Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 48 of 131
Found at i:15974821 original size:20 final size:21
Alignment explanation
Indices: 15974796--15974857 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 21
15974786 AAAAATTAAG
15974796 AATTATTCTATAATGATAA-A
1 AATTATTCTATAATGATAATA
* * *
15974816 AATTATTAATTTAA--ATAATC
1 AATTATT-CTATAATGATAATA
15974836 AATTATTCTATAATGATAATA
1 AATTATTCTATAATGATAATA
15974857 A
1 A
15974858 TAAGGTGTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
19 8 0.25
20 14 0.44
21 10 0.31
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (21 bp):
AATTATTCTATAATGATAATA
Found at i:15977931 original size:16 final size:16
Alignment explanation
Indices: 15977907--15977937 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15977897 TGCTTAGCCT
15977907 TTTAATTGTTGGGCCC
1 TTTAATTGTTGGGCCC
*
15977923 TTTACTTGTTGGGCC
1 TTTAATTGTTGGGCC
15977938 AGTAAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.19, G:0.26, T:0.45
Consensus pattern (16 bp):
TTTAATTGTTGGGCCC
Found at i:15978851 original size:257 final size:259
Alignment explanation
Indices: 15978405--15979012 Score: 929
Period size: 257 Copynumber: 2.3 Consensus size: 259
15978395 AAATAGGGTA
* * * * *
15978405 ACTGGCTTCAATGTACTCCACTGTAAAC-ACAGAGAGGTAAAATCCACTATCTTTGATCTGCTCC
1 ACTGGCTTCAATGTACTCCACTG-CAACTTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCC
* * *
15978469 ACCACTGCTTAGAGAAACAAGATCTGAAATCCTCAATCTATTCCACTGCTGCCCAAGGAGATAAA
65 ACTACTGCTTAGGGAGACAAGA--TG--AT-CTCAATCTATTCCACTGCTGCCCAAGGAGATAAA
* *
15978534 ATTACTGGTTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCT
125 ATTACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCT
*
15978599 CCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGCCCAGGGAAGTA
190 CCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTA
15978664 GAATT
255 GAATT
*
15978669 ACTGGCTTCAATGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCA
1 ACTGGCTTCAATGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
* *
15978734 CTACTGCATAGGGAGACAAGATG-T-TCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAAATT-
66 CTACTGCTTAGGGAGACAAGATGATCTCAATCTATTCCACTGCTGCCCAAGGAGA-TA-AAATTA
* *
15978795 CTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCAC
129 CTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCAC
*
15978860 TACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAAT
194 TACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAAT
15978925 T
259 T
* *
15978926 ACTGGCTTCAATGTACTCCACTGCAATTTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCCCCA
1 ACTGGCTTCAATGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
*
15978991 CTACTGCTTAGGGAGGCAAGAT
66 CTACTGCTTAGGGAGACAAGAT
15979013 CTGTTATCAT
Statistics
Matches: 319, Mismatches: 22, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
256 1 0.00
257 235 0.74
258 5 0.02
259 1 0.00
262 2 0.01
263 3 0.01
264 72 0.23
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (259 bp):
ACTGGCTTCAATGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
CTACTGCTTAGGGAGACAAGATGATCTCAATCTATTCCACTGCTGCCCAAGGAGATAAAATTACT
GGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTA
CTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATT
Found at i:15979016 original size:132 final size:132
Alignment explanation
Indices: 15978405--15979015 Score: 889
Period size: 132 Copynumber: 4.7 Consensus size: 132
15978395 AAATAGGGTA
* * * * * *
15978405 ACTGGCTTCAATGTACTCCACTGTAAACACAGAGAGGTAAAATCCACTATCTTTGATCTGCTCCA
1 ACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
* * ** * * *
15978470 CCACTGCTTAGAGAAACAAGATCTGAAATCCTCAATCTATTCCACTGCTGCCCAAGG-AGATAAA
66 CTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGA
15978534 ATT
130 ATT
* * *
15978537 ACTGGTTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
1 ACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
* *
15978602 CTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGCCCAGGGAAGTAGAA
66 CTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
15978667 TT
131 TT
* *
15978669 ACTGGCTTCAATGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCA
1 ACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
* *
15978734 CTACTGCATAGGGAGACAAGA--TG-----TTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
66 CTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAG-A
15978792 ATT
130 ATT
*
15978795 -CTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCA
1 ACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
* *
15978859 CTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCGCTGCTGCCCAGGGAAGTAGAA
66 CTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
15978924 TT
131 TT
** *
15978926 ACTGGCTTCAATGTACTCCACTGCAATTTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCCCCA
1 ACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
15978991 CTACTGCTTAGGGAGGCAAGATCTG
66 CTACTGCTTAGGGAGGCAAGATCTG
15979016 TTATCATCAC
Statistics
Matches: 436, Mismatches: 33, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
125 111 0.25
126 4 0.01
127 2 0.00
130 2 0.00
131 4 0.01
132 311 0.71
133 2 0.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (132 bp):
ACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCA
CTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
TT
Found at i:15988002 original size:414 final size:383
Alignment explanation
Indices: 15987220--15988018 Score: 1256
Period size: 414 Copynumber: 2.0 Consensus size: 383
15987210 ATATATGAAT
15987220 AAGATATATATCTTTTTTAAAATATATATTAGAAAATAAAAAAATATATAGATATGCAAGGTAAA
1 AAGATATATATCTTTTTTAAAATATATATTAGAAAATAAAAAAATATATAGATATGCAAGGTAAA
15987285 AGATTTTGTATTATAAAGTTTAAATGTATGAAAAAATTAAAATAAAATTTTAGTTAAAGTGGTAA
66 AGATTTTGTATTATAAAGTTTAAATGTATGAAAAAATTAAAATAAAATTTTAGTTAAAGTGGTAA
15987350 AAAAAGTTTATAGATGTTGGTGGTAATGATTCAAATATTAATATTTGTAATTTTTTATCGATTTT
131 AAAAAGTTTATAGATGTTGGTGGTAATGATTCAAATATTAATATTTGTAATTTTTTATCGATTTT
15987415 TTATTAAAAAAAACACACACAAAAAAAACTCTCATGATAACACAACTTATTTTGAATATTTTAAG
196 TTATTAAAAAAAACACACACAAAAAAAACTCTCATGATAACACAACTTATTTTGAATATTTTAAG
15987480 ATTTTTTTTGACTAAATTAATGTCAAGTTAAATATATTTAAACAATAATATAGATTATTTACACT
261 ATTTTTTTTGACTAAATTAATGTCAAGTTAAATATATTTAAACAATAATATAGATTATTTACACT
15987545 AAAATAGTTAATTATATATATAAATTTATTTTTATTTTATTCTATTACTGTTGCTAAA
326 AAAATAGTTAATTATATATATAAATTTATTTTTATTTTATTCTATTACTGTTGCTAAA
**** * * *
15987603 ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATATATTTTTTTAAAATATATATTAGAA
1 A----------------------------AGATATATATCTTT---TTTAAAATATATATTAGAA
15987668 AATAAAAAAATATATAGATATGCAAGGTAAAAGATTTTGTATTATAAAGTTTAAATGTATGAAAA
35 AATAAAAAAATATATAGATATGCAAGGTAAAAGATTTTGTATTATAAAGTTTAAATGTATGAAAA
15987733 AATTAAAATAAAATTTTAGTTAAAGTGGTAAAAAAAGTTTATAGATGTTGGTGGTAATGATTCAA
100 AATTAAAATAAAATTTTAGTTAAAGTGGTAAAAAAAGTTTATAGATGTTGGTGGTAATGATTCAA
15987798 ATATTAATATTTGTAATTTTTTATCGATTTTTTATTAAAAAAAACACACACAAAAAAAACTCTCA
165 ATATTAATATTTGTAATTTTTTATCGATTTTTTATTAAAAAAAACACACACAAAAAAAACTCTCA
15987863 TGATAACACAACTTATTTTGAATATTTTAAGATTTTTTTTGACTAAATTAATGTCAAGTTAAATA
230 TGATAACACAACTTATTTTGAATATTTTAAGATTTTTTTTGACTAAATTAATGTCAAGTTAAATA
15987928 TATTTAAACAATAATATAGATTATTTACACTAAAATAGTTAATTATATATATAAATTTATTTTTA
295 TATTTAAACAATAATATAGATTATTTACACTAAAATAGTTAATTATATATATAAATTTATTTTTA
15987993 TTTTATTCTATTACTGTTGCTAAA
360 TTTTATTCTATTACTGTTGCTAAA
15988017 AA
1 AA
15988019 TTAAGGCTTT
Statistics
Matches: 377, Mismatches: 8, Indels: 59
0.85 0.02 0.13
Matches are distributed among these distances:
383 1 0.00
411 7 0.02
414 369 0.98
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.39
Consensus pattern (383 bp):
AAGATATATATCTTTTTTAAAATATATATTAGAAAATAAAAAAATATATAGATATGCAAGGTAAA
AGATTTTGTATTATAAAGTTTAAATGTATGAAAAAATTAAAATAAAATTTTAGTTAAAGTGGTAA
AAAAAGTTTATAGATGTTGGTGGTAATGATTCAAATATTAATATTTGTAATTTTTTATCGATTTT
TTATTAAAAAAAACACACACAAAAAAAACTCTCATGATAACACAACTTATTTTGAATATTTTAAG
ATTTTTTTTGACTAAATTAATGTCAAGTTAAATATATTTAAACAATAATATAGATTATTTACACT
AAAATAGTTAATTATATATATAAATTTATTTTTATTTTATTCTATTACTGTTGCTAAA
Found at i:15998860 original size:44 final size:45
Alignment explanation
Indices: 15998795--15998885 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
15998785 ACCTCTATTC
* * *
15998795 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
15998839 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
15998884 CA
1 CA
15998886 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:15998887 original size:16 final size:16
Alignment explanation
Indices: 15998866--15998917 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
15998856 GATTAGCTAT
15998866 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
15998882 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
15998898 TACAACTCTAATCCAA
1 TACACCTCTAATCCAA
15998914 TACA
1 TACA
15998918 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:16004302 original size:27 final size:28
Alignment explanation
Indices: 16004246--16004317 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 28
16004236 ATCATACTTA
* *
16004246 TATTTTTATTTTAT-ATT-TATTCATGC
1 TATTATTATTTTATCATTATATTCATAC
16004272 -ATTATTATTTTATCATTATATT-ATAC
1 TATTATTATTTTATCATTATATTCATAC
** *
16004298 TATTAGCATTGTATCATTAT
1 TATTATTATTTTATCATTAT
16004318 TATTTATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
25 12 0.32
26 6 0.16
27 20 0.53
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.58
Consensus pattern (28 bp):
TATTATTATTTTATCATTATATTCATAC
Found at i:16004661 original size:2 final size:2
Alignment explanation
Indices: 16004649--16004687 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
16004639 TAACTTTAAA
* *
16004649 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16004688 CATGCATTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:16004856 original size:26 final size:26
Alignment explanation
Indices: 16004798--16004859 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
16004788 ACGTATACTT
* **
