCTACTAACTAG
* * * * *
8170169 AATTGCCCCATATAAACAGTATCCCAAACACGAACAAGGCTCTGCATAGATTATCTTCGATCCAA
129 AATTGCCCAATATAAACAGCATCACAAACACAAACAAGGCTCTGCATAGATTAT-TTCGATCCGA
8170234 AGAACCATA
193 AGAACCATA
* *
8170243 TAAAGATTGCATTGCAGGCTATACATAGAAAACACATGCACAACAACAAAATACATTGCCTTTCT
1 TAAAGATTGCATTGCAGGCTATACATACAAAACAAATGCACAACAACAAAATACATTGCCTTTCT
* * *
8170308 CGAACCTGAAATCTTTGGGACTTGCTCGACACTCAACCGTGAACACTGTGTGCCTACTAACTAGA
66 CGTACCTGAAATCTTCGGGACTTGCTCGACACTCAACCG-GAATACTGTGTGCCTACTAACTAGA
* *
8170373 ATTGCCCAACATAAACAGCATCACAAACACAAACAAGGCTCTGCATAGATTATTTC-AGCCCGAA
130 ATTGCCCAATATAAACAGCATCACAAACACAAACAAGGCTCTGCATAGATTATTTCGA-TCCGAA
8170437 GAACCATA
194 GAACCATA
* * *
8170445 TAAAGATTGCATCGCAGGCTATACATACAAAACAAATGCACAACAACAACATACATTTCCTTTCT
1 TAAAGATTGCATTGCAGGCTATACATACAAAACAAATGCACAACAACAAAATACATTGCCTTTCT
* * * * *
8170510 TGTACCTGAAATCTTCGGGACTTGCTCGACACTCGACCAGGAATACCGTATACCTACTAACTAGA
66 CGTACCTGAAATCTTCGGGACTTGCTCGACACTCAACC-GGAATACTGTGTGCCTACTAACTAGA
* * * * * * *
8170575 ATTGCCTCATATAAAAACAGCATTACGAACACACACAAGGCTCTGCATGGATTATCTCTGATTCG
130 ATTGCC-CA-ATATAAACAGCATCACAAACACAAACAAGGCTCTGCATAGATTATTTC-GATCCG
8170640 AAGAACCATA
192 AAGAACCATA
8170650 TAAAGATT
1 TAAAGATT
8170658 CAACTCGAAT
Statistics
Matches: 362, Mismatches: 44, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
201 1 0.00
202 141 0.39
203 157 0.43
204 42 0.12
205 20 0.06
206 1 0.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (201 bp):
TAAAGATTGCATTGCAGGCTATACATACAAAACAAATGCACAACAACAAAATACATTGCCTTTCT
CGTACCTGAAATCTTCGGGACTTGCTCGACACTCAACCGGAATACTGTGTGCCTACTAACTAGAA
TTGCCCAATATAAACAGCATCACAAACACAAACAAGGCTCTGCATAGATTATTTCGATCCGAAGA
ACCATA
Found at i:8172447 original size:31 final size:31
Alignment explanation
Indices: 8172410--8172516 Score: 214
Period size: 31 Copynumber: 3.5 Consensus size: 31
8172400 AATACATGTA
8172410 CTATTTTGATTATCAACTTGGTCCCTACACT
1 CTATTTTGATTATCAACTTGGTCCCTACACT
8172441 CTATTTTGATTATCAACTTGGTCCCTACACT
1 CTATTTTGATTATCAACTTGGTCCCTACACT
8172472 CTATTTTGATTATCAACTTGGTCCCTACACT
1 CTATTTTGATTATCAACTTGGTCCCTACACT
8172503 CTATTTTGATTATC
1 CTATTTTGATTATC
8172517 GGTTTAGCTC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.44
Consensus pattern (31 bp):
CTATTTTGATTATCAACTTGGTCCCTACACT
Found at i:8179862 original size:24 final size:25
Alignment explanation
Indices: 8179817--8179871 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
8179807 TGAGACTTGT
8179817 AAAAAAATGTACAATTTGTTTTTAA
1 AAAAAAATGTACAATTTGTTTTTAA
8179842 AAAAAAATGTACAATTT-TTTTTAA
1 AAAAAAATGTACAATTTGTTTTTAA
8179866 AAAAAA
1 AAAAAA
8179872 TTGAAAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 13 0.43
25 17 0.57
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (25 bp):
AAAAAAATGTACAATTTGTTTTTAA
Found at i:8180487 original size:21 final size:21
Alignment explanation
Indices: 8180450--8180490 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
8180440 AAAAAATTTC
8180450 AATAAAAAATATTAAATATTAA
1 AATAAAAAATA-TAAATATTAA
8180472 AATAAAACAATA-AAATATT
1 AATAAAA-AATATAAATATT
