Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 77 of 131
Found at i:25692390 original size:145 final size:147
Alignment explanation
Indices: 25692241--25692533 Score: 556
Period size: 145 Copynumber: 2.0 Consensus size: 147
25692231 ATTTTATATT
25692241 AAATTATATTAAAAGATTATTTATTTTTATATTAAAATATTTAAAATATTTT-TTATAATACATT
1 AAATTATATTAAAAGATTATTTATTTTTATATTAAAATATTTAAAATATTTTATT-TAATACATT
25692305 TTAAAATAATACACTATTATTTGAATCCATTGCTTCTCAAATTATGTTCATTATAGTTGACACAC
65 TTAAAATAATACACTATTATTTGAATCCATTGCTTCTCAAATTATGTTCATTATAGTTGACACAC
25692370 AAC-AA-ACATTCTAAAA
130 AACAAATACATTCTAAAA
25692386 AAATTATATTAAAAGATTATTTATTTTTATATTAAAATATTTAAAATATTTTATTTAATACATTT
1 AAATTATATTAAAAGATTATTTATTTTTATATTAAAATATTTAAAATATTTTATTTAATACATTT
25692451 TAAAATAATACACTATTATTTGAATCCATTGCTTCTCAAATTATGTTCATTATAGTTGACACACA
66 TAAAATAATACACTATTATTTGAATCCATTGCTTCTCAAATTATGTTCATTATAGTTGACACACA
25692516 ACAAATACATTCTAAAA
131 ACAAATACATTCTAAAA
25692533 A
1 A
25692534 TTTAATTATT
Statistics
Matches: 145, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
145 129 0.89
146 4 0.03
147 12 0.08
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (147 bp):
AAATTATATTAAAAGATTATTTATTTTTATATTAAAATATTTAAAATATTTTATTTAATACATTT
TAAAATAATACACTATTATTTGAATCCATTGCTTCTCAAATTATGTTCATTATAGTTGACACACA
ACAAATACATTCTAAAA
Found at i:25702320 original size:21 final size:21
Alignment explanation
Indices: 25702294--25702333 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
25702284 ACTTTCTTGA
*
25702294 AAAACAAACTTAAAAATGGTG
1 AAAACAAACCTAAAAATGGTG
25702315 AAAACAAACCTAAAAATGG
1 AAAACAAACCTAAAAATGG
25702334 ACAAATCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.15
Consensus pattern (21 bp):
AAAACAAACCTAAAAATGGTG
Found at i:25704613 original size:20 final size:20
Alignment explanation
Indices: 25704588--25704625 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25704578 ATACAAATTA
25704588 TTATTCCTAGAAAATAAAAT
1 TTATTCCTAGAAAATAAAAT
* *
25704608 TTATTCTTGGAAAATAAA
1 TTATTCCTAGAAAATAAA
25704626 TTCGCACTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (20 bp):
TTATTCCTAGAAAATAAAAT
Found at i:25705047 original size:17 final size:17
Alignment explanation
Indices: 25705009--25705050 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
25704999 TGAATGTGAC
* *
25705009 TCATTTATCTAATTTTA
1 TCATTTCTCTAATTTCA
*
25705026 CCATTTCTCTAATTTCA
1 TCATTTCTCTAATTTCA
25705043 TCATTTCT
1 TCATTTCT
25705051 ATTCATTTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (17 bp):
TCATTTCTCTAATTTCA
Found at i:25714411 original size:25 final size:25
Alignment explanation
Indices: 25714383--25714432 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
25714373 GAAGGGTTGT
25714383 ATGGCTGGAGAATCTTAAGAATAAA
1 ATGGCTGGAGAATCTTAAGAATAAA
25714408 ATGGCTGGAGAATCTTAAGAATAAA
1 ATGGCTGGAGAATCTTAAGAATAAA
25714433 GGTGGTTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (25 bp):
ATGGCTGGAGAATCTTAAGAATAAA
Found at i:25722701 original size:2 final size:2
Alignment explanation
Indices: 25722694--25722720 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25722684 GGTTGTTTTA
25722694 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
25722721 ATNNNNNNNN
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25740859 original size:21 final size:21
Alignment explanation
Indices: 25740833--25740874 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
25740823 CTTATTAAAG
25740833 AGACTTAGTATACTTGGAAGT
1 AGACTTAGTATACTTGGAAGT
25740854 AGACTTAGTATACTTGGAAGT
1 AGACTTAGTATACTTGGAAGT
25740875 GACACCCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (21 bp):
AGACTTAGTATACTTGGAAGT
Found at i:25742928 original size:14 final size:15
Alignment explanation
Indices: 25742909--25742940 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25742899 GTGGTTATAG
25742909 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
25742923 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
25742938 TTA
1 TTA
25742941 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:25757283 original size:45 final size:45
Alignment explanation
Indices: 25757187--25757373 Score: 157
Period size: 45 Copynumber: 4.2 Consensus size: 45
25757177 TTGGAAATAT
* * * ** **
25757187 AGGTGGATGCTATGTGCTGATTCCAC-CTGATATTAATGAAAATAA
1 AGGTGGTTGCTATGTGCTGATTTCACAC-GGTACCAATGAGTATAA
* * *
25757232 AAGTGGTTGCTATGTGCTGATTTCA-ATGGATACCAATG-GTTATAT
1 AGGTGGTTGCTATGTGCTGATTTCACACGG-TACCAATGAG-TATAA
* * *
25757277 AGGTGGTTGCTATGTGCTGATTTCACCCGGTTCCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACACGGTACCAATGAGTATAA
* * *
25757322 AGGTGGTTGCTATGTGCTGATTTCAC-CGAGTACTATTGACTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACACG-GTACCAATGAGTATAA
*
25757367 GGGTGGT
1 AGGTGGT
25757374 GATGTGTACT
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
44 3 0.03
45 110 0.95
46 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (45 bp):
AGGTGGTTGCTATGTGCTGATTTCACACGGTACCAATGAGTATAA
Found at i:25757322 original size:90 final size:90
Alignment explanation
Indices: 25757183--25757346 Score: 231
Period size: 90 Copynumber: 1.8 Consensus size: 90
25757173 ATCGTTGGAA
* *
25757183 ATATAGGTGGATGCTATGTGCTGATTCCACCTGATATTAATGAAAATAAAAGTGGTTGCTATGTG
1 ATATAGGTGGATGCTATGTGCTGATTCCACCCGATATCAATGAAAATAAAAGTGGTTGCTATGTG
25757248 CTGATTTCAATGGATACCAATGGTT
66 CTGATTTCAATGGATACCAATGGTT
* * * * ** *
25757273 ATATAGGTGGTTGCTATGTGCTGATTTCACCCGGT-TCCATTGAGTATAAAGGTGGTTGCTATGT
1 ATATAGGTGGATGCTATGTGCTGATTCCACCCGATAT-CAATGAAAATAAAAGTGGTTGCTATGT
25757337 GCTGATTTCA
65 GCTGATTTCA
25757347 CCGAGTACTA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
89 1 0.02
90 63 0.98
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (90 bp):
ATATAGGTGGATGCTATGTGCTGATTCCACCCGATATCAATGAAAATAAAAGTGGTTGCTATGTG
CTGATTTCAATGGATACCAATGGTT
Found at i:25777389 original size:3 final size:3
Alignment explanation
Indices: 25777381--25777426 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
25777371 AAACAAGCTT
25777381 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
25777427 AGGGTAAAGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:25778398 original size:81 final size:81
Alignment explanation
Indices: 25778250--25778409 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 81
25778240 GCTTTGGTTA
* ** ** *
25778250 AGTAGTAAATTTAAAGTTTTATCAATCCAATTGGTGTGGGTTCAAACCCCACAATATGCATAATT
1 AGTAGTAAATTTAAAGTTTTATAAATCCAATTAATGCAGGTTCAAACCCCACAATATACATAATT
25778315 TTA-TGAGTTTTTGTTG
66 TTATTG-GTTTTTGTTG
* * * *
25778331 AGTAGTAAATTTAAAGTTTTATAAATCCAATTAATGCATGTTCAAATCCCACATTATACATACTT
1 AGTAGTAAATTTAAAGTTTTATAAATCCAATTAATGCAGGTTCAAACCCCACAATATACATAATT
25778396 TTATTGGTTTTTGT
66 TTATTGGTTTTTGT
25778410 GAAAATGAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 66 0.97
82 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (81 bp):
AGTAGTAAATTTAAAGTTTTATAAATCCAATTAATGCAGGTTCAAACCCCACAATATACATAATT
TTATTGGTTTTTGTTG
Found at i:25782187 original size:11 final size:11
Alignment explanation
Indices: 25782173--25782248 Score: 61
Period size: 11 Copynumber: 7.1 Consensus size: 11
25782163 ATTAAACTTA
*
25782173 ATTACTTTAAT
1 ATTAATTTAAT
25782184 ATTAAATTTAAT
1 ATT-AATTTAAT
25782196 -TTAATATT-AT
1 ATTAAT-TTAAT
25782206 ATTAATTTAAT
1 ATTAATTTAAT
**
25782217 ATTAAGATAAT
1 ATTAATTTAAT
*
25782228 A--ATTTTAAT
1 ATTAATTTAAT
*
25782237 ATTAAATTAAT
1 ATTAATTTAAT
25782248 A
1 A
25782249 AAATCCTATC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 6 0.12
10 7 0.14
11 31 0.61
12 7 0.14
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (11 bp):
ATTAATTTAAT
Found at i:25782198 original size:5 final size:6
Alignment explanation
Indices: 25782179--25782248 Score: 60
Period size: 6 Copynumber: 12.0 Consensus size: 6
25782169 CTTAATTACT
25782179 TTAATA TTAA-A TTTAAT- TTAATA TT-ATA TTAAT- TTAATA TTAAGATA
1 TTAATA TTAATA -TTAATA TTAATA TTAATA TTAATA TTAATA TT-A-ATA
* *
25782226 ATAATT TTAATA TTAA-A TTAATA
1 TTAATA TTAATA TTAATA TTAATA
25782249 AAATCCTATC
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
5 21 0.40
6 25 0.48
7 2 0.04
8 4 0.08
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:25782210 original size:16 final size:16
Alignment explanation
Indices: 25782172--25782247 Score: 89
Period size: 17 Copynumber: 4.4 Consensus size: 16
25782162 GATTAAACTT
*
25782172 AATTACTTTAATATTA
1 AATTAATTTAATATTA
25782188 AATTTAATTTAATATTA
1 AA-TTAATTTAATATTA
*
25782205 TATTAATTTAATATTA
1 AATTAATTTAATATTA
25782221 AGATAATAATTTTAATATTA
1 A-AT--TAA-TTTAATATTA
25782241 AATTAAT
1 AATTAAT
25782248 AAAATCCTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
16 17 0.33
17 19 0.37
19 5 0.10
20 11 0.21
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (16 bp):
AATTAATTTAATATTA
Found at i:25789864 original size:30 final size:30
Alignment explanation
Indices: 25789828--25789890 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
25789818 TAGCAGTACA
* *
25789828 GTGTGGGCCTGAGCCCATTATAGTAACAGT
1 GTGTGGGCCTGAGCCCAATATAGTAACAAT
*
25789858 GTGTGGGCCTTAGCCCAATATAGTAACAAT
1 GTGTGGGCCTGAGCCCAATATAGTAACAAT
25789888 GTG
1 GTG
25789891 GGTTTTAGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (30 bp):
GTGTGGGCCTGAGCCCAATATAGTAACAAT
Found at i:25789899 original size:28 final size:29
Alignment explanation
Indices: 25789825--25789911 Score: 97
Period size: 28 Copynumber: 3.0 Consensus size: 29
25789815 CAGTAGCAGT
* *
25789825 ACAG-TGTGGGCCTGAGCCCATTATAGTA
1 ACAGATGTGGGCCTTAGCCCAATATAGTA
*
25789853 ACAGTGTGTGGGCCTTAGCCCAATATAGTA
1 ACAG-ATGTGGGCCTTAGCCCAATATAGTA
** *
25789883 ACA-ATGTGGGTTTTAGCCCAATACAGTA
1 ACAGATGTGGGCCTTAGCCCAATATAGTA
25789911 A
1 A
25789912 TCAGTACAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
28 26 0.51
30 25 0.49
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (29 bp):
ACAGATGTGGGCCTTAGCCCAATATAGTA
Found at i:25790290 original size:27 final size:25
Alignment explanation
Indices: 25790273--25790576 Score: 189
Period size: 27 Copynumber: 11.3 Consensus size: 25
25790263 GGGTATAACA
*
25790273 GTCATTTTACCCTATAGGTGTATTTC
1 GTCATTTTACCCT-TAGGGGTATTTC
25790299 GGTCATTTTACCCTTCAGGGGTATTTC
1 -GTCATTTTACCCTT-AGGGGTATTTC
*
25790326 GATCATTTTACCCTTTGGGGGTATTTC
1 G-TCATTTTACCC-TTAGGGGTATTTC
* * *
25790353 GGTTATTTTACCCTTCGAGAGTATTTC
1 -GTCATTTTACCCTTAG-GGGTATTTC
* *
25790380 GGTCATTTTACCCTTCGAGAGTATTTC
1 -GTCATTTTACCCTTAG-GGGTATTTC
* ** * *
25790407 GGTTATTTTATTCATCGAGGGTATTTC
1 -GTCATTTTACCCTTAG-GGGTATTTC
*
25790434 GATCA-TTTACCCTTCAAAGGGTATTTC
1 G-TCATTTTACCCTT--AGGGGTATTTC
*
25790461 GATCATTTTACCCTTCAAGGGTATTTC
