Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 43 of 131
Found at i:14261492 original size:85 final size:86
Alignment explanation
Indices: 14261289--14261556 Score: 328
Period size: 85 Copynumber: 3.1 Consensus size: 86
14261279 TGCTAGAAAT
* * *
14261289 GCCGCTAAAGGT-TTGTTCTTTAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTCATGGT-TT
1 GCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTCTTGGTCTT
*
14261352 ATAGCGGCGTTTGTGATAAAAGC
65 -TAGCGGCGTTTGTGAGAAAAGC
*
14261375 GCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGT-GGAAATAGCGCCGCTAAAGGTCTTGGTCTT
1 GCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAA-AGCGCCGCTAAAGGTCTTGGTCTT
* **
14261439 TAACGGCGTTTGTG-GGGAAGC
65 TAGCGGCGTTTGTGAGAAAAGC
* * * *
14261460 GCCGTTCAAGGTCGTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCTTGGTCTTT
1 GCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTT
* * * *
14261525 AGCGGCATTTCTAGAAAAAAAC
66 AGCGGCGTTTGT-GAGAAAAGC
14261547 GCCGCTAAAG
1 GCCGCTAAAG
14261557 TTAGCGACGC
Statistics
Matches: 154, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
85 70 0.45
86 53 0.34
87 31 0.20
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (86 bp):
GCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTT
AGCGGCGTTTGTGAGAAAAGC
Found at i:14263926 original size:192 final size:188
Alignment explanation
Indices: 14263616--14263994 Score: 652
Period size: 192 Copynumber: 2.0 Consensus size: 188
14263606 TTTAGTTGAG
14263616 GTTCATTGAACCTAGTCATGGTTGACCAAGCTCTCACCACCCCTTTGTCGTCCCTACCTCTCTCT
1 GTTCATTGAACCTAGTCATGGTTGACCAAGCTCTCACCACCCCTTTGTCGTCCCTACCTCTCTCT
*
14263681 TACTCCCATTTTCTTTCTTTTTTTCATCAATTTTTTCTCCATTTTGCAAAAAAAAAAAAAACACC
66 TACTCCCATTTTCTTTC-TTTTTTCATCAATTTTCTCTCCATTTTGC---AAAAAAAAAAACACC
14263746 ACCATTTCTTTTAACTTTTGCCCCTTTCCTCCACCGTGACTGAATCCTTCACCACTGACCAC
127 ACCATTTCTTTTAACTTTTGCCCCTTTCCTCCACCGTGACTGAATCCTTCACCACTGACCAC
14263808 GTTCATTGAACCTAGTCATGGTTGACCAAGCTCTCACCACCCCTTTGTCGTCCCTACCTCTCTCT
1 GTTCATTGAACCTAGTCATGGTTGACCAAGCTCTCACCACCCCTTTGTCGTCCCTACCTCTCTCT
* * *
14263873 TACTCCCATTTTCTTTC-TTTTTCATCCATTTTCTCTCCATTTTGCAAAAAAAAAACCACCACCC
66 TACTCCCATTTTCTTTCTTTTTTCATCAATTTTCTCTCCATTTTGCAAAAAAAAAAACACCACCA
* * *
14263937 TTTCTTTTAACTTTTTCCCTTTTCTTCCACCGTGACTGAATCCTTCACCACTGACCAC
131 TTTCTTTTAACTTTTGCCCCTTTCCTCCACCGTGACTGAATCCTTCACCACTGACCAC
14263995 TGTGCATCGT
Statistics
Matches: 180, Mismatches: 7, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
187 72 0.40
190 26 0.14
192 82 0.46
ACGTcount: A:0.22, C:0.34, G:0.08, T:0.37
Consensus pattern (188 bp):
GTTCATTGAACCTAGTCATGGTTGACCAAGCTCTCACCACCCCTTTGTCGTCCCTACCTCTCTCT
TACTCCCATTTTCTTTCTTTTTTCATCAATTTTCTCTCCATTTTGCAAAAAAAAAAACACCACCA
TTTCTTTTAACTTTTGCCCCTTTCCTCCACCGTGACTGAATCCTTCACCACTGACCAC
Found at i:14265276 original size:49 final size:50
Alignment explanation
Indices: 14265218--14265350 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 50
14265208 AAGCAATGAC
* *
14265218 AGTAT-TTGCAAATCAGTGGTGGCTTGTCCACAAAA-T-TTATCAGTGGT
1 AGTATATTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTATCACTGAT
* *
14265265 AGTATACTTGCATATTAGTGGTGGCTTGTCCACAAAAGTGTTATCACTGAT
1 AGTATA-TTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTATCACTGAT
* *
14265316 AGTTTATCTGCAAATCAGTGGTGGATTGTCCACAA
1 AGTATAT-TGCAAATCAGTGGTGGCTTGTCCACAA
14265351 TGTTGTTTAG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
47 5 0.07
49 28 0.38
50 2 0.03
51 38 0.52
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.34
Consensus pattern (50 bp):
AGTATATTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTATCACTGAT
Found at i:14265446 original size:19 final size:20
Alignment explanation
Indices: 14265416--14265455 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
14265406 AGGTAGGACC
*
14265416 GTTTTCACAAAATATGTATT
1 GTTTTCACAAAATATGCATT
14265436 GTTTT-ACAAAATATGCATT
1 GTTTTCACAAAATATGCATT
14265455 G
1 G
14265456 ACATGATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (20 bp):
GTTTTCACAAAATATGCATT
Found at i:14267110 original size:16 final size:16
Alignment explanation
Indices: 14267089--14267119 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14267079 ACCTTTTTTT
14267089 TTATAAATGTTATATA
1 TTATAAATGTTATATA
*
14267105 TTATAAATTTTATAT
1 TTATAAATGTTATAT
14267120 TAACTTTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TTATAAATGTTATATA
Found at i:14269127 original size:994 final size:994
Alignment explanation
Indices: 14267200--14269188 Score: 3978
Period size: 994 Copynumber: 2.0 Consensus size: 994
14267190 TATATAATAT
14267200 TTTATAATTAAAGCTACAAATTATTTAGACTGTAAACCCAAATATTATAAAGTCAATGTTAATTC
1 TTTATAATTAAAGCTACAAATTATTTAGACTGTAAACCCAAATATTATAAAGTCAATGTTAATTC
14267265 TGCAAATAAAAAAAGGTTTTGTTGCATCATATTGCAGTATATGATACTATTTGAGAGAATTAAAA
66 TGCAAATAAAAAAAGGTTTTGTTGCATCATATTGCAGTATATGATACTATTTGAGAGAATTAAAA
14267330 AATGAAAAGAAATGAAAATAAGAGATGCAAATTAAAAATAATAATTAATCAATAGTAAAACCCTA
131 AATGAAAAGAAATGAAAATAAGAGATGCAAATTAAAAATAATAATTAATCAATAGTAAAACCCTA
14267395 TGATTATAATTTTATCCAATGTGTTAGCTAATTGATCCATCTCTACACAATTTATCCTAATAGAG
196 TGATTATAATTTTATCCAATGTGTTAGCTAATTGATCCATCTCTACACAATTTATCCTAATAGAG
14267460 CTAATTATTAACCTGGAAAACTAAAATTCCCTTAATTCTTTTCCAAATAATTAAAGAAATAATTT
261 CTAATTATTAACCTGGAAAACTAAAATTCCCTTAATTCTTTTCCAAATAATTAAAGAAATAATTT
14267525 AATCTAACTATTGAGCTATATTCCTATGTCAATAATTTAAACCCTTAGCGAAGGTCATCCCATGT
326 AATCTAACTATTGAGCTATATTCCTATGTCAATAATTTAAACCCTTAGCGAAGGTCATCCCATGT
14267590 TTTTAAATATTTTCTGTTACAATAAAAATAAGGAAGTGTGTAATCTAGTGGTTTAATAACTATGT
391 TTTTAAATATTTTCTGTTACAATAAAAATAAGGAAGTGTGTAATCTAGTGGTTTAATAACTATGT
14267655 TTTATATTGATTAAAGTCATTTTTATTTAAATTATGTTTGATGAGGATACTTTAAGTGTCCATTA
456 TTTATATTGATTAAAGTCATTTTTATTTAAATTATGTTTGATGAGGATACTTTAAGTGTCCATTA
14267720 AGAGAGATAAAACCCATCGATATGGACTATGTCAAGTAAGTGATTCCAAACTATATATGTTGTGA
521 AGAGAGATAAAACCCATCGATATGGACTATGTCAAGTAAGTGATTCCAAACTATATATGTTGTGA
14267785 AAAGCATGTTGTGTGATCTTAATGATTATTATTGATATAAAATGTATGAAAATCTCATTCTCATG
586 AAAGCATGTTGTGTGATCTTAATGATTATTATTGATATAAAATGTATGAAAATCTCATTCTCATG
14267850 TTATGTGATCTTATGGCATATGTGATTTTCGCATGATTTATAAAATGTGAAATATTGATATAAAG
651 TTATGTGATCTTATGGCATATGTGATTTTCGCATGATTTATAAAATGTGAAATATTGATATAAAG
14267915 TGTATATATATGTGATTTGCATGTTAAGCATGCTTATGTGATTTTAAGTGAAAAGTGATTTTGTG
716 TGTATATATATGTGATTTGCATGTTAAGCATGCTTATGTGATTTTAAGTGAAAAGTGATTTTGTG
14267980 GCCATATCACATGCATGGGGTGGGATATGTGAAAGGTGGAAGAATGTGGTAGTTTATTTGCAAAA
781 GCCATATCACATGCATGGGGTGGGATATGTGAAAGGTGGAAGAATGTGGTAGTTTATTTGCAAAA
14268045 GTGGTGGCTTGTCCACAATTTGATTTTGTGGTAGTTTATCTACATTACCGTGACATTGTTCACAA
846 GTGGTGGCTTGTCCACAATTTGATTTTGTGGTAGTTTATCTACATTACCGTGACATTGTTCACAA
14268110 CTTGGTGTGCTATCGGATGGACGAGTTCGGAGGAACTCGATTGTAGTGTGTAGTGGAGATGGGTA
911 CTTGGTGTGCTATCGGATGGACGAGTTCGGAGGAACTCGATTGTAGTGTGTAGTGGAGATGGGTA
14268175 GGACCGTTTTCATAAAATC
976 GGACCGTTTTCATAAAATC
14268194 TTTATAATTAAAGCTACAAATTATTTAGACTGTAAACCCAAATATTATAAAGTCAATGTTAATTC
1 TTTATAATTAAAGCTACAAATTATTTAGACTGTAAACCCAAATATTATAAAGTCAATGTTAATTC
14268259 TGCAAATAAAAAAAGGTTTTGTTGCATCATATTGCAGTATATGATACTATTTGAGAGAATTAAAA
66 TGCAAATAAAAAAAGGTTTTGTTGCATCATATTGCAGTATATGATACTATTTGAGAGAATTAAAA
14268324 AATGAAAAGAAATGAAAATAAGAGATGCAAATTAAAAATAATAATTAATCAATAGTAAAACCCTA
131 AATGAAAAGAAATGAAAATAAGAGATGCAAATTAAAAATAATAATTAATCAATAGTAAAACCCTA
14268389 TGATTATAATTTTATCCAATGTGTTAGCTAATTGATCCATCTCTACACAATTTATCCTAATAGAG
196 TGATTATAATTTTATCCAATGTGTTAGCTAATTGATCCATCTCTACACAATTTATCCTAATAGAG
14268454 CTAATTATTAACCTGGAAAACTAAAATTCCCTTAATTCTTTTCCAAATAATTAAAGAAATAATTT
261 CTAATTATTAACCTGGAAAACTAAAATTCCCTTAATTCTTTTCCAAATAATTAAAGAAATAATTT
14268519 AATCTAACTATTGAGCTATATTCCTATGTCAATAATTTAAACCCTTAGCGAAGGTCATCCCATGT
326 AATCTAACTATTGAGCTATATTCCTATGTCAATAATTTAAACCCTTAGCGAAGGTCATCCCATGT
14268584 TTTTAAATATTTTCTGTTACAATAAAAATAAGGAAGTGTGTAATCTAGTGGTTTAATAACTATGT
391 TTTTAAATATTTTCTGTTACAATAAAAATAAGGAAGTGTGTAATCTAGTGGTTTAATAACTATGT
14268649 TTTATATTGATTAAAGTCATTTTTATTTAAATTATGTTTGATGAGGATACTTTAAGTGTCCATTA
456 TTTATATTGATTAAAGTCATTTTTATTTAAATTATGTTTGATGAGGATACTTTAAGTGTCCATTA
14268714 AGAGAGATAAAACCCATCGATATGGACTATGTCAAGTAAGTGATTCCAAACTATATATGTTGTGA
521 AGAGAGATAAAACCCATCGATATGGACTATGTCAAGTAAGTGATTCCAAACTATATATGTTGTGA
14268779 AAAGCATGTTGTGTGATCTTAATGATTATTATTGATATAAAATGTATGAAAATCTCATTCTCATG
586 AAAGCATGTTGTGTGATCTTAATGATTATTATTGATATAAAATGTATGAAAATCTCATTCTCATG
14268844 TTATGTGATCTTATGGCATATGTGATTTTCGCATGATTTATAAAATGTGAAATATTGATATAAAG
651 TTATGTGATCTTATGGCATATGTGATTTTCGCATGATTTATAAAATGTGAAATATTGATATAAAG
14268909 TGTATATATATGTGATTTGCATGTTAAGCATGCTTATGTGATTTTAAGTGAAAAGTGATTTTGTG
716 TGTATATATATGTGATTTGCATGTTAAGCATGCTTATGTGATTTTAAGTGAAAAGTGATTTTGTG
14268974 GCCATATCACATGCATGGGGTGGGATATGTGAAAGGTGGAAGAATGTGGTAGTTTATTTGCAAAA
781 GCCATATCACATGCATGGGGTGGGATATGTGAAAGGTGGAAGAATGTGGTAGTTTATTTGCAAAA
14269039 GTGGTGGCTTGTCCACAATTTGATTTTGTGGTAGTTTATCTACATTACCGTGACATTGTTCACAA
846 GTGGTGGCTTGTCCACAATTTGATTTTGTGGTAGTTTATCTACATTACCGTGACATTGTTCACAA