16004798 ATATACATTTTATAATGCATATATGT
1 ATATATATTTTATAATGCATATATAC
* **
16004824 ACATATATTTTATAATTTATATATAC
1 ATATATATTTTATAATGCATATATAC
16004850 ATATATATTT
1 ATATATATTT
16004860 GTTATATTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.50
Consensus pattern (26 bp):
ATATATATTTTATAATGCATATATAC
Found at i:16004857 original size:28 final size:28
Alignment explanation
Indices: 16004791--16004865 Score: 66
Period size: 26 Copynumber: 2.8 Consensus size: 28
16004781 AAAATATACG
* *
16004791 TATACTTATATACATTTTATAATGCATA
1 TATACATATATATATTTTATAATGCATA
* * **
16004819 TAT--GTACATATATTTTATAATTTATA
1 TATACATATATATATTTTATAATGCATA
16004845 TATACATATATAT-TTGTTATA
1 TATACATATATATATT-TTATA
16004866 TTTTTGACAA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
26 21 0.57
27 2 0.05
28 14 0.38
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.51
Consensus pattern (28 bp):
TATACATATATATATTTTATAATGCATA
Found at i:16007273 original size:16 final size:16
Alignment explanation
Indices: 16007254--16007288 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
16007244 ATATGTAGGT
*
16007254 ATATAAAAATCATAAA
1 ATATAAAAATAATAAA
*
16007270 ATATGAAAATAATAAA
1 ATATAAAAATAATAAA
16007286 ATA
1 ATA
16007289 CATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (16 bp):
ATATAAAAATAATAAA
Found at i:16007473 original size:2 final size:2
Alignment explanation
Indices: 16007468--16007500 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
16007458 TTATAAAGAG
*
16007468 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16007501 ATAACTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16009098 original size:18 final size:18
Alignment explanation
Indices: 16009068--16009102 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
16009058 CGAATATAAT
16009068 AAATATTTATTTATTTTA
1 AAATATTTATTTATTTTA
16009086 AAATACTTT-TTTATTTT
1 AAATA-TTTATTTATTTT
16009103 TTATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (18 bp):
AAATATTTATTTATTTTA
Found at i:16009122 original size:25 final size:26
Alignment explanation
Indices: 16009071--16009122 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
16009061 ATATAATAAA
**
16009071 TATTTATTTATTTTAAAATACTTTTT
1 TATTTATTTATTTTAAAATACAATTT
16009097 TATTT-TTTATTTTAAAAATA-AATTT
1 TATTTATTTATTTT-AAAATACAATTT
16009122 T
1 T
16009123 TTGTGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (26 bp):
TATTTATTTATTTTAAAATACAATTT
Found at i:16009122 original size:26 final size:26
Alignment explanation
Indices: 16009071--16009123 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16009061 ATATAATAAA
**
16009071 TATTTATTTATTTTAAAATACTTTTT
1 TATTTATTTATTTTAAAATAAATTTT
16009097 TATTT-TTTATTTTAAAAATAAATTTT
1 TATTTATTTATTTT-AAAATAAATTTT
16009123 T
1 T
16009124 TGTGTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TATTTATTTATTTTAAAATAAATTTT
Found at i:16009131 original size:26 final size:25
Alignment explanation
Indices: 16009077--16009132 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
16009067 TAAATATTTA
* * *
16009077 TTTATTTTAAAATACTTTTTTATTT
1 TTTATTTTAAAATAATTTTTTAGTG
16009102 TTTATTTTAAAAATAAATTTTTT-GTG
1 TTTATTTT-AAAAT-AATTTTTTAGTG
16009128 TTTAT
1 TTTAT
16009133 AAAAATGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 8 0.31
26 11 0.42
27 7 0.27
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (25 bp):
TTTATTTTAAAATAATTTTTTAGTG
Found at i:16010336 original size:75 final size:76
Alignment explanation
Indices: 16010236--16010387 Score: 288
Period size: 75 Copynumber: 2.0 Consensus size: 76
16010226 AAAATTACAA
16010236 GTCTTGCGACTAGAGGTGCTCATGGGCCGGGCCGGAAATGGGAGGGTTTGGGTAAAAATATAGGC
1 GTCTTGCGAC-AGAGGTGCTCATGGGCCGGGCCGGAAATGGGAGGGTTTGGGTAAAAATATAGGC
16010301 CCGAAATATGGG
65 CCGAAATATGGG
16010313 GTCTTGCGAC-GAGGTGCTCATGGGCCGGGCCGGAAATGGGAGGGTTTGGGTAAAAATATAGGCC
1 GTCTTGCGACAGAGGTGCTCATGGGCCGGGCCGGAAATGGGAGGGTTTGGGTAAAAATATAGGCC
16010377 CGAAATATGGG
66 CGAAATATGGG
16010388 CTTGGGAAAA
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
75 65 0.87
77 10 0.13
ACGTcount: A:0.24, C:0.16, G:0.39, T:0.20
Consensus pattern (76 bp):
GTCTTGCGACAGAGGTGCTCATGGGCCGGGCCGGAAATGGGAGGGTTTGGGTAAAAATATAGGCC
CGAAATATGGG
Found at i:16012471 original size:40 final size:40
Alignment explanation
Indices: 16012395--16012535 Score: 212
Period size: 40 Copynumber: 3.5 Consensus size: 40
16012385 AAATATATTT
* * *
16012395 ATTTTTTAAATTTTAAAATATTTTTTACATAC-TTTTTTA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTA
*
16012434 ATTTTTTTTATTTTAAAATATTTTTAAAATACTTTTTTTA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTA
16012474 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTA
*
16012514 ATTTTTTAAAATTTTTAAAATA
1 ATTTTTT-TAA-TTTTAAAATA
16012536 AAAATGGGCT
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 28 0.30
40 53 0.57
41 2 0.02
42 10 0.11
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (40 bp):
ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTA
Found at i:16012513 original size:31 final size:31
Alignment explanation
Indices: 16012475--16012535 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
16012465 CTTTTTTTAA
16012475 TTTTTTTAA-TTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTTAAAA-ATTTTTAAAATAC
*
16012506 TTTTTTTAATTTTTTAAAATTTTTAAAATA
1 TTTTTTTAATTTTTAAAAATTTTTAAAATA
16012536 AAAATGGGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (31 bp):
TTTTTTTAATTTTTAAAAATTTTTAAAATAC
Found at i:16013327 original size:111 final size:111
Alignment explanation
Indices: 16013018--16013777 Score: 680
Period size: 111 Copynumber: 6.8 Consensus size: 111
16013008 AAAAAAAAAA
* *
16013018 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATAC-AAAAGATTCAAAAAAAAAATTTTTTGT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTC---AAAAAAATTTTTTTT
* * * *********
16013082 TGGTGGTGGCCTGTCAATGGCCGGCATCATCTTTATGTAAAAAAAAAAAGAA
63 TGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGT---AATTTTTTTTT
* * * **** *
16013134 TTACATTTTGGGCTGTCATTGGCCGGTACCGGTATACGAAAAAATTCAAAAAAA---AAAGTTGA
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATTTTTTTTTGG
16013196 TGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAATTTTTTTTT
66 TGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAATTTTTTTTT
* * * *
16013242 TTACATTTTGGGCTGTTATTGGCCGGCACCAATATACAAAAAAATTCAGAGAAATTTTTTTTTGG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATTTTTTTTTGG
* * * ***** ***
16013307 TAGTGGCCTGCTAATGGCCGGCACTACCTTTATGTAAAAAAATAAA
66 TGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAATTTTTTTTT
* * * * * * * *
16013353 TTACATTTTGGGCTGTCATTAGTCGGTATCAGTATAC-GAAAAATTCAAAAAAAATTTATTTTAG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATTTTTTTTTGG
*
16013417 TGGTGGCCTG-CATATTGCCGGCACCACCTTTATGTAA-TTTTTTTT
66 TGGTGGCCTGCCA-ATGGCCGGCACCACCTTTATGTAATTTTTTTTT
* * *
16013462 TTACATTTTGGGTTGTCATTGGCTGGCACCAGTATACGAAAAAATT-AAAAAAATATATTTTTTT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAAT-T-TTTTTTT
* * *
16013526 GGTGGTGGCCTACCAATGACCGGCACCACCTGTATGTAAATTTTTTTTT
64 GGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGT-AATTTTTTTTT
** *
16013575 TTACATTTTGGGCTGTCATTGGTTGGCACCAGTACA-AGAAAAAATTCAAAAAAAATTTAGTTTT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACA-AAAAAATTC-AAAAAAATTT--TTTT
******
16013639 TTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAA--AAAAAAT
62 TTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAATTTTTTTTT
* * ****
16013687 TTACATTTTGGGTTGTCATTGACCGGCACCAGTATACAAAAAAAATTCAAAAAAA-AAACTTTTG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATAC-AAAAAAATTCAAAAAAATTTTTTTTTG
* *
16013751 GTGGTAGCCTGCCAATGGCCGACACCA
65 GTGGTGGCCTGCCAATGGCCGGCACCA
16013778 AATTTATCAA
Statistics
Matches: 523, Mismatches: 103, Indels: 43
0.78 0.15 0.06
Matches are distributed among these distances:
108 49 0.09
109 70 0.13
110 60 0.11
111 140 0.27
112 43 0.08
113 59 0.11
114 11 0.02
115 48 0.09
116 35 0.07
117 8 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (111 bp):
TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATTTTTTTTTGG
TGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAATTTTTTTTT
Found at i:16013526 original size:221 final size:223
Alignment explanation
Indices: 16013018--16013771 Score: 829
Period size: 221 Copynumber: 3.4 Consensus size: 223
16013008 AAAAAAAAAA
* *
16013018 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATAC-AAAAGATTCAAAAAAA-AAATTTTTTG
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATATA-TTTTT-
* *
16013081 TTGGTGGTGGCCTG-TCAATGGCCGGCA-TCATCTTTATGTAAAAAAAAAAAGAATTACATTTTG
64 TTGGTGGTGGCCTGCT-AATGGCCGGCACT-ACCTTTATGT--AAAAAAATA-AATTACATTTTG
* * * * *
16013144 GGCTGTCATTGGCCGGTACCGGTATACGAAAAAATTCAAAAAAAA--AAGTTGA-TGGTGGCCTG
124 GGCTGTCATTGGTCGGTACCAGTATACGAAAAAATTCAAAAAAAATTTATTTTAGTGGTGGCCTG
16013206 CCAATGGCCGGCACCACCTTTATGTAATTTTTTTTT
189 CCAATGGCCGGCACCACCTTTATGTAA-TTTTTTTT
* * * *
16013242 TTACATTTTGGGCTGTTATTGGCCGGCACCAATATACAAAAAAATTCAGAGAAAT-T-TTTTTTT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATATATTTTTTT
*
16013305 GGTAGTGGCCTGCTAATGGCCGGCACTACCTTTATGTAAAAAAATAAATTACATTTTGGGCTGTC
66 GGTGGTGGCCTGCTAATGGCCGGCACTACCTTTATGTAAAAAAATAAATTACATTTTGGGCTGTC
* * *
16013370 ATTAGTCGGTATCAGTATACG-AAAAATTCAAAAAAAATTTATTTTAGTGGTGGCCTG-CATATT
131 ATTGGTCGGTACCAGTATACGAAAAAATTCAAAAAAAATTTATTTTAGTGGTGGCCTGCCA-ATG
16013433 GCCGGCACCACCTTTATGTAATTTTTTTT
195 GCCGGCACCACCTTTATGTAATTTTTTTT
* * *
16013462 TTACATTTTGGGTTGTCATTGGCTGGCACCAGTATACGAAAAAATT-AAAAAAATATATTTTTTT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATATATTTTTTT
* * * * * **** ***
16013526 GGTGGTGGCCTACCAATGACCGGCACCACCTGTATGTAAATTTTTTTTTTTACATTTTGGGCTGT
66 GGTGGTGGCCTGCTAATGGCCGGCACTACCTTTATGTAAA-AAAATAAATTACATTTTGGGCTGT
* * * * *
16013591 CATTGGTTGGCACCAGTACAAGAAAAAATTCAAAAAAAATTTAGTTTTTTGGTGGTGGCCTGCCA
130 CATTGGTCGGTACCAGTATACGAAAAAATTCAAAAAAAATTTA---TTTTAGTGGTGGCCTGCCA
******
16013656 ATGGCCGGCACCACCTTTATGTAA-AAAAAAT
