Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 79 of 131
Found at i:26484911 original size:20 final size:21
Alignment explanation
Indices: 26484874--26484934 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
26484864 ATAATAAATC
* *
26484874 AAAATAAAATTTAGAAAT-TA
1 AAAATAAAATTAAAAAATATA
*
26484894 AAAATAAAATTAAAAAATATT
1 AAAATAAAATTAAAAAATATA
* *
26484915 GAAATAAAAATAAAAAATAT
1 AAAATAAAATTAAAAAATAT
26484935 TAAATTAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 16 0.46
21 19 0.54
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.26
Consensus pattern (21 bp):
AAAATAAAATTAAAAAATATA
Found at i:26484921 original size:21 final size:20
Alignment explanation
Indices: 26484895--26484939 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
26484885 TAGAAATTAA
*
26484895 AAATAAAATTAAAAAATATT
1 AAATAAAAATAAAAAATATT
26484915 GAAATAAAAATAAAAAATATT
1 -AAATAAAAATAAAAAATATT
26484936 AAAT
1 AAAT
26484940 TAATAGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (20 bp):
AAATAAAAATAAAAAATATT
Found at i:26487439 original size:49 final size:45
Alignment explanation
Indices: 26487386--26487481 Score: 111
Period size: 45 Copynumber: 2.0 Consensus size: 45
26487376 AAATTTGAAG
*
26487386 AAGAGAAGAAGAAGAAGAAGAGACCGGGAAGGGGAAAAAGAAAGAAAAA
1 AAGAGAAGAAG-AGAAG-AGAGA--GGGAAGGAGAAAAAGAAAGAAAAA
* * * *
26487435 AAGAGAAGTAGAGTAGAGAGAGGGAAGGAGAAAGAGAAGGAAAAA
1 AAGAGAAGAAGAGAAGAGAGAGGGAAGGAGAAAAAGAAAGAAAAA
26487480 AA
1 AA
26487482 ATAAATAGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
45 23 0.55
47 5 0.12
48 4 0.10
49 10 0.24
ACGTcount: A:0.59, C:0.02, G:0.36, T:0.02
Consensus pattern (45 bp):
AAGAGAAGAAGAGAAGAGAGAGGGAAGGAGAAAAAGAAAGAAAAA
Found at i:26487504 original size:13 final size:13
Alignment explanation
Indices: 26487488--26487517 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
26487478 AAAAATAAAT
26487488 AGAAAAGGGAAGG
1 AGAAAAGGGAAGG
26487501 AG-AAAGGGAAGG
1 AGAAAAGGGAAGG
26487513 AGAAA
1 AGAAA
26487518 TTTGTGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (13 bp):
AGAAAAGGGAAGG
Found at i:26488181 original size:15 final size:17
Alignment explanation
Indices: 26488155--26488198 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
26488145 TGTTATTATA
26488155 TATTAT-ATTTTAAACT
1 TATTATCATTTTAAACT
26488171 TA-TA-CATTTT--ACT
1 TATTATCATTTTAAACT
26488184 TATTATCATTTTAAA
1 TATTATCATTTTAAA
26488199 ATAATAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 9
0.72 0.00 0.28
Matches are distributed among these distances:
13 5 0.22
14 2 0.09
15 13 0.57
16 2 0.09
17 1 0.04
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTATCATTTTAAACT
Found at i:26490645 original size:41 final size:40
Alignment explanation
Indices: 26490513--26490680 Score: 300
Period size: 40 Copynumber: 4.2 Consensus size: 40
26490503 NNNNNNNNNN
*
26490513 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCT
1 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCC
26490553 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCC
1 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCC
26490593 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTTAGCC
1 TGCTAGGTTTATAACCTGATTCAGATCACCGGCAC-TAGCC
26490634 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTTAGCC
1 TGCTAGGTTTATAACCTGATTCAGATCACCGGCAC-TAGCC
*
26490675 TACTAG
1 TGCTAG
26490681 ACATAAAGTC
Statistics
Matches: 125, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
40 74 0.59
41 51 0.41
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (40 bp):
TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCC
Found at i:26490669 original size:81 final size:81
Alignment explanation
Indices: 26490513--26490680 Score: 302
Period size: 81 Copynumber: 2.1 Consensus size: 81
26490503 NNNNNNNNNN
*
26490513 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCTTGCTAGGTTTATAACCTGATTCAGA
1 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCCTGCTAGGTTTATAACCTGATTCAGA
26490578 TCACCGGCAC-TAGCC
66 TCACCGGCACTTAGCC
26490593 TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAG
1 TGCTAGGTTTATAACCTGATTCAGATCACCGGCAC-TAGCCTGCTAGGTTTATAACCTGATTCAG
26490658 ATCACCGGCACTTAGCC
65 ATCACCGGCACTTAGCC
*
26490675 TACTAG
1 TGCTAG
26490681 ACATAAAGTC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
80 35 0.42
81 39 0.46
82 10 0.12
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (81 bp):
TGCTAGGTTTATAACCTGATTCAGATCACCGGCACTAGCCTGCTAGGTTTATAACCTGATTCAGA
TCACCGGCACTTAGCC
Found at i:26493685 original size:49 final size:48
Alignment explanation
Indices: 26493632--26493879 Score: 304
Period size: 48 Copynumber: 5.1 Consensus size: 48
26493622 GTATTTATTT
* **
26493632 AATTAGATTAATTGTAACATTAAAACTTGGAACAAACTTTGTGGTCATA
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAAT-ATA
* * *
26493681 AATTAGATTAATTGCAACATTAAAACTTGGAACAAATTTTATGATCATA
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAAT-ATA
*
26493730 AATTAGATTAATTGCAACATTAAAACTTGGAGCAAACTTTGTAATATA
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAATATA
* * * *
26493778 AATTA-AATACAGTACAACATTAAAACTTGGAACAAAATTTGTAATATA
1 AATTAGATTA-ATTGCAACATTAAAACTTGGAACAAACTTTGTAATATA
* * *
26493826 AATTA-AATATATTACAACATTAAAACTT-GATACAAACTTAGTAATATA
1 AATTAGATTA-ATTGCAACATTAAAACTTGGA-ACAAACTTTGTAATATA
26493874 AATTAG
1 AATTAG
26493880 GTACATTGGA
Statistics
Matches: 179, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
47 5 0.03
48 88 0.49
49 86 0.48
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (48 bp):
AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAATATA
Found at i:26497302 original size:4 final size:4
Alignment explanation
Indices: 26497293--26497332 Score: 62
Period size: 4 Copynumber: 9.5 Consensus size: 4
26497283 AAAAATACAT
26497293 TTTC TTTC TTTC TTTC TTCTC TTTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC TTTC TTTC TT
26497333 CACTCCCTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 28 0.82
5 4 0.12
6 2 0.06
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:26497320 original size:18 final size:17
Alignment explanation
Indices: 26497293--26497332 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
26497283 AAAAATACAT
26497293 TTTC-TTTCTTTCTTTC
1 TTTCTTTTCTTTCTTTC
26497309 TTCTCTTTTCTTTCTTTC
1 TT-TCTTTTCTTTCTTTC
26497327 TTTCTT
1 TTTCTT
26497333 CACTCCCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 6 0.27
18 14 0.64
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTCTTTTCTTTCTTTC
Found at i:26497320 original size:22 final size:22
Alignment explanation
Indices: 26497292--26497333 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
26497282 TAAAAATACA
26497292 TTTTCTTTCTTTCTTTCTTCTC
1 TTTTCTTTCTTTCTTTCTTCTC
26497314 TTTTCTTTCTTTCTTTCTTC
1 TTTTCTTTCTTTCTTTCTTC
26497334 ACTCCCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTCTTTCTTTCTTTCTTCTC
Found at i:26497346 original size:22 final size:22
Alignment explanation
Indices: 26497295--26497343 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
26497285 AAATACATTT
* **
26497295 TCTTTCTTTCTTTCTTCTCTTT
1 TCTTTCTTTCTTTCTTCACTCC
26497317 TCTTTCTTTCTTTCTTCACTCCC
1 TCTTTCTTTCTTTCTTCACT-CC
26497340 TCTT
1 TCTT
26497344 CTTCCTCATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (22 bp):
TCTTTCTTTCTTTCTTCACTCC
Found at i:26516787 original size:14 final size:14
Alignment explanation
Indices: 26516768--26516803 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
26516758 CTGTTTGTGG
26516768 GAAATTTCAGGGAC
1 GAAATTTCAGGGAC
26516782 GAAATTTCAGGGAC
1 GAAATTTCAGGGAC
26516796 GAAATTTC
1 GAAATTTC
26516804 TTTCAGGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (14 bp):
GAAATTTCAGGGAC
Found at i:26526748 original size:18 final size:19
Alignment explanation
Indices: 26526722--26526758 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26526712 AATATTTGAA
26526722 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
26526740 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
26526759 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:26527181 original size:22 final size:22
Alignment explanation
Indices: 26527139--26527183 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
26527129 TTATTAACCC
*
26527139 AAATTAAATTGTATATAAATTA
1 AAATTAAATTATATATAAATTA
*
26527161 AAATT-AATTATATTATGAATTA
1 AAATTAAATTATA-TATAAATTA
26527183 A
1 A
26527184 CACATAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
AAATTAAATTATATATAAATTA
Found at i:26528530 original size:51 final size:51
Alignment explanation
Indices: 26528432--26528530 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
26528422 CATTTTTCAT
* *
26528432 TTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTCCATTTCTCCAA
1 TTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCAATTCTCCAA
** * * * *
26528483 TTTCATTTTGGAGAAAATTATAATCATTTCCCAATGTTTTCAATTCTC
1 TTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCAATTCTC
26528531 TGTTTTCACT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.41
Consensus pattern (51 bp):
TTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCAATTCTCCAA
Found at i:26532115 original size:18 final size:18
Alignment explanation
Indices: 26532092--26532127 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26532082 ATTTTCTGTA
26532092 AAATTATATTAGAATGAG
1 AAATTATATTAGAATGAG
26532110 AAATTATATTAGAATGAG
1 AAATTATATTAGAATGAG
26532128 CCTGCTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (18 bp):
AAATTATATTAGAATGAG
Found at i:26532971 original size:32 final size:32
Alignment explanation
Indices: 26532935--26533001 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
26532925 GGCCGTGTAA
* * * **
26532935 GCCACACGGGCTAGGCTAATTTGGGCGTGTGG
1 GCCACACAGGCAAGGCCAATTTCAGCGTGTGG
26532967 GCCACACAGGCAAGGCCAATTTCAGCGTGTGG
1 GCCACACAGGCAAGGCCAATTTCAGCGTGTGG
26532999 GCC
1 GCC
26533002 CATACGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.19, C:0.27, G:0.36, T:0.18
Consensus pattern (32 bp):
GCCACACAGGCAAGGCCAATTTCAGCGTGTGG
Found at i:26544373 original size:24 final size:24
Alignment explanation
Indices: 26544344--26544412 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
26544334 AATGGGTTAC
26544344 AAGAAGATGAAA-GATG-AAGAGTT-
1 AAGAAGATGAAATG-TGAAAG-GTTG
26544367 AAGGAAGATGAAATGTGAAAGGTTG
1 AA-GAAGATGAAATGTGAAAGGTTG
26544392 AAGAAGATGAAAAT-TGAAAGG
1 AAGAAGATG-AAATGTGAAAGG
26544413 CTGATTATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
23 2 0.05
24 29 0.71
25 10 0.24
ACGTcount: A:0.51, C:0.00, G:0.32, T:0.17
Consensus pattern (24 bp):
AAGAAGATGAAATGTGAAAGGTTG
Found at i:26549047 original size:18 final size:18
Alignment explanation