1 G-TCATTTTACCCTT-AGGGGTATTTC
* * *
25790488 GGTTATTTTACCCTTCGAGAGTATTTC
1 -GTCATTTTACCCTTAG-GGGTATTTC
*
25790515 GGTCATTTTAGCCATT-GAGGGTATTTC
1 -GTCATTTTA-CCCTTAG-GGGTATTTC
* * *
25790542 GGTCATTTTACCTTTTGAGGGTAATTTG
1 -GTCATTTTACCCTTAG-GGGT-ATTTC
25790570 GTCATTT
1 GTCATTT
25790577 ATTGACCTCT
Statistics
Matches: 236, Mismatches: 27, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
26 16 0.07
27 199 0.84
28 21 0.09
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (25 bp):
GTCATTTTACCCTTAGGGGTATTTC
Found at i:25790563 original size:81 final size:81
Alignment explanation
Indices: 25790273--25790564 Score: 342
Period size: 81 Copynumber: 3.6 Consensus size: 81
25790263 GGGTATAACA
* *
25790273 GTCATTTTACCCTAT--AGGTGTATTTCGGTCATTTTACCCTTC-AGGGGTATTTCGATCATTTT
1 GTCATTTTACCCT-TCGAGG-GTATTTCGGTCATTTTACCCTTCGA-GGGTATTTCGGTTATTTT
* *
25790335 ACCCTTTGGGGGTATTTCG
63 ACCCTTCGAGGGTATTTCG
* * * **
25790354 GTTATTTTACCCTTCGAGAGTATTTCGGTCATTTTACCCTTCGAGAGTATTTCGGTTATTTTATT
1 GTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTTATTTTACC
*
25790419 CATCGAGGGTATTTCG
66 CTTCGAGGGTATTTCG
* * * *
25790435 ATCA-TTTACCCTTCAAAGGGTATTTCGATCATTTTACCCTTCAAGGGTATTTCGGTTATTTTAC
1 GTCATTTTACCCTTC-GAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTTATTTTAC
*
25790499 CCTTCGAGAGTATTTCG
65 CCTTCGAGGGTATTTCG
* * *
25790516 GTCATTTTAGCCATT-GAGGGTATTTCGGTCATTTTACCTTTTGAGGGTA
1 GTCATTTTA-CCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTA
25790565 ATTTGGTCAT
Statistics
Matches: 177, Mismatches: 28, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
80 11 0.06
81 155 0.88
82 7 0.04
83 4 0.02
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTTATTTTACC
CTTCGAGGGTATTTCG
Found at i:25790573 original size:54 final size:53
Alignment explanation
Indices: 25790273--25790576 Score: 317
Period size: 54 Copynumber: 5.6 Consensus size: 53
25790263 GGGTATAACA
* *
25790273 GTCATTTTACCCTAT-AGGTGTATTTCGGTCATTTTACCCTTCAGGGGTATTTCG
1 GTCATTTTACCCTTTGAGG-GTATTTCGGTCATTTTACCCTTGA-GGGTATTTCG
* * * *
25790327 ATCATTTTACCCTTTGGGGGTATTTCGGTTATTTTACCCTTCGAGAGTATTTCG
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTT-GAGGGTATTTCG
* * * * * *
25790381 GTCATTTTACCCTTCGAGAGTATTTCGGTTATTTTATTCATCGAGGGTATTTCG
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTA-CCCTTGAGGGTATTTCG
* ** * *
25790435 ATCA-TTTACCCTTCAAAGGGTATTTCGATCATTTTACCCTTCAAGGGTATTTCG
1 GTCATTTTACCCTT-TGAGGGTATTTCGGTCATTTTACCCTT-GAGGGTATTTCG
* * * *
25790489 GTTATTTTACCCTTCGAGAGTATTTCGGTCATTTTAGCCATTGAGGGTATTTCG
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTA-CCCTTGAGGGTATTTCG
*
25790543 GTCATTTTACCTTTTGAGGGTAATTT-GGTCATTT
1 GTCATTTTACCCTTTGAGGGT-ATTTCGGTCATTT
25790577 ATTGACCTCT
Statistics
Matches: 206, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
53 11 0.05
54 173 0.84
55 22 0.11
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (53 bp):
GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTGAGGGTATTTCG
Found at i:25790787 original size:16 final size:17
Alignment explanation
Indices: 25790766--25790798 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25790756 ATCCGTGTGG
25790766 GGCCCAC-GAGCCCATT
1 GGCCCACAGAGCCCATT
*
25790782 GGCCCACATAGCCCATT
1 GGCCCACAGAGCCCATT
25790799 TCGGCCTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.21, C:0.42, G:0.21, T:0.15
Consensus pattern (17 bp):
GGCCCACAGAGCCCATT
Found at i:25796841 original size:30 final size:30
Alignment explanation
Indices: 25796771--25796841 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 30
25796761 CTCTTATTTA
* *
25796771 AACATTTTA-AAAAGTTTAACTTTGATTTG
1 AACATTCTATAAAAGTTTAACTTTGATATG
* ** * *
25796800 AGCATGGTATAAAAGTTTGACTTTTATATG
1 AACATTCTATAAAAGTTTAACTTTGATATG
25796830 AACATTCTATAA
1 AACATTCTATAA
25796842 GATGTAACCC
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
29 6 0.19
30 26 0.81
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (30 bp):
AACATTCTATAAAAGTTTAACTTTGATATG
Found at i:25803006 original size:12 final size:12
Alignment explanation
Indices: 25802989--25803013 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25802979 TTAGTTTAGT
25802989 ATTACTTCTCAA
1 ATTACTTCTCAA
25803001 ATTACTTCTCAA
1 ATTACTTCTCAA
25803013 A
1 A
25803014 AGTGTTACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTACTTCTCAA
Found at i:25816135 original size:25 final size:25
Alignment explanation
Indices: 25816086--25816135 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
25816076 TTTGCAGTGG
* *
25816086 TTGATTTCTCTTTTGTTAGCTCTGA
1 TTGATTTCTCTTTTGTCAGCGCTGA
25816111 TTGATTTCTCTTTTG-CAGCGGCTGA
1 TTGATTTCTCTTTTGTCAGC-GCTGA
25816136 CAATGCCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.12, C:0.18, G:0.20, T:0.50
Consensus pattern (25 bp):
TTGATTTCTCTTTTGTCAGCGCTGA
Found at i:25816716 original size:12 final size:12
Alignment explanation
Indices: 25816699--25816728 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
25816689 GCAATGTTTT
*
25816699 AACAATATTATA
1 AACAATATGATA
25816711 AACAATATGATA
1 AACAATATGATA
25816723 AACAAT
1 AACAAT
25816729 CTAAATAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27
Consensus pattern (12 bp):
AACAATATGATA
Found at i:25816808 original size:67 final size:67
Alignment explanation
Indices: 25816642--25816853 Score: 309
Period size: 67 Copynumber: 3.1 Consensus size: 67
25816632 AGAAAATTTT
* * * *
25816642 AACAATATGATAAACAATCTAAATAAAGGATAATTATATTATTAGTTG-CAATGTTTTAACAATA
1 AACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTA-TAGAAAAT-TTGT-ACAATA
*
25816706 TTATA
63 TGATA
*
25816711 AACAATATGATAAACAATCTAAATAAAGGGTAATTGTATTATTATAGAAAATTTGTACAATATGA
1 AACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTATAGAAAATTTGTACAATATGA
25816776 TA
66 TA
* * *
25816778 AACAATACGATAAACAATCTAAATAAAGGGTAATTATAATATTATAGAAAATTTGTATAATATGA
1 AACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTATAGAAAATTTGTACAATATGA
25816843 TA
66 TA
25816845 AACAATATG
1 AACAATATG
25816854 TATGATAAAC
Statistics
Matches: 131, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
67 81 0.62
68 5 0.04
69 45 0.34
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (67 bp):
AACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTATAGAAAATTTGTACAATATGA
TA
Found at i:25816855 original size:21 final size:21
Alignment explanation
Indices: 25816812--25816856 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
25816802 AAAGGGTAAT
* *
25816812 TATAATATTATAGAAAATTTG
1 TATAATATGATAGAAAATATG
25816833 TATAATATGATA-AACAATATG
1 TATAATATGATAGAA-AATATG
25816854 TAT
1 TAT
25816857 GATAAACCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (21 bp):
TATAATATGATAGAAAATATG
Found at i:25819114 original size:39 final size:41
Alignment explanation
Indices: 25819069--25819174 Score: 126
Period size: 44 Copynumber: 2.5 Consensus size: 41
25819059 TTTCCTTATG
** *
25819069 CTATTACATCTCTATTCCATTCAACCAAACACAAGAA-TAC
1 CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
25819109 C-ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTAC
1 CTATTACGCCTCTATT-C----CATTCAACCAAACAAAAGAATTAC
25819154 CTATTACGCCTCTATTCCATT
1 CTATTACGCCTCTATTCCATT
25819175 ACAGCGAACC
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
39 12 0.21
40 2 0.04
41 4 0.07
44 19 0.34
45 5 0.09
46 14 0.25
ACGTcount: A:0.36, C:0.30, G:0.04, T:0.30
Consensus pattern (41 bp):
CTATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
Found at i:25819149 original size:44 final size:46
Alignment explanation
Indices: 25819086--25819177 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
25819076 ATCTCTATTC
*
25819086 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
25819130 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
25819176 CA
1 CA
25819178 GCGAACCAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 19 0.42
45 4 0.09
46 22 0.49
ACGTcount: A:0.39, C:0.30, G:0.04, T:0.26
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
Found at i:25819185 original size:46 final size:44
Alignment explanation
Indices: 25819090--25819188 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 44
25819080 CTATTCCATT
* *
25819090 CAACCAAACACAAGAATACCATTACGCCTCTATTCCATTACATT
1 CAACCAAACAAAAGAATACCATTACGCCTCTATTCCATTACATG
25819134 CAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTACA-G
1 CAACCAAACAAAAGAA-TACC-ATTACGCCTCTATTCCATTACATG
25819179 CGAACCAAAC
1 C-AACCAAAC
25819189 GTGGCCTTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
44 15 0.30
45 5 0.10
46 30 0.60
ACGTcount: A:0.40, C:0.31, G:0.06, T:0.22
Consensus pattern (44 bp):
CAACCAAACAAAAGAATACCATTACGCCTCTATTCCATTACATG
Found at i:25836881 original size:20 final size:20
Alignment explanation
Indices: 25836849--25836907 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 20
25836839 TCATATCAAT
*
25836849 AAAT-AATTTAAAATTATAA
1 AAATAAATTCAAAATTATAA
* *
25836868 AAA-ATATTCAAAA-AATAA
1 AAATAAATTCAAAATTATAA
25836886 AAATAAATTCAAAATTATAA
1 AAATAAATTCAAAATTATAA
25836906 AA
1 AA
25836908 CGTTCAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 7 0.22
19 19 0.59
20 6 0.19
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
AAATAAATTCAAAATTATAA
Found at i:25837014 original size:31 final size:32
Alignment explanation
Indices: 25836976--25837037 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
25836966 TTAGTTATTA
*
25836976 TTTTTAAAAA-GTTGATGGACAAATTTAACTC
1 TTTTTAAAAATGTTGATAGACAAATTTAACTC
*
25837007 TTTTTAAAAATGTTGATAGTCAAATTTAACT
1 TTTTTAAAAATGTTGATAGACAAATTTAACT
25837038 TACAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (32 bp):
TTTTTAAAAATGTTGATAGACAAATTTAACTC
Found at i:25869184 original size:67 final size:67
Alignment explanation
Indices: 25869070--25869326 Score: 324
Period size: 67 Copynumber: 3.8 Consensus size: 67
25869060 AAGGTATAGG
* *
25869070 GTGTAAGACCATAGCTCAACTATGGCAACGA-ATG-GA-TTCTGTTGGGACAGTAAACATGGGGT
1 GTGTAAGACCATAGCTCAACTATGACAAC-ATA-GAGAGTTC-GTAGGGACAGTAAACATGGGGT
25869132 ATGTT
63 ATGTT
*
25869137 GTGTAAGACCATAGCTCATCTATGACAACATAGAGAGTTCGTAGGGACAGTAAACATGGGGTATG
1 GTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCGTAGGGACAGTAAACATGGGGTATG
25869202 TT
66 TT
** * * * *
25869204 GTGTAAGACCATAGCTCGGCTATGACAGCATAGAGAGTTTGCTA-GGACAGTAAACACGAGGTAT
1 GTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCG-TAGGGACAGTAAACATGGGGTAT
25869268 GTT
65 GTT
* * * * *
25869271 GTGTAAGACCATAGGTCAACTATGGCAACATAGAGAGTCCGTTGGGATAGTAAACA
1 GTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCGTAGGGACAGTAAACA
25869327 CGGGAAGTCT
Statistics