14269104 CTTGGTGTGCTATCGGATGGACGAGTTCGGAGGAACTCGATTGTAGTGTGTAGTGGAGATGGGTA
911 CTTGGTGTGCTATCGGATGGACGAGTTCGGAGGAACTCGATTGTAGTGTGTAGTGGAGATGGGTA
14269169 GGACCGTTTTCATAAAATC
976 GGACCGTTTTCATAAAATC
14269188 T
1 T
14269189 GCATCATTTT
Statistics
Matches: 995, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
994 995 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (994 bp):
TTTATAATTAAAGCTACAAATTATTTAGACTGTAAACCCAAATATTATAAAGTCAATGTTAATTC
TGCAAATAAAAAAAGGTTTTGTTGCATCATATTGCAGTATATGATACTATTTGAGAGAATTAAAA
AATGAAAAGAAATGAAAATAAGAGATGCAAATTAAAAATAATAATTAATCAATAGTAAAACCCTA
TGATTATAATTTTATCCAATGTGTTAGCTAATTGATCCATCTCTACACAATTTATCCTAATAGAG
CTAATTATTAACCTGGAAAACTAAAATTCCCTTAATTCTTTTCCAAATAATTAAAGAAATAATTT
AATCTAACTATTGAGCTATATTCCTATGTCAATAATTTAAACCCTTAGCGAAGGTCATCCCATGT
TTTTAAATATTTTCTGTTACAATAAAAATAAGGAAGTGTGTAATCTAGTGGTTTAATAACTATGT
TTTATATTGATTAAAGTCATTTTTATTTAAATTATGTTTGATGAGGATACTTTAAGTGTCCATTA
AGAGAGATAAAACCCATCGATATGGACTATGTCAAGTAAGTGATTCCAAACTATATATGTTGTGA
AAAGCATGTTGTGTGATCTTAATGATTATTATTGATATAAAATGTATGAAAATCTCATTCTCATG
TTATGTGATCTTATGGCATATGTGATTTTCGCATGATTTATAAAATGTGAAATATTGATATAAAG
TGTATATATATGTGATTTGCATGTTAAGCATGCTTATGTGATTTTAAGTGAAAAGTGATTTTGTG
GCCATATCACATGCATGGGGTGGGATATGTGAAAGGTGGAAGAATGTGGTAGTTTATTTGCAAAA
GTGGTGGCTTGTCCACAATTTGATTTTGTGGTAGTTTATCTACATTACCGTGACATTGTTCACAA
CTTGGTGTGCTATCGGATGGACGAGTTCGGAGGAACTCGATTGTAGTGTGTAGTGGAGATGGGTA
GGACCGTTTTCATAAAATC
Found at i:14274503 original size:38 final size:38
Alignment explanation
Indices: 14274452--14274607 Score: 312
Period size: 38 Copynumber: 4.1 Consensus size: 38
14274442 GAGCTTCCTA
14274452 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
1 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
14274490 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
1 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
14274528 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
1 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
14274566 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
1 TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
14274604 TAAT
1 TAAT
14274608 GCTTAGTAAG
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 118 1.00
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.24
Consensus pattern (38 bp):
TAATCTATAAAACATAGGAAAGAAACTATGTAAGCAAT
Found at i:14280161 original size:25 final size:25
Alignment explanation
Indices: 14280136--14280242 Score: 128
Period size: 25 Copynumber: 4.3 Consensus size: 25
14280126 CAGCTTTTAT
* * * *
14280136 GAGCTTACCGATACTCAGCTCGTAT
1 GAGCTTACCGATATTCAGCTTGGAG
*
14280161 GTGCTTACC-ATTATTCAGCTTGGAG
1 GAGCTTACCGA-TATTCAGCTTGGAG
*
14280186 GAGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTACCGATATTCAGCTTGGAG
14280211 GAGCTTACC-ATTATTCAGCTTGGAG
1 GAGCTTACCGA-TATTCAGCTTGGAG
14280236 GAGCTTA
1 GAGCTTA
14280243 TTGTTTACAG
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
24 1 0.01
25 70 0.99
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (25 bp):
GAGCTTACCGATATTCAGCTTGGAG
Found at i:14280190 original size:50 final size:50
Alignment explanation
Indices: 14280136--14280242 Score: 160
Period size: 50 Copynumber: 2.1 Consensus size: 50
14280126 CAGCTTTTAT
* * *
14280136 GAGCTTACCGATACTCAGCTCGTATGTGCTTACCATTATTCAGCTTGGAG
1 GAGCTTACCGATACTCAGCTCGGAGGAGCTTACCATTATTCAGCTTGGAG
* * *
14280186 GAGCTTACCGTTATTCAGCTTGGAGGAGCTTACCATTATTCAGCTTGGAG
1 GAGCTTACCGATACTCAGCTCGGAGGAGCTTACCATTATTCAGCTTGGAG
14280236 GAGCTTA
1 GAGCTTA
14280243 TTGTTTACAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (50 bp):
GAGCTTACCGATACTCAGCTCGGAGGAGCTTACCATTATTCAGCTTGGAG
Found at i:14280452 original size:26 final size:26
Alignment explanation
Indices: 14280405--14280458 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
14280395 TACAGGTATT
*
14280405 TACATGAGATATATGAAAATGATTTG
1 TACATGAGATATATGAAAATGATGTG
* *
14280431 TACATGATATATA-GATACATGATGTG
1 TACATGAGATATATGA-AAATGATGTG
14280457 TA
1 TA
14280459 AATTATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.35
Consensus pattern (26 bp):
TACATGAGATATATGAAAATGATGTG
Found at i:14283014 original size:21 final size:21
Alignment explanation
Indices: 14282988--14283034 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
14282978 TTAGGAACAT
*
14282988 GAGGTGATCAGCCTCGAGGTG
1 GAGGTGAACAGCCTCGAGGTG
* **
14283009 GAGGTGAACGGCCTCGTTGTG
1 GAGGTGAACAGCCTCGAGGTG
14283030 GAGGT
1 GAGGT
14283035 AAACGTCTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.17, G:0.45, T:0.21
Consensus pattern (21 bp):
GAGGTGAACAGCCTCGAGGTG
Found at i:14283049 original size:21 final size:21
Alignment explanation
Indices: 14283006--14283049 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
14282996 CAGCCTCGAG
* *
14283006 GTGGAGGTGAACGGCCTCGTT
1 GTGGAGGTAAACGGCCTCATT
* *
14283027 GTGGAGGTAAACGTCTTCATT
1 GTGGAGGTAAACGGCCTCATT
14283048 GT
1 GT
14283050 CATTGTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.30
Consensus pattern (21 bp):
GTGGAGGTAAACGGCCTCATT
Found at i:14285497 original size:25 final size:24
Alignment explanation
Indices: 14285462--14285522 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
14285452 TGATATGTTT
* *
14285462 ATAA-ATCAATATATTCACATTATAA
1 ATAACATCAATACATT-AAATT-TAA
14285487 ATAACAT-AATAACATTAAATTTAA
1 ATAACATCAAT-ACATTAAATTTAA
14285511 ATAACATCAATA
1 ATAACATCAATA
14285523 AGCTAACCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
24 11 0.35
25 14 0.45
26 6 0.19
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAACATCAATACATTAAATTTAA
Found at i:14288447 original size:20 final size:20
Alignment explanation
Indices: 14288422--14288460 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14288412 CGTAAAATGA
*
14288422 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
14288442 TTTCTGTAAAATGATTTAC
1 TTTCTGGAAAATGATTTAC
14288461 AGAAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:14288466 original size:34 final size:34
Alignment explanation
Indices: 14288407--14288472 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
14288397 CAGTAAAATA
* *
14288407 TTTTCCGTAAAATGATTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTCTAGAAAATATTTTAC
*
14288441 TTTTCTGTAAAATGATTTAC-AGAAAATATTTT
1 TTTTCCGTAAAATGATTT-CTAGAAAATATTTT
14288473 CTAGTGTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 27 0.96
35 1 0.04
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.45
Consensus pattern (34 bp):
TTTTCCGTAAAATGATTTCTAGAAAATATTTTAC
Found at i:14289009 original size:32 final size:33
Alignment explanation
Indices: 14288956--14289020 Score: 123
Period size: 32 Copynumber: 2.0 Consensus size: 33
14288946 AAGTAGCAAC
14288956 TACATCATGGCTAAAGATCCAGAGCAGCGTGTT
1 TACATCATGGCTAAAGATCCAGAGCAGCGTGTT
14288989 TACATCATGGC-AAAGATCCAGAGCAGCGTGTT
1 TACATCATGGCTAAAGATCCAGAGCAGCGTGTT
14289021 GCGCACATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 21 0.66
33 11 0.34
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (33 bp):
TACATCATGGCTAAAGATCCAGAGCAGCGTGTT
Found at i:14289116 original size:5 final size:5
Alignment explanation
Indices: 14289106--14289142 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
14289096 AATAAATAAT
14289106 ATATA ATATA ATATA ATATA ATATA TATATA TATATA
1 ATATA ATATA ATATA ATATA ATATA -ATATA -ATATA
14289143 TGGTCCTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 20 0.65
6 11 0.35
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
ATATA
Found at i:14289133 original size:2 final size:2
Alignment explanation
Indices: 14289104--14289143 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
14289094 CCAATAAATA
14289104 AT AT AT A- AT AT A- AT AT A- AT AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14289142 AT
1 AT
14289144 GGTCCTTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
1 4 0.12
2 30 0.88
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14289143 original size:10 final size:10
Alignment explanation
Indices: 14289104--14289143 Score: 52
Period size: 9 Copynumber: 4.4 Consensus size: 10
14289094 CCAATAAATA
14289104 ATATATA-AT
1 ATATATATAT
14289113 ATA-ATATA-
1 ATATATATAT
14289121 ATATA-ATAT
1 ATATATATAT
14289130 ATATATATAT
1 ATATATATAT
14289140 ATAT
1 ATAT
14289144 GGTCCTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
8 9 0.33
9 10 0.37
10 8 0.30
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
ATATATATAT
Found at i:14289728 original size:155 final size:155
Alignment explanation
Indices: 14289545--14292448 Score: 5808
Period size: 155 Copynumber: 18.7 Consensus size: 155
14289535 AGACATTTTT