Indices: 26549021--26549055 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26549011 CTTGTTGGAT
*
26549021 TTTCTTTTTGGATTTTTC
1 TTTCATTTTGGATTTTTC
*
26549039 TTTCATTTTGTATTTTT
1 TTTCATTTTGGATTTTT
26549056 AAGCTAGCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.74
Consensus pattern (18 bp):
TTTCATTTTGGATTTTTC
Found at i:26551350 original size:23 final size:23
Alignment explanation
Indices: 26551298--26551428 Score: 79
Period size: 23 Copynumber: 5.7 Consensus size: 23
26551288 CTTGCAACGA
* * *
26551298 CTTTGTGGCGTCTTTTGTAATGT
1 CTTTGTGGCATATTCTGTAATGT
* *
26551321 ATGTGTGGCATATTCTGTAATGT
1 CTTTGTGGCATATTCTGTAATGT
* * ** * *
26551344 CTTTGTGTCCTACACTGCAATGC
1 CTTTGTGGCATATTCTGTAATGT
* *
26551367 CTTTATGGCATATTCTGTAAT-A
1 CTTTGTGGCATATTCTGTAATGT
**
26551389 CGTTTGTGG-AGTATTCTACAATG-
1 C-TTTGTGGCA-TATTCTGTAATGT
26551412 CTTTTGTGGCATATTCT
1 C-TTTGTGGCATATTCT
26551429 ACAATGCATT
Statistics
Matches: 80, Mismatches: 24, Indels: 8
0.71 0.21 0.07
Matches are distributed among these distances:
22 2 0.03
23 77 0.96
24 1 0.01
ACGTcount: A:0.18, C:0.16, G:0.21, T:0.44
Consensus pattern (23 bp):
CTTTGTGGCATATTCTGTAATGT
Found at i:26551429 original size:23 final size:23
Alignment explanation
Indices: 26551361--26551443 Score: 87
Period size: 23 Copynumber: 3.6 Consensus size: 23
26551351 TCCTACACTG
* * *
26551361 CAATGCCTTTATGGCATATTCTG
1 CAATGCATTTGTGGCATATTCTA
* * *
26551384 TAATACGTTTGTGG-AGTATTCTA
1 CAATGCATTTGTGGCA-TATTCTA
*
26551407 CAATGCTTTTGTGGCATATTCTA
1 CAATGCATTTGTGGCATATTCTA
26551430 CAATGCATTTGTGG
1 CAATGCATTTGTGG
26551444 TAAGTTCCGT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
22 1 0.02
23 47 0.96
24 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (23 bp):
CAATGCATTTGTGGCATATTCTA
Found at i:26558218 original size:24 final size:24
Alignment explanation
Indices: 26558180--26558431 Score: 143
Period size: 24 Copynumber: 10.8 Consensus size: 24
26558170 TGAATTGGAT
* *
26558180 AATTTACAATAAATAATATATAATA
1 AATTTAAAAT-AATAATATATGATA
* *
26558205 AATTTGAAATAATAATACAT-ATAA
1 AATTTAAAATAATAATATATGAT-A
*
26558229 AATTT-AAA-AAT--TTTGATGAT-
1 AATTTAAAATAATAATAT-ATGATA
* * **
26558249 AATTCTAGAATAATCATACGTGATA
1 AATT-TAAAATAATAATATATGATA
** * *
26558274 AATCCAAAATAATAGTATATAATA
1 AATTTAAAATAATAATATATGATA
*
26558298 AATTT-AAA-AATATTA-ATGATA
1 AATTTAAAATAATAATATATGATA
* * *
26558319 ATTTTGAAATAA-ATATACATGATA
1 AATTTAAAATAATA-ATATATGATA
** * *
26558343 AATTTAAAATAATGTTA-ACGATG
1 AATTTAAAATAATAATATATGATA
26558366 AATTTAAAATAATAATAT-TGATA
1 AATTTAAAATAATAATATATGATA
* *
26558389 AA-TTACAAATAATAAAACATGATA
1 AATTTA-AAATAATAATATATGATA
*
26558413 AATCTAAAATAATAATATA
1 AATTTAAAATAATAATATA
26558432 CAATAAACTT
Statistics
Matches: 171, Mismatches: 38, Indels: 37
0.70 0.15 0.15
Matches are distributed among these distances:
20 5 0.03
21 12 0.07
22 20 0.12
23 49 0.29
24 71 0.42
25 14 0.08
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.35
Consensus pattern (24 bp):
AATTTAAAATAATAATATATGATA
Found at i:26558252 original size:69 final size:67
Alignment explanation
Indices: 26558177--26558465 Score: 190
Period size: 69 Copynumber: 4.1 Consensus size: 67
26558167 AAATGAATTG
* * * *
26558177 GATAATTTACAATAAATAATATATAATAAATTTGAAATAATAATACAT-ATAAAATTTAAAAATT
1 GATAATTTA-AATAAAT-ATACATGATAAATTTAAAATAATAATACATAAT-AAATTTAAAAATA
*
26558241 TTGAT
63 TTAAT
* ** * *
26558246 GATAATTCTAGAAT-AATCATACGTGATAAATCCAAAATAATAGTATATAATAAATTTAAAAATA
1 GATAATT-TA-AATAAAT-ATACATGATAAATTTAAAATAATAATACATAATAAATTTAAAAATA
26558310 TTAAT
63 TTAAT
** ** *
26558315 GATAATTTTGAAATAAATATACATGATAAATTTAAAATAATGTTA-ACGATGAATTTAAAATAAT
1 GATAA-TTT-AAATAAATATACATGATAAATTTAAAATAATAATACATAATAAATTT-AAA-AAT
* *
26558379 AATATT
62 ATTAAT
* * * * * * *
26558385 GATAAATTACAA-ATAATAAAACATGATAAATCTAAAATAATAATATACAATAAACTTAGATAAT
1 GATAATTTA-AATA-AAT-ATACATGATAAATTTAAAATAATAATACATAATAAATTTA-AAAAT
*
26558449 ATTAAC
62 ATTAAT
26558455 GATTAATTTAA
1 GA-TAATTTAA
26558466 TGATAATAAG
Statistics
Matches: 172, Mismatches: 35, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
68 10 0.06
69 89 0.52
70 58 0.34
71 15 0.09
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (67 bp):
GATAATTTAAATAAATATACATGATAAATTTAAAATAATAATACATAATAAATTTAAAAATATTA
AT
Found at i:26558437 original size:24 final size:24
Alignment explanation
Indices: 26558279--26558438 Score: 79
Period size: 23 Copynumber: 6.9 Consensus size: 24
26558269 TGATAAATCC
* *
26558279 AAAATAATAGTATATAATAAATTT
1 AAAATAATAATATACAATAAATTT
* ** *
26558303 -AAA-AATATTA-ATGATAATTTT
1 AAAATAATAATATACAATAAATTT
*
26558324 GAAAT-A-AATATACATGATAAATTT
1 AAAATAATAATATACA--ATAAATTT
** * *
26558348 AAAATAATGTTA-ACGATGAATTT
1 AAAATAATAATATACAATAAATTT
**
26558371 AAAATAATAATAT-TGATAAA-TT
1 AAAATAATAATATACAATAAATTT
*
26558393 ACAAATAATAA-A-ACATGATAAATCT
1 A-AAATAATAATATACA--ATAAATTT
26558418 AAAATAATAATATACAATAAA
1 AAAATAATAATATACAATAAA
26558439 CTTAGATAAT
Statistics
Matches: 102, Mismatches: 19, Indels: 30
0.68 0.13 0.20
Matches are distributed among these distances:
21 12 0.12
22 15 0.15
23 34 0.33
24 30 0.29
25 6 0.06
26 5 0.05
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
AAAATAATAATATACAATAAATTT
Found at i:26558448 original size:70 final size:69
Alignment explanation
Indices: 26558269--26558449 Score: 168
Period size: 70 Copynumber: 2.6 Consensus size: 69
26558259 TAATCATACG
* * * * * * **
26558269 TGATAAATCCAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAATTTTGAAATAAATA
1 TGATAAATCTAAAATAATAATATACAATAAATTTAATAATAATAATGATAAATTACAAATAAATA
*
26558334 TACA
66 AACA
* ** * * *
26558338 TGATAAATTTAAAATAATGTTA-ACGATGAATTTAAAATAATAATATTGATAAATTACAAAT-AA
1 TGATAAATCTAAAATAATAATATACAATAAATTT--AATAATAATAATGATAAATTACAAATAAA
26558401 TAAAACA
64 T-AAACA
*
26558408 TGATAAATCTAAAATAATAATATACAATAAACTTAGATAATA
1 TGATAAATCTAAAATAATAATATACAATAAATTTA-ATAATA
26558450 TTAACGATTA
Statistics
Matches: 87, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
68 8 0.09
69 22 0.25
70 49 0.56
71 8 0.09
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (69 bp):
TGATAAATCTAAAATAATAATATACAATAAATTTAATAATAATAATGATAAATTACAAATAAATA
AACA
Found at i:26559262 original size:19 final size:19
Alignment explanation
Indices: 26559235--26559279 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
26559225 TCTTTTTTCC
*
26559235 TCCCTTTACATTGATTTTT
1 TCCCTTTACACTGATTTTT
*
26559254 TCTCTTTACACTGATTTTT
1 TCCCTTTACACTGATTTTT
26559273 TCCCTTT
1 TCCCTTT
26559280 TTTATGAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.13, C:0.24, G:0.04, T:0.58
Consensus pattern (19 bp):
TCCCTTTACACTGATTTTT
Found at i:26562438 original size:21 final size:21
Alignment explanation
Indices: 26562414--26562454 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
26562404 GTTCCAATCC
*
26562414 TTTTCTTACCCGTTTCATTTA
1 TTTTCTTACCCGTCTCATTTA
26562435 TTTTCTTACCCGTCTCATTT
1 TTTTCTTACCCGTCTCATTT
26562455 GGATAGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.05, T:0.56
Consensus pattern (21 bp):
TTTTCTTACCCGTCTCATTTA
Found at i:26565966 original size:31 final size:30
Alignment explanation
Indices: 26565922--26565980 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
26565912 ATAAGAATAT
*
26565922 GAAAGATAAAGAATTAAGAAAAATGAAAGA
1 GAAAGATAAAGAATGAAGAAAAATGAAAGA
* *
26565952 GAAAGAATTAAGAATGATGAAAAATGAAA
1 GAAAG-ATAAAGAATGAAGAAAAATGAAA
26565981 AGTTGATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.15
Consensus pattern (30 bp):
GAAAGATAAAGAATGAAGAAAAATGAAAGA
Found at i:26565971 original size:24 final size:23
Alignment explanation
Indices: 26565913--26565973 Score: 86
Period size: 24 Copynumber: 2.6 Consensus size: 23
26565903 AAAAGAGTTA
*
26565913 TAAGAATATGAAAGATAAAGAAT
1 TAAGAATATGAAAGAGAAAGAAT
*
26565936 TAAGAAAAATGAAAGAGAAAGAAT
1 TAAG-AATATGAAAGAGAAAGAAT
26565960 TAAGAATGATGAAA
1 TAAGAAT-ATGAAA
26565974 AATGAAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 6 0.18
24 27 0.82
ACGTcount: A:0.62, C:0.00, G:0.20, T:0.18
Consensus pattern (23 bp):
TAAGAATATGAAAGAGAAAGAAT
Found at i:26567481 original size:35 final size:35
Alignment explanation
Indices: 26567442--26567562 Score: 115
Period size: 35 Copynumber: 3.4 Consensus size: 35
26567432 TTTAATTAAA
26567442 TTTATTAAATGAATTTAGATTTTGTCAATAAAAAC
1 TTTATTAAATGAATTTAGATTTTGTCAATAAAAAC
* * ** *
26567477 TTTATTGAATGAA-TTA-ATATCATAATACGTAAAAAC
1 TTTATTAAATGAATTTAGATTTTGTCA-A--TAAAAAC
*
26567513 -TTA-TAAATTAGAATTTAGATTTTGTCAAAAAAAAC
1 TTTATTAAA-T-GAATTTAGATTTTGTCAATAAAAAC
26567548 TTTATTAAATGAATT
1 TTTATTAAATGAATT
26567563 AATATCATAA
Statistics
Matches: 66, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
33 5 0.08
34 7 0.11
35 27 0.41
36 14 0.21
37 8 0.12
38 5 0.08
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.40
Consensus pattern (35 bp):
TTTATTAAATGAATTTAGATTTTGTCAATAAAAAC
Found at i:26577990 original size:35 final size:35
Alignment explanation
Indices: 26577951--26578022 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
26577941 ATTGTGAAAA
*
26577951 TATTGGCGTTGTGGC-GAGACGTTAAATGAATGAAG
1 TATTGGCGTTGTGGCAG-GACGTTAAATGAATAAAG
* *
26577986 TATTGGTGTTGTGGCAGGACGTTACATGAATAAAG
1 TATTGGCGTTGTGGCAGGACGTTAAATGAATAAAG
26578021 TA
1 TA
26578023 ACGATGTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 32 0.97
36 1 0.03
ACGTcount: A:0.29, C:0.08, G:0.32, T:0.31
Consensus pattern (35 bp):
TATTGGCGTTGTGGCAGGACGTTAAATGAATAAAG
Found at i:26578031 original size:35 final size:35
Alignment explanation
Indices: 26577958--26578033 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
26577948 AAATATTGGC
* ** *
26577958 GTTGTGGCGAGACGTTAAATGAATGAAGTATTGGT
1 GTTGTGGCGAGACGTTAAATGAATAAAGTAACGAT
*
26577993 GTTGTGGC-AGGACGTTACATGAATAAAGTAACGAT
1 GTTGTGGCGA-GACGTTAAATGAATAAAGTAACGAT
26578028 GTTGTG
1 GTTGTG
26578034 AGGGAATGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.30
Consensus pattern (35 bp):
GTTGTGGCGAGACGTTAAATGAATAAAGTAACGAT
Found at i:26578064 original size:69 final size:69
Alignment explanation
Indices: 26577982--26578118 Score: 170
Period size: 69 Copynumber: 2.0 Consensus size: 69
26577972 TTAAATGAAT
** *
26577982 GAAGTATTGGTGTTGTGGCAGGACGTTACATGAATA-AAGTAACGATGTTGTGAG-GGAATGTTA
1 GAAGTATCAGTGTTGTGGCAGGACGTTA-ATGAAGAGAAGTAACGATGTTGTG-GTGGAATGTTA
26578045 ATTAAC
64 ATTAAC
* * * * *
26578051 GAAGTATCAGTGTTGTGGTAGGATGTTAATTAAGAGAAGTATCGGTGTTGTGGTGGAATGTTAAT
1 GAAGTATCAGTGTTGTGGCAGGACGTTAATGAAGAGAAGTAACGATGTTGTGGTGGAATGTTAAT
26578116 TAA
66 TAA
26578119 AATTGGACTG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
68 6 0.10
69 52 0.90
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (69 bp):
GAAGTATCAGTGTTGTGGCAGGACGTTAATGAAGAGAAGTAACGATGTTGTGGTGGAATGTTAAT
TAAC