8180491 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 7 0.39
23 4 0.22
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
AATAAAAAATATAAATATTAA
Found at i:8184752 original size:18 final size:18
Alignment explanation
Indices: 8184729--8184772 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8184719 ATGTCATCAC
*
8184729 TTAAATTTTTTTAAAATT
1 TTAAATTTCTTTAAAATT
*
8184747 TTAAATTTCTTTATAATT
1 TTAAATTTCTTTAAAATT
*
8184765 TTTAATTT
1 TTAAATTT
8184773 GTTTGGTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TTAAATTTCTTTAAAATT
Found at i:8184980 original size:29 final size:29
Alignment explanation
Indices: 8184900--8184979 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
8184890 ATCTCAAAAC
* *
8184900 TATACATGAACTATGGTTTAATGTGCAATTG
1 TATACATGAACTTTGATTT--TGTGCAATTG
* *
8184931 TATGCATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTTTGATTTTGTGCAATTG
*
8184960 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
8184980 GATTCAATCA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 16 0.38
30 10 0.24
31 16 0.38
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTGCAATTG
Found at i:8192736 original size:96 final size:97
Alignment explanation
Indices: 8192554--8192742 Score: 299
Period size: 96 Copynumber: 2.0 Consensus size: 97
8192544 AGTCCCTCCC
* * * *
8192554 CAACCTTTATATAGGAAGATAATGCGCTTCAATGCACTCGAACTCACATCCTGCTGCACTGGCAA
1 CAACCTTTAAATAGGAAGATAATACGCTTCAATGCACTCGAACTCACATCCTCCTGCACTGACAA
8192619 CAATGCCAATTACAATCGAGCTAAGACACATA
66 CAATGCCAATTACAATCGAGCTAAGACACATA
* *
8192651 CAACCTTTAAATAGGAAGATAATACGCTTTAATGCACTC-AACTCACATGCTCCTGCACTGACAA
1 CAACCTTTAAATAGGAAGATAATACGCTTCAATGCACTCGAACTCACATCCTCCTGCACTGACAA
* *
8192715 CAATGCTAATTCCAATCGAGCTAAGACA
66 CAATGCCAATTACAATCGAGCTAAGACA
8192743 GATAAATTAT
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 48 0.57
97 36 0.43
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.23
Consensus pattern (97 bp):
CAACCTTTAAATAGGAAGATAATACGCTTCAATGCACTCGAACTCACATCCTCCTGCACTGACAA
CAATGCCAATTACAATCGAGCTAAGACACATA
Found at i:8195932 original size:31 final size:31
Alignment explanation
Indices: 8195892--8195953 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
8195882 CTTAACAACC
*
8195892 CAATGACTTAAA-GAAAAACTTCTA-AATAGTT
1 CAATAACTTAAACG-AAAACTT-TAGAATAGTT
8195923 CAATAACTTAAACGAAAACTTTAGAATAGTT
1 CAATAACTTAAACGAAAACTTTAGAATAGTT
8195954 TAAGGACTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 2 0.07
31 25 0.89
32 1 0.04
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (31 bp):
CAATAACTTAAACGAAAACTTTAGAATAGTT
Found at i:8214262 original size:21 final size:21
Alignment explanation
Indices: 8214224--8214263 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8214214 TTACTACCCG
* *
8214224 ATAATAGTTAATTTTTTTGGC
1 ATAATAGTTAAATATTTTGGC
*
8214245 ATAATATTTAAATATTTTG
1 ATAATAGTTAAATATTTTG
8214264 TTTTTATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.53
Consensus pattern (21 bp):
ATAATAGTTAAATATTTTGGC
Found at i:8217624 original size:22 final size:20
Alignment explanation
