Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 96 of 131
Found at i:32051827 original size:42 final size:42
Alignment explanation
Indices: 32051740--32051827 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
32051730 GTCCCACCTC
* * **
32051740 GTGTCTCCACCCGTGTAACTCACTGACTTGAGACACACGGTT
1 GTGTCTCAACCCGTGTAACTCACTGACTTAAGACACACGACT
*
32051782 GTGTCTCAACCCGTGTAACTCACT-ATCTTAAGACATACGACT
1 GTGTCTCAACCCGTGTAACTCACTGA-CTTAAGACACACGACT
32051824 GTGT
1 GTGT
32051828 GGCCAAGGCG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.03
42 39 0.98
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (42 bp):
GTGTCTCAACCCGTGTAACTCACTGACTTAAGACACACGACT
Found at i:32053553 original size:36 final size:36
Alignment explanation
Indices: 32053506--32053582 Score: 145
Period size: 36 Copynumber: 2.1 Consensus size: 36
32053496 TAAATGTGAA
32053506 GTTAATAGATAGTGATGGCAACATCCACTAAGCATG
1 GTTAATAGATAGTGATGGCAACATCCACTAAGCATG
32053542 GTTAATAGATAGTGATGGCAACATCCACTAAGCATG
1 GTTAATAGATAGTGATGGCAACATCCACTAAGCATG
*
32053578 ATTAA
1 GTTAA
32053583 GGTTAAATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.26
Consensus pattern (36 bp):
GTTAATAGATAGTGATGGCAACATCCACTAAGCATG
Found at i:32058044 original size:13 final size:13
Alignment explanation
Indices: 32058023--32058052 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32058013 TGAGTTCATA
*
32058023 AATATTATTAATT
1 AATACTATTAATT
32058036 AATACTATTAATT
1 AATACTATTAATT
32058049 AATA
1 AATA
32058053 TTTATGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
AATACTATTAATT
Found at i:32058968 original size:24 final size:24
Alignment explanation
Indices: 32058931--32058976 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
32058921 TCAAAACAAA
** *
32058931 GAAAAGGTGGAAAAGGTTACCAAT
1 GAAAAGGTCAAAAAGGATACCAAT
32058955 GAAAAGGTCAAAAAGGATACCA
1 GAAAAGGTCAAAAAGGATACCA
32058977 TTATATCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.26, T:0.13
Consensus pattern (24 bp):
GAAAAGGTCAAAAAGGATACCAAT
Found at i:32063707 original size:30 final size:30
Alignment explanation
Indices: 32063652--32063719 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
32063642 TACATATTAA
*
32063652 CATATTCATACCCTGTTCCATTCACATTTG
1 CATATTCATACCCTGTTCCAATCACATTTG
32063682 CATA-TCATACCCTGTAAT-CAATCACATTTG
1 CATATTCATACCCTGT--TCCAATCACATTTG
*
32063712 CATTTTCA
1 CATATTCA
32063720 GATCCTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 11 0.33
30 18 0.55
31 4 0.12
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.38
Consensus pattern (30 bp):
CATATTCATACCCTGTTCCAATCACATTTG
Found at i:32067036 original size:22 final size:21
Alignment explanation
Indices: 32066985--32067047 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
32066975 TCATGCAGAT
*
32066985 TTTTAATTAAATTGTTATGCA
1 TTTTAATTAAATTGTAATGCA
*
32067006 TTTGGAATTATAATTGTAATGC-
1 TTT-TAATTA-AATTGTAATGCA
*
32067028 TGTTTAATTGAAATTTTAAT
1 T-TTTAATT-AAATTGTAAT
32067048 TGTTTATGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
21 3 0.09
22 18 0.53
23 13 0.38
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (21 bp):
TTTTAATTAAATTGTAATGCA
Found at i:32070318 original size:2 final size:2
Alignment explanation
Indices: 32070311--32070348 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
32070301 ACACCCATCA
32070311 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
32070349 TATTTACTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:32085033 original size:18 final size:18
Alignment explanation
Indices: 32085010--32085050 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
32085000 GTTTGAGTGC
32085010 TTAATTTGAGAAAATGGT
1 TTAATTTGAGAAAATGGT
32085028 TTAATTTGAGAAAATGGT
1 TTAATTTGAGAAAATGGT
32085046 TTAAT
1 TTAAT
32085051 CGTGTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (18 bp):
TTAATTTGAGAAAATGGT
Found at i:32086321 original size:32 final size:32
Alignment explanation
Indices: 32086271--32086350 Score: 126
Period size: 32 Copynumber: 2.5 Consensus size: 32
32086261 TATCATGAAT
*
32086271 TACATATAT-TTATATGCATGTGGCTCGAACA
1 TACATATATACTATATGCATGTGGCTCGAACA
32086302 TACATATATACTATATGCATGTGGCTCGAACA
1 TACATATATACTATATGCATGTGGCTCGAACA
*
32086334 TAGATATATACATATAT
1 TACATATATAC-TATAT
32086351 TCAAGTTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 9 0.20
32 31 0.69
33 5 0.11
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (32 bp):
TACATATATACTATATGCATGTGGCTCGAACA
Found at i:32086651 original size:41 final size:41
Alignment explanation
Indices: 32086601--32086703 Score: 179
Period size: 41 Copynumber: 2.5 Consensus size: 41
32086591 AAGCTTGTGC
*
32086601 CTAGTAGGCTTAATGCCGGTGAAATATTTCAGACTATACGT
1 CTAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATACGT
*
32086642 CTAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGT
1 CTAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATACGT
*
32086683 CTAGCAGGCTTAATGTCGGTG
1 CTAGCAGGCTTAATGCCGGTG
32086704 TACTAGATCA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATACGT
Found at i:32089907 original size:19 final size:18
Alignment explanation
Indices: 32089869--32089907 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
32089859 GAATGTTTCC
* *
32089869 CATTTCTTTTTTTCTTTT
1 CATTTCTTTATTTCTATT
32089887 CATTTCGTTTATTTCTATT
1 CATTTC-TTTATTTCTATT
32089906 CA
1 CA
32089908 AACACGCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.67
Consensus pattern (18 bp):
CATTTCTTTATTTCTATT
Found at i:32090123 original size:12 final size:12
Alignment explanation
Indices: 32090106--32090132 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32090096 GTTGTGATAT
32090106 ATAAAGTAATAA
1 ATAAAGTAATAA
32090118 ATAAAGTAATAA
1 ATAAAGTAATAA
32090130 ATA
1 ATA
32090133 CTTAATCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (12 bp):
ATAAAGTAATAA
Found at i:32090614 original size:20 final size:18
Alignment explanation
Indices: 32090567--32090615 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
32090557 AAGATAAAAC
32090567 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
32090584 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
32090604 ATTAAATTAATA
1 ATTAAATTAATA
32090616 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:32098346 original size:29 final size:30
Alignment explanation
Indices: 32098287--32098350 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
32098277 ATAACTGCTG
**
32098287 AAATCTGCCAAATAACGAATAAATGTGATA
1 AAATCTGCCAAATAACGAATAAATGAAATA
* * *
32098317 AAATC-GCTAAATAATGAATAAGTGAAATA
1 AAATCTGCCAAATAACGAATAAATGAAATA
32098346 AAATC
1 AAATC
32098351 ACCAAATCCC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.53, C:0.11, G:0.12, T:0.23
Consensus pattern (30 bp):
AAATCTGCCAAATAACGAATAAATGAAATA
Found at i:32098357 original size:29 final size:29
Alignment explanation
Indices: 32098294--32098357 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
32098284 CTGAAATCTG
** *
32098294 CCAAATAACGAATAAATGTGATAAAATCG
1 CCAAATAACGAATAAATGAAATAAAATCA
* * *
32098323 CTAAATAATGAATAAGTGAAATAAAATCA
1 CCAAATAACGAATAAATGAAATAAAATCA
32098352 CCAAAT
1 CCAAAT
32098358 CCCTTCAAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.55, C:0.12, G:0.11, T:0.22
Consensus pattern (29 bp):
CCAAATAACGAATAAATGAAATAAAATCA
Found at i:32100895 original size:24 final size:24
Alignment explanation
Indices: 32100859--32100929 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
32100849 TTTTTAAGCA
*
32100859 GGGTATTCCGTAAGTGCCTTTGTG
1 GGGTATTCTGTAAGTGCCTTTGTG
*
32100883 GGGTATTCTGTAAGTGCCTTTTTG
1 GGGTATTCTGTAAGTGCCTTTGTG
* *
32100907 GCGTATTCTGTAAGTACCTTTGT
1 GGGTATTCTGTAAGTGCCTTTGT
32100930 TACGTATTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.14, C:0.15, G:0.28, T:0.42
Consensus pattern (24 bp):
GGGTATTCTGTAAGTGCCTTTGTG
Found at i:32100935 original size:24 final size:24
Alignment explanation
Indices: 32100861--32100946 Score: 102
Period size: 24 Copynumber: 3.6 Consensus size: 24
32100851 TTTAAGCAGG
* * *
32100861 GTATTCCGTAAGTGCCTTTGTGGG
1 GTATTCTGTAAGTGCCTTTGTTGC
32100885 GTATTCTGTAAGTGCCTTT-TTGGC
1 GTATTCTGTAAGTGCCTTTGTT-GC
* *
32100909 GTATTCTGTAAGTACCTTTGTTAC
1 GTATTCTGTAAGTGCCTTTGTTGC
*
32100933 GTATTCTATAAGTG
1 GTATTCTGTAAGTG
32100947 TTTTGTAGTA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
23 1 0.02
24 50 0.94
25 2 0.04