Found at i:26578099 original size:35 final size:35
Alignment explanation
Indices: 26578036--26578119 Score: 127
Period size: 35 Copynumber: 2.4 Consensus size: 35
26578026 ATGTTGTGAG
* *
26578036 GGAATGTTAATTAACGAAGTATCAGTGTTGTGGTA
1 GGAATGTTAATTAAAGAAGTATCGGTGTTGTGGTA
26578071 GG-ATGTTAATTAAGAGAAGTATCGGTGTTGTGGT-
1 GGAATGTTAATTAA-AGAAGTATCGGTGTTGTGGTA
26578105 GGAATGTTAATTAAA
1 GGAATGTTAATTAAA
26578120 ATTGGACTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
34 14 0.31
35 31 0.69
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.35
Consensus pattern (35 bp):
GGAATGTTAATTAAAGAAGTATCGGTGTTGTGGTA
Found at i:26593534 original size:17 final size:17
Alignment explanation
Indices: 26593512--26593564 Score: 81
Period size: 17 Copynumber: 3.2 Consensus size: 17
26593502 ATAGAAAGTC
26593512 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
*
26593529 AAAGATATGGGTATCAA
1 AAAGATATGGGTATCAG
*
26593546 AAAGATATGGCTATC-G
1 AAAGATATGGGTATCAG
26593562 AAA
1 AAA
26593565 TCTGGGATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
16 3 0.09
17 30 0.91
ACGTcount: A:0.45, C:0.08, G:0.25, T:0.23
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:26602953 original size:17 final size:17
Alignment explanation
Indices: 26602931--26602963 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26602921 TAGTTGTCAC
26602931 TTGAATTAAATTAATTG
1 TTGAATTAAATTAATTG
*
26602948 TTGAATTAATTTAATT
1 TTGAATTAAATTAATT
26602964 TGATAGTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (17 bp):
TTGAATTAAATTAATTG
Found at i:26603269 original size:137 final size:137
Alignment explanation
Indices: 26603023--26603304 Score: 564
Period size: 137 Copynumber: 2.1 Consensus size: 137
26603013 GAGAACATAG
26603023 ATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTTGCCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTTGCCAAATTTATT
26603088 AATATAAATATTTATATTAATTAATTTCGGTCAAAATATAAAAACATGAAAATTAATATTCTTTT
66 AATATAAATATTTATATTAATTAATTTCGGTCAAAATATAAAAACATGAAAATTAATATTCTTTT
26603153 GGAAAGA
131 GGAAAGA
26603160 ATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTTGCCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTTGCCAAATTTATT
26603225 AATATAAATATTTATATTAATTAATTTCGGTCAAAATATAAAAACATGAAAATTAATATTCTTTT
66 AATATAAATATTTATATTAATTAATTTCGGTCAAAATATAAAAACATGAAAATTAATATTCTTTT
26603290 GGAAAGA
131 GGAAAGA
26603297 ATATAATT
1 ATATAATT
26603305 CATTTTTCTA
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.42
Consensus pattern (137 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTTGCCAAATTTATT
AATATAAATATTTATATTAATTAATTTCGGTCAAAATATAAAAACATGAAAATTAATATTCTTTT
GGAAAGA
Found at i:26603718 original size:4 final size:4
Alignment explanation
Indices: 26603709--26603870 Score: 292
Period size: 4 Copynumber: 41.0 Consensus size: 4
26603699 TAACAAGACA
26603709 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT -TAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
26603756 GTAT GTA- GTAT GTAT GTGT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
26603803 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAC GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
26603851 GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT
26603871 ATATTAAGAA
Statistics
Matches: 152, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
3 6 0.04
4 146 0.96
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:26613641 original size:17 final size:19
Alignment explanation
Indices: 26613601--26613642 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
26613591 TTGATCTAAC
26613601 ATACAATGTTATATAAATT
1 ATACAATGTTATATAAATT
*
26613620 TTACAAT-TTATAT-AATT
1 ATACAATGTTATATAAATT
26613637 ATACAA
1 ATACAA
26613643 ATACAACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 6 0.29
19 6 0.29
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (19 bp):
ATACAATGTTATATAAATT
Found at i:26614983 original size:73 final size:74
Alignment explanation
Indices: 26614899--26615047 Score: 291
Period size: 73 Copynumber: 2.0 Consensus size: 74
26614889 TCTTGAAGTT
26614899 TTTAAAGAGCTTTAATTAGGCTTCCTCAATTTTTTAAAAATTTTCATTATATTTTTTAA-TTTTT
1 TTTAAAGAGCTTTAATTAGGCTTCCTCAATTTTTTAAAAATTTTCATTATATTTTTTAATTTTTT
26614963 AAATTCTAA
66 AAATTCTAA
26614972 TTTAAAGAGCTTTAATTAGGCTTCCTCAATTTTTTAAAAATTTTCATTATATTTTTTAATTTTTT
1 TTTAAAGAGCTTTAATTAGGCTTCCTCAATTTTTTAAAAATTTTCATTATATTTTTTAATTTTTT
26615037 AAATTCTAA
66 AAATTCTAA
26615046 TT
1 TT
26615048 AAGTTCTCTT
Statistics
Matches: 75, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 59 0.79
74 16 0.21
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.53
Consensus pattern (74 bp):
TTTAAAGAGCTTTAATTAGGCTTCCTCAATTTTTTAAAAATTTTCATTATATTTTTTAATTTTTT
AAATTCTAA
Found at i:26616482 original size:25 final size:26
Alignment explanation
Indices: 26616446--26616498 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
26616436 TAATGTCCCT
*
26616446 TTTCTTTCTCATGTTTTTTCTTT-GC
1 TTTCTTTCTCATGTTTTTCCTTTAGC
*
26616471 TTTCTTTTTCATGTTTTTCCTTTAGC
1 TTTCTTTCTCATGTTTTTCCTTTAGC
26616497 TT
1 TT
26616499 CCTAGACTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.06, C:0.19, G:0.08, T:0.68
Consensus pattern (26 bp):
TTTCTTTCTCATGTTTTTCCTTTAGC
Found at i:26617291 original size:42 final size:41
Alignment explanation
Indices: 26617114--26617455 Score: 447
Period size: 41 Copynumber: 8.4 Consensus size: 41
26617104 ATTCGGTGGC
* * * *
26617114 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
26617155 TTTAGCAGCGTTTTTT--AAAGCGCCACTAATGCTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * * * *
26617194 TTTAGCAGCGTGTTTTAAAAAGCACCACTAATGGTCTTGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
26617235 TTTAGCGGCGTTTTTTTAAAAGCACCGCTAATGGTCTGAGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* *
26617276 TTTAGCGGCGTTTTTTTAAAAAGCGTCGCTAATGGTCTGAGT
1 TTTAGCGGCG-TTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
26617318 TTTAGCGGCGTTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
1 TTTAGCGGCG-TTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
26617360 TTTACCGGCGTCTTTTAAAAAGCGCCGCTAATGGTCTTGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* *
26617401 TTTAGCTGCATTTTTT-AAAAGCGCCGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
26617441 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
26617456 GTTAAAGTGC
Statistics
Matches: 267, Mismatches: 31, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
39 36 0.13
40 36 0.13
41 118 0.44
42 77 0.29
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.36
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
Found at i:26617461 original size:83 final size:82
Alignment explanation
Indices: 26617114--26617455 Score: 458
Period size: 83 Copynumber: 4.2 Consensus size: 82
26617104 ATTCGGTGGC
* * * * * *
26617114 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGGTCTGGGTTTTAGCAGCG-TTTTTT-AAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCG
* *
26617177 CCACTAATGCTCTGGGT
66 CCGCTAATGGTCTGGGT
* * * * *
26617194 TTTAGCAGCGTGTTTTAAAAAGCACCACTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCA
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCG
*
26617259 CCGCTAATGGTCTGAGT
66 CCGCTAATGGTCTGGGT
*
26617276 TTTAGCGGCGTTTTTTTAAAAAGCGTCGCTAATGGTC-TGAGTTTTAGCGGCGTTTTTTTAAAAA
1 TTTAGCGGCG-TTTTTTAAAAAGCGCCGCTAATGGTCTTG-GTTTTAGCGGCGTTTTTTT-AAAA
26617340 GCGCCGCTAATGGTCTGGGT
63 GCGCCGCTAATGGTCTGGGT
* * * *
26617360 TTTACCGGCGTCTTTTAAAAAGCGCCGCTAATGGTCTTGGTTTTAGCTGC-ATTTTTTAAAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCG
26617424 CCGCTAATGGTCTGGGT
66 CCGCTAATGGTCTGGGT
26617441 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
26617456 GTTAAAGTGC
Statistics
Matches: 228, Mismatches: 28, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
80 41 0.18
81 43 0.19
82 36 0.16
83 75 0.33
84 33 0.14
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.36
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCG
CCGCTAATGGTCTGGGT
Found at i:26617931 original size:22 final size:22
Alignment explanation
Indices: 26617896--26617950 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
26617886 GTTTAATTAA
* * *
26617896 GGGTT-GGGATTTAATGTTTAG
1 GGGTTAGGGGTTTAAGGGTTAG
26617917 GGGTTAGGGGTTTAAGGGTTAG
1 GGGTTAGGGGTTTAAGGGTTAG
**
26617939 ACGTTAGGGGTT
1 GGGTTAGGGGTT
26617951 AATAGTTAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.18, C:0.02, G:0.44, T:0.36
Consensus pattern (22 bp):
GGGTTAGGGGTTTAAGGGTTAG
Found at i:26618272 original size:14 final size:14
Alignment explanation
Indices: 26618238--26618286 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
26618228 GATTTGAGGT
* *
26618238 TTAGGTGTTAGGAG
1 TTAGGGGTTAAGAG
26618252 TTTAGGGGTT-AGACG
1 -TTAGGGGTTAAGA-G
26618267 TTAGGGGTTAAGAG
1 TTAGGGGTTAAGAG
26618281 TTAGGG
1 TTAGGG
26618287 ATTTGGGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.22, C:0.02, G:0.43, T:0.33
Consensus pattern (14 bp):
TTAGGGGTTAAGAG
Found at i:26618642 original size:322 final size:314
Alignment explanation
Indices: 26617800--26618706 Score: 1098
Period size: 320 Copynumber: 2.8 Consensus size: 314
26617790 ATTTTATTGA
* * * * *
26617800 AAGATTTAATGTCGATTTAAGAGTTCATA-TTTAAGGTTTTAGTGAG----TATATATGGATTAA
1 AAGATTTAAGGCCGATTTAGGAATTCATATTTTAAGG-TTTAGGGAGTATATATATATGGATTAA
* * *
26617860 TAAGGGATTATGGATTATGGATTATGGTTTAATTAAGGGTTGGGATTTAATGTTTAGGGGTTAGG
65 T-AGGGATTAT-GATTAGGGATTATGGTTTAATTAAGGGTTGGGATTTAAGGTTTAAGGGTTAGG
* * * *
26617925 GGTTTAAGGGTTAGACGTTAGGGGTTAATAGTTAGGGATTTAAGGTTTACGAATTT-AGGGGTCG
128 GGTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAGGGTTTA-GGATTTCAGGGGTCG
* * * *
26617989 AATTAGGGTTTTGAGATTAGATTAT-TTTTTTATTTATATTTTAAATATGTTATTATATAAGTAA
192 -GTTAGGGTTTTGGGTTTAGATTATATTTTTTATTTATATTTTAAAT-T-TT-TTAT-TATGTAA
* * * *
26618053 TTGTAATTTAACATAATAATAAAATTGTTTAGGGTTTTTAATTAGTTTAGGGTATATGATAAATT
252 TTGTAA---AAGATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATT
26618118 T
314 T
* * * * *
26618119 AAGATTTAAGGCCGGTTTAGGAGTTCATATTTTAAGGTTTAGGTAGTATATATGGATTTAG-TT-
1 AAGATTTAAGGCCGATTTAGGAATTCATATTTTAAGGTTTAGGGAGTATATAT--ATATGGATTA
*
26618182 ATAGGGATTATGCATTAGGGATTATGGTTTAATATTTAAGGGTTGGGATTTGAGGTTT-AGGTGT
64 ATAGGGATTATG-ATTAGGGATTATGGTTT-A-A-TTAAGGGTTGGGATTTAAGGTTTAAGG-GT
* * * *
26618246 TAGGAGTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTGGGGTTTACGAATTCAGGGG
124 TAGGGGTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAGGGTTTAGGATTTCAGGGG
* * *
26618311 TTGGGTTAGGGTTTTGGGTTTAGATTATTATTTTTTCTTTATATTTTAAATTTTTTATTATGTAG
189 -TCGGTTAGGGTTTTGGGTTTAGATTA-TATTTTTTATTTATATTTTAAATTTTTTATTATGTAA
26618376 TTGTAAAAGATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATTT
252 TTGTAAAAGATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATTT
26618439 AAGATTTAAGGCCGATTTAGGAATTCATATTTTAAGGTTTAGGGAGTACTATATATATGGATTAA
1 AAGATTTAAGGCCGATTTAGGAATTCATATTTTAAGGTTTAGGGAGTA-TATATATATGGATTAA
*
26618504 CTAGGGATTATAGATTAGGGATTATGGTTTAGTTAAGGGTTGGCTCGATTTAAGGTTTAAGGGTT
65 -TAGGGATTAT-GATTAGGGATTATGGTTTAATTAAGGGTTGG---GATTTAAGGTTTAAGGGTT
* * * * * *
26618569 AGGGGTTTAGGGGTTAAACGTTAGTGGTTAAGAGTTAAGGATTTAGGGTTTAGGGTTTCAAGAGT
125 AGGGGTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAGGGTTTAGGATTTCAGGGGT
* * *
26618634 CAGGTTAGGGTTTTGGGTTTAGA-TAAATTTTTTATTTATATTTTAAATATTTTCTTATGTAATT
190 C-GGTTAGGGTTTTGGGTTTAGATTATATTTTTTATTTATATTTTAAATTTTTTATTATGTAATT
26618698 GTAAAAGAT
254 GTAAAAGAT
26618707 GTATAATTTA
Statistics
Matches: 508, Mismatches: 54, Indels: 51
0.83 0.09 0.08
Matches are distributed among these distances:
319 47 0.09
320 150 0.30
321 11 0.02
322 141 0.28
323 21 0.04
324 12 0.02
325 102 0.20
326 4 0.01
327 20 0.04
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.42
Consensus pattern (314 bp):
AAGATTTAAGGCCGATTTAGGAATTCATATTTTAAGGTTTAGGGAGTATATATATATGGATTAAT
AGGGATTATGATTAGGGATTATGGTTTAATTAAGGGTTGGGATTTAAGGTTTAAGGGTTAGGGGT
TTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAGGGTTTAGGATTTCAGGGGTCGGTTA
GGGTTTTGGGTTTAGATTATATTTTTTATTTATATTTTAAATTTTTTATTATGTAATTGTAAAAG
ATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATTT
Found at i:26618702 original size:22 final size:22
Alignment explanation
Indices: 26618660--26618702 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
26618650 GTTTAGATAA
* *
26618660 ATTTTTTATTTATATTTTAAAT
1 ATTTTTTATGTATATTGTAAAT
26618682 ATTTTCTTATGTA-ATTGTAAA
1 ATTTT-TTATGTATATTGTAAA
26618703 AGATGTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (22 bp):
ATTTTTTATGTATATTGTAAAT
Found at i:26619036 original size:19 final size:18
Alignment explanation
Indices: 26619003--26619041 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
26618993 AAATTATACG
*
26619003 AAATAAAATTAAAATACAA
1 AAATAAAAATAAAATA-AA
*
26619022 AAATAAAAATGAAATAAA
1 AAATAAAAATAAAATAAA
26619040 AA
1 AA
26619042 CTCTAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (18 bp):
AAATAAAAATAAAATAAA
Found at i:26619105 original size:47 final size:47
Alignment explanation
Indices: 26619044--26619134 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
26619034 AATAAAAACT
** * * *
26619044 CTAAAATTTTTAATTTTGTCTAATTTTTATAAATATTACTTAAAAAA
1 CTAAAATTGATAATTTTATCTAAATTTTATAAATATTACCTAAAAAA
26619091 CTAAAATTGATAATTTTATCTAAATTTTATAAATATTACCTAAA
1 CTAAAATTGATAATTTTATCTAAATTTTATAAATATTACCTAAA
26619135 CAAAAGTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (47 bp):
CTAAAATTGATAATTTTATCTAAATTTTATAAATATTACCTAAAAAA
Found at i:26619518 original size:16 final size:15
Alignment explanation
Indices: 26619497--26619535 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
26619487 ACGATGTCGT
*
26619497 TTTATTCCCGTCCAAA
1 TTTATTCCCCTCC-AA
26619513 TTTATTCCCCTCCAA
1 TTTATTCCCCTCCAA
26619528 TTT-TTCCC
1 TTTATTCCC
26619536 ATACCCGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 5 0.23
16 12 0.55
ACGTcount: A:0.18, C:0.36, G:0.03, T:0.44
Consensus pattern (15 bp):
TTTATTCCCCTCCAA
Found at i:26619667 original size:16 final size:16
Alignment explanation
Indices: 26619646--26619707 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 16
26619636 TCTGCCATCG
*
26619646 CTCGTCCACCGTCGCA
1 CTCGTCTACCGTCGCA
*
26619662 CTCGTCGACCGTCGCA
1 CTCGTCTACCGTCGCA
**
26619678 GGCGTCTACCGTCGCA
1 CTCGTCTACCGTCGCA
*
26619694 CTCCTCTACCGTCG
1 CTCGTCTACCGTCG
26619708 GAGAAATCGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.11, C:0.45, G:0.23, T:0.21
Consensus pattern (16 bp):
CTCGTCTACCGTCGCA
Found at i:26622567 original size:66 final size:66
Alignment explanation
Indices: 26622461--26622592 Score: 185
Period size: 66 Copynumber: 2.0 Consensus size: 66
26622451 AGAAAATTAC
* * *
26622461 ACAACTTAAAGCGGAGGGAGCATCGAGAGAAGCTGAGGTTCAAA-AAAGATATGAAGAACTCCAG
1 ACAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAG-TATGAAGAACTCCAG
26622525 CT
65 CT
* * * *
26622527 ACAACTTAAAGTAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGGAAGTATGAAGATCTCCAGC
1 ACAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAGAACTCCAGC
26622592 T
66 T
26622593 GTAGCTTAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 55 0.95
67 3 0.05
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (66 bp):
ACAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAGAACTCCAGC
T
Found at i:26622601 original size:66 final size:66
Alignment explanation
Indices: 26622461--26622630 Score: 180
Period size: 66 Copynumber: 2.6 Consensus size: 66
26622451 AGAAAATTAC
* * * * *
26622461 ACAACTTAAAGCGGAGGGAGCATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
1 ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
26622526 T
66 T
** * *
26622527 ACAACTTAAAGTAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGGAAG-TATGAAGATCTCCAG
1 ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAA-AAAGATATGAAGAACTCCAG
26622591 CT
65 CT
** * * * * *
26622593 GTAGCTTAAAACAGATGCGGTAGCGAGGGAAGCAGAGG
1 ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGG
26622631 CAGCAGCGAG
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
66 84 0.97
67 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.30, T:0.16
Consensus pattern (66 bp):
ACAACTTAAAACAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGC
T
Found at i:26623148 original size:43 final size:44
Alignment explanation
Indices: 26622972--26623163 Score: 184
Period size: 43 Copynumber: 4.5 Consensus size: 44
26622962 CGTTTTTAAA
* * *
26622972 AAAAGCGTCGCTAAA-AGTCATGG-CTTTTAGCGGCATTTT-TTGG
1 AAAAGCGCCGCTAAAGAGTCATGGTC-TATAGCGGC-TTTTGTGGG
** * * *
26623015 AAAAGCGCCATTAAA-AGTCATGGTATATAGTGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGAGTCATGGTCTATAGCGGCTTTTGTGGG
* *
26623058 AAAAGCACCGCTAAAG-GTCATGGTCTATAGCGG-TGATTGTGGG
1 AAAAGCGCCGCTAAAGAGTCATGGTCTATAGCGGCT-TTTGTGGG
* **
26623101 AAAAGCGCCGCTAAAGA-TCATGGTCTATAGCGGCTTTTCTGTA
1 AAAAGCGCCGCTAAAGAGTCATGGTCTATAGCGGCTTTTGTGGG
26623144 AAAAGCGCCGCTAAAG-GTCA
1 AAAAGCGCCGCTAAAGAGTCA
26623164 AGTGCACCTT
Statistics
Matches: 122, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
42 3 0.02
43 118 0.97
44 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (44 bp):
AAAAGCGCCGCTAAAGAGTCATGGTCTATAGCGGCTTTTGTGGG
Found at i:26626286 original size:34 final size:34
Alignment explanation
Indices: 26626235--26626301 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
26626225 TCAGTTTAAT
* *
26626235 TGGGCCTTAACCTATTATAGTGACAGTATCAGTG
1 TGGGCCTTAACCCATTATAGTGACAGTAACAGTG
*
26626269 TGGGCCTTAGCCCATTATAGTGACAGTAACAGT
1 TGGGCCTTAACCCATTATAGTGACAGTAACAGT
26626302 TCAGACATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (34 bp):
TGGGCCTTAACCCATTATAGTGACAGTAACAGTG
Found at i:26626612 original size:27 final size:27
Alignment explanation
Indices: 26626570--26626778 Score: 260
Period size: 27 Copynumber: 7.8 Consensus size: 27
26626560 ATAACATTAA
*
26626570 GCAT-ATAGCCATTTTATAACATAGGG
1 GCATAATAGTCATTTTATAACATAGGG
*
26626596 GCATAATAATCATTTTATAACATAGGG
1 GCATAATAGTCATTTTATAACATAGGG
* *
26626623 GCATAATAGTTATTTTATAACATAAGG
1 GCATAATAGTCATTTTATAACATAGGG
** **
26626650 GCATAACCGTCATTTTATAACATAAAG
1 GCATAATAGTCATTTTATAACATAGGG
**
26626677 GCATAACCGTCATTTTATAACATAGGG
1 GCATAATAGTCATTTTATAACATAGGG
* *
26626704 ACATGATAGTCATTTTATAACATAGGG
1 GCATAATAGTCATTTTATAACATAGGG
* **
26626731 GCATAATAGTTATTTTACCACAT-GAGG
1 GCATAATAGTCATTTTATAACATAG-GG
26626758 GCATAATAGTCATTTTATAAC
1 GCATAATAGTCATTTTATAAC
26626779 CGTTTAAAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 5 0.03
27 153 0.97
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (27 bp):
GCATAATAGTCATTTTATAACATAGGG
Found at i:26631864 original size:15 final size:15
Alignment explanation
Indices: 26631844--26631876 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
26631834 AATTTTTTAA
26631844 AAATTA-TAAAAATAT
1 AAATTATTAAAAAT-T
26631859 AAATTATTAAAAATT
1 AAATTATTAAAAATT
26631874 AAA
1 AAA
26631877 ATTTTATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTATTAAAAATT
Found at i:26638739 original size:27 final size:26
Alignment explanation
Indices: 26638708--26638776 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 26
26638698 AAACTTAAAG
*
26638708 GAATGATATTCATGTCGAACTTTGAAT
1 GAATGATATTCATG-AGAACTTTGAAT
*
26638735 GAATGATATTTATAGAGAACTTTGAAT
1 GAATGATATTCAT-GAGAACTTTGAAT
* *
26638762 GAACGATATGCATGA
1 GAATGATATTCATGA
26638777 CAAACTATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.06
27 33 0.92
28 1 0.03
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (26 bp):
GAATGATATTCATGAGAACTTTGAAT
Found at i:26638782 original size:27 final size:27
Alignment explanation
Indices: 26638725--26638787 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
26638715 ATTCATGTCG
* ** *
26638725 AACTTTGAATGAATGATATTTATAGAG
1 AACTTTGAATGAACGATATGCATAGAA
26638752 AACTTTGAATGAACGATATGCAT-GACA
1 AACTTTGAATGAACGATATGCATAGA-A
*
26638779 AACTATGAA
1 AACTTTGAA
26638788 GGAAATATCC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (27 bp):
AACTTTGAATGAACGATATGCATAGAA
Found at i:26640307 original size:6 final size:6
Alignment explanation
Indices: 26640296--26640323 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
26640286 ATTTTGTTTC
26640296 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
26640324 TGAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:26647501 original size:859 final size:859
Alignment explanation
Indices: 26645843--26647560 Score: 3436
Period size: 859 Copynumber: 2.0 Consensus size: 859
26645833 TGTTTTATTA
26645843 TTGTGAGAATAATTGAACAATATAACTTTTGAATATAATATATTTTGTTATTTCATTTATTAATT
1 TTGTGAGAATAATTGAACAATATAACTTTTGAATATAATATATTTTGTTATTTCATTTATTAATT
26645908 TAGATCATACGCATATTTCTTTCGTAATAGTATTATTTAGATTTGAATTTTTTGGTTGGATTTGA
66 TAGATCATACGCATATTTCTTTCGTAATAGTATTATTTAGATTTGAATTTTTTGGTTGGATTTGA
26645973 TGTTACAGGAAATTATGTTGACAATTCAGGTTCTATATGAATTAGAATGGTTTGGTAAAATCTAC
131 TGTTACAGGAAATTATGTTGACAATTCAGGTTCTATATGAATTAGAATGGTTTGGTAAAATCTAC
26646038 TAAAGTTAGTGGCATTTTCCTACAAACGCCGCCAAAGAACATGACATTTAGCAGCACTTTTACTA
196 TAAAGTTAGTGGCATTTTCCTACAAACGCCGCCAAAGAACATGACATTTAGCAGCACTTTTACTA
26646103 AAAACACCACTAAAGAACATGATCTTTAGTGGCGTTTTCCCACATAAACGCAAAAAAATTTAGCG
261 AAAACACCACTAAAGAACATGATCTTTAGTGGCGTTTTCCCACATAAACGCAAAAAAATTTAGCG
26646168 GCGTTATTTATAGCGATGTTTATAGGGCCAAAAAAAGGCCGCTAAAAACCTGTTTTGCTGTAATG
326 GCGTTATTTATAGCGATGTTTATAGGGCCAAAAAAAGGCCGCTAAAAACCTGTTTTGCTGTAATG
26646233 AGTATTTGGATCAAGTTCAAATTTTTGAGTCAATATTATTTGGAAGTTCTTATTTAAATATCATC