Indices: 8217589--8217628 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8217579 TTCATTAAAT
8217589 AATATTTTTATAATATAAAGA
1 AATATTTTTATAAT-TAAAGA
*
8217610 AATATTTTTGCTAATTAAA
1 AATATTTTT-ATAATTAAA
8217629 TGAGAATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (20 bp):
AATATTTTTATAATTAAAGA
Found at i:8222129 original size:16 final size:17
Alignment explanation
Indices: 8222110--8222150 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
8222100 TTTAATTTAT
8222110 TATAAAATACAAAAT-A
1 TATAAAATACAAAATAA
* *
8222126 TATAAAA-ATAACATAA
1 TATAAAATACAAAATAA
8222142 TATAAAATA
1 TATAAAATA
8222151 TTATAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 5 0.24
16 15 0.71
17 1 0.05
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (17 bp):
TATAAAATACAAAATAA
Found at i:8223786 original size:14 final size:15
Alignment explanation
Indices: 8223757--8223789 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8223747 AAGCTGTACA
*
8223757 TTTTTAATGAATATT
1 TTTTTAAAGAATATT
8223772 TTTTTAAAGAA-ATT
1 TTTTTAAAGAATATT
8223786 TTTT
1 TTTT
8223790 ACTGTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
TTTTTAAAGAATATT
Found at i:8224117 original size:44 final size:43
Alignment explanation
Indices: 8224066--8224284 Score: 160
Period size: 43 Copynumber: 5.1 Consensus size: 43
8224056 ACTAAAAGTA
* * *
8224066 TTAGCGGC-ATTTATTTGAAAAACCGTCGCTAAAGATCATGACCT
1 TTAGCGGCGATTT-TATCAAAAA-CGCCGCTAAAGATCATGACCT
* * *
8224110 TTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCTTGACCT
1 TTAGCGGCGATTTTATCAAAAACGCCGCTAAAGATCATGACCT
* ** * * * *
8224153 TTCGCGGCCTTTTTATCACAAATGCCCCTAAAGATCTTGACCT
1 TTAGCGGCGATTTTATCAAAAACGCCGCTAAAGATCATGACCT
* * *
8224196 TTCGAG-GGCG-CTTTATCCACAGACGCCGCTAAAGATCATGACCT
1 TT--AGCGGCGATTTTAT-CAAAAACGCCGCTAAAGATCATGACCT
* ** * *
8224240 TTAGCGGC-ACTTCTCGCAAAAACGCCGCTAAA-AACATAACCT
1 TTAGCGGCGA-TTTTATCAAAAACGCCGCTAAAGATCATGACCT
8224282 TTA
1 TTA
8224285 AAAAAATTAT
Statistics
Matches: 142, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
42 13 0.09
43 81 0.57
44 44 0.31
45 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
TTAGCGGCGATTTTATCAAAAACGCCGCTAAAGATCATGACCT
Found at i:8224142 original size:43 final size:43
Alignment explanation
Indices: 8224092--8224284 Score: 205
Period size: 43 Copynumber: 4.5 Consensus size: 43
8224082 GAAAAACCGT
8224092 CGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCACAAACGC
1 CGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCACAAACGC
* * *
8224135 CGCTAAAGATCTTGACCTTTCGCGGC-CTTTTTATCACAAATGC
1 CGCTAAAGATCATGACCTTTAGCGGCGC-TTTTATCACAAACGC
* * *
8224178 CCCTAAAGATCTTGACCTTTCGAG-GGCGC-TTTATCCACAGACGC
1 CGCTAAAGATCATGACCTTT--AGCGGCGCTTTTAT-CACAAACGC
* * ** *
8224222 CGCTAAAGATCATGACCTTTAGCGGCACTTCTCGCAAAAACGC
1 CGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCACAAACGC
* *
8224265 CGCTAAA-AACATAACCTTTA
1 CGCTAAAGATCATGACCTTTA
8224285 AAAAAATTAT
Statistics
Matches: 126, Mismatches: 17, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
42 14 0.11
43 80 0.63
44 30 0.24
45 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
CGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCACAAACGC
Found at i:8224271 original size:87 final size:86
Alignment explanation
Indices: 8224083--8224284 Score: 214
Period size: 87 Copynumber: 2.3 Consensus size: 86
8224073 CATTTATTTG
* *
8224083 AAAAACCGTCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCTT
1 AAAAA-CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCAT
* * *
8224148 GACCTTTCGCGGCCTTTTTATC
65 GACCTTTAGCGGCCTTTCTAGC
* * * * *
8224170 ACAAATGCCCCTAAAGATCTTGACCTTTCGAG-GGCGC-TTTATCCACAGACGCCGCTAAAGATC
1 AAAAACGCCGCTAAAGATCATGACCTTT--AGCGGCGCTTTTAT-CACAAACGCCGCTAAAGATC
*
8224233 ATGACCTTTAGCGGCAC-TTCTCGC
63 ATGACCTTTAGCGGC-CTTTCTAGC
* *
8224257 AAAAACGCCGCTAAA-AACATAACCTTTA
1 AAAAACGCCGCTAAAGATCATGACCTTTA
8224285 AAAAAATTAT
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
84 1 0.01
86 33 0.35
87 57 0.61
88 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCATG
ACCTTTAGCGGCCTTTCTAGC
Found at i:8224664 original size:43 final size:43
Alignment explanation
Indices: 8224592--8224682 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
8224582 CACATTGCAA
* * * *
8224592 GGTAATAAAAAATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
* *
8224635 GGTAATAAAAGATATAATACATCTACTTAATCAAGGAAATCTT
1 GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
8224678 -GTAAT
1 GGTAAT
8224683 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (43 bp):
GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
Found at i:8230555 original size:20 final size:20
Alignment explanation
Indices: 8230519--8230556 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8230509 TAAGGAGCAG
*
8230519 TGTTTCAATCAATTTAAAAA
1 TGTTTCAATCAAGTTAAAAA
*
8230539 TGTTTCAATCGAGTTAAA
1 TGTTTCAATCAAGTTAAA
8230557 GAGTTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (20 bp):
TGTTTCAATCAAGTTAAAAA
Found at i:8230604 original size:18 final size:20
Alignment explanation
Indices: 8230581--8230622 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
8230571 TTTGGAACAT
*
8230581 TGTTCAAA-ATTTTCTAAG-
1 TGTTCAAACATTTTATAAGA
8230599 TGTTCAAACATTTTATAAGA
1 TGTTCAAACATTTTATAAGA
8230619 TGTT
1 TGTT
8230623 TGGAAGTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
TGTTCAAACATTTTATAAGA
Found at i:8232098 original size:19 final size:19
Alignment explanation
Indices: 8232074--8232129 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
8232064 AATCACATCT
8232074 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8232093 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
8232112 CCTATGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8232130 TGAAGATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8232271 original size:15 final size:14
Alignment explanation
Indices: 8232240--8232270 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8232230 GGACTTGGAC
*
8232240 TTTGTTTTATTATT
1 TTTGGTTTATTATT
8232254 TTTGGTTTATTATT
1 TTTGGTTTATTATT
8232268 TTT
1 TTT
8232271 TTGTGAGCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.10, T:0.77
Consensus pattern (14 bp):