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.43
Consensus pattern (24 bp):
GTATTCTGTAAGTGCCTTTGTTGC
Found at i:32108058 original size:15 final size:16
Alignment explanation
Indices: 32108040--32108069 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32108030 TTGTGCCATG
32108040 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
32108055 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
32108070 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:32114484 original size:132 final size:132
Alignment explanation
Indices: 32114247--32114510 Score: 519
Period size: 132 Copynumber: 2.0 Consensus size: 132
32114237 CTTGATGGCT
32114247 ATGGACATTCTTTTGATTTCTAATTGAAAATGGTGATTTTTTTTTGTGGAAGGACCAAATTATAA
1 ATGGACATTCTTTTGATTTCTAATTGAAAATGGTGATTTTTTTTTGTGGAAGGACCAAATTATAA
*
32114312 AGAAAGCAAAAATTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGGGTT
66 AGAAAGCAAAAATTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGGATT
32114377 GG
131 GG
32114379 ATGGACATTCTTTTGATTTCTAATTGAAAATGGTGATTTTTTTTTGTGGAAGGACCAAATTATAA
1 ATGGACATTCTTTTGATTTCTAATTGAAAATGGTGATTTTTTTTTGTGGAAGGACCAAATTATAA
32114444 AGAAAGCAAAAATTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGGATT
66 AGAAAGCAAAAATTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGGATT
32114509 GG
131 GG
32114511 TTTCTTTTCA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 131 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (132 bp):
ATGGACATTCTTTTGATTTCTAATTGAAAATGGTGATTTTTTTTTGTGGAAGGACCAAATTATAA
AGAAAGCAAAAATTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGGATT
GG
Found at i:32117602 original size:14 final size:14
Alignment explanation
Indices: 32117583--32117609 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32117573 GTGGGTTGGA
32117583 GAGAGGGAGGGAGG
1 GAGAGGGAGGGAGG
32117597 GAGAGGGAGGGAG
1 GAGAGGGAGGGAG
32117610 AGCTTACTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (14 bp):
GAGAGGGAGGGAGG
Found at i:32119261 original size:18 final size:18
Alignment explanation
Indices: 32119240--32119282 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32119230 TCTTCCCCCC
*
32119240 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
*
32119258 TTCTTTCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
32119276 TGCTTTC
1 TTCTTTC
32119283 TTTTTATGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:32129975 original size:31 final size:31
Alignment explanation
Indices: 32129914--32129976 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
32129904 GTAACTATAA
* * *
32129914 ATATGAAATTTTTATTGTGGTTTATATGTAT
1 ATATGAAACTTTAATTGTGATTTATATGTAT
*
32129945 ATATGAAACTTTAATTTTGATTTA-ATTGTAT
1 ATATGAAACTTTAATTGTGATTTATA-TGTAT
32129976 A
1 A
32129977 CATTTCAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (31 bp):
ATATGAAACTTTAATTGTGATTTATATGTAT
Found at i:32130018 original size:19 final size:19
Alignment explanation
Indices: 32129994--32130030 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32129984 AAGATAAATA
32129994 TATAAATATATT-TTTATAT
1 TATAAATA-ATTATTTATAT
32130013 TATAAATAATTATTTATA
1 TATAAATAATTATTTATA
32130031 GTGCAGCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATAAATAATTATTTATAT
Found at i:32134772 original size:22 final size:21
Alignment explanation
Indices: 32134729--32134794 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
32134719 TTAAATCGAG
* *
32134729 ATTAAAATTTTAAAATTCAAAA
1 ATTAAAATATTAAAA-TAAAAA
*
32134751 ATTACAATAATTAAAATAAAAA
1 ATTAAAAT-ATTAAAATAAAAA
* * *
32134773 CTTAAAATATAAAAAAAAAAA
1 ATTAAAATATTAAAATAAAAA
32134794 A
1 A
32134795 CTGATCGAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 11 0.31
22 18 0.51
23 6 0.17
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (21 bp):
ATTAAAATATTAAAATAAAAA
Found at i:32140891 original size:51 final size:51
Alignment explanation
Indices: 32140758--32140902 Score: 204
Period size: 50 Copynumber: 2.9 Consensus size: 51
32140748 AGTGAAAGTG
32140758 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
* * * *
32140809 A-GCTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATGGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
* * *
32140858 AATGGTCACATGTGTAGTACTATGTGTAGGCTACTATGTGAACCG
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
32140903 AACATCATTG
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
49 6 0.07
50 39 0.48
51 36 0.44
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
Found at i:32140955 original size:45 final size:45
Alignment explanation
Indices: 32140904--32140990 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
32140894 TGTGAACCGA
* *
32140904 ACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCCACTGG
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACTGG
*
32140949 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCAC
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCAC
32140991 CGAGTATCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACTGG
Found at i:32144336 original size:82 final size:82
Alignment explanation
Indices: 32144199--32144362 Score: 312
Period size: 82 Copynumber: 2.0 Consensus size: 82
32144189 ATATAACACC
32144199 ATCAAACTCACAAGTTAGTATACTTGTTCATGATACATATGAAATCAACCATATATAAACATAAG
1 ATCAAACTCACAAGTTAGTATACTTGTTCATGATACATATGAAATCAACCATATATAAACATAAG
32144264 ATTTAATTTATCATCAT
66 ATTTAATTTATCATCAT
32144281 ATCAAACTCACAAGTTAGTATACTTGTTTCATGATAC-TATGAAATCAACCATATATAAACATAA
1 ATCAAACTCACAAGTTAGTATACTTG-TTCATGATACATATGAAATCAACCATATATAAACATAA
32144345 GATTTAATTTATCATCAT
65 GATTTAATTTATCATCAT
32144363 TACCATTTGT
Statistics
Matches: 81, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
82 71 0.88
83 10 0.12
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (82 bp):
ATCAAACTCACAAGTTAGTATACTTGTTCATGATACATATGAAATCAACCATATATAAACATAAG
ATTTAATTTATCATCAT
Found at i:32150195 original size:38 final size:38
Alignment explanation
Indices: 32150153--32150251 Score: 110
Period size: 38 Copynumber: 2.6 Consensus size: 38
32150143 CGAATATAAT
* * *
32150153 AATTATAATTACCATAATTATAATAATGTTTGA-CAAAA
1 AATTATAATTACAATAATTATAATAATATTCGATC-AAA
* * * **
32150191 AATTACAATTATAGTAATTATAATAATATTCGATCCTA
1 AATTATAATTACAATAATTATAATAATATTCGATCAAA
32150229 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
32150252 CAAGGATTTC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
38 48 0.98
39 1 0.02
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.38
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATATTCGATCAAA
Found at i:32154877 original size:16 final size:16
Alignment explanation
Indices: 32154856--32154887 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32154846 GTGCCATAGC
32154856 ATCTTTCAACTATGGT
1 ATCTTTCAACTATGGT
32154872 ATCTTTCAACTATGGT
1 ATCTTTCAACTATGGT
32154888 CTTACACGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (16 bp):
ATCTTTCAACTATGGT
Found at i:32155098 original size:45 final size:45
Alignment explanation
Indices: 32154960--32155178 Score: 186
Period size: 45 Copynumber: 4.9 Consensus size: 45
32154950 AGACTACTAG
* * * * *
32154960 GATGTCATAGTGTCTTTCAGCTATGGTCTTAGTCATGTTTACCAT
1 GATGTCATAGCGTCTTTCAACTATGGTCTTACTCATTTTTATCAT
* * * * *
32155005 AATGTCATAGCATCTTTCAACCATGGTCTTATTCATTTATATCAT
1 GATGTCATAGCGTCTTTCAACTATGGTCTTACTCATTTTTATCAT
* * **
32155050 GATGCCATAGCGTCTTTCAACTATGGTTTTACTCATTTTTATGGT
1 GATGTCATAGCGTCTTTCAACTATGGTCTTACTCATTTTTATCAT
* * * ** * * *
32155095 GATGTCATAACATCTTTTAGTTACGGTCTTACTTATCTTTATCAT
1 GATGTCATAGCGTCTTTCAACTATGGTCTTACTCATTTTTATCAT
* ** * * *
32155140 GATGCCATAGAATCTTTTAGCTATGTTCTTACTCATTTT
1 GATGTCATAGCGTCTTTCAACTATGGTCTTACTCATTTT
32155179 ATGCGTATAG
Statistics
Matches: 136, Mismatches: 38, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.44
Consensus pattern (45 bp):
GATGTCATAGCGTCTTTCAACTATGGTCTTACTCATTTTTATCAT
Found at i:32156420 original size:34 final size:34
Alignment explanation
Indices: 32156377--32156444 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
32156367 CACTTGACGA
* *
32156377 ATGTGAATTCTTATTTATTTGAGGGTATATAACC
1 ATGTGAATTCTTATTTATTGGAGAGTATATAACC
* *
32156411 ATGTGAATTCTTGTTTATTGGCGAGTATATAACC
1 ATGTGAATTCTTATTTATTGGAGAGTATATAACC
32156445 CTTTCATCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (34 bp):
ATGTGAATTCTTATTTATTGGAGAGTATATAACC
Found at i:32157517 original size:45 final size:45