391 AGTATTTGGATCAAGTTCAAATTTTTGAGTCAATATTATTTGGAAGTTCTTATTTAAATATCATC
26646298 TTGGTCTGAACAAGACTACGCTCAGACCATAAAATGGACGAGAACATGATTCAAAAAAATTGTAT
456 TTGGTCTGAACAAGACTACGCTCAGACCATAAAATGGACGAGAACATGATTCAAAAAAATTGTAT
26646363 AAAAATATCATGATTCTATACCCATTTCTTTTTAAAATTTCTTGTGAAAAGCATGCATGACAATA
521 AAAAATATCATGATTCTATACCCATTTCTTTTTAAAATTTCTTGTGAAAAGCATGCATGACAATA
26646428 ACTGCCAACTATTATTTAAGAAAATGTTTAAATATATAGAGAAAAATCTCAAAATATTATATAAA
586 ACTGCCAACTATTATTTAAGAAAATGTTTAAATATATAGAGAAAAATCTCAAAATATTATATAAA
26646493 TTTTTTTATACGATGCAATATGATATATATTAATTTTGATTTTGTGTGAAATTTTGATTTTAATT
651 TTTTTTTATACGATGCAATATGATATATATTAATTTTGATTTTGTGTGAAATTTTGATTTTAATT
26646558 TTTGCAAACTACTAATATTATTATCAACGTAATACTCTTTTAAATTTACTTATTACATATATACA
716 TTTGCAAACTACTAATATTATTATCAACGTAATACTCTTTTAAATTTACTTATTACATATATACA
26646623 CGACTATATTTGTCTCATACGAAAATAATTGAACTTATTTGTTTTTAAAGTATTTATAATTAAAA
781 CGACTATATTTGTCTCATACGAAAATAATTGAACTTATTTGTTTTTAAAGTATTTATAATTAAAA
26646688 TTAAATTAAATTTT
846 TTAAATTAAATTTT
26646702 TTGTGAGAATAATTGAACAATATAACTTTTGAATATAATATATTTTGTTATTTCATTTATTAATT
1 TTGTGAGAATAATTGAACAATATAACTTTTGAATATAATATATTTTGTTATTTCATTTATTAATT
26646767 TAGATCATACGCATATTTCTTTCGTAATAGTATTATTTAGATTTGAATTTTTTGGTTGGATTTGA
66 TAGATCATACGCATATTTCTTTCGTAATAGTATTATTTAGATTTGAATTTTTTGGTTGGATTTGA
26646832 TGTTACAGGAAATTATGTTGACAATTCAGGTTCTATATGAATTAGAATGGTTTGGTAAAATCTAC
131 TGTTACAGGAAATTATGTTGACAATTCAGGTTCTATATGAATTAGAATGGTTTGGTAAAATCTAC
26646897 TAAAGTTAGTGGCATTTTCCTACAAACGCCGCCAAAGAACATGACATTTAGCAGCACTTTTACTA
196 TAAAGTTAGTGGCATTTTCCTACAAACGCCGCCAAAGAACATGACATTTAGCAGCACTTTTACTA
26646962 AAAACACCACTAAAGAACATGATCTTTAGTGGCGTTTTCCCACATAAACGCAAAAAAATTTAGCG
261 AAAACACCACTAAAGAACATGATCTTTAGTGGCGTTTTCCCACATAAACGCAAAAAAATTTAGCG
26647027 GCGTTATTTATAGCGATGTTTATAGGGCCAAAAAAAGGCCGCTAAAAACCTGTTTTGCTGTAATG
326 GCGTTATTTATAGCGATGTTTATAGGGCCAAAAAAAGGCCGCTAAAAACCTGTTTTGCTGTAATG
26647092 AGTATTTGGATCAAGTTCAAATTTTTGAGTCAATATTATTTGGAAGTTCTTATTTAAATATCATC
391 AGTATTTGGATCAAGTTCAAATTTTTGAGTCAATATTATTTGGAAGTTCTTATTTAAATATCATC
26647157 TTGGTCTGAACAAGACTACGCTCAGACCATAAAATGGACGAGAACATGATTCAAAAAAATTGTAT
456 TTGGTCTGAACAAGACTACGCTCAGACCATAAAATGGACGAGAACATGATTCAAAAAAATTGTAT
26647222 AAAAATATCATGATTCTATACCCATTTCTTTTTAAAATTTCTTGTGAAAAGCATGCATGACAATA
521 AAAAATATCATGATTCTATACCCATTTCTTTTTAAAATTTCTTGTGAAAAGCATGCATGACAATA
26647287 ACTGCCAACTATTATTTAAGAAAATGTTTAAATATATAGAGAAAAATCTCAAAATATTATATAAA
586 ACTGCCAACTATTATTTAAGAAAATGTTTAAATATATAGAGAAAAATCTCAAAATATTATATAAA
26647352 TTTTTTTATACGATGCAATATGATATATATTAATTTTGATTTTGTGTGAAATTTTGATTTTAATT
651 TTTTTTTATACGATGCAATATGATATATATTAATTTTGATTTTGTGTGAAATTTTGATTTTAATT
26647417 TTTGCAAACTACTAATATTATTATCAACGTAATACTCTTTTAAATTTACTTATTACATATATACA
716 TTTGCAAACTACTAATATTATTATCAACGTAATACTCTTTTAAATTTACTTATTACATATATACA
26647482 CGACTATATTTGTCTCATACGAAAATAATTGAACTTATTTGTTTTTAAAGTATTTATAATTAAAA
781 CGACTATATTTGTCTCATACGAAAATAATTGAACTTATTTGTTTTTAAAGTATTTATAATTAAAA
26647547 TTAAATTAAATTTT
846 TTAAATTAAATTTT
26647561 ATAAAGGCAA
Statistics
Matches: 859, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
859 859 1.00
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.38
Consensus pattern (859 bp):
TTGTGAGAATAATTGAACAATATAACTTTTGAATATAATATATTTTGTTATTTCATTTATTAATT
TAGATCATACGCATATTTCTTTCGTAATAGTATTATTTAGATTTGAATTTTTTGGTTGGATTTGA
TGTTACAGGAAATTATGTTGACAATTCAGGTTCTATATGAATTAGAATGGTTTGGTAAAATCTAC
TAAAGTTAGTGGCATTTTCCTACAAACGCCGCCAAAGAACATGACATTTAGCAGCACTTTTACTA
AAAACACCACTAAAGAACATGATCTTTAGTGGCGTTTTCCCACATAAACGCAAAAAAATTTAGCG
GCGTTATTTATAGCGATGTTTATAGGGCCAAAAAAAGGCCGCTAAAAACCTGTTTTGCTGTAATG
AGTATTTGGATCAAGTTCAAATTTTTGAGTCAATATTATTTGGAAGTTCTTATTTAAATATCATC
TTGGTCTGAACAAGACTACGCTCAGACCATAAAATGGACGAGAACATGATTCAAAAAAATTGTAT
AAAAATATCATGATTCTATACCCATTTCTTTTTAAAATTTCTTGTGAAAAGCATGCATGACAATA
ACTGCCAACTATTATTTAAGAAAATGTTTAAATATATAGAGAAAAATCTCAAAATATTATATAAA
TTTTTTTATACGATGCAATATGATATATATTAATTTTGATTTTGTGTGAAATTTTGATTTTAATT
TTTGCAAACTACTAATATTATTATCAACGTAATACTCTTTTAAATTTACTTATTACATATATACA
CGACTATATTTGTCTCATACGAAAATAATTGAACTTATTTGTTTTTAAAGTATTTATAATTAAAA
TTAAATTAAATTTT
Found at i:26648408 original size:23 final size:23
Alignment explanation
Indices: 26648353--26648408 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
26648343 AATTTGATGA
*
26648353 TTGAATTATTTTAAAGTTTTTAT
1 TTGAATTATTTAAAAGTTTTTAT
*
26648376 TTGAACTATTTAAAAGTTTTTAT
1 TTGAATTATTTAAAAGTTTTTAT
26648399 TT-AAGTTATT
1 TTGAA-TTATT
26648409 AAGTTTTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 2 0.07
23 27 0.93
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (23 bp):
TTGAATTATTTAAAAGTTTTTAT
Found at i:26649341 original size:166 final size:167
Alignment explanation
Indices: 26649067--26649400 Score: 661
Period size: 166 Copynumber: 2.0 Consensus size: 167
26649057 GGATTTGCAA
26649067 ATTAGCATTACACTATTGCATTCCTACCACTCATTCACCCACACGCTCATACCTAGTATTTAATT
1 ATTAGCATTACACTATTGCATTCCTACCACTCATTCACCCACACGCTCATACCTAGTATTTAATT
26649132 CATATCAATTTTTCATTCCATTCTTAAACATTTTTTTACTATTATTATCATAAAAAATAATAAAA
66 CATATCAATTTTTCATTCCATTCTTAAACATTTTTTTACTATTATTATCATAAAAAATAATAAAA
26649197 TAAAAATATTTTAAAGTAGAGAAGAA-TCATTTATAT
131 TAAAAATATTTTAAAGTAGAGAAGAATTCATTTATAT
26649233 ATTAGCATTACACTATTGCATTCCTACCACTCATTCACCCACACGCTCATACCTAGTATTTAATT
1 ATTAGCATTACACTATTGCATTCCTACCACTCATTCACCCACACGCTCATACCTAGTATTTAATT
26649298 CATATCAATTTTTCATTCCATTCTTAAACATTTTTTTACTATTATTATCATAAAAAATAATAAAA
66 CATATCAATTTTTCATTCCATTCTTAAACATTTTTTTACTATTATTATCATAAAAAATAATAAAA
26649363 TAAAAATATTTTAAAGTAGAGAAGAATTCATTTATAT
131 TAAAAATATTTTAAAGTAGAGAAGAATTCATTTATAT
26649400 A
1 A
26649401 GTGTCAAAAT
Statistics
Matches: 167, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
166 156 0.93
167 11 0.07
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.39
Consensus pattern (167 bp):
ATTAGCATTACACTATTGCATTCCTACCACTCATTCACCCACACGCTCATACCTAGTATTTAATT
CATATCAATTTTTCATTCCATTCTTAAACATTTTTTTACTATTATTATCATAAAAAATAATAAAA
TAAAAATATTTTAAAGTAGAGAAGAATTCATTTATAT
Found at i:26656270 original size:45 final size:45
Alignment explanation
Indices: 26656174--26656373 Score: 172
Period size: 45 Copynumber: 4.5 Consensus size: 45
26656164 TTGGAAATAT
* * * * ** **
26656174 AGGTGGATGCTATGTGCTTATTCCACCCAATATTAATGAAAATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAGTACCAATGAGTATAA
* * ** *
26656219 ATGTGGTTGCTATGTACTGATTTCA-CTGGATACCAATG-GTTATAT
1 AGGTGGTTGCTATGTGCTGATTTCACCCAG-TACCAATGAG-TATAA
*
26656264 AGGTGGTTGCTATGTGCTGATTTCACCCAGTACCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAGTACCAATGAGTATAA
* * * * *
26656309 AGGTAGTTGCTATGTGCTGATTTCACCAAGTACTATTGACTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAGTACCAATGAGTATAA
* *
26656354 GGGTGG-TGCTGTGTGCTGAT
1 AGGTGGTTGCTATGTGCTGAT
26656374 CCACCGTGTA
Statistics
Matches: 125, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
44 14 0.11
45 108 0.86
46 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (45 bp):
AGGTGGTTGCTATGTGCTGATTTCACCCAGTACCAATGAGTATAA
Found at i:26656309 original size:90 final size:90
Alignment explanation
Indices: 26656170--26656334 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 90
26656160 ATCATTGGAA
* ** * *
26656170 ATATAGGTGGATGCTATGTGCTTATTCCACCCAATATTAATGAAAATAAATGTGGTTGCTATGTA
1 ATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAAAGGTAGTTGCTATGTA
26656235 CTGATTTCACTGGATACCAATGGTT
66 CTGATTTCACTGGATACCAATGGTT
* * * * ** *
26656260 ATATAGGTGGTTGCTATGTGCTGATTTCACCCAGTACCATTGAGTATAAAGGTAGTTGCTATGTG
1 ATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAAAGGTAGTTGCTATGTA
26656325 CTGATTTCAC
66 CTGATTTCAC
26656335 CAAGTACTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 63 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (90 bp):
ATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAAAGGTAGTTGCTATGTA
CTGATTTCACTGGATACCAATGGTT
Found at i:26660491 original size:43 final size:43
Alignment explanation
Indices: 26660421--26660542 Score: 167
Period size: 43 Copynumber: 2.8 Consensus size: 43
26660411 GGCTTGTACA
* * * * *
26660421 ATGCCAACGTCCCAGACGTGGTTTTACATGTAACCACAGATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAAATCG
26660464 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAAACACAAATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAAACACAAATCG
26660507 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACA
26660543 GTTTTCGAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
42 3 0.04
43 64 0.91
44 3 0.04
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.19
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAAATCG
Found at i:26665141 original size:37 final size:38
Alignment explanation
Indices: 26665100--26665182 Score: 100
Period size: 37 Copynumber: 2.2 Consensus size: 38
26665090 ACCCTATACC
26665100 TCAAAATTTT-CAATTTTTA-GAAAATAGTCCCTAAAAT
1 TCAAAATTTTACAATTTTTATG-AAATAGTCCCTAAAAT
** *
26665137 TC-AAATTTTACAATTTTTATGATTTTGTCCCTAAAAT
1 TCAAAATTTTACAATTTTTATGAAATAGTCCCTAAAAT
*
26665174 CCAAAATTT
1 TCAAAATTT
26665183 ACACTATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
36 7 0.18
37 25 0.64
38 7 0.18
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.42
Consensus pattern (38 bp):
TCAAAATTTTACAATTTTTATGAAATAGTCCCTAAAAT
Found at i:26671701 original size:26 final size:24
Alignment explanation
Indices: 26671671--26671722 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26671661 AAATTTTTAT
26671671 CAAATTAATCACTTAAAATCATCCAC
1 CAAATTAATCA--TAAAATCATCCAC
* *
26671697 CAAATTATTCATAAAATCATTCAC
1 CAAATTAATCATAAAATCATCCAC
26671721 CA
1 CA
26671723 GTCATATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.58
26 10 0.42
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (24 bp):
CAAATTAATCATAAAATCATCCAC
Found at i:26676025 original size:43 final size:43
Alignment explanation
Indices: 26675977--26676064 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
26675967 ATTGAAACGT
*
26675977 AATTTAAAATTTATGCAAAATGCTATATACCCCCTTTAAAGGG
1 AATTTAAAATTTATGCAAAATGCCATATACCCCCTTTAAAGGG
26676020 AATTTAAAATTTATGCAAAATGCCATATACCCCCTTTAAAGGG
1 AATTTAAAATTTATGCAAAATGCCATATACCCCCTTTAAAGGG
26676063 AA
1 AA
26676065 ACAATATACT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (43 bp):
AATTTAAAATTTATGCAAAATGCCATATACCCCCTTTAAAGGG
Found at i:26677422 original size:50 final size:50
Alignment explanation
Indices: 26677305--26677531 Score: 158
Period size: 50 Copynumber: 4.4 Consensus size: 50
26677295 GAGATCCAAT
* * ** * *
26677305 GTAAGACCATGTCCGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCGAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-A--ATGAGAACTCCCAC
* *
26677361 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAAATGAGAGA-TCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATGAGA-ACTCCCAC