14289545 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14289610 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14289675 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14289700 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14289765 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14289830 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14289855 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14289920 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14289985 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14290010 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14290075 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14290140 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14290165 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14290230 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14290295 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14290320 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14290385 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14290450 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14290475 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14290540 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14290605 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14290630 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14290695 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14290760 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14290785 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14290850 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14290915 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14290940 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14291005 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14291070 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14291095 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14291160 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14291225 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14291250 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14291315 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14291380 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14291405 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14291470 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14291535 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14291560 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14291625 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14291690 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14291715 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14291780 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14291845 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14291870 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14291935 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14292000 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14292025 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14292090 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14292155 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14292180 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14292245 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
14292310 CATGTTCAAGTTCAACATAATCCTA
131 CATGTTCAAGTTCAACATAATCCTA
14292335 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
1 GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
14292400 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAA
66 TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAA
14292449 TTTTTTATTA
Statistics
Matches: 2749, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 2749 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (155 bp):
GTAGTAGTTCCATGACATTACAAAACATCTTATTCAGATGTATGTAATAAAATACAATGAGACTC
TGCAAATGGTTTATCACAAAGTACTGCTAGAAGCCGACCTATGTAAGAAGTTTCCAGTTTTGCTA
CATGTTCAAGTTCAACATAATCCTA
Found at i:14296538 original size:70 final size:73
Alignment explanation
Indices: 14296377--14296590 Score: 251
Period size: 70 Copynumber: 2.9 Consensus size: 73
14296367 TATCCTTTAC
* *
14296377 CGGTGGATTCACCACTTAGCAACCACCAGTTATTCGGGGAATCAGCACTTAGCAA-CCCCTTTCA
1 CGGTGGAATCAACACTTAGCAACCACCA--TA-TCGGGGAATCAGCACTTAGCAACCCCCTTT-A
* *
14296441 CATT-TAAGATA
62 TATTCCAAGATA
* *
14296452 CGGTGGGATCAGCACTTAGCAACC-CC-T-T-GGGAGAATCAGCACTTAGCAACCCCCTTTATAT
1 CGGTGGAATCAACACTTAGCAACCACCATATCGGG-GAATCAGCACTTAGCAACCCCCTTTATAT
14296513 TCCAAGATA
65 TCCAAGATA
*
14296522 CGGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTTAT
1 CGGTGGAATCAACACTTAGCAACCACC-AT--ATCGGGGAATCAGCACTTAGCAACCCCCTTTAT
14296587 ATTC
63 ATTC
14296591 AATATACTCC
Statistics
Matches: 121, Mismatches: 8, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
68 3 0.02
69 22 0.18
70 35 0.29
71 3 0.02
73 1 0.01
74 2 0.02
75 21 0.17
76 31 0.26
77 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (73 bp):
CGGTGGAATCAACACTTAGCAACCACCATATCGGGGAATCAGCACTTAGCAACCCCCTTTATATT
CCAAGATA
Found at i:14296586 original size:76 final size:73
Alignment explanation
Indices: 14296377--14296590 Score: 258
Period size: 76 Copynumber: 2.9 Consensus size: 73
14296367 TATCCTTTAC
* * * *
14296377 CGGTGGATTCACCACTTAGCAACCACCAGTTATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAACACTTAGCAACCACCA--TA-TCGGGGAATCAGCACTTAGCAACCCCTTTTAT
*
14296442 ATT-TAAGATA
63 ATTCCAAGATA
* * *
14296452 CGGTGGGATCAGCACTTAGCAACC-CC-T-T-GGGAGAATCAGCACTTAGCAACCCCCTTTATAT
1 CGGTGGAATCAACACTTAGCAACCACCATATCGGG-GAATCAGCACTTAGCAACCCCTTTTATAT
14296513 TCCAAGATA
65 TCCAAGATA
14296522 CGGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTTAT
1 CGGTGGAATCAACACTTAGCAACCACC-AT--ATCGGGGAATCAGCACTTAGCAACCCCTTTTAT
14296587 ATTC
63 ATTC
14296591 AATATACTCC
Statistics
Matches: 120, Mismatches: 10, Indels: 17
0.82 0.07 0.12
Matches are distributed among these distances:
68 3 0.03
69 28 0.23
70 28 0.23
71 3 0.03
73 1 0.01
74 2 0.02
75 21 0.17
76 31 0.26
77 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (73 bp):
CGGTGGAATCAACACTTAGCAACCACCATATCGGGGAATCAGCACTTAGCAACCCCTTTTATATT
CCAAGATA
Found at i:14297675 original size:11 final size:12
Alignment explanation
Indices: 14297647--14297679 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14297637 GCCCAAACGT
14297647 CGAAATTTTCGAA
1 CGAAATTTTC-AA
14297660 CGAAATTTTC-A
1 CGAAATTTTCAA
14297671 CGAAATTTT
1 CGAAATTTT
14297680 TCCGTGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
13 10 0.50
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (12 bp):
CGAAATTTTCAA
Found at i:14300246 original size:17 final size:16
Alignment explanation
Indices: 14300220--14300251 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14300210 TGATAGGTCT
14300220 CTGGCGAGCTTCCAAA
1 CTGGCGAGCTTCCAAA
14300236 CTGGTCGAGCTTCCAA
1 CTGG-CGAGCTTCCAA
14300252 TAATCTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (16 bp):
CTGGCGAGCTTCCAAA
Found at i:14307067 original size:31 final size:31
Alignment explanation
Indices: 14307029--14307092 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
14307019 TTTTATTGAG
14307029 TTTGGATTTTAGGCGAGAAATAGAATGCTAA
1 TTTGGATTTTAGGCGAGAAATAGAATGCTAA
*
14307060 TTTGGATTTTAGGCGAGAATTAGAATGCTAA
1 TTTGGATTTTAGGCGAGAAATAGAATGCTAA
14307091 TT
1 TT
14307093 ATCGATACCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (31 bp):
TTTGGATTTTAGGCGAGAAATAGAATGCTAA
Found at i:14307892 original size:22 final size:22
Alignment explanation
Indices: 14307867--14307926 Score: 93
Period size: 24 Copynumber: 2.6 Consensus size: 22
14307857 AACACTTATA
*
14307867 ATCACATTACATGCTTAGGCAT
1 ATCACATCACATGCTTAGGCAT
14307889 ATCACATCACATGTGCTTAGGCAT
1 ATCACATCACA--TGCTTAGGCAT
14307913 ATCACATCACATGC
1 ATCACATCACATGC
14307927 AGGCTTTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
22 13 0.37
24 22 0.63
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (22 bp):
ATCACATCACATGCTTAGGCAT
Found at i:14307910 original size:24 final size:24
Alignment explanation
Indices: 14307878--14307925 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14307868 TCACATTACA
14307878 TGCTTAGGCATATCACATCACATG
1 TGCTTAGGCATATCACATCACATG
14307902 TGCTTAGGCATATCACATCACATG
1 TGCTTAGGCATATCACATCACATG
14307926 CAGGCTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (24 bp):
TGCTTAGGCATATCACATCACATG
Found at i:14315533 original size:35 final size:35
Alignment explanation
Indices: 14315487--14315557 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
14315477 ATGAGCTTTC
14315487 TTCTCCACTGAAATTAGGCTTGGAAAACCCCATTT
1 TTCTCCACTGAAATTAGGCTTGGAAAACCCCATTT
*
14315522 TTCTCCACTGAATTTAGGCTTGGAAAACCCCATTT
1 TTCTCCACTGAAATTAGGCTTGGAAAACCCCATTT
14315557 T
1 T
14315558 GGAGCTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCTCCACTGAAATTAGGCTTGGAAAACCCCATTT
Found at i:14316299 original size:39 final size:39
Alignment explanation
Indices: 14316230--14316343 Score: 131
Period size: 39 Copynumber: 2.9 Consensus size: 39
14316220 TATATAATTA
* * *
14316230 TACCTCTGATCGCACTTACATG-CCTCTGTTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCT-TGTTGTACTTCAG
*
14316269 TACCCCTGATCGCACTTACGTGCCCTTGTTGTACTACAG