192 ATGGCCGGCACCACCTTTATGTAATTTTTTTT
* * **
16013687 TTACATTTTGGGTTGTCATTGACCGGCACCAGTATACAAAAAAAATTCAAAAAAA-A-A-ACTTT
1 TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATAC-AAAAAAATTCAAAAAAATATATTTTTT
* *
16013749 TGGTGGTAGCCTGCCAATGGCCG
65 TGGTGGTGGCCTGCTAATGGCCG
16013772 ACACCAAATT
Statistics
Matches: 453, Mismatches: 59, Indels: 36
0.83 0.11 0.07
Matches are distributed among these distances:
218 16 0.04
219 42 0.09
220 64 0.14
221 74 0.16
222 66 0.15
223 27 0.06
224 58 0.13
225 50 0.11
226 47 0.10
227 9 0.02
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (223 bp):
TTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACAAAAAAATTCAAAAAAATATATTTTTTT
GGTGGTGGCCTGCTAATGGCCGGCACTACCTTTATGTAAAAAAATAAATTACATTTTGGGCTGTC
ATTGGTCGGTACCAGTATACGAAAAAATTCAAAAAAAATTTATTTTAGTGGTGGCCTGCCAATGG
CCGGCACCACCTTTATGTAATTTTTTTT
Found at i:16014687 original size:43 final size:43
Alignment explanation
Indices: 16014583--16014833 Score: 240
Period size: 43 Copynumber: 5.9 Consensus size: 43
16014573 TTTTTAAAAT
* * * * ** *
16014583 AAACGCCGCCAAAGGTCATGGCTTTTAGCGGCGC-TTTCAGAA
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
16014625 AAACGCCACTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAC
* **
16014668 AAACGCCGCTATAGGCCATGACCTTTATTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
16014711 AAATGCCGCTAAAGGCCATGACCTTTAGTGGCGCTTTTCCCAA
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAC
* * * * * *
16014754 AAACGCTGCTAAAGGCTATGACCTTTAGCGACGCTTCTACAAC
1 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAC
* *
16014797 AAACGCCACAATAAA-G--ATGACTTTTAGCGGCGCTTTT
1 AAACGCCGC--TAAAGGCCATGACCTTTAGCGGCGCTTTT
16014834 TAACGAACGC
Statistics
Matches: 174, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
42 45 0.26
43 124 0.71
44 1 0.01
45 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:16014858 original size:41 final size:42
Alignment explanation
Indices: 16014771--16014863 Score: 109
Period size: 41 Copynumber: 2.2 Consensus size: 42
16014761 GCTAAAGGCT
* *
16014771 ATGACCTTTAGCGACGCTTCTACAACAAACGCCACAATAAAG
1 ATGACTTTTAGCGACGCTTCTACAACAAACGCCACAATAAAC
* ** *
16014813 ATGACTTTTAGCGGCGCTT-TTTAACGAACGCCACTAA-AAAC
1 ATGACTTTTAGCGACGCTTCTACAACAAACGCCAC-AATAAAC
16014854 ATGACTTTTA
1 ATGACTTTTA
16014864 AAAAAATATT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 25 0.57
42 19 0.43
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (42 bp):
ATGACTTTTAGCGACGCTTCTACAACAAACGCCACAATAAAC
Found at i:16017566 original size:22 final size:21
Alignment explanation
Indices: 16017499--16017575 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 21
16017489 GATTATGTAT
** *
16017499 AATTAACATATAAAATAGTACA
1 AATTAA-ATATAAAATAAAAAA
16017521 AATTAAA-ACT-AAA-AAAAAA
1 AATTAAATA-TAAAATAAAAAA
*
16017540 TATTAACATATAAAATAAAAAA
1 AATTAA-ATATAAAATAAAAAA
*
16017562 AATTAAATAAAAAA
1 AATTAAATATAAAA
16017576 GTTTTTCTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
19 8 0.18
20 6 0.14
21 13 0.30
22 17 0.39
ACGTcount: A:0.70, C:0.05, G:0.01, T:0.23
Consensus pattern (21 bp):
AATTAAATATAAAATAAAAAA
Found at i:16022417 original size:53 final size:53
Alignment explanation
Indices: 16022335--16022450 Score: 178
Period size: 53 Copynumber: 2.2 Consensus size: 53
16022325 ATATTCTTGT
* *
16022335 AAAAACAAATTTGCATTGAAAATAGAAAATTTAAATATAAAATGAAATGAGAA
1 AAAAATAAATTTCCATTGAAAATAGAAAATTTAAATATAAAATGAAATGAGAA
* * **
16022388 AAAAATAAATTTCCATTGGAAATATAAAATTTAAATATAAAATGAAATGAGGT
1 AAAAATAAATTTCCATTGAAAATAGAAAATTTAAATATAAAATGAAATGAGAA
16022441 AAAAATAAAT
1 AAAAATAAAT
16022451 GTTCTCAGGC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.27
Consensus pattern (53 bp):
AAAAATAAATTTCCATTGAAAATAGAAAATTTAAATATAAAATGAAATGAGAA
Found at i:16022991 original size:26 final size:26
Alignment explanation
Indices: 16022962--16023045 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
16022952 GTAGAAAAAT
16022962 AAAATTGAAATAAATGAGATTGAATG
1 AAAATTGAAATAAATGAGATTGAATG
*** *** * *
16022988 AAAAAAAAAAGGTATTAGATAGAAAAAT-
1 AAAATTGAAATAAATGAGATTG---AATG
16023016 AAAATTGAAATAAATGAGATTGAATG
1 AAAATTGAAATAAATGAGATTGAATG
16023042 AAAA
1 AAAA
16023046 AAAGGGTGTT
Statistics
Matches: 38, Mismatches: 16, Indels: 8
0.61 0.26 0.13
Matches are distributed among these distances:
25 3 0.08
26 18 0.47
28 14 0.37
29 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.17, T:0.23
Consensus pattern (26 bp):
AAAATTGAAATAAATGAGATTGAATG
Found at i:16022993 original size:28 final size:28
Alignment explanation
Indices: 16022962--16023047 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 28
16022952 GTAGAAAAAT
16022962 AAAATTGAAATAAATGAGATTGAATGAA
1 AAAATTGAAATAAATGAGATTGAATGAA
* *** * * *
16022990 AAAA--AAAAGGTATTAGATAGAA-AAA
1 AAAATTGAAATAAATGAGATTGAATGAA
16023015 TAAAATTGAAATAAATGAGATTGAATGAA
1 -AAAATTGAAATAAATGAGATTGAATGAA
16023044 AAAA
1 AAAA
16023048 AGGGTGTTAG
Statistics
Matches: 40, Mismatches: 14, Indels: 8
0.65 0.23 0.13
Matches are distributed among these distances:
25 2 0.05
26 16 0.40
28 20 0.50
29 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.16, T:0.22
Consensus pattern (28 bp):
AAAATTGAAATAAATGAGATTGAATGAA
Found at i:16023159 original size:56 final size:56
Alignment explanation
Indices: 16022656--16023162 Score: 765
Period size: 56 Copynumber: 9.1 Consensus size: 56
16022646 TAAAAAAACC
* *
16022656 AAAAAAAGGTGTTAGATGTAGAAAAATAAAATTGAAATAAATGAGATTGAATGAAA
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
**
16022712 AGAAATCA-GTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
1 A-AAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
*
16022768 AAAAATAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
*
16022824 AAAAATAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
** *
16022880 AAAAATGGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTTAATG-AA
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
** * *
16022935 AAAAATGGGTGTTAGATGTAGAAAAATAAAATTGAAATAAATGAGATTGAATGAAA
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
* * *
16022991 AAAAAAAGGTATTAGA--TAGAAAAATAAAATTGAAATAAATGAGATTGAATG--A
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
* * * * * *
16023043 AAAAAAGGGTGTTAGATGTAAAAAAATAAATTTGAAATGAATGGGATTGAATGAAA
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
16023099 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
1 AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
16023155 AAAAAAAG
1 AAAAAAAG
16023163 TGTCAAATGA
Statistics
Matches: 418, Mismatches: 26, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
52 15 0.04
54 66 0.16
55 56 0.13
56 277 0.66
57 4 0.01
ACGTcount: A:0.54, C:0.00, G:0.21, T:0.25
Consensus pattern (56 bp):
AAAAAAAGGTGTTAGATGTAGAAAAATAAAGTTGTAATAAATGAGATTGAATGAAA
Found at i:16024557 original size:108 final size:107
Alignment explanation
Indices: 16024312--16024874 Score: 682
Period size: 108 Copynumber: 5.3 Consensus size: 107
16024302 ATCCTTCACG
* **** * *
16024312 GTATACTGGTGCCGGCCAATGACAGCCCCAAATGT----ATTTTTTTACATAAAGGTGATGCCGA
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTGGTGCCGG
16024373 CCATTGGCAGGCCACCACCAAAATTATTTTTTTTGAATTTTTTC
66 CCATTGGCAGGCCACCACCAAAA-T-TTTTTTTTGAATTTTTTC
* * *
16024417 GTATACTGGTACCGGCCAATGACAGCCCAAAATGTAAAAAAAAAATTTACATAAAGGTGTTGTCG
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGT-AAAAAAAAATTTACATAAAGGTGGTGCCG
* **
16024482 GCCATTGGCAGGCCACGACCAATTTTTTTTTTTGAATTTTTTC
65 GCCATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
* * *
16024525 GTATATTGGTGCCGGCCAATGACAGCCTAAAATGTAAAAAAAAAATTTACATAAAGGTGGTGCCA
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGT-AAAAAAAAATTTACATAAAGGTGGTGCCG
16024590 GCCATTGGCAGGCCACCA-CAAAATTTTTTTTTGAA-TTTTTC
65 GCCATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
** ****** *
16024631 GTATACTGGTGCCAACCAATGACAGCCCAAAATGT-AATTTTTTTTTACATAAAGGTGGTGCCAG
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTGGTGCCGG
*
16024695 CCATTGGCAGGCCATCA-C-AAATTTTTTTTT-AATTTTTTC
66 CCATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
* ***** * *
16024734 GTATACTGGTGCCGGCCAATGACAACCCAAAATGT--AATTTTTTTTATATAAAGGTGGTGTCGG
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTGGTGCCGG
*
16024797 CCATTAGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
66 CCATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
*
16024839 GTATACTGGTGCCGGCCAATGACAGCTCAAAATGTA
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTA
16024875 CCTTTTTTTA
Statistics
Matches: 405, Mismatches: 43, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
102 41 0.10
103 51 0.13
104 52 0.13
105 75 0.19
106 37 0.09
107 15 0.04
108 94 0.23
109 1 0.00
110 39 0.10
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (107 bp):
GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTGGTGCCGG
CCATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
Found at i:16024693 original size:49 final size:49
Alignment explanation
Indices: 16024637--16024792 Score: 127
Period size: 49 Copynumber: 3.1 Consensus size: 49
16024627 TTTCGTATAC
*
16024637 TGGTGCCAACCAATGACAGCCCAAAATGTAATTTTTTTTTACATAAAGG
1 TGGTGCCAGCCAATGACAGCCCAAAATGTAATTTTTTTTTACATAAAGG
* * * ** * * * *
16024686 TGGTGCCAGCCATTGGCAGGCCATCACAAATTTTTTTTTAATTTTTTCGTATA-C
1 TGGTGCCAGCCAATGACA-GCC--CA-AAATGTAATTTT--TTTTTACATAAAGG
* * *
16024740 TGGTGCCGGCCAATGACAACCCAAAATGTAA-TTTTTTTTATATAAAGG
1 TGGTGCCAGCCAATGACAGCCCAAAATGTAATTTTTTTTTACATAAAGG
16024788 TGGTG
1 TGGTG
16024793 TCGGCCATTA
Statistics
Matches: 78, Mismatches: 22, Indels: 15
0.68 0.19 0.13
Matches are distributed among these distances:
47 8 0.10
48 5 0.06
49 18 0.23
50 8 0.10
51 2 0.03
52 2 0.03
53 11 0.14
54 15 0.19
55 9 0.12
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (49 bp):
TGGTGCCAGCCAATGACAGCCCAAAATGTAATTTTTTTTTACATAAAGG
Found at i:16024881 original size:105 final size:106
Alignment explanation
Indices: 16024312--16024932 Score: 751