* * * * * *
26677411 GTAAGACCATGTCTAGGACCTGACATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATGAGAACTCCCAC
* * * *
26677461 GTAAGACCATATCTGGGATATGGCATTGGTA--GTACAA-GA-AACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCG-A-AATGAGAAC-TCCCAC
*
26677510 GTAAGACCATGTTTGGGACATG
1 GTAAGACCATGTCTGGGACATG
26677532 AATTTGGCAT
Statistics
Matches: 140, Mismatches: 26, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
48 4 0.03
49 29 0.21
50 74 0.53
52 1 0.01
53 2 0.01
55 1 0.01
56 29 0.21
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATGAGAACTCCCAC
Found at i:26679496 original size:17 final size:17
Alignment explanation
Indices: 26679469--26679514 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 17
26679459 AAAGTTTAGG
26679469 GGGGAAATAAAAAGTTTT
1 GGGGAAAT-AAAAGTTTT
26679487 GGGG-AATAAAAG-TTT
1 GGGGAAATAAAAGTTTT
26679502 GAGGGAAAGTAAA
1 G-GGGAAA-TAAA
26679515 TAGGGGGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 4 0.16
16 8 0.32
17 5 0.20
18 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.22
Consensus pattern (17 bp):
GGGGAAATAAAAGTTTT
Found at i:26679882 original size:9 final size:9
Alignment explanation
Indices: 26679868--26679931 Score: 92
Period size: 9 Copynumber: 7.1 Consensus size: 9
26679858 TATAGTTTGA
*
26679868 TATTCGAGT
1 TATTCGAAT
26679877 TATTCGAAT
1 TATTCGAAT
26679886 TATTCGAAT
1 TATTCGAAT
*
26679895 TATTCGACT
1 TATTCGAAT
26679904 TATTCGAAT
1 TATTCGAAT
*
26679913 TATTCGAGT
1 TATTCGAAT
*
26679922 TATTCAAAT
1 TATTCGAAT
26679931 T
1 T
26679932 CGAAAACTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26695247 original size:24 final size:23
Alignment explanation
Indices: 26695215--26695260 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
26695205 TAGGGGTAGG
* *
26695215 ATCTTTTTATGCATTCGTATCTGT
1 ATCTATTTATGAATT-GTATCTGT
26695239 ATCTATTTATGAATTGTATCTG
1 ATCTATTTATGAATTGTATCTG
26695261 ATTCTGTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.22, C:0.13, G:0.13, T:0.52
Consensus pattern (23 bp):
ATCTATTTATGAATTGTATCTGT
Found at i:26698080 original size:27 final size:26
Alignment explanation
Indices: 26698027--26698083 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
26698017 TAGGTTAGTT
* * *
26698027 TTAAAATAAGTAATATATAAAATAAC
1 TTAAAATAAATAATATACAAAACAAC
*
26698053 TTAAAATAAAATAATATACAAAGCAAC
1 TTAAAAT-AAATAATATACAAAACAAC
26698080 TTAA
1 TTAA
26698084 TGTAAATACT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (26 bp):
TTAAAATAAATAATATACAAAACAAC
Found at i:26704212 original size:43 final size:42
Alignment explanation
Indices: 26704129--26704214 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 42
26704119 TTTTATCCTA
** * *
26704129 TAAAAAAATATTTTGAACAAGGAGAAGATAATCTTGGGTTGT
1 TAAAAAAATATTTAAAAAAAGGAGAAGATAAACTTGGGTTGT
26704171 TAAAAAAATAATTTAAAAAAAGGAGAAGATAAACATT-GGTTGT
1 TAAAAAAAT-ATTTAAAAAAAGGAGAAGATAAAC-TTGGGTTGT
26704214 T
1 T
26704215 GGATTTACCC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 9 0.24
43 27 0.71
44 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.19, T:0.29
Consensus pattern (42 bp):
TAAAAAAATATTTAAAAAAAGGAGAAGATAAACTTGGGTTGT
Found at i:26705324 original size:33 final size:33
Alignment explanation
Indices: 26705287--26705355 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
26705277 GATTTGACGT
26705287 GTATACTTGCAGAATTCGTATATCATTTCACAC
1 GTATACTTGCAGAATTCGTATATCATTTCACAC
26705320 GTATACTTGCAGAATTCGTATATCATTTCACAC
1 GTATACTTGCAGAATTCGTATATCATTTCACAC
26705353 GTA
1 GTA
26705356 ACAAGTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.36
Consensus pattern (33 bp):
GTATACTTGCAGAATTCGTATATCATTTCACAC
Found at i:26705341 original size:17 final size:17
Alignment explanation
Indices: 26705287--26705341 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
26705277 GATTTGACGT
26705287 GTATACTTGCAGAATTC
1 GTATACTTGCAGAATTC
* *
26705304 GTATATCATTTCA-CA--C
1 GTATA-C-TTGCAGAATTC
26705320 GTATACTTGCAGAATTC
1 GTATACTTGCAGAATTC
26705337 GTATA
1 GTATA
26705342 TCATTTCACA
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
14 4 0.14
15 2 0.07
16 6 0.21
17 11 0.38
18 2 0.07
19 4 0.14
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (17 bp):
GTATACTTGCAGAATTC
Found at i:26715311 original size:9 final size:9
Alignment explanation
Indices: 26715297--26715321 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26715287 TTGCTCCCTA
26715297 TCTTCCTCC
1 TCTTCCTCC
26715306 TCTTCCTCC
1 TCTTCCTCC
26715315 TCTTCCT
1 TCTTCCT
26715322 TGTAATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (9 bp):
TCTTCCTCC
Found at i:26727273 original size:26 final size:26
Alignment explanation
Indices: 26727230--26727290 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
26727220 TATCCGAAGC
* * * *
26727230 TCCTAATTAAAGGCTCTTCGTGAGCT
1 TCCTGATTAAAAGCTCTTCGTAAACT
* *
26727256 TCCTGATTAAAAGTTCTTTGTAAACT
1 TCCTGATTAAAAGCTCTTCGTAAACT
26727282 TCCTGATTA
1 TCCTGATTA
26727291 TGGCTTTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (26 bp):
TCCTGATTAAAAGCTCTTCGTAAACT
Found at i:26733089 original size:75 final size:76
Alignment explanation
Indices: 26732962--26733216 Score: 282
Period size: 75 Copynumber: 3.4 Consensus size: 76
26732952 ACAAATTATT
* *
26732962 GTCGGTTTATCCGACTAGCGCTGGGTGCAACTTTCATCAATTTAACTGACTAGTGCTGGGCACAT
1 GTCGGTTTATCCGACTAGAGCTGGGTGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACAT
* *
26733027 CTTTATACTCA
66 CATTATACTAA
* * * * *
26733038 -TCGGTTTACCCGACTAGAGCTGGTTGCAACTTTCATTAGTTTAACTAACTAGTGTTGGGCACAT
1 GTCGGTTTATCCGACTAGAGCTGGGTGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACAT
*
26733102 CATTAT-GTAA
66 CATTATACTAA
* * * * * **
26733112 GTCGGTCTATTCGACTAGTGTTGGGCGCAACCATCATCAGTTTAACTGACTAGTGCTGGGCACAT
1 GTCGGTTTATCCGACTAGAGCTGGGTGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACAT
*
26733177 CATTATA-TAT
66 CATTATACTAA
* * * * *
26733187 GTCAGTCTATCCAACTAGCGCTGGGCGCAA
1 GTCGGTTTATCCGACTAGAGCTGGGTGCAA
26733217 AACTTGATTA
Statistics
Matches: 149, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
74 2 0.01
75 147 0.99
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (76 bp):
GTCGGTTTATCCGACTAGAGCTGGGTGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACAT
CATTATACTAA
Found at i:26734327 original size:54 final size:54
Alignment explanation
Indices: 26734251--26734374 Score: 167
Period size: 54 Copynumber: 2.3 Consensus size: 54
26734241 CTCAGCCTGC
* * *
26734251 GACACGGCCATGTGACTCAAGTCAGTAAGTTACACGGAAAGAGACACGGGCTGA
1 GACACGGCCGTGTGTCTCAAGTCAGTAAGTTACACAGAAAGAGACACGGGCTGA
* * ** * *
26734305 GACACGGCCGTGTGTCTGAAGTCAGTGAGTTTTACAGATAGAGACACGGGTTGA
1 GACACGGCCGTGTGTCTCAAGTCAGTAAGTTACACAGAAAGAGACACGGGCTGA
26734359 GACACGGCCGTGTGTC
1 GACACGGCCGTGTGTC
26734375 CCAATTTCGA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.19
Consensus pattern (54 bp):
GACACGGCCGTGTGTCTCAAGTCAGTAAGTTACACAGAAAGAGACACGGGCTGA
Found at i:26736218 original size:19 final size:19
Alignment explanation
Indices: 26736194--26736232 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
26736184 ACTCATTAGG
*
26736194 TTAGTGGAAAATCGAGAGA
1 TTAGTGGAAAATCAAGAGA
*
26736213 TTAGTGGAACATCAAGAGA
1 TTAGTGGAAAATCAAGAGA
26736232 T
1 T
26736233 CTCGCTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.08, G:0.28, T:0.23
Consensus pattern (19 bp):
TTAGTGGAAAATCAAGAGA
Found at i:26740931 original size:16 final size:16
Alignment explanation
Indices: 26740912--26740954 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
26740902 CATTAATTAA
*
26740912 TTAATTAATTATTGTT
1 TTAATTAATTATTATT
*
26740928 TTAAATAA-TATTATT
1 TTAATTAATTATTATT
26740943 TTACATTAATTA
1 TTA-ATTAATTA
26740955 CATAAAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 9 0.41
16 11 0.50
17 2 0.09
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
TTAATTAATTATTATT
Found at i:26741135 original size:26 final size:26
Alignment explanation
Indices: 26741106--26741156 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26741096 TCTAATTATT
*
26741106 ATAATTAAA-AATATAATATTTAAAAA
1 ATAATTAAATAATA-AATATGTAAAAA
26741132 ATAATTAAATAATAAATATGTAAAA
1 ATAATTAAATAATAAATATGTAAAA
26741157 TCAAAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
ATAATTAAATAATAAATATGTAAAAA
Found at i:26747891 original size:2 final size:2
Alignment explanation
Indices: 26747884--26747916 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
26747874 ATTTATCTAC
26747884 TA TA TA TA TA T- TCA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T
26747917 TATTTTCCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.03
2 27 0.93
3 1 0.03
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26753300 original size:50 final size:50
Alignment explanation
Indices: 26753238--26753407 Score: 241
Period size: 50 Copynumber: 3.4 Consensus size: 50
26753228 CAATATCATA
* ** * * *
26753238 TCCCAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
** *
26753288 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
* *
26753338 TCCCTGACATGGTCTTACATGGGACCTCTTATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
26753388 TCCCAGACATGGTCTTACAT
1 TCCCAGACATGGTCTTACAT
26753408 ACCTCTTTAC
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 105 1.00
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
Found at i:26756322 original size:37 final size:37
Alignment explanation
Indices: 26756272--26756373 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 37
26756262 CGTATTGAGA
* * *
26756272 TCTGATTTGCATGTTAAACATGCCATATTTTTTATAT
1 TCTGATTCGCATGTTAAACATGCCATATTTCTGATAT
* *
26756309 TCTGATTCGCATGTAAAACATGTCATATTTCTGATAT
1 TCTGATTCGCATGTTAAACATGCCATATTTCTGATAT
*
26756346 TCTGATTCGCTTG-TAAAGCATGCC-TATT
1 TCTGATTCGCATGTTAAA-CATGCCATATT
26756374 GAAAATCTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 7 0.12
37 49 0.88
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (37 bp):
TCTGATTCGCATGTTAAACATGCCATATTTCTGATAT
Found at i:26756956 original size:19 final size:19
Alignment explanation
Indices: 26756932--26756982 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
26756922 TTAATTATTT
*
26756932 TGGACTTTGGTTTTGGACA
1 TGGACTTTGGATTTGGACA
26756951 TGGACTTTGGATTTGGACA
1 TGGACTTTGGATTTGGACA
26756970 TGGACTTTGGATT
1 TGGACTTTGGATT
26756983 ATTTTTGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.18, C:0.10, G:0.31, T:0.41
Consensus pattern (19 bp):
TGGACTTTGGATTTGGACA
Found at i:26757786 original size:57 final size:55
Alignment explanation
Indices: 26757723--26757828 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 55
26757713 TGTCCCAGCT
*
26757723 TGTGTGTATACTGAAATTAAGGTCACACGGCCGTGTCGCAGGGCGTGTGCCTGCCCG