1 TACCCCTGATCGCACTTACGTGCCCTTGTTGTACTTCAG
* * * * *
14316308 TAACCCTGATCGCACTTATGTACCCCTATTGTACTT
1 TACCCCTGATCGCACTTACGTGCCCTTGTTGTACTT
14316344 TGGCACTCCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 61 0.95
40 3 0.05
ACGTcount: A:0.18, C:0.32, G:0.16, T:0.34
Consensus pattern (39 bp):
TACCCCTGATCGCACTTACGTGCCCTTGTTGTACTTCAG
Found at i:14323656 original size:19 final size:19
Alignment explanation
Indices: 14323634--14323699 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
14323624 CACTTAAGTG
14323634 CCCCTGATGTACTTCGGTA
1 CCCCTGATGTACTTCGGTA
* * *
14323653 CCCCTAATTGCACTTAC-GTG
1 CCCCTGA-TGTACTT-CGGTA
*
14323673 CCCCTGTTGTACTTCGGTA
1 CCCCTGATGTACTTCGGTA
*
14323692 ACCCTGAT
1 CCCCTGAT
14323700 CGCATTTTCT
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.57
20 13 0.37
21 1 0.03
ACGTcount: A:0.17, C:0.33, G:0.18, T:0.32
Consensus pattern (19 bp):
CCCCTGATGTACTTCGGTA
Found at i:14323674 original size:39 final size:39
Alignment explanation
Indices: 14323620--14323696 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
14323610 TATACCTCTG
*
14323620 ATTGCACTTAAGTGCCCCTGATGTACTTCGGTACCCCTA
1 ATTGCACTTAAGTGCCCCTGATGTACTTCGGTAACCCTA
* *
14323659 ATTGCACTTACGTGCCCCTGTTGTACTTCGGTAACCCT
1 ATTGCACTTAAGTGCCCCTGATGTACTTCGGTAACCCT
14323697 GATCGCATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.32
Consensus pattern (39 bp):
ATTGCACTTAAGTGCCCCTGATGTACTTCGGTAACCCTA
Found at i:14323676 original size:20 final size:20
Alignment explanation
Indices: 14323620--14323677 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
14323610 TATACCTCTG
* *
14323620 ATTGCACTTAAGTGCCCCTG
1 ATTGCACTTACGTGCCCCTA
* *
14323640 A-TGTACTT-CGGTACCCCTA
1 ATTGCACTTAC-GTGCCCCTA
14323659 ATTGCACTTACGTGCCCCT
1 ATTGCACTTACGTGCCCCT
14323678 GTTGTACTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
19 14 0.48
20 14 0.48
21 1 0.03
ACGTcount: A:0.19, C:0.33, G:0.17, T:0.31
Consensus pattern (20 bp):
ATTGCACTTACGTGCCCCTA
Found at i:14326143 original size:5 final size:5
Alignment explanation
Indices: 14326123--14326170 Score: 78
Period size: 5 Copynumber: 9.6 Consensus size: 5
14326113 GGTTAAGTAA
* *
14326123 TTTGG TTAGC TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTT
1 TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTT
14326171 AATAATTGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.02, C:0.02, G:0.35, T:0.60
Consensus pattern (5 bp):
TTTGG
Found at i:14326205 original size:14 final size:14
Alignment explanation
Indices: 14326183--14326222 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
14326173 TAATTGTTTT
14326183 TCTAA-AATTTTAG
1 TCTAATAATTTTAG
14326196 TCTAATAATTTTAG
1 TCTAATAATTTTAG
14326210 TCTAATAATTTTA
1 TCTAATAATTTTA
14326223 TTTGGTTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 5 0.19
14 21 0.81
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (14 bp):
TCTAATAATTTTAG
Found at i:14332092 original size:14 final size:15
Alignment explanation
Indices: 14332016--14332092 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14332006 GATAGCCAGT
* *
14332016 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
14332030 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
14332044 AAAATGTTCTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
14332064 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
14332079 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
14332093 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:14337788 original size:17 final size:17
Alignment explanation
Indices: 14337768--14337806 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
14337758 TTCTTTAGAT
*
14337768 TTTTTTTAAATTTATAA
1 TTTTTTTAAATATATAA
14337785 TTTTTTTAAATATATAA
1 TTTTTTTAAATATATAA
*
14337802 ATTTT
1 TTTTT
14337807 GTAATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTTTAAATATATAA
Found at i:14337818 original size:26 final size:25
Alignment explanation
Indices: 14337774--14337823 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
14337764 AGATTTTTTT
14337774 TAAATTTATAATTTTTTTAAATATA
1 TAAATTTATAATTTTTTTAAATATA
*
14337799 TAAATTTTGTAATTTTTTTAAATAT
1 TAAA-TTTATAATTTTTTTAAATAT
14337824 TTTGAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
TAAATTTATAATTTTTTTAAATATA
Found at i:14337833 original size:19 final size:20
Alignment explanation
Indices: 14337802--14337874 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
14337792 AAATATATAA
*
14337802 ATTTTGTAATTTTTTTAAA-T
1 ATTTTG-AATTTTTTAAAATT
*
14337822 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTTAAAATT
* *
14337841 ATTTTGAATATTTGAAAATT
1 ATTTTGAATTTTTTAAAATT
*
14337861 ATTTTGTATTTTTT
1 ATTTTGAATTTTTT
14337875 TGTTGAGAGA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
18 7 0.16
19 11 0.25
20 26 0.59
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (20 bp):
ATTTTGAATTTTTTAAAATT
Found at i:14337840 original size:28 final size:27
Alignment explanation
Indices: 14337771--14337853 Score: 80
Period size: 26 Copynumber: 3.1 Consensus size: 27
14337761 TTTAGATTTT
*
14337771 TTTTAAA-TTTATAATTTTTTTAAATA
1 TTTTAAATTTTAAAATTTTTTTAAATA
* **
14337797 -TATAAATTTTGTAATTTTTTTAAATA
1 TTTTAAATTTTAAAATTTTTTTAAATA
* * *
14337823 TTTTGAATTTTAAAAATTATTTTGAATA
1 TTTTAAATTTT-AAAATTTTTTTAAATA
14337851 TTT
1 TTT
14337854 GAAAATTATT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 5 0.11
26 18 0.39
27 8 0.17
28 15 0.33
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTTAAATTTTAAAATTTTTTTAAATA
Found at i:14340278 original size:12 final size:12
Alignment explanation
Indices: 14340261--14340285 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14340251 AGACTTTGAG
14340261 TTTTTTCTTTTT
1 TTTTTTCTTTTT
14340273 TTTTTTCTTTTT
1 TTTTTTCTTTTT
14340285 T
1 T
14340286 ATTTGGGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:14342434 original size:23 final size:23
Alignment explanation
Indices: 14342380--14342434 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
14342370 ATTCAAGTTT
*
14342380 AATTTGATACATGAATTATTTTG
1 AATTTGATCCATGAATTATTTTG
14342403 AATTTGATCCATGAATTATTTTG
1 AATTTGATCCATGAATTATTTTG
14342426 AATTTGATC
1 AATTTGATC
14342435 ATATTGTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (23 bp):
AATTTGATCCATGAATTATTTTG
Found at i:14344177 original size:17 final size:18
Alignment explanation
Indices: 14344137--14344178 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
14344127 GACTAAATTG
14344137 TGAAAATGTAAAAGTTTAA
1 TGAAAATGTAAAAG-TTAA
* *
14344156 GGAAAATGTATAA-TTAA
1 TGAAAATGTAAAAGTTAA
14344173 TGAAAA
1 TGAAAA
14344179 GTTAAGGGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 9 0.45
19 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAAATGTAAAAGTTAA
Found at i:14349565 original size:40 final size:39
Alignment explanation
Indices: 14349502--14349642 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 39
14349492 GGCGTTTGGA
14349502 CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
1 CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
* * *
14349541 ACATAAAATGCCGCTAAAGATCGAGCATTAGCGGCGCTTT
1 -CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
**
14349581 CAAAAAAGCGCCGCTAAAAAT-GAGCATTAGCGGCATTTTTT
1 CAAAAAA-CGCCGCTAAAAATCGAGCATTAGCGGC--GCTTT
*
14349622 GAAAAAACGCCGCTAAAAATC
1 CAAAAAACGCCGCTAAAAATC
14349643 TAAGCCCAAC
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
39 19 0.22
40 60 0.68
41 9 0.10
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (39 bp):
CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
Found at i:14349728 original size:41 final size:41
Alignment explanation
Indices: 14349674--14349784 Score: 156
Period size: 41 Copynumber: 2.7 Consensus size: 41
14349664 TGACCTTTCG
14349674 GGGC-TTTAGCGGCGTTTTTTAAAAAGCGTC-GCTAATGCTC
1 GGGCTTTTAGCGGCGTTTTTTAAAAAGCG-CAGCTAATGCTC
* *
14349714 GGGCTTTTAGCGGCGTTTTTGAAAAAGCGCAGCTAATGCTT
1 GGGCTTTTAGCGGCGTTTTTTAAAAAGCGCAGCTAATGCTC
*
14349755 AGGCTTTTAGCGGCG-TTTTTAGAAAAGCGC
1 GGGCTTTTAGCGGCGTTTTTTA-AAAAGCGC
14349785 CGCAAAAATA
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
40 10 0.16
41 54 0.84
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (41 bp):
GGGCTTTTAGCGGCGTTTTTTAAAAAGCGCAGCTAATGCTC
Found at i:14350200 original size:7 final size:7
Alignment explanation
Indices: 14350188--14350213 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14350178 ACAGTAAGGC
14350188 GTTAGGG
1 GTTAGGG
14350195 GTTAGGG
1 GTTAGGG
14350202 GTTAGGG
1 GTTAGGG
14350209 GTTAG
1 GTTAG
14350214 AGATTAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.54, T:0.31
Consensus pattern (7 bp):
GTTAGGG
Found at i:14350334 original size:13 final size:13
Alignment explanation
Indices: 14350309--14350346 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14350299 TATTAAATAA
14350309 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14350323 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14350336 GGTTTAGGGTT