Alignment explanation
Indices: 32157433--32157635 Score: 205
Period size: 45 Copynumber: 4.5 Consensus size: 45
32157423 TATCCTCTTG
* * * * **
32157433 TTTCAGCTATGGTTTTAGTC-TTGT-TACCATGATGTCATAGTATC
1 TTTCAGCTATGGTCTTACTCATT-TATATCATGATGCCATAACATC
* * * *
32157477 TTTCAGCCATGGTCTTACTTATTTATATCATGATGCCATAGCGTC
1 TTTCAGCTATGGTCTTACTCATTTATATCATGATGCCATAACATC
* * **
32157522 TTTCGGCTATGGTTTTACTCATCTT-TATGGTGATGCCATAACATC
1 TTTCAGCTATGGTCTTACTCAT-TTATATCATGATGCCATAACATC
* * * *
32157567 TTTCAGTTATGGTCTTTCTCATCTATATCATGATGTCATAACATC
1 TTTCAGCTATGGTCTTACTCATTTATATCATGATGCCATAACATC
32157612 TTTCAGCTATGGTCTTACTCATTT
1 TTTCAGCTATGGTCTTACTCATTT
32157636 TAGGCGTATA
Statistics
Matches: 128, Mismatches: 27, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
44 18 0.14
45 108 0.84
46 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.15, T:0.44
Consensus pattern (45 bp):
TTTCAGCTATGGTCTTACTCATTTATATCATGATGCCATAACATC
Found at i:32157570 original size:90 final size:89
Alignment explanation
Indices: 32157474--32157637 Score: 229
Period size: 90 Copynumber: 1.8 Consensus size: 89
32157464 ATGTCATAGT
* * * * * *
32157474 ATCTTTCAGCCATGGTCTTACTTATTTATATCATGATGCCATAGCGTCTTTCGGCTATGGTTTTA
1 ATCTTTCAGCCATGGTCTTACTCATCTATATCATGATGCCATAACATCTTTCAGCTATGGTCTTA
32157539 CTCATCTTTATGGTGATGCCATAAC
66 CTCAT-TTTATGGTGATGCCATAAC
** * *
32157564 ATCTTTCAGTTATGGTCTTTCTCATCTATATCATGATGTCATAACATCTTTCAGCTATGGTCTTA
1 ATCTTTCAGCCATGGTCTTACTCATCTATATCATGATGCCATAACATCTTTCAGCTATGGTCTTA
32157629 CTCATTTTA
66 CTCATTTTA
32157638 GGCGTATAGC
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
89 4 0.06
90 60 0.94
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (89 bp):
ATCTTTCAGCCATGGTCTTACTCATCTATATCATGATGCCATAACATCTTTCAGCTATGGTCTTA
CTCATTTTATGGTGATGCCATAAC
Found at i:32160161 original size:35 final size:36
Alignment explanation
Indices: 32160122--32160189 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
32160112 TTATAATCAC
* *
32160122 TGTCACAAGGTATGGA-AACATACCCACATATTTAT
1 TGTCACAAGGCATGAATAACATACCCACATATTTAT
*
32160157 TGTCACATGGCATGAATAACATACCCACATATT
1 TGTCACAAGGCATGAATAACATACCCACATATT
32160190 CTCTTTCACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 13 0.45
36 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (36 bp):
TGTCACAAGGCATGAATAACATACCCACATATTTAT
Found at i:32161883 original size:10 final size:9
Alignment explanation
Indices: 32161870--32161940 Score: 54
Period size: 9 Copynumber: 7.4 Consensus size: 9
32161860 TGCATGAAAA
32161870 CTTTTCCTTT
1 CTTTT-CTTT
*
32161880 CTTTTCTCT
1 CTTTTCTTT
32161889 CTTTTTCTTTT
1 C-TTTTC-TTT
32161900 CTTTTCTTT
1 CTTTTCTTT
32161909 C-TTTCTTCCT
1 CTTTTCTT--T
**
32161919 CCCTTCTTT
1 CTTTTCTTT
*
32161928 CTTTCCTTT
1 CTTTTCTTT
32161937 CTTT
1 CTTT
32161941 CCCTTTTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
8 6 0.12
9 19 0.38
10 17 0.34
11 8 0.16
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (9 bp):
CTTTTCTTT
Found at i:32161900 original size:20 final size:20
Alignment explanation
Indices: 32161871--32161918 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32161861 GCATGAAAAC
32161871 TTTTCCTTTCTTTTCTCTCT
1 TTTTCCTTTCTTTTCTCTCT
* *
32161891 TTTTCTTTTCTTTTCTTTCT
1 TTTTCCTTTCTTTTCTCTCT
32161911 TTCTTCCT
1 TT-TTCCT
32161919 CCCTTCTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTCCTTTCTTTTCTCTCT
Found at i:32162770 original size:15 final size:15
Alignment explanation
Indices: 32162750--32162784 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
32162740 ACTTTTAGAC
32162750 TATAAAAAATACATA
1 TATAAAAAATACATA
*
32162765 TATAAAATATACATA
1 TATAAAAAATACATA
32162780 TATAA
1 TATAA
32162785 TTTTTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (15 bp):
TATAAAAAATACATA
Found at i:32166336 original size:118 final size:125
Alignment explanation
Indices: 32166093--32166340 Score: 321
Period size: 129 Copynumber: 2.0 Consensus size: 125
32166083 AGGCTTCATC
* * ** *
32166093 TGTTGCATGACTTTAGTGTTGGGGGAAATGAGGTGAGAATGAATTCCCAATACACTGAAGCCATT
1 TGTTGCATGACTCTAGTGTTGGGAGAAATGAGAAGAGAATGAATTCCCAAAACACTGAAGCCATT
*
32166158 CACAGAACAGGCACTTAGACTGTTGTTTTCTATTTTAATTTAACTGTTTATATTTGACTTGAATT
66 CACAGAACAGGCA--TAGACTCTTGTTTTCTA--TT-ATTTAACTGTTTATATTTGACTTGAATT
32166223 TGTTGCATGACTCTAGTGTTGGGAG-AATGAGAAGAGAATGAATTCCCAAAACACTGAAGCCATT
1 TGTTGCATGACTCTAGTGTTGGGAGAAATGAGAAGAGAATGAATTCCCAAAACACTGAAGCCATT
** *
32166287 CAGTGAACA-G-A-AGACTCTTGTTTT-TA-T-TTTAACTGTTTATATTTTACTTGAATT
66 CACAGAACAGGCATAGACTCTTGTTTTCTATTATTTAACTGTTTATATTTGACTTGAATT
32166341 GAGGACTCCT
Statistics
Matches: 109, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
118 26 0.24
120 1 0.01
123 2 0.02
124 12 0.11
127 1 0.01
128 1 0.01
129 43 0.39
130 23 0.21
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (125 bp):
TGTTGCATGACTCTAGTGTTGGGAGAAATGAGAAGAGAATGAATTCCCAAAACACTGAAGCCATT
CACAGAACAGGCATAGACTCTTGTTTTCTATTATTTAACTGTTTATATTTGACTTGAATT
Found at i:32167862 original size:45 final size:44
Alignment explanation
Indices: 32167813--32167921 Score: 157
Period size: 45 Copynumber: 2.5 Consensus size: 44
32167803 GCCAATATGT
*
32167813 TCTTCTCAGTTTTGCAAACATCTATGTGTTTT-CTTGTTCTTATTA
1 TCTTCTCAGTTTTGCAAACATCTACGTGTTTTCCTT-TTCTTA-TA
* **
32167858 TCTTCTCAGTTCTGCAAGTATCTACGTGTTTTCCTTTTCTTATA
1 TCTTCTCAGTTTTGCAAACATCTACGTGTTTTCCTTTTCTTATA
32167902 TCTTCTCAGTTTTGCAAACA
1 TCTTCTCAGTTTTGCAAACA
32167922 CATTATCTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
44 19 0.34
45 34 0.61
46 3 0.05
ACGTcount: A:0.18, C:0.21, G:0.11, T:0.50
Consensus pattern (44 bp):
TCTTCTCAGTTTTGCAAACATCTACGTGTTTTCCTTTTCTTATA
Found at i:32170828 original size:61 final size:61
Alignment explanation
Indices: 32170720--32170837 Score: 148
Period size: 61 Copynumber: 1.9 Consensus size: 61
32170710 TTAATTACCG
* * ** *
32170720 TTTGATTTTATATCTTTATTTTGACAAAAGAAATTGATTTAAATAACCAAGTATTTTCTTC
1 TTTGATTTTATATCTTTATATGGACAAAAGAAACAGATGTAAATAACCAAGTATTTTCTTC
* * *
32170781 TTTGATTTTATATCTTTGTCATGGA-AAAAGAAACAGATGTAAGTAACCGAGTATTTT
1 TTTGATTTTATATCTTTAT-ATGGACAAAAGAAACAGATGTAAATAACCAAGTATTTT
32170838 AACAGATTCA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
61 45 0.94
62 3 0.06
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (61 bp):
TTTGATTTTATATCTTTATATGGACAAAAGAAACAGATGTAAATAACCAAGTATTTTCTTC
Found at i:32176388 original size:1 final size:1
Alignment explanation
Indices: 32176382--32176448 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
32176372 CGACCTATCC
* * * * * * * * *
32176382 TTTTTTTTTCTTTTTTTCTTTTTCTTTTTTCTTTCTTCTTTCTTTTTTTTCTTTTTTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
32176447 TT
1 TT
32176449 GCTCCTTCTT
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:32176448 original size:7 final size:7
Alignment explanation
Indices: 32176385--32176438 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
32176375 CCTATCCTTT
32176385 TTTTTTC
1 TTTTTTC
32176392 TTTTTT-
1 TTTTTTC
32176398 TCTTTTTC
1 T-TTTTTC
32176406 TTTTTTC
1 TTTTTTC
*
32176413 TTTCTTC
1 TTTTTTC
*
32176420 TTTCTT-
1 TTTTTTC
32176426 TTTTTTC
1 TTTTTTC
32176433 TTTTTT
1 TTTTTT
32176439 TTTCTTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
6 6 0.14
7 35 0.83
8 1 0.02
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:32176448 original size:8 final size:8
Alignment explanation
Indices: 32176384--32176439 Score: 62
Period size: 8 Copynumber: 6.9 Consensus size: 8
32176374 ACCTATCCTT
32176384 TTTTTTTC
1 TTTTTTTC
32176392 TTTTTTTC
1 TTTTTTTC
32176400 TTTTTCTT-
1 TTTTT-TTC
32176408 TTTTCTTTC
1 TTTT-TTTC
*
32176417 -TTCTTTC
1 TTTTTTTC
32176424 TTTTTTTTC
1 -TTTTTTTC
32176433 TTTTTTT
1 TTTTTTT
32176440 TTCTTTTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
7 4 0.10
8 28 0.68
9 9 0.22
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTTTC
Found at i:32176457 original size:37 final size:38
Alignment explanation
Indices: 32176381--32176458 Score: 99
Period size: 37 Copynumber: 2.1 Consensus size: 38
32176371 CCGACCTATC
* *
32176381 CTTTTTTTTTCTTTTTTTCTTTTTCTTTTTTCTTTCTT
1 CTTTTTTTTTCTTCTTTTCTTTTTCTTTTTTCTTCCTT
32176419 CTTTCTTTTTT-TTCTTTT-TTTTTCTTTTTTGC-TCCTT
1 CTTT-TTTTTTCTTCTTTTCTTTTTCTTTTTT-CTTCCTT
32176456 CTT
1 CTT
32176459 CTCAAGCCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
37 19 0.53
38 11 0.31