Matches: 167, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
66 3 0.02
67 159 0.95
68 5 0.03
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.25
Consensus pattern (67 bp):
GTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCGTAGGGACAGTAAACATGGGGTATG
TT
Found at i:25871302 original size:27 final size:26
Alignment explanation
Indices: 25871257--25871329 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
25871247 TAGTTCGCCA
* * * * *
25871257 AGACACTAAACATGGGGTAATCTATTG
1 AGACATTAAACACGAGGTAATCT-GTC
*
25871284 AGACATTAAACACGAGGTAGTCTGTC
1 AGACATTAAACACGAGGTAATCTGTC
*
25871310 AGGACATTAAACACAAGGTA
1 A-GACATTAAACACGAGGTA
25871330 GCCCGTCAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (26 bp):
AGACATTAAACACGAGGTAATCTGTC
Found at i:25871330 original size:27 final size:27
Alignment explanation
Indices: 25871285--25871341 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
25871275 AATCTATTGA
* * *
25871285 GACATTAAACACGAGGTAGTCTGTCAG
1 GACATTAAACACAAGGTAGCCCGTCAG
25871312 GACATTAAACACAAGGTAGCCCGTCAG
1 GACATTAAACACAAGGTAGCCCGTCAG
25871339 GAC
1 GAC
25871342 GTTATGTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
GACATTAAACACAAGGTAGCCCGTCAG
Found at i:25877662 original size:20 final size:20
Alignment explanation
Indices: 25877637--25877686 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
25877627 TATCAGTCCT
* *
25877637 ATGAATAGTGGGGTCAAGTC
1 ATGAATAGTGGAGTCAAATC
*
25877657 ATGAATAGTAGAGTCAAATC
1 ATGAATAGTGGAGTCAAATC
25877677 ATGAATAGTG
1 ATGAATAGTG
25877687 ATAACATGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (20 bp):
ATGAATAGTGGAGTCAAATC
Found at i:25883537 original size:70 final size:69
Alignment explanation
Indices: 25883412--25883975 Score: 422
Period size: 70 Copynumber: 8.1 Consensus size: 69
25883402 GATCTCCCCA
* * * * * *
25883412 AAAATAGTTAGTGAGAGCTCAAGCTCCCAGCTATAGCTTTAAGACTCGCAGGTTCAATACCGCAG
1 AAAACAGTTAGCGAGAGCTCAAGCT-CCAACTGTAGCTTTAAGGCTCGCAGGTTCAATATCGCAG
25883477 CCTCT
65 CCTCT
* * * * * *
25883482 GAAACAGGTAGCGAGAGCTCAAGCTCTCAACTGTAGTTTTAAAGCTCCCAGGTTCAAT-TACACA
1 AAAACAGTTAGCGAGAGCTCAAGCTC-CAACTGTAGCTTTAAGGCTCGCAGGTTCAATAT-CGCA
25883546 GCCTCT
64 GCCTCT
* * * * * * *
25883552 AAAGCAGTTAGCAAGAGCTCAAGCTCCCATTGT-GATCTTAAGGCTCGTAAGTTCAATATCGCAG
1 AAAACAGTTAGCGAGAGCTCAAGCTCCAACTGTAGCT-TTAAGGCTCGCAGGTTCAATATCGCAG
*
25883616 CCTTT
65 CCTCT
* * * * * *
25883621 AAAACAATTAGCGAGAGCCCAAGCTCTTAATTGTAGCTTTAAGGCTCGTAGGTTCAATA-CTGTA
1 AAAACAGTTAGCGAGAGCTCAAGCTC-CAACTGTAGCTTTAAGGCTCGCAGGTTCAATATC-GCA
*
25883685 GCCTCC
64 GCCTCT
* ** * * * * * ** *
25883691 AAAATAGTTAATGATAGC-CTAAGCTCCCAGT-TATGATCGTAAGGCTCATAGGTTTAATATCGC
1 AAAACAGTTAGCGAGAGCTC-AAGCTCCAACTGTA-GCT-TTAAGGCTCGCAGGTTCAATATCGC
*
25883754 AGCCTCC
63 AGCCTCT
* * * * * * ***
25883761 AAAACAGTTAGTGCGAGCCCAAGCTCCCAACTATAGCTTTAAAGCTCACAGGTTCAATATTATAG
1 AAAACAGTTAGCGAGAGCTCAAGCT-CCAACTGTAGCTTTAAGGCTCGCAGGTTCAATATCGCAG
25883826 CCTCT
65 CCTCT
* * * * * *
25883831 AAAACAATTAGCGATAGCCCAAGCTCCTAACTGTA-ATCTTAAGGCTCACAGGTTCAATATCGTA
1 AAAACAGTTAGCGAGAGCTCAAGCTCC-AACTGTAGCT-TTAAGGCTCGCAGGTTCAATATCGCA
25883895 GCCTCT
64 GCCTCT
* * * * * *
25883901 AAAATAGTTAGTGTGAGCTGAAGCTCCAACTGTAGCTTTAAGGCTCGCAGGTTCAACA-CTGCAA
1 AAAACAGTTAGCGAGAGCTCAAGCTCCAACTGTAGCTTTAAGGCTCGCAGGTTCAATATC-GCAG
25883965 CCTCT
65 CCTCT
25883970 AAAACA
1 AAAACA
25883976 ATTGAAGCTT
Statistics
Matches: 390, Mismatches: 86, Indels: 37
0.76 0.17 0.07
Matches are distributed among these distances:
68 5 0.01
69 99 0.25
70 274 0.70
71 10 0.03
72 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (69 bp):
AAAACAGTTAGCGAGAGCTCAAGCTCCAACTGTAGCTTTAAGGCTCGCAGGTTCAATATCGCAGC
CTCT
Found at i:25883786 original size:140 final size:138
Alignment explanation
Indices: 25883461--25883978 Score: 489
Period size: 140 Copynumber: 3.7 Consensus size: 138
25883451 TAAGACTCGC
* * * * * * *
25883461 AGGTTCAATACCGCAGCCTCTGAAACAGGTAGCGAGAGCTCAAGCTCTCAACTGTAGTTTTAAAG
1 AGGTTCAATATCGCAGCCTCTAAAACAGTTAGTGAGAGCCCAAGCTC-CAACTGTAGCTTTAAGG
* ** * * * * * * *
25883526 CTCCCAGGTTCAATTAC-ACAGCCTCTAAAGCAGTTAGCAAGAGCTCAAGCTCCCATTGTGATCT
65 CTCGCAGGTTCAA-TACTGTAGCCTCCAAAACAATTAACGATAGCCCAAGCTCCCATTGTGATCT
*
25883590 TAAGGCTCGT
129 TAAGGCTCAT
* * * * * *
25883600 AAGTTCAATATCGCAGCCTTTAAAACAATTAGCGAGAGCCCAAGCTCTTAATTGTAGCTTTAAGG
1 AGGTTCAATATCGCAGCCTCTAAAACAGTTAGTGAGAGCCCAAGCTC-CAACTGTAGCTTTAAGG
* * * * * * *
25883665 CTCGTAGGTTCAATACTGTAGCCTCCAAAATAGTTAATGATAGCCTAAGCTCCCAGTTATGATCG
65 CTCGCAGGTTCAATACTGTAGCCTCCAAAACAATTAACGATAGCCCAAGCTCCCA-TTGTGATCT
25883730 TAAGGCTCAT
129 TAAGGCTCAT
* * * * *
25883740 AGGTTTAATATCGCAGCCTCCAAAACAGTTAGTGCGAGCCCAAGCTCCCAACTATAGCTTTAAAG
1 AGGTTCAATATCGCAGCCTCTAAAACAGTTAGTGAGAGCCCAAGCT-CCAACTGTAGCTTTAAGG
* * * * * * * *
25883805 CTCACAGGTTCAATATTATAGCCTCTAAAACAATTAGCGATAGCCCAAGCTCCTAACTGTAATCT
65 CTCGCAGGTTCAATACTGTAGCCTCCAAAACAATTAACGATAGCCCAAGCTCC-CATTGTGATCT
*
25883870 TAAGGCTCAC
129 TAAGGCTCAT
* * * **
25883880 AGGTTCAATATCGTAGCCTCTAAAATAGTTAGTGTGAGCTGAAGCTCCAACTGTAGCTTTAAGGC
1 AGGTTCAATATCGCAGCCTCTAAAACAGTTAGTGAGAGCCCAAGCTCCAACTGTAGCTTTAAGGC
* * * *
25883945 TCGCAGGTTCAACACTGCAACCTCTAAAACAATT
66 TCGCAGGTTCAATACTGTAGCCTCCAAAACAATT
25883979 GAAGCTTGTG
Statistics
Matches: 306, Mismatches: 69, Indels: 8
0.80 0.18 0.02
Matches are distributed among these distances:
138 3 0.01
139 137 0.45
140 164 0.54
141 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (138 bp):
AGGTTCAATATCGCAGCCTCTAAAACAGTTAGTGAGAGCCCAAGCTCCAACTGTAGCTTTAAGGC
TCGCAGGTTCAATACTGTAGCCTCCAAAACAATTAACGATAGCCCAAGCTCCCATTGTGATCTTA
AGGCTCAT
Found at i:25887138 original size:20 final size:20
Alignment explanation
Indices: 25887108--25887158 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
25887098 ATGTCAGTCC
*
25887108 TATGAATAGTGGGGTC-AAT
1 TATGAATAGTGGAGTCAAAT
*
25887127 TCATGAACAGTGGAGTCAAAT
1 T-ATGAATAGTGGAGTCAAAT
25887148 TATGAATAGTG
1 TATGAATAGTG
25887159 ATAACATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 22 0.81
21 4 0.15
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.29
Consensus pattern (20 bp):
TATGAATAGTGGAGTCAAAT
Found at i:25893379 original size:9 final size:9
Alignment explanation
Indices: 25893362--25893392 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
25893352 TCGAGTTGAT
25893362 TCGAATAAC
1 TCGAATAAC
*
25893371 TCGATTAAC
1 TCGAATAAC
25893380 TCGAATAAC
1 TCGAATAAC
25893389 TCGA
1 TCGA
25893393 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:25898870 original size:162 final size:162
Alignment explanation
Indices: 25898596--25898922 Score: 591
Period size: 162 Copynumber: 2.0 Consensus size: 162
25898586 GCAAAAATGA
* *
25898596 TGAGAATTGTTAAATTTAATTTTTGAAGTGTATTCTGATTATATTTCTTTCCTCATATATATAAT
1 TGAGAAATGTTAAATTTAATTTTTGAAGTGTATTCTGATTATATTTCTTTCCTCATATATAAAAT
*
25898661 AAGGTTTTCACATAAAAAAGGTAATAATTAGGCTTAATTTTATATTAGATTTGTGACAAGTATCA
66 AAGGTTTTCACACAAAAAAGGTAATAATTAGGCTTAATTTTATATTAGATTTGTGACAAGTATCA
25898726 CTATAGTATAGTTTTATATTTAACTTAAAATT
131 CTATAGTATAGTTTTATATTTAACTTAAAATT
*
25898758 TGAGAAATGTTAAATTTGATTTTTGAAGTGTATTCTGATTATATTTCTTTCCTCATATATAAAAT
1 TGAGAAATGTTAAATTTAATTTTTGAAGTGTATTCTGATTATATTTCTTTCCTCATATATAAAAT
* *
25898823 AAGGTTTTCACACAAATAAGGTAATAATTAGGTTTAATTTTATATTAGATTTGTGACAAGTATCA
66 AAGGTTTTCACACAAAAAAGGTAATAATTAGGCTTAATTTTATATTAGATTTGTGACAAGTATCA
*
25898888 CTATATTATAGTTTTATATTTAACTTAAAATT
131 CTATAGTATAGTTTTATATTTAACTTAAAATT
25898920 TGA
1 TGA
25898923 CAATATTTCC
Statistics
Matches: 158, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
162 158 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (162 bp):
TGAGAAATGTTAAATTTAATTTTTGAAGTGTATTCTGATTATATTTCTTTCCTCATATATAAAAT
AAGGTTTTCACACAAAAAAGGTAATAATTAGGCTTAATTTTATATTAGATTTGTGACAAGTATCA
CTATAGTATAGTTTTATATTTAACTTAAAATT
Found at i:25900222 original size:29 final size:29
Alignment explanation
Indices: 25900187--25900282 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
25900177 TGTGATATGC
25900187 GAACCCTAGGAACATGCGAGCCTATGTGT
1 GAACCCTAGGAACATGCGAGCCTATGTGT
25900216 GAACCCTAGGAACATGCGAGCCTATGTGT
1 GAACCCTAGGAACATGCGAGCCTATGTGT
* * * *
25900245 GAACCCTAGTAACATGCTAGCATATGTGA
1 GAACCCTAGGAACATGCGAGCCTATGTGT
*
25900274 AAACCCTAG
1 GAACCCTAG
25900283 AAACTTGCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (29 bp):
GAACCCTAGGAACATGCGAGCCTATGTGT
Found at i:25923699 original size:20 final size:20
Alignment explanation
Indices: 25923672--25923720 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
25923662 CCTTTGCATA
25923672 GCTCTGTTCAGCACTGCTCT
1 GCTCTGTTCAGCACTGCTCT
* * **
25923692 GTTCTGTTTAGTTCTGCTCT
1 GCTCTGTTCAGCACTGCTCT
25923712 GCTCTGTTC
1 GCTCTGTTC
25923721 TGTTATGTTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.06, C:0.29, G:0.20, T:0.45
Consensus pattern (20 bp):
GCTCTGTTCAGCACTGCTCT
Found at i:25923713 original size:25 final size:25
Alignment explanation
Indices: 25923676--25923737 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
25923666 TGCATAGCTC
* *
25923676 TGTTCAGCACTGCTCTGTTCTGTT-
1 TGTTCTGCTCTGCTCTGTTCTGTTA
25923700 TAGTTCTGCTCTGCTCTGTTCTGTTA
1 T-GTTCTGCTCTGCTCTGTTCTGTTA
25923726 TGTTCTGCTCTG
1 TGTTCTGCTCTG
25923738 TCCTATTCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.06, C:0.24, G:0.21, T:0.48
Consensus pattern (25 bp):
TGTTCTGCTCTGCTCTGTTCTGTTA
Found at i:25923746 original size:25 final size:25
Alignment explanation
Indices: 25923685--25923746 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
25923675 CTGTTCAGCA
*
25923685 CTGCTCTGTTCTGTTTAGTTCTGCT
1 CTGCTCTATTCTGTTTAGTTCTGCT
*
25923710 CTGCTCTGTTCTG-TTATGTTCTGCT
1 CTGCTCTATTCTGTTTA-GTTCTGCT
25923735 CTG-TCCTATTCT
1 CTGCT-CTATTCT
25923747 ATTTGTTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
24 4 0.12
25 30 0.88
ACGTcount: A:0.05, C:0.26, G:0.18, T:0.52
Consensus pattern (25 bp):
CTGCTCTATTCTGTTTAGTTCTGCT
Found at i:25936413 original size:23 final size:23
Alignment explanation
Indices: 25936387--25936432 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
25936377 GCGTAACTGC
25936387 TGTATAGTAATAGGGTGCCCGAA
1 TGTATAGTAATAGGGTGCCCGAA
* *
25936410 TGTATAGTTATAGGGTGCGCGAA
1 TGTATAGTAATAGGGTGCCCGAA
25936433 GCCCACCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28
Consensus pattern (23 bp):
TGTATAGTAATAGGGTGCCCGAA
Found at i:25939100 original size:86 final size:86
Alignment explanation
Indices: 25938727--25939079 Score: 706
Period size: 86 Copynumber: 4.1 Consensus size: 86
25938717 GCACCCTATA
25938727 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
1 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