1 GGTTTAGGGTT
14350347 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14350344 original size:74 final size:76
Alignment explanation
Indices: 14350257--14350400 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14350247 TCGGTATCAA
* * *
14350257 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350320 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14350331 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350396 TAGGG
66 TAGGG
14350401 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14350400 original size:7 final size:7
Alignment explanation
Indices: 14350388--14350412 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14350378 TAAAGAAGGT
14350388 TTAGGGG
1 TTAGGGG
14350395 TTAGGGG
1 TTAGGGG
14350402 TTAGGGG
1 TTAGGGG
14350409 TTAG
1 TTAG
14350413 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14350529 original size:199 final size:199
Alignment explanation
Indices: 14350189--14356133 Score: 11890
Period size: 199 Copynumber: 29.9 Consensus size: 199
14350179 CAGTAAGGCG
14350189 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14350254 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14350319 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14350384 AGGT
196 AGGT
14350388 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14350453 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14350518 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14350583 AGGT
196 AGGT
14350587 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14350652 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14350717 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14350782 AGGT
196 AGGT
14350786 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14350851 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14350916 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14350981 AGGT
196 AGGT
14350985 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14351050 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14351115 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14351180 AGGT
196 AGGT
14351184 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14351249 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14351314 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14351379 AGGT
196 AGGT
14351383 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14351448 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14351513 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14351578 AGGT
196 AGGT
14351582 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14351647 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14351712 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14351777 AGGT
196 AGGT
14351781 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14351846 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14351911 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14351976 AGGT
196 AGGT
14351980 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14352045 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14352110 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14352175 AGGT
196 AGGT
14352179 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14352244 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14352309 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14352374 AGGT
196 AGGT
14352378 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14352443 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14352508 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14352573 AGGT
196 AGGT
14352577 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14352642 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14352707 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14352772 AGGT
196 AGGT
14352776 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14352841 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14352906 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14352971 AGGT
196 AGGT
14352975 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14353040 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14353105 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14353170 AGGT
196 AGGT
14353174 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14353239 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14353304 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14353369 AGGT
196 AGGT
14353373 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14353438 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14353503 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14353568 AGGT
196 AGGT
14353572 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14353637 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14353702 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14353767 AGGT
196 AGGT
14353771 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14353836 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14353901 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14353966 AGGT
196 AGGT
14353970 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14354035 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14354100 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14354165 AGGT
196 AGGT
14354169 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14354234 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14354299 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14354364 AGGT
196 AGGT
14354368 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14354433 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14354498 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14354563 AGGT
196 AGGT
14354567 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14354632 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14354697 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14354762 AGGT
196 AGGT
14354766 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14354831 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14354896 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14354961 AGGT
196 AGGT
14354965 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14355030 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14355095 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14355160 AGGT
196 AGGT
14355164 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14355229 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14355294 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14355359 AGGT
196 AGGT
14355363 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14355428 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14355493 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14355558 AGGT
196 AGGT
14355562 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14355627 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14355692 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14355757 AGGT
196 AGGT
14355761 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14355826 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14355891 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
14355956 AGGT
196 AGGT
14355960 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
14356025 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
14356090 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATT
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATT
14356134 GAATGCTACT
Statistics
Matches: 5746, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
199 5746 1.00
ACGTcount: A:0.29, C:0.02, G:0.28, T:0.41
Consensus pattern (199 bp):
TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
AGGT
Found at i:14350533 original size:13 final size:13
Alignment explanation
Indices: 14350508--14350545 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14350498 TATTAAATAA
14350508 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14350522 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14350535 GGTTTAGGGTT
1 GGTTTAGGGTT
14350546 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14350566 original size:74 final size:76
Alignment explanation
Indices: 14350456--14350599 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14350446 TCGGTATCAA
* * *
14350456 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350519 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14350530 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350595 TAGGG
66 TAGGG
14350600 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14350599 original size:7 final size:7
Alignment explanation
Indices: 14350587--14350611 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14350577 TAAAGAAGGT
14350587 TTAGGGG
1 TTAGGGG
14350594 TTAGGGG
1 TTAGGGG
14350601 TTAGGGG
1 TTAGGGG
14350608 TTAG
1 TTAG