39 6 0.17
ACGTcount: A:0.00, C:0.18, G:0.01, T:0.81
Consensus pattern (38 bp):
CTTTTTTTTTCTTCTTTTCTTTTTCTTTTTTCTTCCTT
Found at i:32176458 original size:33 final size:33
Alignment explanation
Indices: 32176392--32176458 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
32176382 TTTTTTTTTC
*
32176392 TTTTTTTCTTTTTCTTTTTTCTTTCTTCTTTCT
1 TTTTTTTCTTTTTCTTTTTTCTTTCTTCCTTCT
*
32176425 TTTTTTTCTTTTT-TTTTCTTTTTTGC-TCCTTCT
1 TTTTTTTCTTTTTCTTTT-TTCTTT-CTTCCTTCT
32176458 T
1 T
32176459 CTCAAGCCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 4 0.13
33 25 0.83
34 1 0.03
ACGTcount: A:0.00, C:0.18, G:0.01, T:0.81
Consensus pattern (33 bp):
TTTTTTTCTTTTTCTTTTTTCTTTCTTCCTTCT
Found at i:32176593 original size:24 final size:24
Alignment explanation
Indices: 32176561--32176615 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
32176551 CATATTTTTT
32176561 TTTTCTTTTCTTCTCTTCTTTCTCTC
1 TTTT-TTTTCTTCTCTTCTTTCTC-C
*
32176587 TTTTTTTTCTCCT-TTCTTTCTCC
1 TTTTTTTTCTTCTCTTCTTTCTCC
32176610 TTTTTT
1 TTTTTT
32176616 CCTTCTCGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 7 0.25
24 9 0.32
25 8 0.29
26 4 0.14
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTTTTCTTCTCTTCTTTCTCC
Found at i:32176603 original size:20 final size:21
Alignment explanation
Indices: 32176564--32176603 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
32176554 ATTTTTTTTT
*
32176564 TCTTTTCTTCTCTTCTTTCTC
1 TCTTTTCTTCTCTCCTTTCTC
*
32176585 TCTTTT-TTTTCTCCTTTCT
1 TCTTTTCTTCTCTCCTTTCT
32176604 TTCTCCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (21 bp):
TCTTTTCTTCTCTCCTTTCTC
Found at i:32177168 original size:29 final size:29
Alignment explanation
Indices: 32177124--32177232 Score: 121
Period size: 30 Copynumber: 3.7 Consensus size: 29
32177114 AAAACTTTTA
* * *
32177124 GGGTTAAAGTGCAATTTT-AGGAAGTTAG
1 GGGTTAAAATGTAATTTTAAGAAAGTTAG
* *
32177152 GGGATTAAAATGTAATTTTAAAAAAGTTTAA
1 GGG-TTAAAATGTAATTTTAAGAAAG-TTAG
32177183 GGGTTAAAATGTAATTTTAAGAAAGTTAG
1 GGGTTAAAATGTAATTTTAAGAAAGTTAG
* *
32177212 GGGTCAAAATTTAAATTTTAA
1 GGGTTAAAATGT-AATTTTAA
32177233 ATTTTGTATT
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 3 0.04
29 26 0.38
30 33 0.49
31 6 0.09
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.35
Consensus pattern (29 bp):
GGGTTAAAATGTAATTTTAAGAAAGTTAG
Found at i:32177186 original size:59 final size:60
Alignment explanation
Indices: 32177114--32177233 Score: 154
Period size: 59 Copynumber: 2.0 Consensus size: 60
32177104 CAAAGGGTGT
* * * *
32177114 AAAACTTTTAGGGTTAAAGTGCAATTTT-AGGAAGTTAGGGGATTAAAATGT-AATTTTAA
1 AAAACTTTAAGGGTTAAAATGCAATTTTAAGAAAGTTAGGGG-TCAAAATGTAAATTTTAA
* * *
32177173 AAAAGTTTAAGGGTTAAAATGTAATTTTAAGAAAGTTAGGGGTCAAAATTTAAATTTTAA
1 AAAACTTTAAGGGTTAAAATGCAATTTTAAGAAAGTTAGGGGTCAAAATGTAAATTTTAA
32177233 A
1 A
32177234 TTTTGTATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 31 0.60
60 21 0.40
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.35
Consensus pattern (60 bp):
AAAACTTTAAGGGTTAAAATGCAATTTTAAGAAAGTTAGGGGTCAAAATGTAAATTTTAA
Found at i:32177632 original size:75 final size:75
Alignment explanation
Indices: 32177510--32178073 Score: 544
Period size: 75 Copynumber: 7.3 Consensus size: 75
32177500 CCAAAAAAAA
* ** * * * *
32177510 ATTTTTGAAAAA-GGAACTTGAAAACACCTCGGCGTGCAACCCGAGGCTCAACTCACCTCTCGGA
1 ATTTTTGAAAAACAGAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAGA
32177574 TTATGAGTTG
66 TTATGAGTTG
* *
32177584 ATTTTTGAAAAACAGAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCCCCTCTCGGA
1 ATTTTTGAAAAACAGAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAGA
*
32177649 TTATGAGTTA
66 TTATGAGTTG
*
32177659 ATTTTTGAAAAACAG-AAATTAAAAGTACCTCAGCGTGCGACCCGAGGCTCAAAC-CACCTCTCA
1 ATTTTTGAAAAACAGAAAATGAAAA-TACCTCAGCGTGCGACCCGAGGCTC-AACTCACCTCTCA
32177722 GATTATGAGTTG
64 GATTATGAGTTG
** * *
32177734 ATTTTTGAAAAACAGAACTTGAAAATACCTCAGCGTGCTACCCGAGGCTCAACTCACCTCTCGGA
1 ATTTTTGAAAAACAGAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAGA
*
32177799 TTATGAGTTA
66 TTATGAGTTG
* * *
32177809 ATTTTTGAAAAACAG-AAATTAAAAGTACCTCAGCGTGCGACCCGAGGCTCCTGAGACCCAAGGC
1 ATTTTTGAAAAACAGAAAATGAAAA-TACCTCAGCGTGCGACCCGAGGCT-C--A-ACTC-A-CC
* ** *
32177873 TCAAACCACCTCTCA-GATTATG
59 TC---TCAGAT-T-ATGAGT-TG
** ***** * * * * *
32177895 AGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACTTGTGACCCGAGGCTCAACTCACCTC
1 A-TTTTTGAAAAACA----GAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTC
32177960 TCAGATTATGAGTTG
61 TCAGATTATGAGTTG
* * * *
32177975 ATTTTTGAAAAACAGAAATTGAAAATACCTCAACTTGTGACCCGAGGCTCAACTCACCTCTCAGA
1 ATTTTTGAAAAACAGAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAGA
32178040 TTATGAGTTG
66 TTATGAGTTG
* *
32178050 ATTTTTGAAAAATAGAAAAAGAAA
1 ATTTTTGAAAAACAGAAAATGAAA
32178074 TGGTTTTTTC
Statistics
Matches: 405, Mismatches: 60, Indels: 49
0.79 0.12 0.10
Matches are distributed among these distances:
74 29 0.07
75 290 0.72
76 10 0.02
78 1 0.00
79 8 0.02
80 5 0.01
81 7 0.02
82 3 0.01
84 2 0.00
85 7 0.02
86 4 0.01
87 8 0.02
88 1 0.00
90 1 0.00
91 22 0.05
92 7 0.02
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (75 bp):
ATTTTTGAAAAACAGAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAGA
TTATGAGTTG
Found at i:32177806 original size:150 final size:150
Alignment explanation
Indices: 32177509--32178067 Score: 741
Period size: 150 Copynumber: 3.6 Consensus size: 150
32177499 TCCAAAAAAA
* * * * * *
32177509 AATTTTTGAAAAA-GGAACTTGAAAACACCTCGGCGTGCAACCCGAGGCTCAACTCACCTCTCGG
1 AATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAG
* *
32177573 ATTATGAGTTGATTTTTGAAAAACAGAAAATGAAAATACCTCAGCGTGCGACCCGAGGCTCAACT
66 ATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCTACCCGAGGCTCAACT
*
32177638 CCCCTCTCGGATTATGAGTT
131 CACCTCTCGGATTATGAGTT
32177658 AATTTTTGAAAAACAGAAATT-AAAAGTACCTCAGCGTGCGACCCGAGGCTCAAAC-CACCTCTC
1 AATTTTTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGCGACCCGAGGCTC-AACTCACCTCTC
*
32177721 AGATTATGAGTTGATTTTTGAAAAACAGAACTTGAAAATACCTCAGCGTGCTACCCGAGGCTCAA
64 AGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCTACCCGAGGCTCAA
32177786 CTCACCTCTCGGATTATGAGTT
129 CTCACCTCTCGGATTATGAGTT
32177808 AATTTTTGAAAAACAGAAATT-AAAAGTACCTCAGCGTGCGACCCGAGGCTCCTGAGACCCAAGG
1 AATTTTTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGCGACCCGAGG---CT------CAA--
* *
32177872 CTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACTTG
54 CT-----CACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTG
*
32177937 -TGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTT
114 CT-ACCCGAGGCTCAACTCACCTCTCGGATTATGAGTT
* * * *
32177974 GATTTTTGAAAAACAGAAATTGAAAATACCTCAACTTGTGACCCGAGGCTCAACTCACCTCTCAG
1 AATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAG
*
32178039 ATTATGAGTTGATTTTTGAAAAATAGAAA
66 ATTATGAGTTGATTTTTGAAAAACAGAAA
32178068 AAGAAATGGT
Statistics
Matches: 369, Mismatches: 19, Indels: 43
0.86 0.04 0.10
Matches are distributed among these distances:
149 17 0.05
150 203 0.55
151 3 0.01
153 2 0.01
155 2 0.01
157 3 0.01
158 2 0.01
159 1 0.00
160 1 0.00
163 2 0.01
165 1 0.00
166 128 0.35
167 4 0.01
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (150 bp):
AATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCAG
ATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCTACCCGAGGCTCAACT
CACCTCTCGGATTATGAGTT
Found at i:32177942 original size:91 final size:91
Alignment explanation
Indices: 32177773--32177949 Score: 268
Period size: 91 Copynumber: 1.9 Consensus size: 91
32177763 TCAGCGTGCT
* *
32177773 ACCCGAGGCTCAACTCACCTCTCGGATTATGAGTTAATTTTTGAAAAACAGAAATTAAAAGTACC
1 ACCCAAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAATTAAAAGTACC
*
32177838 TCAGCGTGCGACCCGAGGCTCCTGAG
66 TCAACGTGCGACCCGAGGCTCCTGAG
*
32177864 ACCCAAGGCTCAAAC-CACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAA-TA
1 ACCCAAGGCTC-AACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAATT-AAAAGTA
* *
32177927 CCTCAACTTGTGACCCGAGGCTC
64 CCTCAACGTGCGACCCGAGGCTC
32177950 AACTCACCTC
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
91 71 0.91
92 7 0.09
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (91 bp):
ACCCAAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAATTAAAAGTACC
TCAACGTGCGACCCGAGGCTCCTGAG
Found at i:32177981 original size:166 final size:166
Alignment explanation