Period size: 105 Copynumber: 5.9 Consensus size: 106
16024302 ATCCTTCACG
* * *
16024312 GTATACTGGTGCCGGCCAATGACAGCCCCAAATGT---ATTTTTTTACATAAAGGTGATGCCGAC
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTACATAAAGGTGGTGCCGGC
16024374 CATTGGCAGGCCACCACCAAAATTATTTTTTTTGAATTTTTTC
66 CATTGGCAGGCCACCACCAAAA-T-TTTTTTTTGAATTTTTTC
* **** * *
16024417 GTATACTGGTACCGGCCAATGACAGCCCAAAATGTAAAAAAAAAATTTACATAAAGGTGTTGTCG
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGT--AAAATTTTTTTACATAAAGGTGGTGCCG
* **
16024482 GCCATTGGCAGGCCACGACCAATTTTTTTTTTTGAATTTTTTC
64 GCCATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
* * **** *
16024525 GTATATTGGTGCCGGCCAATGACAGCCTAAAATGTAAAAAAAAAATTTACATAAAGGTGGTGCCA
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGT--AAAATTTTTTTACATAAAGGTGGTGCCG
16024590 GCCATTGGCAGGCCACCA-CAAAATTTTTTTTTGAA-TTTTTC
64 GCCATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
** ** *
16024631 GTATACTGGTGCCAACCAATGACAGCCCAAAATGTAATTTTTTTTTACATAAAGGTGGTGCCAGC
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTACATAAAGGTGGTGCCGGC
*
16024696 CATTGGCAGGCCATCA-C-AAATTTTTTTTT-AATTTTTTC
66 CATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
* * * *
16024734 GTATACTGGTGCCGGCCAATGACAACCCAAAATGT-AATTTTTTTTATATAAAGGTGGTGTCGGC
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTACATAAAGGTGGTGCCGGC
*
16024798 CATTAGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
66 CATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
* ** * *
16024839 GTATACTGGTGCCGGCCAATGACAGCTCAAAATGT-ACCTTTTTTTACATAAATGTGGTGCCGAC
1 GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTACATAAAGGTGGTGCCGGC
* * * *
16024903 CATTGACAGACCAGCACC-AATTTTTTTTTT
66 CATTGGCAGGCCACCACCAAAATTTTTTTTT
16024933 CTTTTTTTCC
Statistics
Matches: 453, Mismatches: 54, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
102 41 0.09
103 51 0.11
104 63 0.14
105 112 0.25
106 37 0.08
107 15 0.03
108 94 0.21
109 1 0.00
110 39 0.09
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (106 bp):
GTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAATTTTTTTACATAAAGGTGGTGCCGGC
CATTGGCAGGCCACCACCAAAATTTTTTTTTGAATTTTTTC
Found at i:16025816 original size:12 final size:12
Alignment explanation
Indices: 16025799--16025831 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
16025789 TTAAAGTATA
16025799 AAAATTGAATTT
1 AAAATTGAATTT
16025811 AAAATTGAATTT
1 AAAATTGAATTT
16025823 AAAATTGAA
1 AAAATTGAA
16025832 GCATATTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (12 bp):
AAAATTGAATTT
Found at i:16027230 original size:36 final size:36
Alignment explanation
Indices: 16027176--16027247 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
16027166 CCGATCAAAC
*
16027176 AGACATAATTTTAAAACATTTCATATCATATAATAT
1 AGACATAATTTCAAAACATTTCATATCATATAATAT
*
16027212 AGACATAATTTCAGAACATTTCATATCATATAATAT
1 AGACATAATTTCAAAACATTTCATATCATATAATAT
16027248 TCAAGTCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (36 bp):
AGACATAATTTCAAAACATTTCATATCATATAATAT
Found at i:16028752 original size:41 final size:40
Alignment explanation
Indices: 16028638--16028781 Score: 107
Period size: 37 Copynumber: 3.6 Consensus size: 40
16028628 GTACCCAATA
* *
16028638 CCTCATCAGA-TAATTCGAAGTAATAATTTGACACCCAGTG
1 CCTCATC-GACTAATCCGAAGTAATAAATTGACACCCAGTG
* * * *
16028678 TCTCATCGGCTAAACCGAAG---TAAATTGGCACCCAGTG
1 CCTCATCGACTAATCCGAAGTAATAAATTGACACCCAGTG
* * * * *
16028715 CCTCTTCGAATTAATCCGAAGTAATAAATTGATACCCAATT
1 CCTCATCG-ACTAATCCGAAGTAATAAATTGACACCCAGTG
* *
16028756 TCTCATCGACTCAAATTCGAAGTAAT
1 CCTCATCGACT--AATCCGAAGTAAT
16028782 CCCTGAACTC
Statistics
Matches: 78, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
37 21 0.27
38 9 0.12
39 1 0.01
40 16 0.21
41 19 0.24
42 12 0.15
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (40 bp):
CCTCATCGACTAATCCGAAGTAATAAATTGACACCCAGTG
Found at i:16029299 original size:25 final size:25
Alignment explanation
Indices: 16029230--16029300 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 25
16029220 TATATTTACT
16029230 TATTATAATATT-TAATATA-AT-A
1 TATTATAATATTATAATATATATAA
* * *
16029252 TA-TATACT-TAATAATTAAGATATAA
1 TATTATAATATTATAA-T-ATATATAA
16029277 TATTATAATATTATAATATATATA
1 TATTATAATATTATAATATATATA
16029301 TTTTTAACTT
Statistics
Matches: 36, Mismatches: 6, Indels: 11
0.68 0.11 0.21
Matches are distributed among these distances:
20 1 0.03
21 8 0.22
22 3 0.08
23 2 0.06
24 2 0.06
25 9 0.25
26 6 0.17
27 5 0.14
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (25 bp):
TATTATAATATTATAATATATATAA
Found at i:16032456 original size:14 final size:15
Alignment explanation
Indices: 16032433--16032481 Score: 55
Period size: 14 Copynumber: 3.2 Consensus size: 15
16032423 TAATTATAAC
16032433 TATTTAAATAA-TAT
1 TATTTAAATAATTAT
*
16032447 TATTTGAATAATTAT
1 TATTTAAATAATTAT
*
16032462 TATATTAAATGAATAAT
1 TAT-TTAAAT-AATTAT
16032479 TAT
1 TAT
16032482 GTGTTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
14 10 0.34
15 6 0.21
16 5 0.17
17 8 0.28
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (15 bp):
TATTTAAATAATTAT
Found at i:16034233 original size:2 final size:2
Alignment explanation
Indices: 16034226--16034251 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
16034216 TAGTAATTTG
16034226 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
16034252 TGTTTTCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16042796 original size:14 final size:13
Alignment explanation
Indices: 16042765--16042798 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
16042755 CTTCATACTA
16042765 ATTTTTTGAATAT
1 ATTTTTTGAATAT
16042778 ATTTTTTGAAT-T
1 ATTTTTTGAATAT
*
16042790 ATCTTTTGA
1 ATTTTTTGA
16042799 GGTGACATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (13 bp):
ATTTTTTGAATAT
Found at i:16045357 original size:2 final size:2
Alignment explanation
Indices: 16045350--16045386 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
16045340 ACTATTGCTC
16045350 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
16045387 AACTTTACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:16076687 original size:15 final size:15
Alignment explanation
Indices: 16076667--16076700 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
16076657 ACATTTATAC
16076667 TTTAATT-TAATTATT
1 TTTAATTCTAA-TATT
16076682 TTTAATTCTAATATT
1 TTTAATTCTAATATT
16076697 TTTA
1 TTTA
16076701 GAATTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.83
16 3 0.17
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTAATTCTAATATT
Found at i:16079293 original size:25 final size:27
Alignment explanation
Indices: 16079265--16079315 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
16079255 AGAGACATTT
16079265 TATT-GTTAAGT-TACAT-TTATTTTAG
1 TATTAGTTAAGTATACATATT-TTTTAG
*
16079290 TATTATTTAAGTATACATATTTTTTA
1 TATTAGTTAAGTATACATATTTTTTA
16079316 AAATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 4 0.18
26 6 0.27
27 10 0.45
28 2 0.09
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (27 bp):
TATTAGTTAAGTATACATATTTTTTAG
Found at i:16081084 original size:14 final size:14
Alignment explanation
Indices: 16081067--16081103 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
16081057 TACAGAATCA
*
16081067 AAGGTTTAGGGTCT
1 AAGGTTTAAGGTCT
*
16081081 AAGGTCTAAGGTCT
1 AAGGTTTAAGGTCT
16081095 AAGGTTTAA
1 AAGGTTTAA
16081104 TTTCAAGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.32
Consensus pattern (14 bp):
AAGGTTTAAGGTCT
Found at i:16083207 original size:37 final size:37
Alignment explanation
Indices: 16083166--16083240 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
16083156 CATGGCATGG
16083166 AGCCTAATGTTATCACGTACAATATATGTATCGATGC
1 AGCCTAATGTTATCACGTACAATATATGTATCGATGC
16083203 AGCCTAATGTTATCACGTACAATATATGTATCGATGC
1 AGCCTAATGTTATCACGTACAATATATGTATCGATGC
16083240 A
1 A
16083241 TGTTACAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (37 bp):
AGCCTAATGTTATCACGTACAATATATGTATCGATGC
Found at i:16083231 original size:19 final size:19
Alignment explanation
Indices: 16083172--16083231 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
16083162 ATGGAGCCTA
16083172 ATGTTATCACGTACAATAT
1 ATGTTATCACGTACAATAT
* * *
16083191 ATG-TATCGATGCAGC-CTA-
1 ATGTTATC-ACGTA-CAATAT
16083209 ATGTTATCACGTACAATAT
1 ATGTTATCACGTACAATAT
16083228 ATGT
1 ATGT
16083232 ATCGATGCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
17 1 0.03
18 12 0.40
19 16 0.53
20 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGTTATCACGTACAATAT
Found at i:16083823 original size:103 final size:103
Alignment explanation
Indices: 16083644--16083963 Score: 631
Period size: 103 Copynumber: 3.1 Consensus size: 103
16083634 AAACCGAAAA
16083644 AATTCGGTTAACCGATAGAATTAACCGAAAAAATTAGGTTCGGTTAATTTTTTTGAAAAAAACTT
1 AATTCGGTTAACCGATAGAATTAACCGAAAAAATTAGGTTCGGTTAATTTTTTTGAAAAAAACTT
16083709 CGGTTTGGTTAACGGTTAAAGATTTTGAAAGGTCGGTT
66 CGGTTTGGTTAACGGTTAAAGATTTTGAAAGGTCGGTT
16083747 AATTCGGTTAACCGATAGAATTAACCGAAAAAATTAGGTTCGGTTAATTTTTTTGAAAAAAACTT
1 AATTCGGTTAACCGATAGAATTAACCGAAAAAATTAGGTTCGGTTAATTTTTTTGAAAAAAACTT
16083812 CGGTTTGGTTAACGGTTAAAGATTTTGAAAGGTCGGTT
66 CGGTTTGGTTAACGGTTAAAGATTTTGAAAGGTCGGTT
*
16083850 AATTCGGTTAACCGATAGAATTAACCGAAAAAATTAGGTTCGGTTAATTTTTTTGAAAAAAATTT
1 AATTCGGTTAACCGATAGAATTAACCGAAAAAATTAGGTTCGGTTAATTTTTTTGAAAAAAACTT
16083915 CGGTTTGGTTAACGGTTAAAGATTTTGAAAGGTCGGTT
66 CGGTTTGGTTAACGGTTAAAGATTTTGAAAGGTCGGTT
16083953 AATTCGGTTAA
1 AATTCGGTTAA
16083964 TGTTATTTCG
Statistics
Matches: 216, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 216 1.00
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.35
Consensus pattern (103 bp):
AATTCGGTTAACCGATAGAATTAACCGAAAAAATTAGGTTCGGTTAATTTTTTTGAAAAAAACTT
CGGTTTGGTTAACGGTTAAAGATTTTGAAAGGTCGGTT
Found at i:16087677 original size:7 final size:7
Alignment explanation
Indices: 16087665--16087690 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
16087655 NTGTTAAGTA