14350612 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14350732 original size:13 final size:13
Alignment explanation
Indices: 14350707--14350744 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14350697 TATTAAATAA
14350707 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14350721 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14350734 GGTTTAGGGTT
1 GGTTTAGGGTT
14350745 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14350765 original size:74 final size:76
Alignment explanation
Indices: 14350655--14350798 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14350645 TCGGTATCAA
* * *
14350655 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350718 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14350729 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350794 TAGGG
66 TAGGG
14350799 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14350798 original size:7 final size:7
Alignment explanation
Indices: 14350786--14350810 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14350776 TAAAGAAGGT
14350786 TTAGGGG
1 TTAGGGG
14350793 TTAGGGG
1 TTAGGGG
14350800 TTAGGGG
1 TTAGGGG
14350807 TTAG
1 TTAG
14350811 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14350931 original size:13 final size:13
Alignment explanation
Indices: 14350906--14350943 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14350896 TATTAAATAA
14350906 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14350920 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14350933 GGTTTAGGGTT
1 GGTTTAGGGTT
14350944 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14350964 original size:74 final size:76
Alignment explanation
Indices: 14350854--14350997 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14350844 TCGGTATCAA
* * *
14350854 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350917 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14350928 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14350993 TAGGG
66 TAGGG
14350998 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14350997 original size:7 final size:7
Alignment explanation
Indices: 14350985--14351009 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14350975 TAAAGAAGGT
14350985 TTAGGGG
1 TTAGGGG
14350992 TTAGGGG
1 TTAGGGG
14350999 TTAGGGG
1 TTAGGGG
14351006 TTAG
1 TTAG
14351010 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14351130 original size:13 final size:13
Alignment explanation
Indices: 14351105--14351142 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14351095 TATTAAATAA
14351105 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14351119 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14351132 GGTTTAGGGTT
1 GGTTTAGGGTT
14351143 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14351163 original size:74 final size:76
Alignment explanation
Indices: 14351053--14351196 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14351043 TCGGTATCAA
* * *
14351053 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351116 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14351127 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351192 TAGGG
66 TAGGG
14351197 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14351196 original size:7 final size:7
Alignment explanation
Indices: 14351184--14351208 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14351174 TAAAGAAGGT
14351184 TTAGGGG
1 TTAGGGG
14351191 TTAGGGG
1 TTAGGGG
14351198 TTAGGGG
1 TTAGGGG
14351205 TTAG
1 TTAG
14351209 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14351329 original size:13 final size:13
Alignment explanation
Indices: 14351304--14351341 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14351294 TATTAAATAA
14351304 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14351318 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14351331 GGTTTAGGGTT
1 GGTTTAGGGTT
14351342 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14351362 original size:74 final size:76
Alignment explanation
Indices: 14351252--14351395 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14351242 TCGGTATCAA
* * *
14351252 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351315 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14351326 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351391 TAGGG
66 TAGGG
14351396 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14351395 original size:7 final size:7
Alignment explanation
Indices: 14351383--14351407 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14351373 TAAAGAAGGT
14351383 TTAGGGG
1 TTAGGGG
14351390 TTAGGGG
1 TTAGGGG
14351397 TTAGGGG
1 TTAGGGG
14351404 TTAG
1 TTAG
14351408 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14351528 original size:13 final size:13
Alignment explanation
Indices: 14351503--14351540 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14351493 TATTAAATAA
14351503 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14351517 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14351530 GGTTTAGGGTT
1 GGTTTAGGGTT
14351541 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14351561 original size:74 final size:76
Alignment explanation
Indices: 14351451--14351594 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14351441 TCGGTATCAA
* * *
14351451 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351514 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14351525 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351590 TAGGG
66 TAGGG
14351595 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14351594 original size:7 final size:7
Alignment explanation
Indices: 14351582--14351606 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14351572 TAAAGAAGGT
14351582 TTAGGGG
1 TTAGGGG
14351589 TTAGGGG
1 TTAGGGG
14351596 TTAGGGG
1 TTAGGGG
14351603 TTAG
1 TTAG
14351607 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14351727 original size:13 final size:13
Alignment explanation
Indices: 14351702--14351739 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14351692 TATTAAATAA
14351702 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14351716 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14351729 GGTTTAGGGTT
1 GGTTTAGGGTT
14351740 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14351760 original size:74 final size:76
Alignment explanation
Indices: 14351650--14351793 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14351640 TCGGTATCAA
* * *
14351650 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351713 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14351724 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351789 TAGGG
66 TAGGG
14351794 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14351793 original size:7 final size:7
Alignment explanation
Indices: 14351781--14351805 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14351771 TAAAGAAGGT
14351781 TTAGGGG
1 TTAGGGG
14351788 TTAGGGG
1 TTAGGGG
14351795 TTAGGGG
1 TTAGGGG
14351802 TTAG
1 TTAG
14351806 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14351926 original size:13 final size:13
Alignment explanation
Indices: 14351901--14351938 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14351891 TATTAAATAA
14351901 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14351915 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14351928 GGTTTAGGGTT
1 GGTTTAGGGTT
14351939 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14351959 original size:74 final size:76
Alignment explanation
Indices: 14351849--14351992 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14351839 TCGGTATCAA
* * *
14351849 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351912 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14351923 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14351988 TAGGG
66 TAGGG
14351993 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14351992 original size:7 final size:7
Alignment explanation
Indices: 14351980--14352004 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14351970 TAAAGAAGGT
14351980 TTAGGGG
1 TTAGGGG
14351987 TTAGGGG
1 TTAGGGG
14351994 TTAGGGG
1 TTAGGGG
14352001 TTAG
1 TTAG
14352005 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14352125 original size:13 final size:13
Alignment explanation
Indices: 14352100--14352137 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14352090 TATTAAATAA
14352100 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14352114 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14352127 GGTTTAGGGTT
1 GGTTTAGGGTT
14352138 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14352158 original size:74 final size:76
Alignment explanation
Indices: 14352048--14352191 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14352038 TCGGTATCAA
* * *