Indices: 32177697--32178024 Score: 543
Period size: 166 Copynumber: 2.0 Consensus size: 166
32177687 CTCAGCGTGC
* *
32177697 GACCCGAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAACTTGAAAATAC
1 GACCCAAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATAC
* *
32177762 CTCAGCGTGCTACCCGAGGCTCAACTCACCTCTCGGATTATGAGTTAATTTTTGAAAAACAGAAA
66 CTCAACGTGCTACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAA
*
32177827 TT-AAAAGTACCTCAGCGTGCGACCCGAGGCTCCTGA
131 TTGAAAA-TACCTCAACGTGCGACCCGAGGCTCCTGA
32177863 GACCCAAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATAC
1 GACCCAAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATAC
* *
32177928 CTCAACTTG-TGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAA
66 CTCAACGTGCT-ACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAA
* *
32177992 ATTGAAAATACCTCAACTTGTGACCCGAGGCTC
130 ATTGAAAATACCTCAACGTGCGACCCGAGGCTC
32178025 AACTCACCTC
Statistics
Matches: 151, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
165 1 0.01
166 146 0.97
167 4 0.03
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (166 bp):
GACCCAAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATAC
CTCAACGTGCTACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAA
TTGAAAATACCTCAACGTGCGACCCGAGGCTCCTGA
Found at i:32178056 original size:241 final size:241
Alignment explanation
Indices: 32177622--32178067 Score: 711
Period size: 241 Copynumber: 1.9 Consensus size: 241
32177612 CTCAGCGTGC
* * *
32177622 GACCCGAGGCTCAACTCCCCTCTCGGATTATGAGTTAATTTTTGAAAAACAGAAATTAAAAGTAC
1 GACCCAAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAATTAAAAGTAC
* *
32177687 CTCAGCGTGCGACCCGAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAC
66 CTCAACGTGCGACCCGAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAA
* *
32177752 TTGAAAATACCTCAGCGTGCTACCCGAGGCTCAACTCACCTCTCGGATTATGAGTTAATTTTTGA
131 TTGAAAATACCTCAACGTGCTACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGA
32177817 AAAACAGAAATTAAAAGTACCTCAGCGTGCGACCCGAGGCTCCTGA
196 AAAACAGAAATTAAAAGTACCTCAGCGTGCGACCCGAGGCTCCTGA
*
32177863 GACCCAAGGCTCAAAC-CACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAA-T
1 GACCCAAGGCTC-AACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAATT-AAAAGT
* *
32177926 ACCTCAACTTGTGACCCGAGGCTC-AACTCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAG
64 ACCTCAACGTGCGACCCGAGGCTCAAAC-CACCTCTCAGATTATGAGTTGATTTTTGAAAAACAG
* *
32177990 AAATTGAAAATACCTCAACTTG-TGACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTGATTT
128 AAATTGAAAATACCTCAACGTGCT-ACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTAATTT
*
32178054 TTGAAAAATAGAAA
192 TTGAAAAACAGAAA
32178068 AAGAAATGGT
Statistics
Matches: 188, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
240 4 0.02
241 177 0.94
242 7 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (241 bp):
GACCCAAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGAAAAACAGAAATTAAAAGTAC
CTCAACGTGCGACCCGAGGCTCAAACCACCTCTCAGATTATGAGTTGATTTTTGAAAAACAGAAA
TTGAAAATACCTCAACGTGCTACCCGAGGCTCAACTCACCTCTCAGATTATGAGTTAATTTTTGA
AAAACAGAAATTAAAAGTACCTCAGCGTGCGACCCGAGGCTCCTGA
Found at i:32188341 original size:9 final size:9
Alignment explanation
Indices: 32188327--32188400 Score: 62
Period size: 10 Copynumber: 8.0 Consensus size: 9
32188317 CTTCCCTCTT
32188327 TTTTTTCTC
1 TTTTTTCTC
32188336 TTTTTTCT-
1 TTTTTTCTC
* *
32188344 TTCTTTCTT
1 TTTTTTCTC
32188353 TATTTTTCCTC
1 T-TTTTT-CTC
32188364 TTTTTTCT-
1 TTTTTTCTC
* *
32188372 TTCTTTCTT
1 TTTTTTCTC
32188381 TATTTTTCCTC
1 T-TTTTT-CTC
32188392 TTTTTTCTC
1 TTTTTTCTC
32188401 CTTCTTCTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
8 14 0.26
9 15 0.28
10 18 0.34
11 6 0.11
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTCTC
Found at i:32188346 original size:13 final size:12
Alignment explanation
Indices: 32188325--32188397 Score: 56
Period size: 13 Copynumber: 5.4 Consensus size: 12
32188315 TTCTTCCCTC
32188325 TTTTTTTTCTCT
1 TTTTTTTTCTCT
32188337 TTTTTCTTTCTTTCT
1 TTTTT-TTTC--TCT
*
32188352 TTATTTTTCCTCT
1 TT-TTTTTTCTCT
32188365 TTTTTCTTTCTTTCT
1 TTTTT-TTTC--TCT
*
32188380 TTATTTTTCCTCT
1 TT-TTTTTTCTCT
32188393 TTTTT
1 TTTTT
32188398 CTCCTTCTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
12 11 0.22
13 17 0.34
15 16 0.32
16 6 0.12
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTTCTCT
Found at i:32188365 original size:28 final size:28
Alignment explanation
Indices: 32188323--32188399 Score: 140
Period size: 28 Copynumber: 2.8 Consensus size: 28
32188313 GCTTCTTCCC
32188323 TCTTT-TTTTT-CTCTTTTTTCTTTCTT
1 TCTTTATTTTTCCTCTTTTTTCTTTCTT
32188349 TCTTTATTTTTCCTCTTTTTTCTTTCTT
1 TCTTTATTTTTCCTCTTTTTTCTTTCTT
32188377 TCTTTATTTTTCCTCTTTTTTCT
1 TCTTTATTTTTCCTCTTTTTTCT
32188400 CCTTCTTCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 5 0.10
27 5 0.10
28 39 0.80
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (28 bp):
TCTTTATTTTTCCTCTTTTTTCTTTCTT
Found at i:32188387 original size:20 final size:20
Alignment explanation
Indices: 32188321--32188373 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
32188311 AGGCTTCTTC
*
32188321 CCTCTTTTTT-TTCTCTTTTT
1 CCTCTTTTTTCTT-TATTTTT
32188341 --TCTTTCTTTCTTTATTTTT
1 CCTCTTT-TTTCTTTATTTTT
32188360 CCTCTTTTTTCTTT
1 CCTCTTTTTTCTTT
32188374 CTTTCTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 5 0.18
19 9 0.32
20 9 0.32
21 5 0.18
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (20 bp):
CCTCTTTTTTCTTTATTTTT
Found at i:32189116 original size:29 final size:29
Alignment explanation
Indices: 32189058--32189165 Score: 126
Period size: 30 Copynumber: 3.7 Consensus size: 29
32189048 AAAACTTCTA
* *
32189058 GGGTCAAAATGCAACTTTAAGAAAGTTAAG
1 GGGTCAAAATGTAATTTTAA-AAAGTTAAG
* *
32189088 GGGTTAAAATGTAATTTTAAAAAATTAAG
1 GGGTCAAAATGTAATTTTAAAAAGTTAAG
* * **
32189117 GAGTCAAAATATAATTTTAGAAAAGTTTGG
1 GGGTCAAAATGTAATTTTA-AAAAGTTAAG
32189147 GGGTCAAAATGTAATTTTA
1 GGGTCAAAATGTAATTTTA
32189166 GGAAATTAGA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 24 0.37
30 41 0.63
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (29 bp):
GGGTCAAAATGTAATTTTAAAAAGTTAAG
Found at i:32204470 original size:17 final size:17
Alignment explanation
Indices: 32204448--32204491 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
32204438 TAATCACTTT
32204448 AATATTAAATT-AATATA
1 AATATTAAATTAAAT-TA
* *
32204465 AATATTAGATTAAATTT
1 AATATTAAATTAAATTA
32204482 AATATTAAAT
1 AATATTAAAT
32204492 CTTTTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 20 0.87
18 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:32204488 original size:12 final size:12
Alignment explanation
Indices: 32204445--32204491 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
32204435 ACTTAATCAC
32204445 TTTAATATTAAA
1 TTTAATATTAAA
32204457 -TTAATA-TAAA
1 TTTAATATTAAA
*
32204467 TATT-AGATTAAA
1 T-TTAATATTAAA
32204479 TTTAATATTAAA
1 TTTAATATTAAA
32204491 T
1 T
32204492 CTTTTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 4 0.14
11 10 0.34
12 15 0.52
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:32204984 original size:19 final size:19
Alignment explanation
Indices: 32204960--32204996 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32204950 AAAATATCAT
32204960 ATTAATATTA-TTTAATTTG
1 ATTAAT-TTAGTTTAATTTG
32204979 ATTAATTTAGTTTAATTT
1 ATTAATTTAGTTTAATTT
32204997 TACTTGATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
ATTAATTTAGTTTAATTTG
Found at i:32207769 original size:20 final size:20
Alignment explanation
Indices: 32207744--32207785 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
32207734 TTAGATTCAT
32207744 TAGTATTATAT-TTATTGTTA
1 TAGTATTAT-TGTTATTGTTA
32207764 TAGTATTATTGTTATTGTTA
1 TAGTATTATTGTTATTGTTA
32207784 TA
1 TA
32207786 TTTTTACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.60
Consensus pattern (20 bp):
TAGTATTATTGTTATTGTTA
Found at i:32208660 original size:16 final size:16
Alignment explanation
Indices: 32208639--32208676 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
32208629 CGTTTGGTTC
32208639 GGTGTATTGGATTAGA
1 GGTGTATTGGATTAGA
32208655 GGTGTATTGGATTAGA
1 GGTGTATTGGATTAGA
32208671 GGTGTA
1 GGTGTA
32208677 ATAGCAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (16 bp):
GGTGTATTGGATTAGA
Found at i:32208933 original size:18 final size:17