TTTGGTTTATTATT
Found at i:8232792 original size:131 final size:132
Alignment explanation
Indices: 8232593--8232960 Score: 567
Period size: 131 Copynumber: 2.8 Consensus size: 132
8232583 ATAAGGCTGG
* * *
8232593 TGGCTTAAATCTGCTTCCCTACTACCTCTGGAAGATAAAACTCGCCGTCTTTTATCTGCTCCACT
1 TGGCTTAAATCTGCTTCCCTACTACCTCAGGAAGATAAAATTCGCCGTCTTTGATCTGCTCCACT
* *
8232658 ACTGCTTAGGGAGACAGGATATATAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACT
66 ACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACT
*
8232723 GC
131 GA
* * * * *
8232725 TGGCTTAAATCTGCTT-CCTACTATCTCAGGAAGATAAGATTTGCCGTCTTCGATCTGCTCCATT
1 TGGCTTAAATCTGCTTCCCTACTACCTCAGGAAGATAAAATTCGCCGTCTTTGATCTGCTCCACT
* *
8232789 ACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCATTGCTGCTCAGGGAGATAGGACT
66 ACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACT
8232854 GA
131 GA
* * ** *
8232856 TGACTTAAATTTGCTTCCCTACTACCTTGGGAAGATAATATTCGCCGTCTTTGATCTGCTCCACT
1 TGGCTTAAATCTGCTTCCCTACTACCTCAGGAAGATAAAATTCGCCGTCTTTGATCTGCTCCACT
8232921 ACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTC
66 ACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTC
8232961 TGTAACACCC
Statistics
Matches: 213, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 116 0.54
132 97 0.46
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (132 bp):
TGGCTTAAATCTGCTTCCCTACTACCTCAGGAAGATAAAATTCGCCGTCTTTGATCTGCTCCACT
ACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACT
GA
Found at i:8233535 original size:21 final size:22
Alignment explanation
Indices: 8233496--8233536 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8233486 CAGTTTCTCA
*
8233496 ATCTAATATATATATTTCAATC
1 ATCTAATATATATAATTCAATC
8233518 ATCTAATA-ATATAATTCAA
1 ATCTAATATATATAATTCAA
8233537 GTTACACGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (22 bp):
ATCTAATATATATAATTCAATC
Found at i:8235781 original size:89 final size:89
Alignment explanation
Indices: 8235494--8235771 Score: 362
Period size: 89 Copynumber: 3.1 Consensus size: 89
8235484 GTATTACATA
* * * ** * * *
8235494 CTCCACTGCAAACTC-AGAGAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTACAAGAA
1 CTCCGCTGCAAACTCAAG-GAGGTAAGGCTGGTGTCTTCGATCTGCTTTGCTGCCAATATAGGAA
* * *
8235558 GACAAGATCTGTTGTTTTCAGTCTG
65 GACAAGATCTGCTATCTTCAGTCTG
* * * * *
8235583 CTCCGTTGCAAACTCAGGGAGGTAAGACTAGTGTCTTCGATCTG-TTTCGCTGCCAATATAGAAA
1 CTCCGCTGCAAACTCAAGGAGGTAAGGCTGGTGTCTTCGATCTGCTTT-GCTGCCAATATAGGAA
*
8235647 GACAAGATCTACTATCTTCAGTCTG
65 GACAAGATCTGCTATCTTCAGTCTG
8235672 CTCCGCTGCAAACTCAAGGAGGTAAGGCTGGTGTCTTCGATCTGCTTTGCTGCCAATATAGGAAG
1 CTCCGCTGCAAACTCAAGGAGGTAAGGCTGGTGTCTTCGATCTGCTTTGCTGCCAATATAGGAAG
*
8235737 ACAAGATCTGCTATCGTCAGTCTG
66 ACAAGATCTGCTATCTTCAGTCTG
8235761 CTCCGCTGCAA
1 CTCCGCTGCAA
8235772 CTTTAAGGAG
Statistics
Matches: 162, Mismatches: 24, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
88 2 0.01
89 156 0.96
90 4 0.02
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (89 bp):
CTCCGCTGCAAACTCAAGGAGGTAAGGCTGGTGTCTTCGATCTGCTTTGCTGCCAATATAGGAAG
ACAAGATCTGCTATCTTCAGTCTG
Done.