14352048 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352111 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14352122 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352187 TAGGG
66 TAGGG
14352192 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14352191 original size:7 final size:7
Alignment explanation
Indices: 14352179--14352203 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14352169 TAAAGAAGGT
14352179 TTAGGGG
1 TTAGGGG
14352186 TTAGGGG
1 TTAGGGG
14352193 TTAGGGG
1 TTAGGGG
14352200 TTAG
1 TTAG
14352204 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14352324 original size:13 final size:13
Alignment explanation
Indices: 14352299--14352336 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14352289 TATTAAATAA
14352299 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14352313 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14352326 GGTTTAGGGTT
1 GGTTTAGGGTT
14352337 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14352357 original size:74 final size:76
Alignment explanation
Indices: 14352247--14352390 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14352237 TCGGTATCAA
* * *
14352247 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352310 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14352321 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352386 TAGGG
66 TAGGG
14352391 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14352390 original size:7 final size:7
Alignment explanation
Indices: 14352378--14352402 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14352368 TAAAGAAGGT
14352378 TTAGGGG
1 TTAGGGG
14352385 TTAGGGG
1 TTAGGGG
14352392 TTAGGGG
1 TTAGGGG
14352399 TTAG
1 TTAG
14352403 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14352523 original size:13 final size:13
Alignment explanation
Indices: 14352498--14352535 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14352488 TATTAAATAA
14352498 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14352512 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14352525 GGTTTAGGGTT
1 GGTTTAGGGTT
14352536 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14352556 original size:74 final size:76
Alignment explanation
Indices: 14352446--14352589 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14352436 TCGGTATCAA
* * *
14352446 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352509 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14352520 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352585 TAGGG
66 TAGGG
14352590 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14352589 original size:7 final size:7
Alignment explanation
Indices: 14352577--14352601 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14352567 TAAAGAAGGT
14352577 TTAGGGG
1 TTAGGGG
14352584 TTAGGGG
1 TTAGGGG
14352591 TTAGGGG
1 TTAGGGG
14352598 TTAG
1 TTAG
14352602 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14352722 original size:13 final size:13
Alignment explanation
Indices: 14352697--14352734 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14352687 TATTAAATAA
14352697 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14352711 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14352724 GGTTTAGGGTT
1 GGTTTAGGGTT
14352735 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14352755 original size:74 final size:76
Alignment explanation
Indices: 14352645--14352788 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14352635 TCGGTATCAA
* * *
14352645 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352708 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14352719 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352784 TAGGG
66 TAGGG
14352789 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14352788 original size:7 final size:7
Alignment explanation
Indices: 14352776--14352800 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14352766 TAAAGAAGGT
14352776 TTAGGGG
1 TTAGGGG
14352783 TTAGGGG
1 TTAGGGG
14352790 TTAGGGG
1 TTAGGGG
14352797 TTAG
1 TTAG
14352801 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14352921 original size:13 final size:13
Alignment explanation
Indices: 14352896--14352933 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14352886 TATTAAATAA
14352896 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14352910 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14352923 GGTTTAGGGTT
1 GGTTTAGGGTT
14352934 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14352954 original size:74 final size:76
Alignment explanation
Indices: 14352844--14352987 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14352834 TCGGTATCAA
* * *
14352844 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352907 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14352918 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14352983 TAGGG
66 TAGGG
14352988 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14352987 original size:7 final size:7
Alignment explanation
Indices: 14352975--14352999 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14352965 TAAAGAAGGT
14352975 TTAGGGG
1 TTAGGGG
14352982 TTAGGGG
1 TTAGGGG
14352989 TTAGGGG
1 TTAGGGG
14352996 TTAG
1 TTAG
14353000 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14353120 original size:13 final size:13
Alignment explanation
Indices: 14353095--14353132 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14353085 TATTAAATAA
14353095 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14353109 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14353122 GGTTTAGGGTT
1 GGTTTAGGGTT
14353133 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14353153 original size:74 final size:76
Alignment explanation
Indices: 14353043--14353186 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14353033 TCGGTATCAA
* * *
14353043 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353106 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14353117 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353182 TAGGG
66 TAGGG
14353187 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14353186 original size:7 final size:7
Alignment explanation
Indices: 14353174--14353198 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14353164 TAAAGAAGGT
14353174 TTAGGGG
1 TTAGGGG
14353181 TTAGGGG
1 TTAGGGG
14353188 TTAGGGG
1 TTAGGGG
14353195 TTAG
1 TTAG
14353199 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14353319 original size:13 final size:13
Alignment explanation
Indices: 14353294--14353331 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14353284 TATTAAATAA
14353294 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14353308 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14353321 GGTTTAGGGTT
1 GGTTTAGGGTT
14353332 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14353352 original size:74 final size:76
Alignment explanation
Indices: 14353242--14353385 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14353232 TCGGTATCAA
* * *
14353242 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353305 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14353316 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353381 TAGGG
66 TAGGG
14353386 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14353385 original size:7 final size:7
Alignment explanation
Indices: 14353373--14353397 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14353363 TAAAGAAGGT
14353373 TTAGGGG
1 TTAGGGG
14353380 TTAGGGG
1 TTAGGGG
14353387 TTAGGGG
1 TTAGGGG
14353394 TTAG
1 TTAG
14353398 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14353518 original size:13 final size:13
Alignment explanation
Indices: 14353493--14353530 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14353483 TATTAAATAA
14353493 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14353507 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14353520 GGTTTAGGGTT
1 GGTTTAGGGTT
14353531 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14353551 original size:74 final size:76
Alignment explanation
Indices: 14353441--14353584 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14353431 TCGGTATCAA
* * *
14353441 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353504 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14353515 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353580 TAGGG
66 TAGGG
14353585 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14353584 original size:7 final size:7
Alignment explanation
Indices: 14353572--14353596 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14353562 TAAAGAAGGT
14353572 TTAGGGG
1 TTAGGGG
14353579 TTAGGGG
1 TTAGGGG
14353586 TTAGGGG
1 TTAGGGG
14353593 TTAG
1 TTAG
14353597 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14353717 original size:13 final size:13
Alignment explanation
Indices: 14353692--14353729 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14353682 TATTAAATAA