1 TGTGTGTATAC-GAAATT-AGGTCACACGGCCGTGTCGCAGGCCGTGTGCCTGCCCG
* * * *
26757780 TGTGTGTATTCGAAGTTTGGTCACACGGTCGTGTCGCAGGCCGTGTGCC
1 TGTGTGTATACGAAATTAGGTCACACGGCCGTGTCGCAGGCCGTGTGCC
26757829 AGATCATGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
55 29 0.66
56 5 0.11
57 10 0.23
ACGTcount: A:0.15, C:0.24, G:0.34, T:0.27
Consensus pattern (55 bp):
TGTGTGTATACGAAATTAGGTCACACGGCCGTGTCGCAGGCCGTGTGCCTGCCCG
Found at i:26759169 original size:75 final size:74
Alignment explanation
Indices: 26758938--26759186 Score: 272
Period size: 75 Copynumber: 3.3 Consensus size: 74
26758928 AAATCAATAG
* * * * * * * *
26758938 ATATAATGATGTTCCCAGCACTAGTAAGAAAAACTGACGAAAGTTGCACCTAGCGCTAGTTAG-A
1 ATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGATGAAAGTTTCGCC-AGCACTAG-TCGTA
*
26759002 TAAATCGAAAA
64 TAAACCGAAAA
* *
26759013 ATATAATGGTGTGCCCAGCACTAGTAAGAT-AATTGATGAAA-TTTGCGCTCAGCAGTAGTCGTA
1 ATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGATGAAAGTTT-CGC-CAGCACTAGTCGTA
*
26759076 AAAACC-AAAA
64 TAAACCGAAAA
* *
26759086 ACTATAATGGTGTGCCCAGCACTAGTCAGATAAACTGATGAAAGTTTCGCCAAACACTAGTCGTA
1 A-TATAATGGTGTGCCCAGCACTAGTAAGATAAACTGATGAAAGTTTCGCC-AGCACTAGTCGTA
*
26759151 TAAACCGACAA
64 TAAACCGAAAA
*
26759162 ATATAATGGTGTGTCCAGCACTAGT
1 ATATAATGGTGTGCCCAGCACTAGT
26759187 TGCATAAATC
Statistics
Matches: 147, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
73 9 0.06
74 51 0.35
75 80 0.54
76 7 0.05
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (74 bp):
ATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGATGAAAGTTTCGCCAGCACTAGTCGTATA
AACCGAAAA
Found at i:26760555 original size:38 final size:38
Alignment explanation
Indices: 26760509--26760585 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
26760499 CAGTAACTTG
*
26760509 ATCAATGGCTTATTTGCCTAATAAACCCCTTGTTTGAT
1 ATCAATGGCTTATTTGCCTAATAAACACCTTGTTTGAT
*
26760547 ATCAATGGCTTATTTGCCTAATAAGCACCTTGTTTGAT
1 ATCAATGGCTTATTTGCCTAATAAACACCTTGTTTGAT
26760585 A
1 A
26760586 GTCACTTATG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.39
Consensus pattern (38 bp):
ATCAATGGCTTATTTGCCTAATAAACACCTTGTTTGAT
Found at i:26765897 original size:75 final size:74
Alignment explanation
Indices: 26765817--26766053 Score: 270
Period size: 75 Copynumber: 3.3 Consensus size: 74
26765807 TAATTTGACG
* * * * * *
26765817 AATATAATGATGTGCCTATCACTAGTTAGATAAACTGACAAAAGTTACACCCAGCGCTAGTTAGA
1 AATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGAC-AAAGTTACGCCCAGCGCTAGTTGGA
26765882 TAAACCGAAA
65 TAAACCGAAA
*
26765892 AATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGAC---G-T--GCCTAGCGCTAGTTGGAT
1 AATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGACAAAGTTACGCCCAGCGCTAGTTGGAT
**
26765951 AAACCGAGC
66 AAACCGAAA
* * **
26765960 AATATAATGGTGTGCCCAGCACTAGTCAGATAAACTAACGAAAGTTACGCCCAATGCTAGTTGGA
1 AATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGAC-AAAGTTACGCCCAGCGCTAGTTGGA
** *
26766025 TAAACATATA
65 TAAACCGAAA
26766035 AATATAATGGTGTGCCCAG
1 AATATAATGGTGTGCCCAG
26766054 AGTAGTTGAA
Statistics
Matches: 137, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
68 59 0.43
70 1 0.01
71 1 0.01
72 1 0.01
73 1 0.01
75 74 0.54
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (74 bp):
AATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGACAAAGTTACGCCCAGCGCTAGTTGGAT
AAACCGAAA
Found at i:26765978 original size:68 final size:68
Alignment explanation
Indices: 26765869--26765995 Score: 218
Period size: 68 Copynumber: 1.9 Consensus size: 68
26765859 AGTTACACCC
26765869 AGCGCTAGTTAGATAAACCGAAAAATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGACGTG
1 AGCGCTAGTTAGATAAACCGAAAAATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGACGTG
26765934 CCT
66 CCT
* ** *
26765937 AGCGCTAGTTGGATAAACCGAGCAATATAATGGTGTGCCCAGCACTAGTCAGATAAACT
1 AGCGCTAGTTAGATAAACCGAAAAATATAATGGTGTGCCCAGCACTAGTAAGATAAACT
26765996 AACGAAAGTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 55 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (68 bp):
AGCGCTAGTTAGATAAACCGAAAAATATAATGGTGTGCCCAGCACTAGTAAGATAAACTGACGTG
CCT
Found at i:26769163 original size:36 final size:36
Alignment explanation
Indices: 26769115--26769185 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
26769105 ATCAAAGGCT
*
26769115 ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
*
26769151 ATAATTAGAAGCTGTATACAATTAAAACTCTAAGA
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGA
26769186 TTAAATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (36 bp):
ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
Found at i:26770946 original size:243 final size:243
Alignment explanation
Indices: 26770518--26771003 Score: 900
Period size: 243 Copynumber: 2.0 Consensus size: 243
26770508 TGTTGGCACA
*
26770518 CTAGACAAGTTTTCACATAGGTTTCTACATCCGCACCCATGTGAGGCAAGTAATAACGATCCTCC
1 CTAGACAAGTTTTCACATAGGTTTCTACATCAGCACCCATGTGAGGCAAGTAATAACGATCCTCC
26770583 AAAAGGGCCAAAGTGCGATGCATCCCTGGATGGCCTGCCCATTTCGAGTCATGACACTCCTTCAT
66 AAAAGGGCCAAAGTGCGATGCATCCCTGGATGGCCTGCCCATTTCGAGTCATGACACTCCTTCAT
26770648 TACTTCCTTACGGAGTTTCCCATAATGGGGCACATAGAGGCGGTGTCCATGAGTGTATAATAGCT
131 TACTTCCTTACGGAGTTTCCCATAATGGGGCACATAGAGGCGGTGTCCATGAGTGTATAATAGCT
26770713 CCCCATCAAGCCAAAATCTTCTCATTTTTCCCTCCTTGGCAAGCTCAC
196 CCCCATCAAGCCAAAATCTTCTCATTTTTCCCTCCTTGGCAAGCTCAC
* *
26770761 CTAGACAAGTTTTCACATAGGTTTCTACATCAGCATCCATGTGAGGCCAGTAATAACGATCCTCC
1 CTAGACAAGTTTTCACATAGGTTTCTACATCAGCACCCATGTGAGGCAAGTAATAACGATCCTCC
*
26770826 AAAAGGGCCAAAGTGCGATGCATCCCTGGATGGCCTGCCCATTTTGAGTCATGACACTCCTTCAT
66 AAAAGGGCCAAAGTGCGATGCATCCCTGGATGGCCTGCCCATTTCGAGTCATGACACTCCTTCAT
*
26770891 TACTTTCTTACGGAGTTTCCCATAATGGGGCACATAGAGGCGGTGTCCATGAGTGTATAATAGCT
131 TACTTCCTTACGGAGTTTCCCATAATGGGGCACATAGAGGCGGTGTCCATGAGTGTATAATAGCT
* * *
26770956 CCCCATCAAGCCAGAATCTTCTCGTTTTTCCCTCTTTGGCAAGCTCAC
196 CCCCATCAAGCCAAAATCTTCTCATTTTTCCCTCCTTGGCAAGCTCAC
26771004 TCAAATTTTT
Statistics
Matches: 235, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
243 235 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (243 bp):
CTAGACAAGTTTTCACATAGGTTTCTACATCAGCACCCATGTGAGGCAAGTAATAACGATCCTCC
AAAAGGGCCAAAGTGCGATGCATCCCTGGATGGCCTGCCCATTTCGAGTCATGACACTCCTTCAT
TACTTCCTTACGGAGTTTCCCATAATGGGGCACATAGAGGCGGTGTCCATGAGTGTATAATAGCT
CCCCATCAAGCCAAAATCTTCTCATTTTTCCCTCCTTGGCAAGCTCAC
Found at i:26774292 original size:36 final size:36
Alignment explanation
Indices: 26774244--26774314 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
26774234 ATCAAAGGCT
*
26774244 ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
*
26774280 ATAATTAGAAGCTGTATACAATTAAAACTCTAAGA
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGA
26774315 TTAAATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (36 bp):
ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
Found at i:26783895 original size:60 final size:60
Alignment explanation
Indices: 26783710--26783896 Score: 216
Period size: 60 Copynumber: 3.1 Consensus size: 60
26783700 AAAATGAAGA
* * * * * ** * *
26783710 GGTGCTCCTGTATACCCTTCGATGTCCCTGTTTGCATGACTGTGCCTTTGTTCGCACTTC
1 GGTGCCCCTATATACACTTCGGTGTCACTGTTTGCACAATTGTGCCCTTGTTCGCACTTC
* * *
26783770 GGTACCCCTGTATACACTTCGGTGTCCCTGTTTGCACAATTGTGCCCTTGTTCGCACTTC
1 GGTGCCCCTATATACACTTCGGTGTCACTGTTTGCACAATTGTGCCCTTGTTCGCACTTC
* *
26783830 AGTGCCCCTATATACACTTCGGTGTCACTGTTTGCA-AGTTTGTTGCCC-TGTTCGCACTTC
1 GGTGCCCCTATATACACTTCGGTGTCACTGTTTGCACA-ATTG-TGCCCTTGTTCGCACTTC
26783890 GGTGCCC
1 GGTGCCC
26783897 TTGACTGCAC
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
59 1 0.01
60 105 0.95
61 5 0.05
ACGTcount: A:0.12, C:0.30, G:0.21, T:0.36
Consensus pattern (60 bp):
GGTGCCCCTATATACACTTCGGTGTCACTGTTTGCACAATTGTGCCCTTGTTCGCACTTC
Found at i:26787291 original size:56 final size:50
Alignment explanation
Indices: 26787229--26787397 Score: 176
Period size: 50 Copynumber: 3.3 Consensus size: 50
26787219 GATGAGACAT
* *
26787229 CATGTAACACCATGTTTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGTCC
1 CATGTAAGACCATGTTTGGGACATGGCATTGGC---ATCGA-G--ATGAGAGGTCC
** *
26787285 CATGTAAGACCATGCCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCC
1 CATGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGATGAGAGGTCC
* * * * * **
26787335 CATGTAAGACCATGTTTGGGACATAGTATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGATGAGAGGTCC
26787385 CATGTAAGACCAT
1 CATGTAAGACCAT
26787398 ATCTGGGGTA
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
50 64 0.65
52 1 0.01
53 4 0.04
56 29 0.30
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (50 bp):
CATGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGATGAGAGGTCC
Found at i:26787684 original size:20 final size:20
Alignment explanation
Indices: 26787659--26787697 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26787649 TGAGTTATTT
26787659 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26787679 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26787698 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26793226 original size:27 final size:27
Alignment explanation
Indices: 26793205--26793258 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
26793195 TTAGAGATTG
* *
26793205 CTTGAAAGTAGCTTTAGATAGATAGAA
1 CTTGAAAGTAGCTTCAGATAGAGAGAA
*
26793232 CTTGAAAGTAGCTTCAGATAGACAGAA
1 CTTGAAAGTAGCTTCAGATAGAGAGAA
26793259 ATCCTATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (27 bp):
CTTGAAAGTAGCTTCAGATAGAGAGAA
Found at i:26795130 original size:50 final size:50
Alignment explanation
Indices: 26795020--26795130 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 50
26795010 TTATGATAGG
* * **
26795020 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
* * *
26795070 TCCTC-CGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCC-CATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
26795120 TCCCATGTAAG
1 TCCCATGTAAG
26795131 CCCGTTTCTA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.02
50 49 0.96
51 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
Found at i:26795381 original size:20 final size:20
Alignment explanation
Indices: 26795356--26795394 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26795346 TGAGTTATTT
26795356 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26795376 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26795395 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26796664 original size:14 final size:14
Alignment explanation
Indices: 26796645--26796683 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
26796635 TTGTTTCACT
26796645 GGAAATGACTTCCG
1 GGAAATGACTTCCG
* *
26796659 GGAAATGATTTCTG
1 GGAAATGACTTCCG
*
26796673 GAAAATGACTT
1 GGAAATGACTT
26796684 ACTTTTCTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (14 bp):