Alignment explanation
Indices: 32208912--32208946 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32208902 TTATTATTAA
*
32208912 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32208930 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32208947 TCTTAATAAN
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32213663 original size:13 final size:13
Alignment explanation
Indices: 32213645--32213669 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32213635 TGGATTTGAT
32213645 TTGATTATGTAAA
1 TTGATTATGTAAA
32213658 TTGATTATGTAA
1 TTGATTATGTAA
32213670 TCTTGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGATTATGTAAA
Found at i:32214438 original size:24 final size:23
Alignment explanation
Indices: 32214393--32214438 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
32214383 ATTATATACA
*
32214393 ATAATTTTTGAATTTCACAATTC
1 ATAATTTTTGAATTTCAAAATTC
32214416 ATAATTATTTGATATTT-AAAATT
1 ATAATT-TTTGA-ATTTCAAAATT
32214439 TTTTTGGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.50
Consensus pattern (23 bp):
ATAATTTTTGAATTTCAAAATTC
Found at i:32217293 original size:50 final size:50
Alignment explanation
Indices: 32217226--32217468 Score: 317
Period size: 50 Copynumber: 4.7 Consensus size: 50
32217216 TTTCAAGTAC
* * **
32217226 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
32217276 TGCCCATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
32217326 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
*
32217376 TGCCAACGCCATGTACC-AGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGT-CCTAGACATGGTCTTACATGGGACCTCTCAT-A--TC--GG
*
32217431 ATGCCAATGCCATGTCCTAGACATGGTTTTACATGGGA
1 -TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
32217469 TCTCATTCCC
Statistics
Matches: 170, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
50 130 0.76
51 2 0.01
53 2 0.01
55 4 0.02
56 32 0.19
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:32223452 original size:16 final size:16
Alignment explanation
Indices: 32223431--32223466 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32223421 TTTGGTTCGC
32223431 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
32223447 TGTATTTGATTAGAGG
1 TGTATTGGATTAGAGG
32223463 TGTA
1 TGTA
32223467 ATAGCTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:32223594 original size:16 final size:16
Alignment explanation
Indices: 32223573--32223608 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32223563 TTTGGTTCGC
32223573 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
32223589 TGTATTTGATTAGAGG
1 TGTATTGGATTAGAGG
32223605 TGTA
1 TGTA
32223609 AAAACTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:32223644 original size:142 final size:143
Alignment explanation
Indices: 32223377--32223661 Score: 545
Period size: 142 Copynumber: 2.0 Consensus size: 143
32223367 TCGAACATGC
32223377 AAGAAGGTAATTGTATAAAAAATCCACACAATCTTTAGGGTGCGTTTGGTTCGCTGTATTGGATT
1 AAGAAGGTAATTGTATAAAAAATCCACACAATCTTTAGGGTGCGTTTGGTTCGCTGTATTGGATT
* *
32223442 AGAGGTGTATTTGATTAGAGGTGTAATAGCTATTCCACTGTTTGGTTGAATGTAATGGAGTAGAG
66 AGAGGTGTATTTGATTAGAGGTGTAAAAACTATTCCACTGTTTGGTTGAATGTAATGGAGTAGAG
32223507 GCGTAATAGTAAT
131 GCGTAATAGTAAT
32223520 AAGAAGGTAA-TGTATAAAAAATCCACACAATCTTTAGGGTGCGTTTGGTTCGCTGTATTGGATT
1 AAGAAGGTAATTGTATAAAAAATCCACACAATCTTTAGGGTGCGTTTGGTTCGCTGTATTGGATT
32223584 AGAGGTGTATTTGATTAGAGGTGTAAAAACTATTCCACTGTTTGGTTGAATGTAATGGAGTAGAG
66 AGAGGTGTATTTGATTAGAGGTGTAAAAACTATTCCACTGTTTGGTTGAATGTAATGGAGTAGAG
32223649 GCGTAATAGTAAT
131 GCGTAATAGTAAT
32223662 CTTGTGTTTG
Statistics
Matches: 140, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
142 130 0.93
143 10 0.07
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (143 bp):
AAGAAGGTAATTGTATAAAAAATCCACACAATCTTTAGGGTGCGTTTGGTTCGCTGTATTGGATT
AGAGGTGTATTTGATTAGAGGTGTAAAAACTATTCCACTGTTTGGTTGAATGTAATGGAGTAGAG
GCGTAATAGTAAT
Found at i:32223862 original size:16 final size:16
Alignment explanation
Indices: 32223825--32223879 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
32223815 TTAATCATAT
*
32223825 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
32223841 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
32223856 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
32223874 -TAAAAT
1 TTAAAAT
32223880 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:32223872 original size:18 final size:18
Alignment explanation
Indices: 32223831--32223879 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
32223821 ATATTTAAAC
32223831 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
32223849 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
32223865 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
32223880 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:32231418 original size:17 final size:17
Alignment explanation
Indices: 32231396--32231430 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
32231386 AAACAGTGGC
*
32231396 TGATTAACAGTTTTCGT
1 TGATTAACAGTTTCCGT
32231413 TGATTAACAGTTTCCGT
1 TGATTAACAGTTTCCGT
32231430 T
1 T
32231431 AGAGTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (17 bp):
TGATTAACAGTTTCCGT
Found at i:32246035 original size:23 final size:22
Alignment explanation
Indices: 32246008--32246088 Score: 96
Period size: 21 Copynumber: 3.8 Consensus size: 22
32245998 GCCGATTAGA
32246008 CACTTTATGTGTCGTATCTCAGG
1 CACTTTATGTGTCGTAT-TCAGG
32246031 CACTTTATGTGTCGTA-TCAGG
1 CACTTTATGTGTCGTATTCAGG
* ** *
32246052 CACCTCGTGTGTCGT-TTCAGA
1 CACTTTATGTGTCGTATTCAGG
32246073 CAC-TTATGTGTCGTAT
1 CACTTTATGTGTCGTAT
32246089 ACTGATCAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
20 9 0.18
21 25 0.50
23 16 0.32
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (22 bp):
CACTTTATGTGTCGTATTCAGG
Found at i:32251367 original size:26 final size:26
Alignment explanation
Indices: 32251303--32251369 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
32251293 TTATCATAAA
*
32251303 AAATAAAAATTATAAATAAAAAATCT
1 AAATAAAAATTAAAAATAAAAAATCT
** ** *
32251329 ATTTAAATTTTAAAAACTAAAAAGT-T
1 AAATAAAAATTAAAAA-TAAAAAATCT
32251355 AAATAAAAATTAAAA
1 AAATAAAAATTAAAA
32251370 TATTTTTATA
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (26 bp):
AAATAAAAATTAAAAATAAAAAATCT
Found at i:32252946 original size:20 final size:21
Alignment explanation
Indices: 32252904--32252948 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
32252894 GAAAATAGTA
*
32252904 TTTTTTTTATATAATTAAGTG
1 TTTTTTTTATATAAGTAAGTG
32252925 TTTTTTTTAT-TAAAGTAA-TG
1 TTTTTTTTATAT-AAGTAAGTG
32252945 TTTT
1 TTTT
32252949 AGTTCATTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (21 bp):
TTTTTTTTATATAAGTAAGTG
Found at i:32271286 original size:20 final size:19
Alignment explanation
Indices: 32271261--32271301 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
32271251 TTTTATTATT
*
32271261 TAATGTTTATGGGATTATAA
1 TAATG-TTATGGGATAATAA
32271281 TAATGTTATGGGATAATAA
1 TAATGTTATGGGATAATAA
32271300 TA
1 TA
32271302 TTAAGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (19 bp):
TAATGTTATGGGATAATAA
Found at i:32276281 original size:69 final size:68
Alignment explanation
Indices: 32276156--32276523 Score: 340
Period size: 69 Copynumber: 5.3 Consensus size: 68
32276146 ATTATCATAG
** * * * * * *
32276156 AAAAATCAAGGTTCATAGGCAAAGAGCCGCGACCTCTAAAACAATTAGTGAAAGCAAAGCTCCGA
1 AAAAATCAAGGTTCGCAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
32276221 GCT
66 GCT
* ** *
32276224 CAAAAATCAAGGTTTGCAGGCGAAGAGCCATGACCTCCAAAATAGTTAGCGAGAGCAAAGCTCCC
1 -AAAAATCAAGGTTCGCAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCC
32276289 AGCT
65 AGCT
* * *
32276293 ATAAAATCAAGGTTCGCAGGCGAAGAGCGGCGACCTCCAAAACAGTTAGCGAGAGTAAAACTCCC
1 A-AAAATCAAGGTTCGCAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCC
*
32276358 AACT
65 AGCT
* * * * * * * *
32276362 GTAAAATCAAGGTTCGCAAGTGAAGAGTCGCGACCTCCAAAATAGTTAGCGAGAGTAAAGTTTCC
1 -AAAAATCAAGGTTCGCAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCC
*
32276427 AACT
65 AGCT
* * *** * * * *
32276431 ATAAAATCAAGGTTCACAGGCGAAAAAATGCAACCTCCAAAACAGTCAGCAAAAGCAAAGCTCCC
1 A-AAAATCAAGGTTCGCAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCC
*
32276496 AACT
65 AGCT
* ** *
32276500 GTATGATCAAGGTTCGCAGACGAA
1 -AAAAATCAAGGTTCGCAGGCGAA
32276524 AAATTCTAAA
Statistics
Matches: 245, Mismatches: 50, Indels: 8