14353692 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14353706 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14353719 GGTTTAGGGTT
1 GGTTTAGGGTT
14353730 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14353750 original size:74 final size:76
Alignment explanation
Indices: 14353640--14353783 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14353630 TCGGTATCAA
* * *
14353640 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353703 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14353714 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353779 TAGGG
66 TAGGG
14353784 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14353783 original size:7 final size:7
Alignment explanation
Indices: 14353771--14353795 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14353761 TAAAGAAGGT
14353771 TTAGGGG
1 TTAGGGG
14353778 TTAGGGG
1 TTAGGGG
14353785 TTAGGGG
1 TTAGGGG
14353792 TTAG
1 TTAG
14353796 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14353916 original size:13 final size:13
Alignment explanation
Indices: 14353891--14353928 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14353881 TATTAAATAA
14353891 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14353905 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14353918 GGTTTAGGGTT
1 GGTTTAGGGTT
14353929 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14353949 original size:74 final size:76
Alignment explanation
Indices: 14353839--14353982 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14353829 TCGGTATCAA
* * *
14353839 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353902 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14353913 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14353978 TAGGG
66 TAGGG
14353983 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14353982 original size:7 final size:7
Alignment explanation
Indices: 14353970--14353994 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14353960 TAAAGAAGGT
14353970 TTAGGGG
1 TTAGGGG
14353977 TTAGGGG
1 TTAGGGG
14353984 TTAGGGG
1 TTAGGGG
14353991 TTAG
1 TTAG
14353995 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14354115 original size:13 final size:13
Alignment explanation
Indices: 14354090--14354127 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14354080 TATTAAATAA
14354090 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14354104 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14354117 GGTTTAGGGTT
1 GGTTTAGGGTT
14354128 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14354148 original size:74 final size:76
Alignment explanation
Indices: 14354038--14354181 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14354028 TCGGTATCAA
* * *
14354038 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354101 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14354112 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354177 TAGGG
66 TAGGG
14354182 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14354181 original size:7 final size:7
Alignment explanation
Indices: 14354169--14354193 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14354159 TAAAGAAGGT
14354169 TTAGGGG
1 TTAGGGG
14354176 TTAGGGG
1 TTAGGGG
14354183 TTAGGGG
1 TTAGGGG
14354190 TTAG
1 TTAG
14354194 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14354314 original size:13 final size:13
Alignment explanation
Indices: 14354289--14354326 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14354279 TATTAAATAA
14354289 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14354303 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14354316 GGTTTAGGGTT
1 GGTTTAGGGTT
14354327 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14354347 original size:74 final size:76
Alignment explanation
Indices: 14354237--14354380 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14354227 TCGGTATCAA
* * *
14354237 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354300 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14354311 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354376 TAGGG
66 TAGGG
14354381 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14354380 original size:7 final size:7
Alignment explanation
Indices: 14354368--14354392 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14354358 TAAAGAAGGT
14354368 TTAGGGG
1 TTAGGGG
14354375 TTAGGGG
1 TTAGGGG
14354382 TTAGGGG
1 TTAGGGG
14354389 TTAG
1 TTAG
14354393 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14354513 original size:13 final size:13
Alignment explanation
Indices: 14354488--14354525 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14354478 TATTAAATAA
14354488 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14354502 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14354515 GGTTTAGGGTT
1 GGTTTAGGGTT
14354526 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14354546 original size:74 final size:76
Alignment explanation
Indices: 14354436--14354579 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14354426 TCGGTATCAA
* * *
14354436 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354499 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14354510 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354575 TAGGG
66 TAGGG
14354580 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14354579 original size:7 final size:7
Alignment explanation
Indices: 14354567--14354591 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14354557 TAAAGAAGGT
14354567 TTAGGGG
1 TTAGGGG
14354574 TTAGGGG
1 TTAGGGG
14354581 TTAGGGG
1 TTAGGGG
14354588 TTAG
1 TTAG
14354592 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14354712 original size:13 final size:13
Alignment explanation
Indices: 14354687--14354724 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14354677 TATTAAATAA
14354687 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14354701 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14354714 GGTTTAGGGTT
1 GGTTTAGGGTT
14354725 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14354745 original size:74 final size:76
Alignment explanation
Indices: 14354635--14354778 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14354625 TCGGTATCAA
* * *
14354635 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354698 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14354709 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354774 TAGGG
66 TAGGG
14354779 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14354778 original size:7 final size:7
Alignment explanation
Indices: 14354766--14354790 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14354756 TAAAGAAGGT
14354766 TTAGGGG
1 TTAGGGG
14354773 TTAGGGG
1 TTAGGGG
14354780 TTAGGGG
1 TTAGGGG
14354787 TTAG
1 TTAG
14354791 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14354911 original size:13 final size:13
Alignment explanation
Indices: 14354886--14354923 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14354876 TATTAAATAA
14354886 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14354900 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14354913 GGTTTAGGGTT
1 GGTTTAGGGTT
14354924 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14354944 original size:74 final size:76
Alignment explanation
Indices: 14354834--14354977 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14354824 TCGGTATCAA
* * *
14354834 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354897 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14354908 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14354973 TAGGG
66 TAGGG
14354978 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:14354977 original size:7 final size:7
Alignment explanation
Indices: 14354965--14354989 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14354955 TAAAGAAGGT
14354965 TTAGGGG
1 TTAGGGG
14354972 TTAGGGG
1 TTAGGGG
14354979 TTAGGGG
1 TTAGGGG
14354986 TTAG
1 TTAG
14354990 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:14355110 original size:13 final size:13
Alignment explanation
Indices: 14355085--14355122 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
14355075 TATTAAATAA
14355085 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
14355099 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
14355112 GGTTTAGGGTT
1 GGTTTAGGGTT
14355123 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:14355143 original size:74 final size:76
Alignment explanation
Indices: 14355033--14355176 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
14355023 TCGGTATCAA
* * *
14355033 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14355096 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
14355107 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
14355172 TAGGG
66 TAGGG
14355177 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Done.