25938792 ACCCCTCCATACCTCCCTCGG
66 ACCCCTCCATACCTCCCTCGG
25938813 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
1 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
25938878 ACCCCTCCATACCTCCCTCGG
66 ACCCCTCCATACCTCCCTCGG
25938899 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
1 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
25938964 ACCCCTCCATACCTCCCTCGG
66 ACCCCTCCATACCTCCCTCGG
25938985 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
1 GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
25939050 ACCCCTCCATACCTCCCTCGG
66 ACCCCTCCATACCTCCCTCGG
25939071 GGAGGCTTA
1 GGAGGCTTA
25939080 CCGGACACTT
Statistics
Matches: 267, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 267 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (86 bp):
GGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAACAACACTATAACTACACTAGGAACGTT
ACCCCTCCATACCTCCCTCGG
Found at i:25941078 original size:86 final size:86
Alignment explanation
Indices: 25940421--25941057 Score: 1274
Period size: 86 Copynumber: 7.4 Consensus size: 86
25940411 GCAAGAGGGT
25940421 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
25940486 AACACTATAACTACACTAGGA
66 AACACTATAACTACACTAGGA
25940507 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
25940572 AACACTATAACTACACTAGGA
66 AACACTATAACTACACTAGGA
25940593 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
25940658 AACACTATAACTACACTAGGA
66 AACACTATAACTACACTAGGA
25940679 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
25940744 AACACTATAACTACACTAGGA
66 AACACTATAACTACACTAGGA
25940765 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
25940830 AACACTATAACTACACTAGGA
66 AACACTATAACTACACTAGGA
25940851 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
25940916 AACACTATAACTACACTAGGA
66 AACACTATAACTACACTAGGA
25940937 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
25941002 AACACTATAACTACACTAGGA
66 AACACTATAACTACACTAGGA
25941023 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTA
1 ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTA
25941058 CCGGACACTT
Statistics
Matches: 551, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 551 1.00
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.21
Consensus pattern (86 bp):
ACGTTACCCCTCCATACCTCCCTCGGGGAGGCTTATATTAAATCCCGTGCAAACAAGAGGGTAAC
AACACTATAACTACACTAGGA
Found at i:25943214 original size:23 final size:23
Alignment explanation
Indices: 25943188--25943233 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
25943178 GCGTAACTGC
25943188 TGTATAGTAATAGGGTGCCCGAA
1 TGTATAGTAATAGGGTGCCCGAA
* *
25943211 TGTATAGTTATAGGGTGCGCGAA
1 TGTATAGTAATAGGGTGCCCGAA
25943234 GCCCACCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28
Consensus pattern (23 bp):
TGTATAGTAATAGGGTGCCCGAA
Found at i:25953341 original size:45 final size:45
Alignment explanation
Indices: 25953277--25953368 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
25953267 TTCAAGATTG
*
25953277 TGAGTTTCCAGTAGACCTTATGGCTCTTCCGTTCCACGAGTTTGA
1 TGAGTTTCCAGCAGACCTTATGGCTCTTCCGTTCCACGAGTTTGA
25953322 TGAGTTTCCAGCAGACCTTATGGCTCTTCCGTTCCACGAGTTTGA
1 TGAGTTTCCAGCAGACCTTATGGCTCTTCCGTTCCACGAGTTTGA
25953367 TG
1 TG
25953369 TAATTTTGGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (45 bp):
TGAGTTTCCAGCAGACCTTATGGCTCTTCCGTTCCACGAGTTTGA
Found at i:25956364 original size:19 final size:19
Alignment explanation
Indices: 25956337--25956383 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
25956327 TAAAGAATTG
*
25956337 AGAGAAGGCATCATAATAC
1 AGAGGAGGCATCATAATAC
*
25956356 AGAGGAGGCATCATAATAT
1 AGAGGAGGCATCATAATAC
25956375 AGAGGAGGC
1 AGAGGAGGC
25956384 TACCTGGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.43, C:0.13, G:0.30, T:0.15
Consensus pattern (19 bp):
AGAGGAGGCATCATAATAC
Found at i:25956597 original size:15 final size:15
Alignment explanation
Indices: 25956577--25956610 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
25956567 AGAAATTTTG
25956577 AGTAATAAATTAGGA
1 AGTAATAAATTAGGA
25956592 AGTAATAAATTAGGA
1 AGTAATAAATTAGGA
25956607 AGTA
1 AGTA
25956611 CTTAGACCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (15 bp):
AGTAATAAATTAGGA
Found at i:25962578 original size:13 final size:13
Alignment explanation
Indices: 25962560--25962593 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
25962550 ATATAATTAT
25962560 TAATAATATTTAA
1 TAATAATATTTAA
25962573 TAATAAT-TTTAA
1 TAATAATATTTAA
25962585 T-ATAATATT
1 TAATAATATT
25962594 ATTATTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.25
12 8 0.40
13 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAATATTTAA
Found at i:25963223 original size:771 final size:787
Alignment explanation
Indices: 25962204--25963773 Score: 2696
Period size: 797 Copynumber: 2.0 Consensus size: 787
25962194 ATTTTCTAAA
25962204 ATTTCACAATTTTCGACGAAGAGAATTTTTAGGATGTTATAGAGTGTTTCGATGTCCTGATAATA
1 ATTTCACAATTTTCGACGAAGAGAATTTTTAGGATGTTATAGAGTGTTTCGATGTCCTGATAATA
25962269 AGAAGGTAGGCGTGTCGAATATGTTAACTCATGATCACTTACACCATGTTTGGTTCGGGTGAATG
66 AGAAGGTAGGCGTGTCGAATATGTTAACTCATGATCACTTACACCATGTTTGGTTCGGGTGAATG
25962334 GAATAGAGCTGTAATCAATAATTCAATTATTTGGTTCAATGGAATGAAATAGAATTGTAATAGTA
131 GAATAGAGCTGTAATCAATAATTCAATTATTTGGTTCAATGGAATGAAATAGAATTGTAATAGTA
25962399 TTCTTGTGTTTGGTTGAATAGAATAGATGTTGTAATAGCATAAGGAAAAGGGCTTAAATG-A-TG
196 TTCTTGTGTTTGGTTGAATAGAATAGATGTTGTAATAGCATAAGGAAAAGGGCTTAAATGAAGTG
* * *
25962462 -TTA-AAAAAATGTTCAGTTTGTTAGACT-ATAAAC-A-ATTT-TTAAATGATGA-AA-A-T-TT
261 CTTAGAAAAAATGTT-AGTTAGGTAGA-TGAT-AACTATATTTATTAAATGATAATAAGATTATT
* ** * *
25962517 AATAAA-ATAA--T-AT-ATAAT-TTAATAACATTACTAATATA-ATTATT-A-ATAATATTTAA
323 AATAAACATAATTTAATAAAAATAAAAATAA-ATAATTAATA-ACATTATTAATATAATATTTAA
25962573 TAATAATTTTAATATAATATTATTATTAAGAATATTTCACTGCCTAATATATTTGCTTCAATCTA
386 TAATAATTTTAATATAATATTATTATTAAGAATATTTCACTGCCTAATATATTTGCTTCAATCTA
25962638 ACCTCTCACATCTTCTCTTACAAACAAGTCACAATCGCAAATATAAAAATGGGTTTTACATACGA
451 ACCTCTCACATCTTCTCTTACAAACAAGTCACAATCGCAAATATAAAAATGGGTTTTACATACGA
25962703 TATGATAATCCTCTAATAACATTTTATTTTCATAGAAGGCGAATTTTTTATATTTTATTTTATCC
516 TATGATAATCCTCTAATAACATTTTATTTTCATAGAAGGCGAATTTTTTATATTTTATTTTATCC
25962768 TTTATAATAGCATGATAACAACAATTAATTATTAGGTATACTCTTTAATATATTAATTATTTATA
581 TTTATAATAGCATGATAACAACAATTAATTATTAGGTATACTCTTTAATATATTAATTATTTATA
25962833 GCAATCTTTGGTGAAATAAAAACCTTCAAATTTTACATAAAAATTACTAAATTTTAGTGATATTA
646 GCAATCTTTGGTGAAATAAAAACCTTCAAATTTTACATAAAAATTACTAAATTTTAGTGATATTA
25962898 GTTCTTTTCATATGTGAAAAAAAAAAATCAAAACTCATAGTTCTTTATGTTATTCAAAAACATGA
711 GTTCTTTTCATATGTGAAAAAAAAAAATCAAAACTCATAGTTCTTTATGTTATTCAAAAACATGA
25962963 AGAAAACTCGAC
776 AGAAAACTCGAC
25962975 ATTTCACAATTTTCGACGAAGAGAATTTTTAGGATGTTATAGAGTGTTTCGATGTCCTGATAATA
1 ATTTCACAATTTTCGACGAAGAGAATTTTTAGGATGTTATAGAGTGTTTCGATGTCCTGATAATA
25963040 AGAAGGTAGGCGTGTCGAATATGTTAACTCATGATCACTTACACCATGTTTGGTTCGGGTGAATG
66 AGAAGGTAGGCGTGTCGAATATGTTAACTCATGATCACTTACACCATGTTTGGTTCGGGTGAATG
25963105 GAATAGAGCTGTAATCAATAATTCAATTATTTGGTTCAATGGAATGAAATAGAATTGTAATAGTA
131 GAATAGAGCTGTAATCAATAATTCAATTATTTGGTTCAATGGAATGAAATAGAATTGTAATAGTA
25963170 TTCTTGTGTTTGGTTGAATAGAATAGATGTTGTAATAGCATAAGGAAAAGGGCTTAAATGACCAA
196 TTCTTGTGTTTGGTTGAATAGAATAGATGTTGTAATAGCATAAGGAAAAGGGCTTAAATG----A
* * * * * * **
25963235 AGTGCCCTTAGCAGAATTGTTTGTTAGGTAGATGATTACTGTTATTTTTATTAAATTTTAATAAG
257 AGTG--CTTAGAAAAAATGTTAGTTAGGTAGATGATAAC---TATATTTATTAAATGATAATAAG
* *
25963300 ATTATTATTAAACATAATTTAATAAAAATAAAAATAAATAATTTAATAACATTTTTAATATAATA
317 ATTATTAATAAACATAATTTAATAAAAATAAAAATAAATAA-TTAATAACATTATTAATATAATA
25963365 TTTAATAATAATTTTAATATAATATTATTATTAAGAATATTTCACTGCCTAATATATTTGCTTCA
381 TTTAATAATAATTTTAATATAATATTATTATTAAGAATATTTCACTGCCTAATATATTTGCTTCA
25963430 ATCTAACCTCTCACATCTTCTCTTACAAACAAGTCACAATCGCAAATATAAAAATGGGTTTTACA
446 ATCTAACCTCTCACATCTTCTCTTACAAACAAGTCACAATCGCAAATATAAAAATGGGTTTTACA
25963495 TACGATATGATAATCCTCTAATAACATTTTATTTTCATAGAAGGCGAATTTTTTATATTTTATTT
511 TACGATATGATAATCCTCTAATAACATTTTATTTTCATAGAAGGCGAATTTTTTATATTTTATTT
25963560 TATCCTTTATAATAGCATGATAACAACAATTAATTATTAGGTATACTCTTTAATATATTAATTAT
576 TATCCTTTATAATAGCATGATAACAACAATTAATTATTAGGTATACTCTTTAATATATTAATTAT
25963625 TTATAGCAATCTTTGGTGAAATAAAAACCTTCAAATTTTACATAAAAATTACTAAATTTTAGTGA
641 TTATAGCAATCTTTGGTGAAATAAAAACCTTCAAATTTTACATAAAAATTACTAAATTTTAGTGA
25963690 TATTAGTTCTTTTCATATGTGAAAAAAAAAAATCAAAACTCATAGTTCTTTATGTTATTCAAAAA
706 TATTAGTTCTTTTCATATGTGAAAAAAAAAAATCAAAACTCATAGTTCTTTATGTTATTCAAAAA
25963755 CATGAAGAAAACTCGAC
771 CATGAAGAAAACTCGAC
25963772 AT
1 AT
25963774 AAATATAGAA
Statistics
Matches: 750, Mismatches: 18, Indels: 36
0.93 0.02 0.04
Matches are distributed among these distances:
771 255 0.34
776 1 0.00
777 2 0.00
779 3 0.00
780 13 0.02
781 7 0.01
783 1 0.00
784 3 0.00
785 8 0.01
786 2 0.00
787 1 0.00
788 1 0.00
789 7 0.01
790 4 0.01
792 1 0.00
793 2 0.00
794 8 0.01
795 15 0.02
796 1 0.00
797 415 0.55
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (787 bp):
ATTTCACAATTTTCGACGAAGAGAATTTTTAGGATGTTATAGAGTGTTTCGATGTCCTGATAATA
AGAAGGTAGGCGTGTCGAATATGTTAACTCATGATCACTTACACCATGTTTGGTTCGGGTGAATG
GAATAGAGCTGTAATCAATAATTCAATTATTTGGTTCAATGGAATGAAATAGAATTGTAATAGTA
TTCTTGTGTTTGGTTGAATAGAATAGATGTTGTAATAGCATAAGGAAAAGGGCTTAAATGAAGTG
CTTAGAAAAAATGTTAGTTAGGTAGATGATAACTATATTTATTAAATGATAATAAGATTATTAAT
AAACATAATTTAATAAAAATAAAAATAAATAATTAATAACATTATTAATATAATATTTAATAATA
ATTTTAATATAATATTATTATTAAGAATATTTCACTGCCTAATATATTTGCTTCAATCTAACCTC
TCACATCTTCTCTTACAAACAAGTCACAATCGCAAATATAAAAATGGGTTTTACATACGATATGA
TAATCCTCTAATAACATTTTATTTTCATAGAAGGCGAATTTTTTATATTTTATTTTATCCTTTAT
AATAGCATGATAACAACAATTAATTATTAGGTATACTCTTTAATATATTAATTATTTATAGCAAT
CTTTGGTGAAATAAAAACCTTCAAATTTTACATAAAAATTACTAAATTTTAGTGATATTAGTTCT
TTTCATATGTGAAAAAAAAAAATCAAAACTCATAGTTCTTTATGTTATTCAAAAACATGAAGAAA
ACTCGAC
Found at i:25963347 original size:12 final size:12
Alignment explanation
Indices: 25963313--25963388 Score: 52
Period size: 12 Copynumber: 6.2 Consensus size: 12
25963303 ATTATTAAAC
25963313 ATAATTTAATAA
1 ATAATTTAATAA
**
25963325 A-AATAAAAATAA
1 ATAAT-TTAATAA
25963337 ATAATTTAATAA
1 ATAATTTAATAA
*
25963349 CAT-TTTTAATATA
1 -ATAATTTAATA-A
25963362 AT-ATTTAAT-A
1 ATAATTTAATAA
25963372 ATAATTTTAATATA
1 ATAA-TTTAATA-A
25963386 ATA
1 ATA
25963389 TTATTATTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
10 3 0.06
11 4 0.08
12 33 0.66
13 6 0.12
14 4 0.08
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAATTTAATAA
Found at i:25963359 original size:24 final size:25
Alignment explanation
Indices: 25963313--25963388 Score: 84
Period size: 24 Copynumber: 3.1 Consensus size: 25