16087665 TATATAT
1 TATATAT
16087672 TATATAT
1 TATATAT
16087679 TATATAT
1 TATATAT
16087686 TATAT
1 TATAT
16087691 TATAATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TATATAT
Found at i:16087707 original size:8 final size:8
Alignment explanation
Indices: 16087694--16087719 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
16087684 ATTATATTAT
16087694 AATAAAGA
1 AATAAAGA
16087702 AATAAAGA
1 AATAAAGA
16087710 AATAAAGA
1 AATAAAGA
16087718 AA
1 AA
16087720 AAGAATTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AATAAAGA
Found at i:16087770 original size:4 final size:4
Alignment explanation
Indices: 16087761--16087791 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
16087751 AACAGAAAGG
*
16087761 GAAA GAAA GAAA AAAA GAAA GAAA GAAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
16087792 GGAGACGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:16088712 original size:41 final size:40
Alignment explanation
Indices: 16088667--16088802 Score: 120
Period size: 40 Copynumber: 3.5 Consensus size: 40
16088657 TGACTTCGAG
*
16088667 TCGATGAGACATTGGGTGTCAATTTATTACTTCAGATTAA
1 TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
* * * * * *
16088707 TTCGATGAGGCACTGGGCGCCAA--T-TCACTTCGGTTTAA
1 -TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
* *
16088745 CCGATGAGACACTGGGTGTCAATTTATTACTT-TGAATT-A
1 TCGATGAGACACTGGGTGTCAATTTATTACTTCAG-ATTAA
*
16088784 TCCGATGAGGCACTGGGTG
1 T-CGATGAGACACTGGGTG
16088803 CCAAACTGGT
Statistics
Matches: 74, Mismatches: 16, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
37 18 0.24
38 11 0.15
39 4 0.05
40 23 0.31
41 18 0.24
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
Found at i:16088768 original size:37 final size:38
Alignment explanation
Indices: 16088668--16088768 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 38
16088658 GACTTCGAGT
* * *
16088668 CGATGAGACATTGGGTGTCAATTTATTACTTCAGATTAATT
1 CGATGAGACACTGGGTGTCAA--T-TCACTTCAGATTAATC
* * * * *
16088709 CGATGAGGCACTGGGCGCCAATTCACTTCGGTTTAA-C
1 CGATGAGACACTGGGTGTCAATTCACTTCAGATTAATC
16088746 CGATGAGACACTGGGTGTCAATT
1 CGATGAGACACTGGGTGTCAATT
16088769 TATTACTTTG
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
37 20 0.41
38 11 0.22
39 1 0.02
41 17 0.35
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAATTCACTTCAGATTAATC
Found at i:16090980 original size:15 final size:16
Alignment explanation
Indices: 16090960--16090990 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
16090950 AAAAGTTCTA
16090960 AAAAAAATA-AAAATT
1 AAAAAAATATAAAATT
16090975 AAAAAAATATAAAATT
1 AAAAAAATATAAAATT
16090991 TGAAGAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAAAATATAAAATT
Found at i:16098092 original size:26 final size:24
Alignment explanation
Indices: 16098049--16098099 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
16098039 ACGTTTATGA
16098049 TTTTTTAAATTTATAATTATATAT
1 TTTTTTAAATTTATAATTATATAT
* *
16098073 TTTTTTATAATTTTTAAATTATTTAT
1 TTTTTTA-AATTTAT-AATTATATAT
16098099 T
1 T
16098100 AACGTGACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 6 0.26
26 10 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTTTTAAATTTATAATTATATAT
Found at i:16099085 original size:23 final size:23
Alignment explanation
Indices: 16099041--16099086 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
16099031 ACATTGTTCG
* *
16099041 TGAACATGTTCGATTAAGTTAAA
1 TGAACATGTTCGATGAAATTAAA
16099064 TGAACATGTTCG-TGAATATTAAA
1 TGAACATGTTCGATGAA-ATTAAA
16099087 CAAACGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (23 bp):
TGAACATGTTCGATGAAATTAAA
Found at i:16099969 original size:67 final size:68
Alignment explanation
Indices: 16099864--16099997 Score: 173
Period size: 67 Copynumber: 2.0 Consensus size: 68
16099854 TATAACTTAT
* * * *
16099864 TTATATGTCCATGCTATATATTATAAAAACAATATACTTATTTACAAAATAATGTTTTA-GTTTT
1 TTATATGTCAATGCTATATATAATAAAAACAATATACTTATTTACAAAA-AATGGTATAGGTTTT
16099928 TTTA
65 TTTA
* * * *
16099932 TTATA-GTCAATGTTATATATAATAAAAATAATTTACTTATTTATAAAAAATGGTATAGGTTTTT
1 TTATATGTCAATGCTATATATAATAAAAACAATATACTTATTTACAAAAAATGGTATAGGTTTTT
16099996 TT
66 TT
16099998 TATCATAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
66 7 0.12
67 45 0.79
68 5 0.09
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.47
Consensus pattern (68 bp):
TTATATGTCAATGCTATATATAATAAAAACAATATACTTATTTACAAAAAATGGTATAGGTTTTT
TTA
Found at i:16110423 original size:155 final size:156
Alignment explanation
Indices: 16110228--16110540 Score: 619
Period size: 155 Copynumber: 2.0 Consensus size: 156
16110218 CAATAAATTA
16110228 TTTTTATTTTTCTACTAAAATATCATAATATTAATGAATTTGAAATTATTTAGAAAGATAACATC
1 TTTTTATTTTTCTACTAAAATATCATAATATTAATGAATTTGAAATTATTTAGAAAGATAACATC
16110293 AAGATTTATCCTTGTACTTTTAACAAAATTATCATTTCGATACCTGTACTTTCAATTTGTTCATT
66 AAGATTTATCCTTGTACTTTTAACAAAATTATCATTTCGATACCTGTACTTTCAATTTGTTCATT
16110358 TTAGTACATATACTTTTGTTAATTTG
131 TTAGTACATATACTTTTGTTAATTTG
16110384 TTTTTATTTTTC-ACTAAAATATCATAATATTAATGAATTTGAAATTATTTAGAAAGATAACATC
1 TTTTTATTTTTCTACTAAAATATCATAATATTAATGAATTTGAAATTATTTAGAAAGATAACATC
16110448 AAGATTTATCCTTGTACTTTTAACAAAATTATCATTTCGATACCTGTACTTTCAATTTGTTCATT
66 AAGATTTATCCTTGTACTTTTAACAAAATTATCATTTCGATACCTGTACTTTCAATTTGTTCATT
16110513 TTAGTACATATACTTTTGTTAATTTG
131 TTAGTACATATACTTTTGTTAATTTG
16110539 TT
1 TT
16110541 AACAAAAAAT
Statistics
Matches: 157, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
155 145 0.92
156 12 0.08
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.47
Consensus pattern (156 bp):
TTTTTATTTTTCTACTAAAATATCATAATATTAATGAATTTGAAATTATTTAGAAAGATAACATC
AAGATTTATCCTTGTACTTTTAACAAAATTATCATTTCGATACCTGTACTTTCAATTTGTTCATT
TTAGTACATATACTTTTGTTAATTTG
Found at i:16110621 original size:6 final size:6
Alignment explanation
Indices: 16110610--16110645 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
16110600 ATTTTATTTC
16110610 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
16110646 AAGGTAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:16122272 original size:45 final size:44
Alignment explanation
Indices: 16122217--16122305 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 44
16122207 TCAAGAAATC
* *
16122217 ACTATGTTCATGACCATGAGCAAAAATGTGATAGGTTAATTGATG
1 ACTAAGTTCATAACCATGAGCAAAAATGTGATAGGTT-ATTGATG
*
16122262 ACTAAGTTCATAAGCATGAGCAAAAATGTGATAGGTTATTGATG
1 ACTAAGTTCATAACCATGAGCAAAAATGTGATAGGTTATTGATG
16122306 CACACAAGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 7 0.17
45 34 0.83
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.30
Consensus pattern (44 bp):
ACTAAGTTCATAACCATGAGCAAAAATGTGATAGGTTATTGATG
Found at i:16124965 original size:14 final size:14
Alignment explanation
Indices: 16124946--16124979 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
16124936 ATTGTTTGAA
16124946 TCAAATATTAAAAT
1 TCAAATATTAAAAT
**
16124960 TCAAATATTGTAAT
1 TCAAATATTAAAAT
16124974 TCAAAT
1 TCAAAT
16124980 GTCAAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.09, G:0.03, T:0.38
Consensus pattern (14 bp):
TCAAATATTAAAAT
Found at i:16130279 original size:18 final size:18
Alignment explanation
Indices: 16130250--16130293 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
16130240 AAGAAAAGAT
*
16130250 GCTCGGACGGCTCAAAAG
1 GCTCGTACGGCTCAAAAG
*
16130268 GCTTGTACGGCTCAAAAG
1 GCTCGTACGGCTCAAAAG
16130286 GCTCGTAC
1 GCTCGTAC
16130294 AATGCCAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.30, T:0.18
Consensus pattern (18 bp):
GCTCGTACGGCTCAAAAG
Found at i:16130365 original size:43 final size:42
Alignment explanation
Indices: 16130295--16130453 Score: 194
Period size: 43 Copynumber: 3.7 Consensus size: 42
16130285 GGCTCGTACA
* * *
16130295 ATGCCAATGTCCCAGACGTGGTATTACATGTAATCAAATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAAT-ACG
* * *
16130338 ATGCCACTGTCCCAGACAAGGTCTTACACGTAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATACG
*
16130380 ACGCCAATGTCCCAGACATGGTCTTACACGTAGATCTTAAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTA-ATC--AAATACG
**
16130424 ATGCCAACATCCCAGACATGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
16130454 ATATCACATT
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
42 32 0.32
43 36 0.36
44 29 0.29
45 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATACG
Found at i:16133744 original size:33 final size:35
Alignment explanation
Indices: 16133707--16133778 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 35
16133697 CCCAAAATAT
* **
16133707 GGGCCTAAAATTTTGCCC-AGGCC-CCCATATTTC
1 GGGCCTAAAATTTTACCCGAACCCTCCCATATTTC
* *
16133740 GGGCCTATATTTTTACCCGAACCCTCCCATATTTC
1 GGGCCTAAAATTTTACCCGAACCCTCCCATATTTC
16133775 GGGC
1 GGGC
16133779 GGACCGTCGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 15 0.47
34 3 0.09
35 14 0.44
ACGTcount: A:0.19, C:0.33, G:0.18, T:0.29
Consensus pattern (35 bp):
GGGCCTAAAATTTTACCCGAACCCTCCCATATTTC
Found at i:16138741 original size:2 final size:2
Alignment explanation
Indices: 16138734--16138759 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
16138724 CTGGAATTCA
16138734 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
16138760 GTTGAATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16139047 original size:14 final size:14
Alignment explanation
Indices: 16139028--16139057 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
16139018 AATTTTCTGC
16139028 GATCTGTTTAGATG
1 GATCTGTTTAGATG
16139042 GATCTGTTTAGATG
1 GATCTGTTTAGATG
16139056 GA
1 GA
16139058 GAGTGAGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.30, T:0.40
Consensus pattern (14 bp):
GATCTGTTTAGATG
Found at i:16156968 original size:10 final size:9
Alignment explanation
Indices: 16156936--16156966 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
16156926 GTTTTATATA
16156936 TTTATAATTT
1 TTTA-AATTT
16156946 TTTAAATTT
1 TTTAAATTT
16156955 TTTAAATTT
1 TTTAAATTT
16156964 TTT
1 TTT
16156967 TAGAGTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTAAATTT
Found at i:16163548 original size:27 final size:27
Alignment explanation
Indices: 16163510--16163561 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
16163500 GCGGTGGCGC
16163510 ACGCCGCTGCTACTGCGAAATAGTGAT
1 ACGCCGCTGCTACTGCGAAATAGTGAT
16163537 ACGCCGCTGCTACTGCGAAATAGTG
1 ACGCCGCTGCTACTGCGAAATAGTG
16163562 GCTATTAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (27 bp):
ACGCCGCTGCTACTGCGAAATAGTGAT
Found at i:16166634 original size:18 final size:17
Alignment explanation
Indices: 16166606--16166640 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16166596 AATTATAAGA
*
16166606 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16166623 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16166641 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16166740 original size:156 final size:156
Alignment explanation
Indices: 16166456--16173617 Score: 14288
Period size: 156 Copynumber: 45.9 Consensus size: 156
16166446 TTATTTACTG
16166456 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16166521 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16166586 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16166612 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16166677 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16166742 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16166768 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16166833 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16166898 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16166924 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16166989 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16167054 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16167080 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16167145 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16167210 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16167236 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16167301 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16167366 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16167392 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16167457 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16167522 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16167548 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16167613 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16167678 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16167704 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16167769 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16167834 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16167860 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16167925 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16167990 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16168016 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16168081 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16168146 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16168172 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16168237 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16168302 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16168328 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16168393 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16168458 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16168484 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16168549 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16168614 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16168640 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16168705 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16168770 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16168796 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16168861 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16168926 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16168952 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16169017 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16169082 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16169108 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16169173 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16169238 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16169264 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16169329 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16169394 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16169420 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16169485 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16169550 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16169576 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16169641 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16169706 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16169732 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16169797 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16169862 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16169888 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16169953 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16170018 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16170044 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16170109 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16170174 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16170200 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16170265 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16170330 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16170356 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16170421 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16170486 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16170512 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16170577 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16170642 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16170668 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16170733 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16170798 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16170824 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16170889 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16170954 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16170980 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16171045 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16171110 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16171136 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16171201 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16171266 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16171292 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16171357 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16171422 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16171448 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16171513 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16171578 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16171604 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16171669 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16171734 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16171760 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16171825 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16171890 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16171916 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16171981 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16172046 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16172072 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16172137 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16172202 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16172228 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16172293 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16172358 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16172384 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16172449 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16172514 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16172540 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16172605 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16172670 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16172696 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16172761 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16172826 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16172852 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16172917 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16172982 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16173008 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16173073 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16173138 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16173164 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16173229 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16173294 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
16173320 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
16173385 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
16173450 ATTTTCTGCTAATTATAAGAATTTTA
131 ATTTTCTGCTAATTATAAGAATTTTA
*
16173476 TTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTTAAATATGATTAAAATATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
*
16173541 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTACCAAAACA
66 TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
* *
16173606 AATTTATGCTAA
131 ATTTTCTGCTAA
16173618 GGGTATTCTA
Statistics