0.81 0.17 0.03
Matches are distributed among these distances:
68 1 0.00
69 244 1.00
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (68 bp):
AAAAATCAAGGTTCGCAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
GCT
Found at i:32276405 original size:138 final size:138
Alignment explanation
Indices: 32276157--32276517 Score: 425
Period size: 138 Copynumber: 2.6 Consensus size: 138
32276147 TTATCATAGA
* * * * * * *
32276157 AAAATCAAGGTTCATAGGCAAAGAGCCGCGACCTCTAAAACAATTAGTGAAAGCAAAGCTCCGAG
1 AAAATCAAGGTTCACAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAAAGCAAAGCTCCCAA
** * * *
32276222 CTCAAAAATCAAGGTTTGCAGGCGAAGAGCCATGACCTCCAAAATAGTTAGCGAGAGCAAAGCTC
66 CTGTAAAATCAAGGTTCGCAAGCGAAGAGCCACGACCTCCAAAATAGTTAGCGAGAGCAAAGCTC
*
32276287 CCAGCTAT
131 CCAACTAT
* * * * *
32276295 AAAATCAAGGTTCGCAGGCGAAGAGCGGCGACCTCCAAAACAGTTAGCGAGAGTAAAACTCCCAA
1 AAAATCAAGGTTCACAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAAAGCAAAGCTCCCAA
* * * * * *
32276360 CTGTAAAATCAAGGTTCGCAAGTGAAGAGTCGCGACCTCCAAAATAGTTAGCGAGAGTAAAGTTT
66 CTGTAAAATCAAGGTTCGCAAGCGAAGAGCCACGACCTCCAAAATAGTTAGCGAGAGCAAAGCTC
32276425 CCAACTAT
131 CCAACTAT
* *** * * *
32276433 AAAATCAAGGTTCACAGGCGAAAAAATGCAACCTCCAAAACAGTCAGCAAAAGCAAAGCTCCCAA
1 AAAATCAAGGTTCACAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAAAGCAAAGCTCCCAA
**
32276498 CTGTATGATCAAGGTTCGCA
66 CTGTAAAATCAAGGTTCGCA
32276518 GACGAAAAAT
Statistics
Matches: 186, Mismatches: 37, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
138 186 1.00
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (138 bp):
AAAATCAAGGTTCACAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAAAGCAAAGCTCCCAA
CTGTAAAATCAAGGTTCGCAAGCGAAGAGCCACGACCTCCAAAATAGTTAGCGAGAGCAAAGCTC
CCAACTAT
Found at i:32279819 original size:23 final size:23
Alignment explanation
Indices: 32279776--32279819 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
32279766 GAAATGTTAG
* *
32279776 TTTAAAAATCTTTTGGTTTTAAT
1 TTTAAAAATCTTTTAGATTTAAT
32279799 TTTAAGAAAT-TTTTAGATTTA
1 TTTAA-AAATCTTTTAGATTTA
32279820 TTCATATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (23 bp):
TTTAAAAATCTTTTAGATTTAAT
Found at i:32282902 original size:19 final size:19
Alignment explanation
Indices: 32282878--32282931 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
32282868 AATCTTTAAG
*
32282878 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAA
32282897 GATATGCAATCTTAGATAA
1 GATATGCAATCTTAGATAA
32282916 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
32282932 AGAAAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (19 bp):
GATATGCAATCTTAGATAA
Found at i:32283218 original size:51 final size:51
Alignment explanation
Indices: 32283142--32283262 Score: 179
Period size: 51 Copynumber: 2.4 Consensus size: 51
32283132 CGAAGACACC
* * * *
32283142 AATCTCATTTCCTTGGCGTTGCAGTGGTATAGATTGAAGTTGAGGGCAACG
1 AATCTCATTTCCTTGGCGTTGCAGTGGAATAAATTGAAGCTGAAGGCAACG
*
32283193 AATCTCATTTCCTTGGCGTTGCAGTGGAATAAATTGAAGCTGAAGGCAGCG
1 AATCTCATTTCCTTGGCGTTGCAGTGGAATAAATTGAAGCTGAAGGCAACG
* *
32283244 AATCTTATTTCCCTGGCGT
1 AATCTCATTTCCTTGGCGT
32283263 CATAGTAGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
AATCTCATTTCCTTGGCGTTGCAGTGGAATAAATTGAAGCTGAAGGCAACG
Found at i:32284014 original size:22 final size:22
Alignment explanation
Indices: 32283954--32284011 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
32283944 AATCTTCAAG
32283954 GATATGCAATCTT---AGATAA
1 GATATGCAATCTTAGAAGATAA
32283973 GATATGCAATCTTAGAAGATAA
1 GATATGCAATCTTAGAAGATAA
* *
32283995 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
32284012 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAA
Found at i:32284869 original size:24 final size:24
Alignment explanation
Indices: 32284838--32285087 Score: 148
Period size: 24 Copynumber: 10.7 Consensus size: 24
32284828 GTGTATTGTA
*
32284838 TATTATTATTTTAGATTTATCATG
1 TATTATTATTTTAAATTTATCATG
* *
32284862 TTTTATTATTTGT-AATTTATCA-A
1 TATTATTATTT-TAAATTTATCATG
*
32284885 TATTATTATTTTAAATTCAT--TG
1 TATTATTATTTTAAATTTATCATG
**
32284907 TTAACATTATTTTAAATTTATCATG
1 -TATTATTATTTTAAATTTATCATG
*
32284932 TA-TATCTATTTCAAATTTATCAT-
1 TATTAT-TATTTTAAATTTATCATG
* * *
32284955 TAATA-T-TTTTAAATTTATTATA
1 TATTATTATTTTAAATTTATCATG
* ** *
32284977 TACTATTATTTTGGATTTATCACG
1 TATTATTATTTTAAATTTATCATG
* *
32285001 TATGATTATTCTAGAA-TTATCAT-
1 TATTATTATTTTA-AATTTATCATG
* * *
32285024 CA-AAAT-TTTTAAATTTTAT-ATG
1 TATTATTATTTTAAA-TTTATCATG
* * *
32285046 TATTATTATTTCAAATTTATTATA
1 TATTATTATTTTAAATTTATCATG
*
32285070 TATTATTTATTGTAAATT
1 TATTA-TTATTTTAAATT
32285088 ATCCAATTCA
Statistics
Matches: 171, Mismatches: 36, Indels: 37
0.70 0.15 0.15
Matches are distributed among these distances:
20 2 0.01
21 19 0.11
22 13 0.08
23 46 0.27
24 77 0.45
25 14 0.08
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (24 bp):
TATTATTATTTTAAATTTATCATG
Found at i:32284916 original size:70 final size:69
Alignment explanation
Indices: 32284836--32285003 Score: 180
Period size: 70 Copynumber: 2.4 Consensus size: 69
32284826 AAGTGTATTG
* * ** *
32284836 TATATTATTATTTTAGATTTATCATGTTTTAT-TATTTGTAATTTATCAATATTATTATTTTAAA
1 TATACTATTATTTTAGATTTATCATG-TATATCTATTTCAAATTTATCAATAATA-T-TTTTAAA
*
32284900 TTCATTG
63 TTCATTA
* *
32284907 T-TAAC-ATTATTTTAAATTTATCATGTATATCTATTTCAAATTTATCATTAATATTTTTAAATT
1 TAT-ACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATATTTTTAAATT
*
32284970 TATTA
65 CATTA
* *
32284975 TATACTATTATTTTGGATTTATCACGTAT
1 TATACTATTATTTTAGATTTATCATGTAT
32285004 GATTATTCTA
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
68 15 0.19
69 26 0.32
70 38 0.47
71 2 0.02
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (69 bp):
TATACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATATTTTTAAATTC
ATTA
Found at i:32285021 original size:69 final size:68
Alignment explanation
Indices: 32284797--32285078 Score: 206
Period size: 69 Copynumber: 4.1 Consensus size: 68
32284787 TGTTTATACT
* * * * * *
32284797 TATTA-TTA-AATTAATCATTAATATTATCTAAGTGTATTGTATATTATTATTTTAGATTTATCA
1 TATTATTTAGAATTTATCATTAATATT-TTTAAATTTATTATATACTATTATTTTAGATTTATCA
*
32284860 TGTTT
65 TG-TA
* * * * *
32284865 TATTATTT-GTAATTTATCAATATTATTATTTTAAATTCATTGT-TAAC-ATTATTTTAAATTTA
1 TATTATTTAG-AATTTATCATTAATA-T-TTTTAAATTTATTATAT-ACTATTATTTTAGATTTA
32284927 TCATGTA
62 TCATGTA
*
32284934 TATCTATTTCA-AATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTGGATTTATC
1 TAT-TATTT-AGAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTAGATTTATC
*
32284998 ACGTA
64 ATGTA
* * * * * *
32285003 TGATTATTCTAGAA-TTATCATCAAAATTTTTAAATTT-TATATGTATTATTATTTCAAATTTAT
1 T-ATTATT-TAGAATTTATCATTAATATTTTTAAATTTAT-TATATACTATTATTTTAGATTTAT
*
32285066 --TATA
63 CATGTA
32285070 TATTATTTA
1 TATTATTTA
32285079 TTGTAAATTA
Statistics
Matches: 173, Mismatches: 26, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
65 2 0.01
66 6 0.03
67 3 0.02
68 21 0.12
69 73 0.42
70 55 0.32
71 12 0.07
72 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.54
Consensus pattern (68 bp):
TATTATTTAGAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTAGATTTATCAT
GTA
Found at i:32288163 original size:24 final size:24
Alignment explanation
Indices: 32288136--32288201 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
32288126 AGCTCATAAT
*
32288136 AGCCATAAACGGGAAGCT-CATGCG
1 AGCCATAAACGGGAAGCTCCA-ACG
* *
32288160 AGCCA-ATAACGAGTAGCTCCAACG
1 AGCCATA-AACGGGAAGCTCCAACG
*
32288184 AGCCATTAACGGGAAGCT
1 AGCCATAAACGGGAAGCT
32288202 TCAGATAGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
23 1 0.03
24 30 0.91
25 2 0.06
ACGTcount: A:0.35, C:0.26, G:0.26, T:0.14
Consensus pattern (24 bp):
AGCCATAAACGGGAAGCTCCAACG
Found at i:32288212 original size:48 final size:49
Alignment explanation
Indices: 32288136--32288318 Score: 128
Period size: 48 Copynumber: 3.7 Consensus size: 49
32288126 AGCTCATAAT
* * *
32288136 AGCCATAAACGGGAAGC-TCATGCGAGCCA-ATAACGAGTAGCTCCAA-CG
1 AGCCATTAACGGGAAGCTTCA-GAGAGCCATATAACGAGAAG-TCCAAGCG
* * *
32288184 AGCCATTAACGGGAAGCTTCAGATAGCCATATATCGAGAAGTTCAAGCG
1 AGCCATTAACGGGAAGCTTCAGAGAGCCATATAACGAGAAGTCCAAGCG
* * * ** *
32288233 AGCCA-TATCGAGAAGCTTTAGAGAGCCAT-TAATTAGGAAGCTCACAA-AG
1 AGCCATTAACGGGAAGCTTCAGAGAGCCATATAACGA-GAAG-TC-CAAGCG
*
32288282 AGCCTTTAATCGGGAAGC-TCACGAAGAGCCATATAAC
1 AGCCATTAA-CGGGAAGCTTCA-G-AGAGCCATATAAC