25963303 ATTATTAAAC
* ***
25963313 ATAATTTAATAAAAATAAAAATA-A
1 ATAATTTAATAACAATTTTAATATA
*
25963337 ATAATTTAATAACATTTTTAATATA
1 ATAATTTAATAACAATTTTAATATA
*
25963362 AT-ATTTAATAATAATTTTAATATA
1 ATAATTTAATAACAATTTTAATATA
25963386 ATA
1 ATA
25963389 TTATTATTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 40 0.93
25 3 0.07
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (25 bp):
ATAATTTAATAACAATTTTAATATA
Found at i:25981079 original size:226 final size:226
Alignment explanation
Indices: 25980678--25981180 Score: 979
Period size: 226 Copynumber: 2.2 Consensus size: 226
25980668 GCTAAGTGCC
* * *
25980678 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAAAGGAACGAA
1 GGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAAAGGAACGAA
25980743 GTTATTAGCTTAGATTATTTTAATATGTTCGAATGTGAAATATATATTATTTAAGTATAATGGAA
66 GTTATTAGCTTAGATTATTTTAATATGTTCGAATGTGAAATATATATTATTTAAGTATAATGGAA
25980808 GTTAAATATTATGATGGTAGTAGTTGAATCTATAATATAAAGATATATATATATAAATGTATTCG
131 GTTAAATATTATGATGGTAGTAGTTGAATCTATAATATAAAGATATATATATATAAATGTATTCG
25980873 GTTGAATCATTGAATTATCAAGTTTGAAATT
196 GTTGAATCATTGAATTATCAAGTTTGAAATT
25980904 GGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAAAGGAACGAA
1 GGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAAAGGAACGAA
25980969 GTTATTAGCTTAGATTATTTTAATATGTTCGAATGTGAAATATATATTATTTAAGTATAATGGAA
66 GTTATTAGCTTAGATTATTTTAATATGTTCGAATGTGAAATATATATTATTTAAGTATAATGGAA
25981034 GTTAAATATTATGATGGTAGTAGTTGAATCTATAATATAAAGATATATATATATAAATGTATTCG
131 GTTAAATATTATGATGGTAGTAGTTGAATCTATAATATAAAGATATATATATATAAATGTATTCG
25981099 GTTGAATCATTGAATTATCAAGTTTGAAATT
196 GTTGAATCATTGAATTATCAAGTTTGAAATT
25981130 GGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGA
1 GGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGA
25981181 GTCAGGCTAT
Statistics
Matches: 274, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
226 274 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.35
Consensus pattern (226 bp):
GGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAAAGGAACGAA
GTTATTAGCTTAGATTATTTTAATATGTTCGAATGTGAAATATATATTATTTAAGTATAATGGAA
GTTAAATATTATGATGGTAGTAGTTGAATCTATAATATAAAGATATATATATATAAATGTATTCG
GTTGAATCATTGAATTATCAAGTTTGAAATT
Found at i:25981192 original size:41 final size:41
Alignment explanation
Indices: 25981130--25981256 Score: 182
Period size: 41 Copynumber: 3.1 Consensus size: 41
25981120 GTTTGAAATT
*
25981130 GGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
* * * * * *
25981171 GGTGATCTGAGTCAGGCTATAAGCCTAGTAGGCTAAATGCC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
*
25981212 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGTC
1 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
25981253 GGTG
1 GGTG
25981257 TCTAAATATG
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (41 bp):
GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
Found at i:25984328 original size:18 final size:19
Alignment explanation
Indices: 25984305--25984354 Score: 75
Period size: 18 Copynumber: 2.6 Consensus size: 19
25984295 TAAGGAACTT
25984305 TGGTATCGATAAAAA-ATA
1 TGGTATCGATAAAAACATA
25984323 TGGTATCGATAAAAATCATA
1 TGGTATCGATAAAAA-CATA
25984343 TGGATATCGATA
1 TGG-TATCGATA
25984355 CTTTTTGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 15 0.52
20 6 0.21
21 8 0.28
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.30
Consensus pattern (19 bp):
TGGTATCGATAAAAACATA
Found at i:25987842 original size:7 final size:7
Alignment explanation
Indices: 25987832--25987862 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
25987822 TTTATATTAT
25987832 ATATATG
1 ATATATG
25987839 ATATATG
1 ATATATG
25987846 ATATATG
1 ATATATG
25987853 ATATATG
1 ATATATG
25987860 ATA
1 ATA
25987863 ACATAGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (7 bp):
ATATATG
Found at i:25991544 original size:3 final size:3
Alignment explanation
Indices: 25991536--25991620 Score: 170
Period size: 3 Copynumber: 28.3 Consensus size: 3
25991526 GTTTCGGTGG
25991536 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
25991584 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
25991621 ACGCCATTAA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 82 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:26002228 original size:27 final size:27
Alignment explanation
Indices: 26002198--26002258 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
26002188 ATTTTTAAAG
* *
26002198 AAAAATAGAAACTTTTGAAACAATA-TA
1 AAAAATAGAAAATTTT-AAACAAAATTA
* *
26002225 AAAAATATAAAATTTTAAATAAAATTA
1 AAAAATAGAAAATTTTAAACAAAATTA
26002252 AAAAATA
1 AAAAATA
26002259 ATTAAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (27 bp):
AAAAATAGAAAATTTTAAACAAAATTA
Found at i:26021111 original size:27 final size:27
Alignment explanation
Indices: 26021065--26021187 Score: 120
Period size: 27 Copynumber: 4.6 Consensus size: 27
26021055 GTACGTTATC
* * * * *
26021065 AAGGCATTCTTTTTAGAGTTTTCCATG
1 AAGGCATTCCTTTCAGAGTCTACCACG
* * * *
26021092 AAGGCATTCCTTTCAAAGTTTTCCATG
1 AAGGCATTCCTTTCAGAGTCTACCACG
* *
26021119 AATGCATTCCATTCAGAGTCTACCACG
1 AAGGCATTCCTTTCAGAGTCTACCACG
* *
26021146 AAGGCATTCCCTTCAGAGTCTACCACA
1 AAGGCATTCCTTTCAGAGTCTACCACG
*
26021173 AAGGCATTTCTTTCA
1 AAGGCATTCCTTTCA
26021188 TATATTTCCA
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (27 bp):
AAGGCATTCCTTTCAGAGTCTACCACG
Found at i:26022964 original size:16 final size:16
Alignment explanation
Indices: 26022940--26022976 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26022930 TGGTTCACTA
* *
26022940 TAATAGAATAGGGTTG
1 TAATTGAATAGAGTTG
26022956 TAATTGAATAGAGTTG
1 TAATTGAATAGAGTTG
26022972 TAATT
1 TAATT
26022977 AGTAATTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (16 bp):
TAATTGAATAGAGTTG
Found at i:26023929 original size:266 final size:266
Alignment explanation
Indices: 26023105--26023936 Score: 1506
Period size: 266 Copynumber: 3.1 Consensus size: 266
26023095 GAATTTCTTT
26023105 CGCTCATCCTCAATTAAATCTTCTACTTCCATATGTTAAATTTTAAAATATCAAAAAGTTATAAC
1 CGCTCATCCTCAATTAAATCTTCTACTTCCATATGTTAAATTTTAAAATATCAAAAAGTTATAAC
26023170 ATTGTAATGGTATTTTGTCATGTCATTATACCATCCAAATATTACAAACACAAAAAGTTACCAAA
66 ATTGTAATGGTATTTTGTCATGTCATTATACCATCCAAATATTACAAACACAAAAAGTTACCAAA
26023235 ATATCACCAACACAACCATGATTTTTAATGGTCAGTAAGAAATCTTCTGACCCATTCCAATCGCA
131 ATATCACCAACACAACCATGATTTTTAATGGTCAGTAAGAAATCTTCTGACCCATTCCAATCGCA
26023300 TAAAAGAAGGTAAACTAAAGAAAATGAGCATTTGCGTTGGATGGTTTGGAATTCTGCTTAACACG
196 TAAAAGAAGGTAAACTAAAGAAAATGAGCATTTGCGTTGGATGGTTTGGAATTCTGCTTAACACG
26023365 TGATAG
261 TGATAG
** * * * * * *
26023371 CGCTTTTCATTAGCTTATAT-GTCATA-ATCCATATGTTAAATTTTAAAATATCAAAAAGTTATA
1 CGCTCATCCTCA-ATTAAATCTTC-TACTTCCATATGTTAAATTTTAAAATATCAAAAAGTTATA
26023434 ACATTGTAATGGTATTTTGTCATGTCATTATACCATCCAAATATTACAAACACAAAAAGTTACCA
64 ACATTGTAATGGTATTTTGTCATGTCATTATACCATCCAAATATTACAAACACAAAAAGTTACCA
26023499 AAATATCACCAACACAACCATGATTTTTAATGGTCAGTAAGAAATCTTCTGACCCATTCCAATCG
129 AAATATCACCAACACAACCATGATTTTTAATGGTCAGTAAGAAATCTTCTGACCCATTCCAATCG
26023564 CATAAAAGAAGGTAAACTAAAGAAAATGAGCATTTGCGTTGGATGGTTTGGAATTCTGCTTAACA
194 CATAAAAGAAGGTAAACTAAAGAAAATGAGCATTTGCGTTGGATGGTTTGGAATTCTGCTTAACA
26023629 CGTGATAG
259 CGTGATAG
26023637 CGCTCATCCTCAATTAAATCTTCTACTTCCATATGTTAAATTTTAAAATATCAAAAAGTTATAAC
1 CGCTCATCCTCAATTAAATCTTCTACTTCCATATGTTAAATTTTAAAATATCAAAAAGTTATAAC
* *
26023702 ATTGTAATGGCATTCTGTCATGTCATTATACCATCCAAATATTACAAACACAAAAAGTTACCAAA
66 ATTGTAATGGTATTTTGTCATGTCATTATACCATCCAAATATTACAAACACAAAAAGTTACCAAA
26023767 ATATCACCAACACAACCATGATTTTTAATGGTCAGTAAGAAATCTTCTGACCCATTCCAATCGCA
131 ATATCACCAACACAACCATGATTTTTAATGGTCAGTAAGAAATCTTCTGACCCATTCCAATCGCA
*
26023832 TAAAAGAAGGTAAACTAAAGAAAATGAGCATTTGTGTTGGATGGTTTGGAATTCTGCTTAACACG
196 TAAAAGAAGGTAAACTAAAGAAAATGAGCATTTGCGTTGGATGGTTTGGAATTCTGCTTAACACG
26023897 TGATAG
261 TGATAG
* *
26023903 AGCTCATCCTCAGTTAAATCTTCTACTTCACATA
1 CGCTCATCCTCAATTAAATCTTCTACTTC-CATA
26023937 AGGTTTAATA
Statistics
Matches: 540, Mismatches: 21, Indels: 9
0.95 0.04 0.02
Matches are distributed among these distances:
265 7 0.01
266 522 0.97
267 11 0.02
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (266 bp):
CGCTCATCCTCAATTAAATCTTCTACTTCCATATGTTAAATTTTAAAATATCAAAAAGTTATAAC
ATTGTAATGGTATTTTGTCATGTCATTATACCATCCAAATATTACAAACACAAAAAGTTACCAAA
ATATCACCAACACAACCATGATTTTTAATGGTCAGTAAGAAATCTTCTGACCCATTCCAATCGCA
TAAAAGAAGGTAAACTAAAGAAAATGAGCATTTGCGTTGGATGGTTTGGAATTCTGCTTAACACG
TGATAG
Found at i:26026581 original size:21 final size:21
Alignment explanation
Indices: 26026557--26026625 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
26026547 TATGAATGCC
26026557 ACACACGTCTGTGTGGAGGCT
1 ACACACGTCTGTGTGGAGGCT
* * *
26026578 ACACATGTCTGTGTGTAGGCC
1 ACACACGTCTGTGTGGAGGCT
* * *
26026599 ACACACGCCCGTGTAGAGGCT
1 ACACACGTCTGTGTGGAGGCT
26026620 ACACAC
1 ACACAC
26026626 ACCCATGTGG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (21 bp):
ACACACGTCTGTGTGGAGGCT
Found at i:26026638 original size:21 final size:21
Alignment explanation
Indices: 26026589--26026638 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
26026579 CACATGTCTG
* * *
26026589 TGTGTAGGCCACACACGCCCG
1 TGTGGAGGCCACACACACCCA
* *
26026610 TGTAGAGGCTACACACACCCA
1 TGTGGAGGCCACACACACCCA
26026631 TGTGGAGG
1 TGTGGAGG
26026639 GGAGACACGC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (21 bp):
TGTGGAGGCCACACACACCCA
Found at i:26026856 original size:65 final size:65
Alignment explanation
Indices: 26026773--26026907 Score: 270
Period size: 65 Copynumber: 2.1 Consensus size: 65
26026763 CAGGCCGTGT
26026773 GGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCGCCCGTGTGC
1 GGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCGCCCGTGTGC
26026838 GGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCGCCCGTGTGC
1 GGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCGCCCGTGTGC
26026903 GGCAC
1 GGCAC
26026908 ACACCCGTGT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 70 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (65 bp):
GGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCGCCCGTGTGC
Found at i:26027011 original size:105 final size:106
Alignment explanation
Indices: 26026829--26027040 Score: 417
Period size: 105 Copynumber: 2.0 Consensus size: 106
26026819 GTGTGTACCG
26026829 CCCGTGTGCGGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCG
1 CCCGTGTGCGGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCG
26026894 CCCGTGTGCGGCACACACCCGTGTCGCCACTC-TGTGGTCA
66 CCCGTGTGCGGCACACACCCGTGTCGCCACTCATGTGGTCA