Matches: 7002, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 7002 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (156 bp):
TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAAATATT
TATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACA
ATTTTCTGCTAATTATAAGAATTTTA
Found at i:16166790 original size:18 final size:17
Alignment explanation
Indices: 16166762--16166796 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16166752 AATTATAAGA
*
16166762 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16166779 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16166797 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16166946 original size:18 final size:17
Alignment explanation
Indices: 16166918--16166952 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16166908 AATTATAAGA
*
16166918 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16166935 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16166953 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16167102 original size:18 final size:17
Alignment explanation
Indices: 16167074--16167108 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16167064 AATTATAAGA
*
16167074 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16167091 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16167109 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16167258 original size:18 final size:17
Alignment explanation
Indices: 16167230--16167264 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16167220 AATTATAAGA
*
16167230 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16167247 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16167265 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16167414 original size:18 final size:17
Alignment explanation
Indices: 16167386--16167420 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16167376 AATTATAAGA
*
16167386 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16167403 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16167421 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16167570 original size:18 final size:17
Alignment explanation
Indices: 16167542--16167576 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16167532 AATTATAAGA
*
16167542 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16167559 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16167577 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16167726 original size:18 final size:17
Alignment explanation
Indices: 16167698--16167732 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16167688 AATTATAAGA
*
16167698 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16167715 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16167733 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16167882 original size:18 final size:17
Alignment explanation
Indices: 16167854--16167888 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16167844 AATTATAAGA
*
16167854 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16167871 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16167889 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16168038 original size:18 final size:17
Alignment explanation
Indices: 16168010--16168044 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16168000 AATTATAAGA
*
16168010 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16168027 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16168045 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16168194 original size:18 final size:17
Alignment explanation
Indices: 16168166--16168200 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16168156 AATTATAAGA
*
16168166 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16168183 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16168201 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16168350 original size:18 final size:17
Alignment explanation
Indices: 16168322--16168356 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16168312 AATTATAAGA
*
16168322 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16168339 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16168357 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16168506 original size:18 final size:17
Alignment explanation
Indices: 16168478--16168512 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16168468 AATTATAAGA
*
16168478 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16168495 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16168513 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16168662 original size:18 final size:17
Alignment explanation
Indices: 16168634--16168668 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16168624 AATTATAAGA
*
16168634 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16168651 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16168669 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16168818 original size:18 final size:17
Alignment explanation
Indices: 16168790--16168824 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16168780 AATTATAAGA
*
16168790 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16168807 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16168825 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16168974 original size:18 final size:17
Alignment explanation
Indices: 16168946--16168980 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16168936 AATTATAAGA
*
16168946 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16168963 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16168981 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16169130 original size:18 final size:17
Alignment explanation
Indices: 16169102--16169136 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16169092 AATTATAAGA
*
16169102 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16169119 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16169137 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16169286 original size:18 final size:17
Alignment explanation
Indices: 16169258--16169292 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16169248 AATTATAAGA
*
16169258 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16169275 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16169293 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16169442 original size:18 final size:17
Alignment explanation
Indices: 16169414--16169448 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16169404 AATTATAAGA
*
16169414 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16169431 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16169449 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16169598 original size:18 final size:17
Alignment explanation
Indices: 16169570--16169604 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16169560 AATTATAAGA
*
16169570 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16169587 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16169605 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16169754 original size:18 final size:17
Alignment explanation
Indices: 16169726--16169760 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16169716 AATTATAAGA
*
16169726 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16169743 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16169761 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16169910 original size:18 final size:17
Alignment explanation
Indices: 16169882--16169916 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16169872 AATTATAAGA
*
16169882 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16169899 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16169917 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16170066 original size:18 final size:17
Alignment explanation
Indices: 16170038--16170072 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16170028 AATTATAAGA
*
16170038 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16170055 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16170073 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16170222 original size:18 final size:17
Alignment explanation
Indices: 16170194--16170228 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16170184 AATTATAAGA
*
16170194 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16170211 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16170229 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16170378 original size:18 final size:17
Alignment explanation
Indices: 16170350--16170384 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16170340 AATTATAAGA
*
16170350 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16170367 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16170385 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16170534 original size:18 final size:17
Alignment explanation
Indices: 16170506--16170540 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16170496 AATTATAAGA
*
16170506 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16170523 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16170541 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16170690 original size:18 final size:17
Alignment explanation
Indices: 16170662--16170696 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16170652 AATTATAAGA
*
16170662 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16170679 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16170697 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16170846 original size:18 final size:17
Alignment explanation
Indices: 16170818--16170852 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16170808 AATTATAAGA
*
16170818 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16170835 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16170853 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16171002 original size:18 final size:17