GGAAATGACTTCCG
Found at i:26797279 original size:18 final size:18
Alignment explanation
Indices: 26797256--26797295 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
26797246 TTATTATTTT
*
26797256 TAAAATTT-ACTATTAAAA
1 TAAAATTTAAATATT-AAA
26797274 TAAAATTTAAATATTAAA
1 TAAAATTTAAATATTAAA
26797292 TAAA
1 TAAA
26797296 TTATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAATTTAAATATTAAA
Found at i:26797302 original size:19 final size:19
Alignment explanation
Indices: 26797266--26797316 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 19
26797256 TAAAATTTAC
*
26797266 TATTAAAATAAAAT-TTAAA
1 TATT-AAATAAATTATTAAA
26797285 TATTAAATAAATTATTAAA
1 TATTAAATAAATTATTAAA
*
26797304 -AAT-AATAAATTAT
1 TATTAAATAAATTAT
26797317 ATTAATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 10 0.34
19 9 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TATTAAATAAATTATTAAA
Found at i:26800022 original size:44 final size:44
Alignment explanation
Indices: 26799972--26800075 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
26799962 TACTCTCTGC
* * *
26799972 AACTTCAGAGAGATAAAATCTAT-GGTTTTAATCCGCTCCACTGT
1 AACTTCAGGGAGATAAAAT-TATCAGCTTTAATCCGCTCCACTGT
** * * *
26800016 AACTTCAGGGAGATAGGATTATCAGCTTTGATCTGCTCTACTGT
1 AACTTCAGGGAGATAAAATTATCAGCTTTAATCCGCTCCACTGT
26800060 AACTTCAGGGAGATAA
1 AACTTCAGGGAGATAA
26800076 GATTTGCCAT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 3 0.06
44 47 0.94
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (44 bp):
AACTTCAGGGAGATAAAATTATCAGCTTTAATCCGCTCCACTGT
Found at i:26800610 original size:45 final size:45
Alignment explanation
Indices: 26800546--26800677 Score: 169
Period size: 45 Copynumber: 3.0 Consensus size: 45
26800536 AAGGCTGGAG
26800546 TTTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTA
1 TTTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTA
* * * * * * * *
26800591 TTTTTGACCTGCTCCGCTGCAGCT-CAGGGAGGCAAG-GCTGGTG
1 TTTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTA
*
26800634 TCTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCT
1 TTTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCT
26800678 GTCTTCATTG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
43 23 0.33
44 22 0.32
45 24 0.35
ACGTcount: A:0.17, C:0.24, G:0.30, T:0.29
Consensus pattern (45 bp):
TTTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTA
Found at i:26800617 original size:88 final size:88
Alignment explanation
Indices: 26800458--26800677 Score: 316
Period size: 88 Copynumber: 2.5 Consensus size: 88
26800448 AAAACTGATA
* * * * *
26800458 TCTTCGATCTGCTTCACTGCCAGTACAAGAAGGCAAGATCTGCTATTTTCAACCTACTCTACTGC
1 TCTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGC
26800523 TACTCAGGGAGACAAGGCTGGAG
66 TACTCAGGGAGACAAGGCTGGAG
* ** * *
26800546 TTTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTATTTTTGACCTGCTCCGCTGC
1 TCTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGC
* *
26800611 -AGCTCAGGGAGGCAAGGCTGGTG
66 TA-CTCAGGGAGACAAGGCTGGAG
26800634 TCTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCT
1 TCTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCT
26800678 GTCTTCATTG
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
87 1 0.01
88 117 0.99
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (88 bp):
TCTTTGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGC
TACTCAGGGAGACAAGGCTGGAG
Found at i:26800668 original size:44 final size:44
Alignment explanation
Indices: 26800535--26800670 Score: 166
Period size: 44 Copynumber: 3.1 Consensus size: 44
26800525 CTCAGGGAGA
*
26800535 CAAGGCTGGAGTTTTTGATCTGCTTCGCTGCCGGTACAGGAAGG
1 CAAGGCTGGTGTTTTTGATCTGCTTCGCTGCCGGTACAGGAAGG
* * * * * * * *
26800579 CAAGATCTGCTATTTTTGACCTGCTCCGCTGCAGCT-CAGGGAGG
1 CAAG-GCTGGTGTTTTTGATCTGCTTCGCTGCCGGTACAGGAAGG
*
26800623 CAAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTACAGGAAGG
1 CAAGGCTGGTGTTTTTGATCTGCTTCGCTGCCGGTACAGGAAGG
26800667 CAAG
1 CAAG
26800671 ATCTGCTGTC
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
43 23 0.32
44 26 0.36
45 23 0.32
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (44 bp):
CAAGGCTGGTGTTTTTGATCTGCTTCGCTGCCGGTACAGGAAGG
Found at i:26801919 original size:12 final size:12
Alignment explanation
Indices: 26801887--26801921 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
26801877 GGCCTCTCCA
*
26801887 TTTTCTTTCTTC
1 TTTTCTTTTTTC
26801899 TTTTCTTTTTTC
1 TTTTCTTTTTTC
26801911 TTTTCTTTTTT
1 TTTTCTTTTTT
26801922 TTTGAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:26810083 original size:50 final size:50
Alignment explanation
Indices: 26810004--26810104 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
26809994 CTACGTACTC
26810004 TACACGCAATTATTCTATTATAAAATATTTAATAATTCAATTCATTAAAT
1 TACACGCAATTATTCTATTATAAAATATTTAATAATTCAATTCATTAAAT
* *
26810054 TACACGCTATTATTCTATTATAAATTATTTAATAATTCAATTCATTAAAT
1 TACACGCAATTATTCTATTATAAAATATTTAATAATTCAATTCATTAAAT
26810104 T
1 T
26810105 CGGTTCAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.45
Consensus pattern (50 bp):
TACACGCAATTATTCTATTATAAAATATTTAATAATTCAATTCATTAAAT
Found at i:26810102 original size:25 final size:25
Alignment explanation
Indices: 26810024--26810104 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
26810014 TATTCTATTA
*
26810024 TAAAATATTTAATAATTCAATTCAT
1 TAAATTATTTAATAATTCAATTCAT
** * *
26810049 TAAATTACACGCT-ATTATTCTATT-A-
1 TAAATT--A-TTTAATAATTCAATTCAT
26810074 TAAATTATTTAATAATTCAATTCAT
1 TAAATTATTTAATAATTCAATTCAT
26810099 TAAATT
1 TAAATT
26810105 CGGTTCAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
22 1 0.02
23 10 0.24
24 1 0.02
25 17 0.41
26 1 0.02
27 10 0.24
28 1 0.02
ACGTcount: A:0.43, C:0.10, G:0.01, T:0.46
Consensus pattern (25 bp):
TAAATTATTTAATAATTCAATTCAT
Found at i:26810234 original size:23 final size:23
Alignment explanation
Indices: 26810180--26810234 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
26810170 TTTTTATTAA
* *
26810180 TTAATAATTTTTATAATATTGTT
1 TTAATAATTTATATAATATTATT
26810203 TT-ATGAATTTAATATAAT-TTATT
1 TTAAT-AATTT-ATATAATATTATT
26810226 TTAATAATT
1 TTAATAATT
26810235 CTAAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
22 2 0.07
23 17 0.63
24 8 0.30
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (23 bp):
TTAATAATTTATATAATATTATT
Found at i:26811059 original size:42 final size:42
Alignment explanation
Indices: 26811007--26811139 Score: 257
Period size: 42 Copynumber: 3.2 Consensus size: 42
26810997 GAAAACACTC
*
26811007 AAATACCGATTTGAATATCAAAGCCAATACTAAATTGGGAAA
1 AAATCCCGATTTGAATATCAAAGCCAATACTAAATTGGGAAA
26811049 AAATCCCGATTTGAATATCAAAGCCAATACTAAATTGGGAAA
1 AAATCCCGATTTGAATATCAAAGCCAATACTAAATTGGGAAA
26811091 AAATCCCGATTTGAATATCAAAGCCAATACTAAATTGGGAAA
1 AAATCCCGATTTGAATATCAAAGCCAATACTAAATTGGGAAA
26811133 AAATCCC
1 AAATCCC
26811140 CTAATTATCA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 90 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (42 bp):
AAATCCCGATTTGAATATCAAAGCCAATACTAAATTGGGAAA
Found at i:26812275 original size:143 final size:143
Alignment explanation
Indices: 26812026--26812310 Score: 482
Period size: 143 Copynumber: 2.0 Consensus size: 143
26812016 CAATTTTGGG
* * *
26812026 CCTAGTCGGAACAGTGGTTTTGGGACTACAAATCCGATGAGAAAAAAATTATTTTTATTATATTT
1 CCTAGTCGGAACAGTGGTTTCGGGACCACAAATCCGATGAGAAAAAAATTATTTTTATTATATAT
26812091 TTATGGTCTACGATTTCACGGAATGATTTTGTGAAAATTTCGTTCAAAAATTTCGACGTTTAGGC
66 TTATGGTCTACGATTTCACGGAATGATTTTGTGAAAATTTCGTTCAAAAATTTCGACGTTTAGGC
26812156 ACTCAATTTAGTT
131 ACTCAATTTAGTT
* *
26812169 CCTAGTCGGAACAGTGGTTTCGGGACCACAAATCCGTTGAGAAAAAAATTATTTTTCTTATATAT
1 CCTAGTCGGAACAGTGGTTTCGGGACCACAAATCCGATGAGAAAAAAATTATTTTTATTATATAT
* *
26812234 TTATGGTCTACGATTTCACGGAATGATTTT-TTAAAATTTTCGTTCAAAAATTTCGACGTTTGGG
66 TTATGGTCTACGATTTCACGGAATGATTTTGTGAAAA-TTTCGTTCAAAAATTTCGACGTTTAGG
*
26812298 CACTTAATTTAGT
130 CACTCAATTTAGT
26812311 CAAAAGGACT
Statistics
Matches: 133, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
142 5 0.04
143 128 0.96
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (143 bp):
CCTAGTCGGAACAGTGGTTTCGGGACCACAAATCCGATGAGAAAAAAATTATTTTTATTATATAT
TTATGGTCTACGATTTCACGGAATGATTTTGTGAAAATTTCGTTCAAAAATTTCGACGTTTAGGC
ACTCAATTTAGTT
Found at i:26813397 original size:24 final size:24
Alignment explanation
Indices: 26813370--26813417 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26813360 AGAGGTCCCA
*
26813370 TGTAAGACAATGTTTGCGACATGG
1 TGTAAGACAATGTCTGCGACATGG
* *
26813394 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACAATGTCTGCGACATGG
26813418 CGTTGGCACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (24 bp):
TGTAAGACAATGTCTGCGACATGG
Found at i:26813472 original size:50 final size:50
Alignment explanation
Indices: 26813394--26813575 Score: 238
Period size: 50 Copynumber: 3.6 Consensus size: 50
26813384 TGCGACATGG
* *
26813394 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * *
26813444 TGCAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * * **
26813494 CGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* *
26813544 TGTAAGACCATATCTGGGATATGGCATTGGCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA
26813576 GTACAAAANN
Statistics
Matches: 114, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 114 1.00
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
Found at i:26813568 original size:100 final size:100
Alignment explanation
Indices: 26813395--26813575 Score: 263
Period size: 100 Copynumber: 1.8 Consensus size: 100
26813385 GCGACATGGT
* * ** *
26813395 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGCAAGACCATGTCTG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGCAAGACCATATCTG
*
26813460 GGACATGGCGTTGGCACTGAGATGAGAGGTCCCCC
66 GGACATGGCATTGGCACTGAGATGAGAGGTCCCCC
* * * *
26813495 GTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAACTCCCATGTAAGACCATATCTG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGCAAGACCATATCTG
*
26813560 GGATATGGCATTGGCA
66 GGACATGGCATTGGCA
26813576 GTACAAAANN
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
100 70 1.00
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (100 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGCAAGACCATATCTG
GGACATGGCATTGGCACTGAGATGAGAGGTCCCCC
Found at i:26817405 original size:28 final size:28
Alignment explanation
Indices: 26817370--26817425 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26817360 GATTGATCCG
26817370 ATGGGTACTTTTACTCTAAGAATTTGAT
1 ATGGGTACTTTTACTCTAAGAATTTGAT
26817398 ATGGGTACTTTTACTCTAAGAATTTGAT
1 ATGGGTACTTTTACTCTAAGAATTTGAT
26817426 CTAGAAATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (28 bp):
ATGGGTACTTTTACTCTAAGAATTTGAT
Done.