26026934 CCCGTGTGCGGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCG
1 CCCGTGTGCGGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCG
26026999 CCCGTGTGCGGCACACACCCGTGTCGCCACTCATGTGGTCA
66 CCCGTGTGCGGCACACACCCGTGTCGCCACTCATGTGGTCA
26027040 C
1 C
26027041 AAAACCACAT
Statistics
Matches: 106, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 97 0.92
106 9 0.08
ACGTcount: A:0.24, C:0.33, G:0.23, T:0.20
Consensus pattern (106 bp):
CCCGTGTGCGGCACTAAAAATATCAAAAACCCTAAATTCCCAACGGCACATGGTCGTGTGTACCG
CCCGTGTGCGGCACACACCCGTGTCGCCACTCATGTGGTCA
Found at i:26027769 original size:20 final size:20
Alignment explanation
Indices: 26027744--26027783 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26027734 TACCAATCAC
26027744 ATAACTTCTAACCCTAAAAT
1 ATAACTTCTAACCCTAAAAT
26027764 ATAACTTCTAACCCTAAAAT
1 ATAACTTCTAACCCTAAAAT
26027784 TTGAGGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (20 bp):
ATAACTTCTAACCCTAAAAT
Found at i:26030357 original size:25 final size:25
Alignment explanation
Indices: 26030316--26030364 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
26030306 TCGTTTTGTA
*
26030316 TTATATATTTTTATATTTTTATAAT
1 TTATATATTTTTATATTTCTATAAT
26030341 TTATATATATTTT-TATTTCTATAA
1 TTATATAT-TTTTATATTTCTATAA
26030365 ATTGAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (25 bp):
TTATATATTTTTATATTTCTATAAT
Found at i:26033417 original size:11 final size:11
Alignment explanation
Indices: 26033401--26033425 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26033391 GGGCCTGCAA
26033401 AATAGACTTGT
1 AATAGACTTGT
26033412 AATAGACTTGT
1 AATAGACTTGT
26033423 AAT
1 AAT
26033426 GGCATAGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (11 bp):
AATAGACTTGT
Found at i:26036896 original size:26 final size:27
Alignment explanation
Indices: 26036867--26036923 Score: 96
Period size: 28 Copynumber: 2.1 Consensus size: 27
26036857 TAAAAAAATA
26036867 TGTGCTAAATATCTTCCCTTAACAAATG
1 TGTGCTAAATATCTTCCCTTAACAAA-G
*
26036895 TGTGCTAAATATCTTCCCTTAACTAAG
1 TGTGCTAAATATCTTCCCTTAACAAAG
26036922 TG
1 TG
26036924 GCAATCCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (27 bp):
TGTGCTAAATATCTTCCCTTAACAAAG
Found at i:26036902 original size:28 final size:28
Alignment explanation
Indices: 26036862--26036917 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26036852 TATGCTAAAA
26036862 AAATATGTGCTAAATATCTTCCCTTAAC
1 AAATATGTGCTAAATATCTTCCCTTAAC
*
26036890 AAATGTGTGCTAAATATCTTCCCTTAAC
1 AAATATGTGCTAAATATCTTCCCTTAAC
26036918 TAAGTGGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (28 bp):
AAATATGTGCTAAATATCTTCCCTTAAC
Found at i:26043096 original size:26 final size:25
Alignment explanation
Indices: 26043048--26043097 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
26043038 TAAAGACTTT
* *
26043048 CTAGATAGCTCACCACTAGGGCTTC
1 CTAGATAACTCACCACTAAGGCTTC
*
26043073 CTAGATAACTTCACCATTAAGGCTT
1 CTAGATAAC-TCACCACTAAGGCTT
26043098 TCCAAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (25 bp):
CTAGATAACTCACCACTAAGGCTTC
Found at i:26044383 original size:18 final size:18
Alignment explanation
Indices: 26044360--26044396 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26044350 TGCTCATGGA
26044360 AACCGAGCGTTCTATACT
1 AACCGAGCGTTCTATACT
26044378 AACCGAGCGTTCTATACT
1 AACCGAGCGTTCTATACT
26044396 A
1 A
26044397 TGGCAATGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (18 bp):
AACCGAGCGTTCTATACT
Found at i:26047672 original size:21 final size:22
Alignment explanation
Indices: 26047630--26047682 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
26047620 GGTTGAAACC
*
26047630 AAAAATGAATCGTGTGTTTGAAT
1 AAAAATGAATC-TGTATTTGAAT
26047653 AAAAATGAAT-TGTATTTGAAT
1 AAAAATGAATCTGTATTTGAAT
*
26047674 AGAAATGAA
1 AAAAATGAA
26047683 AGGAATTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 18 0.64
23 10 0.36
ACGTcount: A:0.47, C:0.02, G:0.19, T:0.32
Consensus pattern (22 bp):
AAAAATGAATCTGTATTTGAAT
Found at i:26047987 original size:26 final size:26
Alignment explanation
Indices: 26047948--26048013 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
26047938 TATTTTCTCG
26047948 AAATTTTACTAAGGGCAAAATCATCA
1 AAATTTTACTAAGGGCAAAATCATCA
* *
26047974 AAATTTTA-TCAAGGGTAAAATCGTCA
1 AAATTTTACT-AAGGGCAAAATCATCA
* *
26048000 AACTTTTGCTAAGG
1 AAATTTTACTAAGG
26048014 ATAAAATAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 1 0.03
26 32 0.94
27 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (26 bp):
AAATTTTACTAAGGGCAAAATCATCA
Found at i:26050221 original size:36 final size:36
Alignment explanation
Indices: 26050174--26050247 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
26050164 CACTGAAAAC
26050174 AAACTGAATGGAAACAACTGTAAGAAAAGTAAAAGG
1 AAACTGAATGGAAACAACTGTAAGAAAAGTAAAAGG
26050210 AAACTGAATGGAAACAACTGTAAGAAAAGTAAAAGG
1 AAACTGAATGGAAACAACTGTAAGAAAAGTAAAAGG
26050246 AA
1 AA
26050248 CTTGATAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.57, C:0.08, G:0.22, T:0.14
Consensus pattern (36 bp):
AAACTGAATGGAAACAACTGTAAGAAAAGTAAAAGG
Found at i:26061712 original size:38 final size:38
Alignment explanation
Indices: 26061661--26061751 Score: 110
Period size: 38 Copynumber: 2.4 Consensus size: 38
26061651 AAAAACAGTT
* *
26061661 GACATGTTTAACATGTATTCAGTTCAACAGTAGCAATA
1 GACATGCTTAACATGTATTCAGTTCAACAGTAACAATA
** * *
26061699 GACATGCTTAACATGTATTTGGTTTAACAGTAACAGTA
1 GACATGCTTAACATGTATTCAGTTCAACAGTAACAATA
* *
26061737 GGCATGCTAAACATG
1 GACATGCTTAACATG
26061752 CAATCAGTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (38 bp):
GACATGCTTAACATGTATTCAGTTCAACAGTAACAATA
Found at i:26062641 original size:18 final size:20
Alignment explanation
Indices: 26062599--26062641 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
26062589 AAAATATGAT
26062599 GCAAATAAGAGAAAAGAAAA
1 GCAAATAAGAGAAAAGAAAA
*
26062619 G-AAAT-AGAGAGAAG-AAA
1 GCAAATAAGAGAAAAGAAAA
26062636 GCAAAT
1 GCAAAT
26062642 TTCTAATAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 4 0.19
20 1 0.05
ACGTcount: A:0.65, C:0.05, G:0.23, T:0.07
Consensus pattern (20 bp):
GCAAATAAGAGAAAAGAAAA
Found at i:26068709 original size:22 final size:22
Alignment explanation
Indices: 26068679--26068720 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
26068669 TTTGATAAAC
*
26068679 AAAAGAAAGGGTTTTTTTTTCT
1 AAAAAAAAGGGTTTTTTTTTCT
26068701 AAAAAAAAGGGTTTTTTTTT
1 AAAAAAAAGGGTTTTTTTTT
26068721 TTTTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (22 bp):
AAAAAAAAGGGTTTTTTTTTCT
Found at i:26080601 original size:23 final size:22
Alignment explanation
Indices: 26080559--26080605 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
26080549 AATATGTTAA
26080559 AAATATTTTTATGTATTATTTG
1 AAATATTTTTATGTATTATTTG
*
26080581 AAATTTTTTTAT-TATAATATTTG
1 AAATATTTTTATGTAT--TATTTG
26080604 AA
1 AA
26080606 TTGATAAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 3 0.14
22 11 0.50
23 8 0.36
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.57
Consensus pattern (22 bp):
AAATATTTTTATGTATTATTTG
Found at i:26097766 original size:17 final size:17
Alignment explanation
Indices: 26097729--26097766 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26097719 ATTTAACCAT
*
26097729 TTTTATTTTTATTATAT
1 TTTTATTTTTATTATAA
26097746 TTTTATTTTTAGTT-TAA
1 TTTTATTTTTA-TTATAA
26097763 TTTT
1 TTTT
26097767 TGTTTTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATTATAA
Found at i:26106659 original size:19 final size:19
Alignment explanation
Indices: 26106623--26106660 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26106613 TTTGGTATAG
*
26106623 GGACTAAATCGTAAAAACT
1 GGACTAAATCGAAAAAACT
26106642 GGACTAAATC-AAATAAACT
1 GGACTAAATCGAAA-AAACT
26106661 TCAAACTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (19 bp):
GGACTAAATCGAAAAAACT
Found at i:26117318 original size:23 final size:23
Alignment explanation
Indices: 26117287--26117330 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26117277 GCTTGAGAGA
26117287 AATACTTTT-TCTCGAAAAAAAAG
1 AATACTTTTATCTC-AAAAAAAAG
*
26117310 AATATTTTTATCTCAAAAAAA
1 AATACTTTTATCTCAAAAAAA
26117331 GTGTGTGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (23 bp):
AATACTTTTATCTCAAAAAAAAG
Found at i:26118692 original size:2 final size:2
Alignment explanation
Indices: 26118685--26118726 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
26118675 TGTATATTTG
26118685 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26118727 TGCTATAAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26129126 original size:50 final size:53
Alignment explanation
Indices: 26129015--26129129 Score: 137
Period size: 56 Copynumber: 2.2 Consensus size: 53
26129005 ATTCGGGTAA
* *
26129015 AGAGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCA-CGAG--TATG
* **
26129071 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCA-C-CGAG-ATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCACGAGTATG
26129121 AGAGGTCCC
1 AGAGGTCCC
26129130 NNNNNNNNNN
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
50 12 0.22
53 3 0.06
55 1 0.02
56 38 0.70
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (53 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCACGAGTATG
Found at i:26134465 original size:18 final size:18
Alignment explanation
Indices: 26134442--26134477 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26134432 AATATTTATG
26134442 GTAGAAGTTCTTGAATAA
1 GTAGAAGTTCTTGAATAA
*
26134460 GTAGAATTTCTTGAATAA
1 GTAGAAGTTCTTGAATAA
26134478 ATGATCTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.36
Consensus pattern (18 bp):
GTAGAAGTTCTTGAATAA
Found at i:26134815 original size:123 final size:124
Alignment explanation
Indices: 26134595--26134832 Score: 379
Period size: 123 Copynumber: 1.9 Consensus size: 124
26134585 AAAATTCGGT
*
26134595 ATCGAGTTCAGGGATTAAATTGAATAAATTAGAAAAGTATAGAGACTAAAGTGCAATTATCTTAT
1 ATCGAGTTCAGGGATTAAATTGAATAAATTAGAAAAGTATAGAGACTAAAGTGCAATTATCCTAT
* * * ** *
26134660 TTTATTTTTATGGAAAGGACTTAATGGTAATTTTTCCATTACTTAAAAAATAAAAAATC
66 TTTATCTTGATGGAAAGAACTTAATGACAATTTTACCATTACTTAAAAAATAAAAAATC
* * *
26134719 ATCGAGTTTAGGGATTAAATT-AATAAGTTAGAAAAGTATAGAGACTAAAGTGCAGTTATCCTAT
1 ATCGAGTTCAGGGATTAAATTGAATAAATTAGAAAAGTATAGAGACTAAAGTGCAATTATCCTAT
26134783 TTTATCTTGATGGAAAGAACTTAATGACAATTTTACCATTACTTAAAAAA
66 TTTATCTTGATGGAAAGAACTTAATGACAATTTTACCATTACTTAAAAAA
26134833 ATCAAAAGTT
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
123 84 0.81
124 20 0.19
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (124 bp):
ATCGAGTTCAGGGATTAAATTGAATAAATTAGAAAAGTATAGAGACTAAAGTGCAATTATCCTAT
TTTATCTTGATGGAAAGAACTTAATGACAATTTTACCATTACTTAAAAAATAAAAAATC