Alignment explanation
Indices: 16170974--16171008 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16170964 AATTATAAGA
*
16170974 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16170991 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16171009 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16171158 original size:18 final size:17
Alignment explanation
Indices: 16171130--16171164 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16171120 AATTATAAGA
*
16171130 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16171147 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16171165 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16171314 original size:18 final size:17
Alignment explanation
Indices: 16171286--16171320 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16171276 AATTATAAGA
*
16171286 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16171303 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16171321 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16171470 original size:18 final size:17
Alignment explanation
Indices: 16171442--16171476 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16171432 AATTATAAGA
*
16171442 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16171459 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16171477 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16171626 original size:18 final size:17
Alignment explanation
Indices: 16171598--16171632 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16171588 AATTATAAGA
*
16171598 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16171615 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16171633 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16171782 original size:18 final size:17
Alignment explanation
Indices: 16171754--16171788 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16171744 AATTATAAGA
*
16171754 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16171771 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16171789 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16171938 original size:18 final size:17
Alignment explanation
Indices: 16171910--16171944 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16171900 AATTATAAGA
*
16171910 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16171927 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16171945 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16172094 original size:18 final size:17
Alignment explanation
Indices: 16172066--16172100 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16172056 AATTATAAGA
*
16172066 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16172083 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16172101 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16172250 original size:18 final size:17
Alignment explanation
Indices: 16172222--16172256 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16172212 AATTATAAGA
*
16172222 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16172239 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16172257 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16172406 original size:18 final size:17
Alignment explanation
Indices: 16172378--16172412 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16172368 AATTATAAGA
*
16172378 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16172395 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16172413 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16172562 original size:18 final size:17
Alignment explanation
Indices: 16172534--16172568 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16172524 AATTATAAGA
*
16172534 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16172551 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16172569 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16172718 original size:18 final size:17
Alignment explanation
Indices: 16172690--16172724 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16172680 AATTATAAGA
*
16172690 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16172707 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16172725 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16172874 original size:18 final size:17
Alignment explanation
Indices: 16172846--16172880 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16172836 AATTATAAGA
*
16172846 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16172863 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16172881 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16173030 original size:18 final size:17
Alignment explanation
Indices: 16173002--16173036 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16172992 AATTATAAGA
*
16173002 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16173019 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16173037 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16173186 original size:18 final size:17
Alignment explanation
Indices: 16173158--16173192 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16173148 AATTATAAGA
*
16173158 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16173175 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16173193 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16173342 original size:18 final size:17
Alignment explanation
Indices: 16173314--16173348 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16173304 AATTATAAGA
*
16173314 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16173331 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16173349 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16173498 original size:18 final size:18
Alignment explanation
Indices: 16173470--16173518 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
16173460 AATTATAAGA
16173470 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
16173487 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
16173503 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
16173519 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:16173504 original size:16 final size:16
Alignment explanation
Indices: 16173470--16173524 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
16173460 AATTATAAGA
16173470 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
16173487 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
16173503 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
16173517 ATGTTTAA
1 AT-TTTAA
16173525 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:16173695 original size:39 final size:40
Alignment explanation
Indices: 16173646--16173754 Score: 112
Period size: 44 Copynumber: 2.6 Consensus size: 40
16173636 AGTTTTTTCC
16173646 ATTATGCTATTACACCTCTATTCCATTCAACCAAACACAAG
1 ATTA-GCTATTACACCTCTATTCCATTCAACCAAACACAAG
* ***
16173687 ATTA-CTATTACGCCTCTATTTCATTACATTCAACCAAACAGTGG
1 ATTAGCTATTACACCTCTA-TTC----CATTCAACCAAACACAAG
*
16173731 ATTAGCTATTACACCTCTAATCCA
1 ATTAGCTATTACACCTCTATTCCA
16173755 ATACACCTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
39 13 0.23
40 5 0.09
41 4 0.07
44 21 0.38
45 13 0.23
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (40 bp):
ATTAGCTATTACACCTCTATTCCATTCAACCAAACACAAG
Found at i:16173761 original size:16 final size:16
Alignment explanation
Indices: 16173740--16173775 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
16173730 GATTAGCTAT
16173740 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
16173756 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
16173772 TACA
1 TACA
16173776 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:16179939 original size:28 final size:28
Alignment explanation
Indices: 16179908--16179976 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
16179898 TGTTTTAGTT
*
16179908 AATATATATTATATTTATT-TACTTAATA
1 AATATATATTATATTAATTATA-TTAATA
*
16179936 AATA-AGTATTATATTAATTATATTATTA
1 AATATA-TATTATATTAATTATATTAATA
*
16179964 TATAT-TATTATAT
1 AATATATATTATAT
16179977 ATAAAAAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
27 9 0.26
28 24 0.69
29 2 0.06
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (28 bp):
AATATATATTATATTAATTATATTAATA
Found at i:16179969 original size:10 final size:10
Alignment explanation
Indices: 16179945--16179978 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
16179935 AAATAAGTAT
*
16179945 TATATTAAT-
1 TATATTATTA
16179954 TATATTATTA
1 TATATTATTA
16179964 TATATTATTA
1 TATATTATTA
16179974 TATAT
1 TATAT
16179979 AAAAAACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TATATTATTA
Found at i:16181007 original size:41 final size:41
Alignment explanation
Indices: 16180960--16181039 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
16180950 TTGATGGTAC
* *
16180960 ATTGATT-GAAAAGTGGAAAATGTATTAGTATTGAATTGTAT
1 ATTGATTAG-AAAGTGGAAAATGAATTAGAATTGAATTGTAT
* *
16181001 ATTGATTAGAAAGTGGAAAGTGAATTTGAATTGAATTGT
1 ATTGATTAGAAAGTGGAAAATGAATTAGAATTGAATTGT
16181040 GATTGTGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 33 0.97
42 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.38
Consensus pattern (41 bp):
ATTGATTAGAAAGTGGAAAATGAATTAGAATTGAATTGTAT
Found at i:16188826 original size:14 final size:14
Alignment explanation
Indices: 16188807--16188834 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
16188797 AAATAACTAA
16188807 TAATGACCATATTG
1 TAATGACCATATTG
16188821 TAATGACCATATTG
1 TAATGACCATATTG
16188835 GTCATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
TAATGACCATATTG
Found at i:16202234 original size:6 final size:6
Alignment explanation
Indices: 16202225--16202252 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
16202215 ACTCTTTAGA
16202225 TTTATT TTTATT TTTATT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTA
16202253 ACTTACAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Done.