Found at i:26134892 original size:12 final size:13
Alignment explanation
Indices: 26134871--26134899 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26134861 TATTTTCATT
26134871 AAATTATTATTTA
1 AAATTATTATTTA
26134884 AAATT-TTATTTA
1 AAATTATTATTTA
26134896 AAAT
1 AAAT
26134900 AACAGTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAATTATTATTTA
Found at i:26148985 original size:23 final size:23
Alignment explanation
Indices: 26148935--26149033 Score: 94
Period size: 23 Copynumber: 4.3 Consensus size: 23
26148925 CTTAAGGGCG
* * *
26148935 TTAC-GAATACGCCACACAGGCA
1 TTACAGAATATGCCACAAAGGCT
* * *
26148957 TCACAGAATATTCCACAAAGACT
1 TTACAGAATATGCCACAAAGGCT
**
26148980 TTACAGAATATGCCACGTAGGCT
1 TTACAGAATATGCCACAAAGGCT
26149003 TTATC-GAATATGCCACAAAGGCT
1 TTA-CAGAATATGCCACAAAGGCT
*
26149026 TTATAGAA
1 TTACAGAA
26149034 AATTACGTGT
Statistics
Matches: 60, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
22 3 0.05
23 56 0.93
24 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (23 bp):
TTACAGAATATGCCACAAAGGCT
Found at i:26150450 original size:17 final size:17
Alignment explanation
Indices: 26150428--26150464 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
26150418 TTAGTTGATA
26150428 CTCGCTTATCTCTCAAC
1 CTCGCTTATCTCTCAAC
*
26150445 CTCGCTTATCTCTCGAC
1 CTCGCTTATCTCTCAAC
26150462 CTC
1 CTC
26150465 ATTTAGCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.43, G:0.08, T:0.35
Consensus pattern (17 bp):
CTCGCTTATCTCTCAAC
Found at i:26153602 original size:29 final size:29
Alignment explanation
Indices: 26153570--26153638 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
26153560 AAAAAGTTTG
*
26153570 GTTCGGTTAATTTTTTTGAAA-AAATTTCA
1 GTTCGATTAATTTTTTT-AAATAAATTTCA
26153599 GTTCGATTAATTTTTTTAAATAAATTTC-
1 GTTCGATTAATTTTTTTAAATAAATTTCA
26153627 GTTTCGATTAAT
1 G-TTCGATTAAT
26153639 AGTTAAGGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 4 0.11
29 33 0.89
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (29 bp):
GTTCGATTAATTTTTTTAAATAAATTTCA
Found at i:26158901 original size:35 final size:35
Alignment explanation
Indices: 26158862--26158958 Score: 113
Period size: 35 Copynumber: 2.8 Consensus size: 35
26158852 ATTTATTGAT
* * *
26158862 ATTATGTTTCGCATATTGAGCATGCTATTATTCTG
1 ATTATGATTCGCATATTAAGCATGCCATTATTCTG
* *
26158897 ATTATGATTCGCATGTTAAGCATGCCATTATTTTG
1 ATTATGATTCGCATATTAAGCATGCCATTATTCTG
* * * *
26158932 ATTTTGATTCGTATGTTAAACATGCCA
1 ATTATGATTCGCATATTAAGCATGCCA
26158959 CTGTGATAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.43
Consensus pattern (35 bp):
ATTATGATTCGCATATTAAGCATGCCATTATTCTG
Found at i:26160386 original size:16 final size:15
Alignment explanation
Indices: 26160346--26160397 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 15
26160336 AATATAGATT
*
26160346 ACTATAGATTGTG-A
1 ACTATAGATTCTGAA
* *
26160360 ACTCTAAATTCTGAAA
1 ACTATAGATTCTG-AA
26160376 ACTATAGATTCTGAA
1 ACTATAGATTCTGAA
26160391 ACTATAG
1 ACTATAG
26160398 TGACGAAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 10 0.32
15 9 0.29
16 12 0.39
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (15 bp):
ACTATAGATTCTGAA
Found at i:26166595 original size:16 final size:16
Alignment explanation
Indices: 26166563--26166595 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26166553 TAATTCTGAT
26166563 TCACATGATAAACATG
1 TCACATGATAAACATG
26166579 TCACTATGATAAA-ATG
1 TCAC-ATGATAAACATG
26166595 T
1 T
26166596 AATAAGATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (16 bp):
TCACATGATAAACATG
Found at i:26167405 original size:113 final size:114
Alignment explanation
Indices: 26167264--26167491 Score: 440
Period size: 113 Copynumber: 2.0 Consensus size: 114
26167254 GCCAAACTCA
26167264 ACTAACGATTGTATTTTGAAACTCAATACTTTGTTTTCAAAACTCAACACTACCTACTCATTAAA
1 ACTAACGATTGTATTTTGAAACTCAATACTTTGTTTTCAAAACTCAACACTACCTACTCATTAAA
26167329 CTGAGATTTTACAAGATATATTAAATATACGTTTTC-AATGACGAATGT
66 CTGAGATTTTACAAGATATATTAAATATACGTTTTCAAATGACGAATGT
26167377 ACTAACGATTGTATTTTGAAACTCAATACTTTGTTTTCAAAACTCAACACTACCTACTCATTAAA
1 ACTAACGATTGTATTTTGAAACTCAATACTTTGTTTTCAAAACTCAACACTACCTACTCATTAAA
26167442 CTGAGATTTTACAAGATATATTAAATATACGTTTTCAAAATGACGAATGT
66 CTGAGATTTTACAAGATATATTAAATATACGTTTTC-AAATGACGAATGT
26167492 GTTATGTTAT
Statistics
Matches: 113, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
113 101 0.89
115 12 0.11
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (114 bp):
ACTAACGATTGTATTTTGAAACTCAATACTTTGTTTTCAAAACTCAACACTACCTACTCATTAAA
CTGAGATTTTACAAGATATATTAAATATACGTTTTCAAATGACGAATGT
Found at i:26168708 original size:68 final size:68
Alignment explanation
Indices: 26168599--26168727 Score: 213
Period size: 68 Copynumber: 1.9 Consensus size: 68
26168589 ATCATATTTG
* *
26168599 GGCATGCCACTAATATCCCAATAGTTCTAAATTCCATCTACTTGGGCATTAAGGCTGAGTTCCTT
1 GGCATGCCACCAATATCCCAATAGTTCTAAATTCCATCTACTTGGACATTAAGGCTGAGTTCCTT
26168664 AAT
66 AAT
* * *
26168667 GGCATGCCACCAATATCTCAGTAGTTCTAAATTTCATCTACTTGGACATTAAGGCTGAGTT
1 GGCATGCCACCAATATCCCAATAGTTCTAAATTCCATCTACTTGGACATTAAGGCTGAGTT
26168728 TTATACATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (68 bp):
GGCATGCCACCAATATCCCAATAGTTCTAAATTCCATCTACTTGGACATTAAGGCTGAGTTCCTT
AAT
Found at i:26177899 original size:26 final size:26
Alignment explanation
Indices: 26177870--26177931 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
26177860 ATAGTTACCC
26177870 ATTTTTTAGATT-TAT-TTTTATTTAAT
1 ATTTTTTA-ATTATATATTTTA-TTAAT
**
26177896 ATTTAGTAATTATATATTTTATTAAT
1 ATTTTTTAATTATATATTTTATTAAT
26177922 A-TTTTTAATT
1 ATTTTTTAATT
26177932 TTATGAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
25 10 0.33
26 15 0.50
27 5 0.17
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (26 bp):
ATTTTTTAATTATATATTTTATTAAT
Found at i:26179938 original size:29 final size:26
Alignment explanation
Indices: 26179894--26179947 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 26
26179884 CAATTTCCAC
26179894 ATTTTTTTTTCATTTTTATT-TTGAAT
1 ATTTTTTTTTCATTTTT-TTGTTGAAT
26179920 ATTTATTTTTTCAGCTTTTTTTGTTGAA
1 ATTT-TTTTTTCA--TTTTTTTGTTGAA
26179948 AGGCGACTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 4 0.17
27 8 0.33
28 2 0.08
29 10 0.42
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.69
Consensus pattern (26 bp):
ATTTTTTTTTCATTTTTTTGTTGAAT
Found at i:26184321 original size:27 final size:27
Alignment explanation
Indices: 26184252--26184323 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
26184242 GATGATGGGC
* *
26184252 CTGCCGCAAGCGGCACCAAAGGTGCCT
1 CTGCCACAAGCGGCACCAAAGGTGCCA
* * * * *
26184279 GTGGCAGAGGCAGCACCAAAGGTGCCA
1 CTGCCACAAGCGGCACCAAAGGTGCCA
26184306 CTGCCACAAGCGGCACCA
1 CTGCCACAAGCGGCACCA
26184324 CTTCAATTAT
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.35, G:0.31, T:0.08
Consensus pattern (27 bp):
CTGCCACAAGCGGCACCAAAGGTGCCA
Found at i:26184766 original size:76 final size:78
Alignment explanation
Indices: 26184561--26184768 Score: 219
Period size: 76 Copynumber: 2.6 Consensus size: 78
26184551 GTTTAGTTAT
* *
26184561 TAATAATTATTGTTACTTAGTATTATTGTTAGTAAAAAACTAATATTATTATTATGGTTAGTTAT
1 TAATTATTATTGTTAGTTAGTATTATTGTTAGTAAAAAAC---TATTATTA-T-TGGTTAGTTAT
26184626 TAGGATTAGTAAAAACCC
61 TAGGATTAGTAAAAACCC
* *** * * **
26184644 TAATTATTATT-TTAGTTAGTATGATTGTTAGTTTTTACATTA-TATTATT-GTTAGTTATTATT
1 TAATTATTATTGTTAGTTAGTATTATTGTTAG-TAAAAAACTATTATTATTGGTTAGTTATTAGG
*
26184706 TTTAGT-AAAACCC
65 ATTAGTAAAAACCC
26184719 TAATTATTATTGTTAGTTAGTATTATT-TTGAGTAAAAAACTATTATTATT
1 TAATTATTATTGTTAGTTAGTATTATTGTT-AGTAAAAAACTATTATTATT
26184769 ATTATTGTGT
Statistics
Matches: 104, Mismatches: 17, Indels: 15
0.76 0.12 0.11
Matches are distributed among these distances:
75 25 0.24
76 39 0.38
77 1 0.01
78 1 0.01
79 5 0.05
80 2 0.02
82 18 0.17
83 13 0.12
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.50
Consensus pattern (78 bp):
TAATTATTATTGTTAGTTAGTATTATTGTTAGTAAAAAACTATTATTATTGGTTAGTTATTAGGA
TTAGTAAAAACCC
Found at i:26189045 original size:154 final size:154
Alignment explanation
Indices: 26188495--26189093 Score: 840
Period size: 152 Copynumber: 3.9 Consensus size: 154
26188485 ACTTCAAAAC
* *
26188495 AAATTTAGT-AAAAAACCCTTATTTCGGCCATTTGTTCGTA-TTTTTTCCCGGATTTTATTACTT
1 AAATTTA-TAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTT
* *
26188558 TTAAAAAATATACTATTTTCTATTTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATG
65 TCAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATG
26188623 TATTAATTTAGTGTGTTTTTTAAAT
130 TATTAATTTAGTGTGTTTTTTAAAT
*
26188648 AAA-TTAAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT
1 AAATTTATAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT
* ** *
26188712 CAATAAAAATATATTATTTTCTAATTTTATTATTCGACATTATTTTAGTACATTATGTTTTAAAT
66 C-A-AAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAAT
26188777 GTATTAATTTA--GTG-TTTTTAAAT
129 GTATTAATTTAGTGTGTTTTTTAAAT
* * *
26188800 AAATTT-TAAAAAAACCCTTATTTCGGCCCTTAGTTCGTATTTTTTCCCCGGATTTTATTACTTT
1 AAATTTATAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT
* *
26188864 TAAAAAATATACTATTTTATAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGT
26188929 ATTAATTTAGTGTGTTTTTTAAAT
131 ATTAATTTAGTGTGTTTTTTAAAT
* * * * ** * *
26188953 AAATTTAGTAAAAAAA-CTTTATTTCAGCCCTTTGTTCATATTTTTTTACCGAAGCCTCATT-GT
1 AAATTTA-TAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAA-TTTTATTACT
* * *
26189016 TTCAAAAAATATATTATTTTCGT-ATTTTATTATTTTACGTTATTTTAGTACATTATGTTTTAAA
64 TTCAAAAAATATACTATTTTC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAA
*
26189080 TGCATTAATTTAGT
128 TGTATTAATTTAGT
26189094 AAAAAAAACC
Statistics
Matches: 398, Mismatches: 36, Indels: 23
0.87 0.08 0.05
Matches are distributed among these distances:
150 67 0.17
151 1 0.00
152 102 0.26
153 46 0.12
154 102 0.26
155 80 0.20
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (154 bp):
AAATTTATAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT
CAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGT
ATTAATTTAGTGTGTTTTTTAAAT
Found at i:26189048 original size:16 final size:18
Alignment explanation
Indices: 26189027--26189062 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
26189017 TCAAAAAATA
26189027 TATTATTTT-CG-TATTT
1 TATTATTTTACGTTATTT
26189043 TATTATTTTACGTTATTT
1 TATTATTTTACGTTATTT
26189061 TA
1 TA
26189063 GTACATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 2 0.11
18 7 0.39
ACGTcount: A:0.22, C:0.06, G:0.06, T:0.67
Consensus pattern (18 bp):
TATTATTTTACGTTATTT
Found at i:26189089 original size:304 final size:304
Alignment explanation
Indices: 26188504--26189093 Score: 947
Period size: 305 Copynumber: 1.9 Consensus size: 304
26188494 CAAATTTAGT
*
26188504 AAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTCCCGGATTTTATTACTTTTAAAAAATAT
1 AAAAAACCCTTATTTCGGCCATTAGTTCGTATTTTTTCCCGGATTTTATTACTTTTAAAAAATAT
* *
26188569 ACTATTTTCTATTTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAG
66 ACTATTTTATAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAG
* * *
26188634 TGTGTTTTTTAAATAAATTAAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCCGA
131 TGTGTTTTTTAAATAAATTAAAAAAAAACCCTTATTTCAGCCCTTTGTTCATATTTTTTTACCGA
** *
26188699 ATTTTATTACTTTCAATAAAAATATATTATTTTCTAATTTTATTATTCGACATTATTTTAGTACA
196 ACCTCATTACTTTCAATAAAAATATATTATTTTCTAATTTTATTATTCGACATTATTTTAGTACA
*
26188764 TTATGTTTTAAATGTATTAATTTAGTGTTTTTAAATAAATTTTA
261 TTATGTTTTAAATGCATTAATTTAGTGTTTTTAAATAAATTTTA
*
26188808 AAAAAACCCTTATTTCGGCCCTTAGTTCGTATTTTTTCCCCGGATTTTATTACTTTTAAAAAATA
1 AAAAAACCCTTATTTCGGCCATTAGTTCGTATTTTTT-CCCGGATTTTATTACTTTTAAAAAATA
26188873 TACTATTTTATAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTA
65 TACTATTTTATAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTA
* *
26188938 GTGTGTTTTTTAAATAAATTTAGTAAAAAAA-CTTTATTTCAGCCCTTTGTTCATATTTTTTTAC
130 GTGTGTTTTTTAAATAAA-TTA-AAAAAAAACCCTTATTTCAGCCCTTTGTTCATATTTTTTTAC
* ** *
26189002 CGAAGCCTCATT-GTTTC-A-AAAAATATATTATTTTCGT-ATTTTATTATTTTACGTTATTTTA
193 CGAA-CCTCATTACTTTCAATAAAAATATATTATTTTC-TAATTTTATTATTCGACATTATTTTA
26189063 GTACATTATGTTTTAAATGCATTAATTTAGT
256 GTACATTATGTTTTAAATGCATTAATTTAGT
26189094 AAAAAAAACC
Statistics
Matches: 264, Mismatches: 17, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
304 103 0.39
305 110 0.42
306 40 0.15
307 11 0.04
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (304 bp):
AAAAAACCCTTATTTCGGCCATTAGTTCGTATTTTTTCCCGGATTTTATTACTTTTAAAAAATAT
ACTATTTTATAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAG
TGTGTTTTTTAAATAAATTAAAAAAAAACCCTTATTTCAGCCCTTTGTTCATATTTTTTTACCGA
ACCTCATTACTTTCAATAAAAATATATTATTTTCTAATTTTATTATTCGACATTATTTTAGTACA
TTATGTTTTAAATGCATTAATTTAGTGTTTTTAAATAAATTTTA
Found at i:26189387 original size:26 final size:27
Alignment explanation
Indices: 26189336--26189389 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
26189326 AGTTTTTTCG
* * *
26189336 TGCTAAATAAATTTCATAAAATATATA
1 TGCTAAATAAATATAATAAAACATATA
26189363 TGCTAAATAAA-ATAATAAAACATATA
1 TGCTAAATAAATATAATAAAACATATA
26189389 T
1 T
26189390 AATGTACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (27 bp):
TGCTAAATAAATATAATAAAACATATA
Found at i:26189493 original size:20 final size:20
Alignment explanation
Indices: 26189478--26189522 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
26189468 CCTCTTCTTC
26189478 TTCTTCTCCTTTTCTTTCCT
1 TTCTTCTCCTTTTCTTTCCT
* *
26189498 TTCTTCTCCTTTCCTTTTCT
1 TTCTTCTCCTTTTCTTTCCT
26189518 TTCTT
1 TTCTT
26189523 TTTCTTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (20 bp):
TTCTTCTCCTTTTCTTTCCT
Found at i:26189529 original size:20 final size:20
Alignment explanation
Indices: 26189445--26189530 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 20
26189435 TACCTTATTT
*
26189445 TTTTCTTTCTTTTTCCTTCC
1 TTTTCTTTCTTTTTCTTTCC
* ** *
26189465 CTCCCTCTTCTTCTTCTTCTCC
1 TTTTCT-TTCTTTTTCTT-TCC
26189487 TTTTCTTTCCTTTCTTCTCCTTTCC
1 TTTTCTTT-C-TT-TT-T-CTTTCC
26189512 TTTTCTTTCTTTTTCTTTC
1 TTTTCTTTCTTTTTCTTTC
26189531 TTCTCCTTCT
Statistics
Matches: 50, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
20 8 0.16
21 12 0.24
22 9 0.18
23 4 0.08
24 2 0.04
25 12 0.24
26 3 0.06
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTCTTTCTTTTTCTTTCC
Found at i:26189534 original size:13 final size:13
Alignment explanation
Indices: 26189496--26189552 Score: 60
Period size: 13 Copynumber: 4.1 Consensus size: 13
26189486 CTTTTCTTTC
26189496 CTTTCTTCTCCTTT
1 CTTTCTTCTCC-TT
**
26189510 CCTTTTCTTTCTTTTT
1 -C-TTTC-TTCTCCTT
26189526 CTTTCTTCTCCTT
1 CTTTCTTCTCCTT
26189539 CTTTCTTCTCCTT
1 CTTTCTTCTCCTT
26189552 C
1 C
26189553 AGTCGAATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
13 20 0.56
14 4 0.11
15 2 0.06
16 6 0.17
17 4 0.11
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (13 bp):
CTTTCTTCTCCTT
Found at i:26189547 original size:20 final size:20
Alignment explanation
Indices: 26189470--26189544 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 20
26189460 CTTCCCTCCC
*
26189470 TCTTCTTCTTC-TTCTCCTTT
1 TCTTCTCCTTCTTTCTCC-TT
26189490 TCTT-TCCTT-TCTTCTCCTT
1 TCTTCTCCTTCT-TTCTCCTT
* * *
26189509 TCCTTTTCTTTCTTT-TTCTT
1 T-CTTCTCCTTCTTTCTCCTT
26189529 TCTTCTCCTTCTTTCT
1 TCTTCTCCTTCTTTCT
26189545 TCTCCTTCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
19 18 0.41
20 19 0.43
21 6 0.14
22 1 0.02
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (20 bp):
TCTTCTCCTTCTTTCTCCTT
Found at i:26192446 original size:14 final size:14
Alignment explanation
Indices: 26192427--26192454 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26192417 TATCAAGAAT
26192427 GATGTTTGGATGGA
1 GATGTTTGGATGGA
26192441 GATGTTTGGATGGA
1 GATGTTTGGATGGA
26192455 TTCCTAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (14 bp):
GATGTTTGGATGGA
Found at i:26193214 original size:87 final size:88
Alignment explanation
Indices: 26193068--26193244 Score: 347
Period size: 87 Copynumber: 2.0 Consensus size: 88
26193058 TTTTTTTCTA
26193068 ATCAGAAGATTTAGCTTATATAAATTTTATGTGTTTAAACCTTAAATTTATCATTCATATATATA
1 ATCAGAAGATTTAGCTTATATAAATTTTATGTGTTTAAACCTTAAATTTATCATTCATATATATA
26193133 TATATATACTATA-TAATTTGAG
66 TATATATACTATATTAATTTGAG
26193155 ATCAGAAGATTTAGCTTATATAAATTTTATGTGTTTAAACCTTAAATTTATCATTCATATATATA
1 ATCAGAAGATTTAGCTTATATAAATTTTATGTGTTTAAACCTTAAATTTATCATTCATATATATA
26193220 TATATATACTATATTAATTTGAG
66 TATATATACTATATTAATTTGAG
26193243 AT
1 AT
26193245 TACAATAAAA
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
87 78 0.88
88 11 0.12
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (88 bp):
ATCAGAAGATTTAGCTTATATAAATTTTATGTGTTTAAACCTTAAATTTATCATTCATATATATA
TATATATACTATATTAATTTGAG
Found at i:26194176 original size:22 final size:22
Alignment explanation
Indices: 26194151--26194195 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
26194141 AATGTTAATT
26194151 ATGTG-TTGAATGATTTTTTTGG
1 ATGTGCTT-AATGATTTTTTTGG
*
26194173 ATGTGCCTTTATGATTTTTTTGG
1 ATGTG-CTTAATGATTTTTTTGG
26194196 GTAAATTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 13 0.65
24 2 0.10
ACGTcount: A:0.16, C:0.04, G:0.24, T:0.56
Consensus pattern (22 bp):
ATGTGCTTAATGATTTTTTTGG
Found at i:26196481 original size:10 final size:11
Alignment explanation
Indices: 26196458--26196492 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
26196448 ATTTAAAACG
26196458 AAATAAAAGAA
1 AAATAAAAGAA
26196469 AAATAAAAGAA
1 AAATAAAAGAA
*
26196480 AATAAAAAAGAA
1 AA-ATAAAAGAA
26196492 A
1 A
26196493 TATATGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.59
12 9 0.41
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (11 bp):
AAATAAAAGAA
Found at i:26198555 original size:30 final size:28
Alignment explanation
Indices: 26198483--26198559 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
26198473 GCGCGCGTCA
* *
26198483 CGATTTAGTCCCTTTTGTTTTTTTTATTT
1 CGATTTAGT-CCTTTTTTTTTTTTTACTT
* *
26198512 CGATTTCGCCCTTTATTTTTTCTTTTACTT
1 CGATTTAGTCCTTT-TTTTTT-TTTTACTT
*
26198542 CTATTTAGTCCTTTTTTT
1 CGATTTAGTCCTTTTTTT
26198560 AACATATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 5 0.13
29 16 0.41
30 18 0.46
ACGTcount: A:0.10, C:0.18, G:0.08, T:0.64
Consensus pattern (28 bp):
CGATTTAGTCCTTTTTTTTTTTTTACTT
Found at i:26198603 original size:16 final size:17
Alignment explanation
Indices: 26198566--26198607 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
26198556 TTTTAACATA
26198566 TATATAT-TAAATACTT
1 TATATATGTAAATACTT
* *
26198582 TTTATATGTACATA-TT
1 TATATATGTAAATACTT
26198598 TATATATGTA
1 TATATATGTA
26198608 TATCTATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (17 bp):
TATATATGTAAATACTT
Found at i:26198860 original size:15 final size:15
Alignment explanation
Indices: 26198840--26198870 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26198830 TATTATTCGT
*
26198840 TTTTTGCTCATATTA
1 TTTTTGCTCACATTA
26198855 TTTTTGCTCACATTA
1 TTTTTGCTCACATTA
26198870 T
1 T
26198871 CATATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (15 bp):
TTTTTGCTCACATTA
Found at i:26198873 original size:23 final size:20
Alignment explanation
Indices: 26198847--26198899 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 20
26198837 CGTTTTTTGC
26198847 TCATATTATTTTTGCTCACATTA
1 TCATATTATTTTT--TC-CATTA
26198870 TCATATTTATTTTTTCCATTA
1 TCATA-TTATTTTTTCCATTA
26198891 TGCATATTA
1 T-CATATTA
26198900 ACACCACACT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 9 0.32
22 6 0.21
23 5 0.18
24 8 0.29
ACGTcount: A:0.26, C:0.15, G:0.04, T:0.55
Consensus pattern (20 bp):
TCATATTATTTTTTCCATTA
Found at i:26199207 original size:112 final size:111
Alignment explanation
Indices: 26198920--26199358 Score: 616
Period size: 112 Copynumber: 4.0 Consensus size: 111
26198910 TCAAAAAAAG
* * * * * *
26198920 AAAATTTTTCTAAATGAGGCAATATTTAGCATTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAAATTTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
** *
26198985 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT-
66 GGGTGTCGATTTTTCTTATTCAACCAAATGGCTAAATATCCTTTTA
* * *
26199030 AAAAATTTTTAAAACAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
1 AAAAATTTTCAAAATAAGGCAATGTTTTGCATTT-GGAAATTCGAGAAAACATGCCCTAAGGTGC
*
26199095 TGGGTGTCGATTTTTCTTATTCAACCAAATGGCTAAATATCATTTTA
65 TGGGTGTCGATTTTTCTTATTCAACCAAATGGCTAAATATCCTTTTA
*
26199142 AAAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
1 AAAAATTTTCAAAATAAGGCAATGTTTTGCATTT-GGAAATTCGAGAAAACATGCCCTAAGGTGC
26199207 TGGGTGTCGATTTTTCTTATTCAACCAAATGGCTAAATATCCTTTTA
65 TGGGTGTCGATTTTTCTTATTCAACCAAATGGCTAAATATCCTTTTA
* * * *
26199254 AAAAATTTTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTTGAG-GAACGTACCCTAAGGTGC
1 AAAAA-TTTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGC
* * * * *
26199318 TGGGTTTCGATTTCTCGT-TT-AACCAAATTGCCAAATATCCT
65 TGGGTGTCGATTTTTCTTATTCAACCAAATGGCTAAATATCCT
26199359 CTCGAATTTC
Statistics
Matches: 300, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
109 19 0.06
110 28 0.09
111 101 0.34
112 124 0.41
113 28 0.09
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (111 bp):
AAAAATTTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
GGGTGTCGATTTTTCTTATTCAACCAAATGGCTAAATATCCTTTTA
Done.