32288319 AGGACGCTCA
Statistics
Matches: 104, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
47 3 0.03
48 50 0.48
49 25 0.24
50 7 0.07
51 8 0.08
52 8 0.08
53 3 0.03
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.18
Consensus pattern (49 bp):
AGCCATTAACGGGAAGCTTCAGAGAGCCATATAACGAGAAGTCCAAGCG
Found at i:32288258 original size:23 final size:23
Alignment explanation
Indices: 32288196--32288261 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
32288186 CCATTAACGG
* *
32288196 GAAGCTTCAGATAGCCATATATCGA
1 GAAGCTTAAGAGAGCC--ATATCGA
*
32288221 GAAG-TTCAAGCGAGCCATATCGA
1 GAAGCTT-AAGAGAGCCATATCGA
*
32288244 GAAGCTTTAGAGAGCCAT
1 GAAGCTTAAGAGAGCCAT
32288262 TAATTAGGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 20 0.59
24 4 0.12
25 10 0.29
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (23 bp):
GAAGCTTAAGAGAGCCATATCGA
Found at i:32288285 original size:26 final size:26
Alignment explanation
Indices: 32288254--32288328 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
32288244 GAAGCTTTAG
*
32288254 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
32288280 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
*
32288306 AGAGCCATATAA-CAGGACGCTCA
1 AGAGCCAT-TAATCAGGAAGCTCA
32288329 TAAGAGTAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 38 0.93
27 3 0.07
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:32288632 original size:22 final size:22
Alignment explanation
Indices: 32288607--32288658 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
32288597 CAATAATACA
32288607 AACACATACATACAATTAAATT
1 AACACATACATACAATTAAATT
*
32288629 AACACATACATACAATTCAATT
1 AACACATACATACAATTAAATT
32288651 AACACATA
1 AACACATA
32288659 TAGATTCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.54, C:0.21, G:0.00, T:0.25
Consensus pattern (22 bp):
AACACATACATACAATTAAATT
Found at i:32288822 original size:5 final size:5
Alignment explanation
Indices: 32288793--32288831 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
32288783 TAAATTTAGC
* *
32288793 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
32288832 CATCTTAGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:32305712 original size:4 final size:4
Alignment explanation
Indices: 32305703--32305728 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
32305693 TTTAAAACAC
32305703 TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TA
32305729 ATTGCTTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:32310145 original size:14 final size:15
Alignment explanation
Indices: 32310128--32310161 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32310118 AATAAATATC
32310128 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
32310142 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
32310157 TAAAA
1 TAAAA
32310162 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:32310388 original size:22 final size:22
Alignment explanation
Indices: 32310358--32310399 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32310348 ATTTGGAGAT
*
32310358 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
32310380 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
32310400 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:32310420 original size:52 final size:51
Alignment explanation
Indices: 32310349--32310451 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
32310339 TTAATATGGA
* * *
32310349 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTT-GAAGGGAA-TTGAGAG
*
32310400 TTTGAGAGAATTTTGGAAGGAAATTGATAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
32310452 AAATTTTGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 32 0.71
53 9 0.20
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.33
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:32310426 original size:22 final size:23
Alignment explanation
Indices: 32310401--32310492 Score: 111
Period size: 22 Copynumber: 4.2 Consensus size: 23
32310391 ATTTGAGAGT
32310401 TTGAGAG-AATTTTGGAAGGAAA
1 TTGAGAGAAATTTTGGAAGGAAA
* *
32310423 TTGATAGAAATTTT-GAAGGGAA
1 TTGAGAGAAATTTTGGAAGGAAA
*
32310445 TTGAGAGAAATTTTGAAAGG-AA
1 TTGAGAGAAATTTTGGAAGGAAA
* *
32310467 TTGAGAG-AATTTTTGAAAGAAA
1 TTGAGAGAAATTTTGGAAGGAAA
32310489 TTGA
1 TTGA
32310493 TATTGAATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
21 9 0.15
22 41 0.68
23 10 0.17
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (23 bp):
TTGAGAGAAATTTTGGAAGGAAA
Found at i:32310450 original size:44 final size:44
Alignment explanation
Indices: 32310401--32310492 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
32310391 ATTTGAGAGT
* * * *
32310401 TTGAGAG-AATTTTGGAAGGAAATTGATAGAAATTTTGAAGGGAA
1 TTGAGAGAAATTTTGAAAGG-AATTGAGAGAAATTTTGAAAGAAA
*
32310445 TTGAGAGAAATTTTGAAAGGAATTGAGAGAATTTTTGAAAGAAA
1 TTGAGAGAAATTTTGAAAGGAATTGAGAGAAATTTTGAAAGAAA
32310489 TTGA
1 TTGA
32310493 TATTGAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 31 0.74
45 11 0.26
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (44 bp):
TTGAGAGAAATTTTGAAAGGAATTGAGAGAAATTTTGAAAGAAA
Found at i:32310944 original size:24 final size:24
Alignment explanation
Indices: 32310917--32310962 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
32310907 AATATAAGTC
*
32310917 TTTTTATAATTAAATTTATATAAA
1 TTTTTATAATTAAAATTATATAAA
32310941 TTTTTATAATTAAAATTATATA
1 TTTTTATAATTAAAATTATATA
32310963 TTGTTTGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTTTATAATTAAAATTATATAAA
Found at i:32313035 original size:17 final size:18
Alignment explanation
Indices: 32313013--32313049 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
32313003 TATATTTGGT
32313013 AAATAAAAAT-TAAAATA
1 AAATAAAAATCTAAAATA
*
32313030 AAATAAAAATCTAAATTA
1 AAATAAAAATCTAAAATA
32313048 AA
1 AA
32313050 TAATTAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATAAAAATCTAAAATA
Found at i:32317774 original size:120 final size:119
Alignment explanation
Indices: 32317561--32317784 Score: 283
Period size: 120 Copynumber: 1.9 Consensus size: 119
32317551 GGACTTGAAT
** * *
32317561 ATCTACAATTTCGGCACAAGAATCACCCCAAAAGGTGGTCTGAAGGTTTCAAAAAGTCAAGTCCA
1 ATCTACAATTTCAACACAAGAATCACCCCAAAAGGTGGTCAGAAGGTCTCAAAAAGTCAAGTCCA
** *
32317626 ATTGACCCTTGTGAAACTCAACGATTAATCTTGAACTTTCGAAGAGGACTCAACG
66 ATTGACCCTTACGAAACCCAACGATTAATCTTGAA-TTTCGAAGAGGACTCAACG
* * ***
32317681 ATCTACAATTTCAACACAAGAATCACCCCAAAATGTGGTCAGATGGTCTCAGGCAGTCAAG-CCA
1 ATCTACAATTTCAACACAAGAATCACCCCAAAAGGTGGTCAGAAGGTCTCAAAAAGTCAAGTCC-
32317745 AAGTT-ACCCTTACGAAACCCAAC-AGTTAATCTTGAATTTC
65 AA-TTGACCCTTACGAAACCCAACGA-TTAATCTTGAATTTC
32317785 CTATAGGGAA
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
119 7 0.08
120 80 0.90
121 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (119 bp):
ATCTACAATTTCAACACAAGAATCACCCCAAAAGGTGGTCAGAAGGTCTCAAAAAGTCAAGTCCA
ATTGACCCTTACGAAACCCAACGATTAATCTTGAATTTCGAAGAGGACTCAACG
Found at i:32319036 original size:157 final size:155
Alignment explanation
Indices: 32318751--32319052 Score: 437
Period size: 157 Copynumber: 1.9 Consensus size: 155
32318741 GACTCCATAA
* * *
32318751 CTAAATAATTTTGTAATTAATAGACGTAGGTTCAAGCCTTAATTATAAATTATTTGATCTCTAAT
1 CTAAATAATTTTGTAATTAATAGACGTAGGGTCAA-CCTTAATTACAAATTATTTGAGCTCTAAT
** ** *
32318816 TTATATGTTTAATAAGTCCCTCTGCTAGCTCGATATAGCCTTGATGGTTTACATTAATTGATGAA
65 TTATATGTCCAATAAGTCCCTCCCCTAGCTCGATATAACCTTGATGGTTTACATTAATTGATGAA
32318881 ATGAAAAATTGTGAATAATTCTATGG
130 ATGAAAAATTGTGAATAATTCTATGG
*
32318907 CTAAATAATGTTT-TTATTAATAGACGTAGGGTCGGAA-CTTAATTACAAATTATTTGAGCTCTA
1 CTAAATAAT-TTTGTAATTAATAGACGTAGGGTC--AACCTTAATTACAAATTATTTGAGCTCTA
** *
32318970 ACTTTATATGTCCAATCGGTCCCTCCCCTAGCTCGATATAACCTTGATGGTTTGCATTAATTGAT
63 A-TTTATATGTCCAATAAGTCCCTCCCCTAGCTCGATATAACCTTGATGGTTTACATTAATTGAT
32319035 GAAATGAAAAATTGTGAA
127 GAAATGAAAAATTGTGAA
32319053 ACAATGAAGA
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
156 52 0.40
157 76 0.58
158 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (155 bp):
CTAAATAATTTTGTAATTAATAGACGTAGGGTCAACCTTAATTACAAATTATTTGAGCTCTAATT
TATATGTCCAATAAGTCCCTCCCCTAGCTCGATATAACCTTGATGGTTTACATTAATTGATGAAA
TGAAAAATTGTGAATAATTCTATGG
Found at i:32321201 original size:12 final size:11
Alignment explanation
Indices: 32321184--32321218 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
32321174 AACAAATCCT
32321184 CTCTCATATTTC
1 CTCTCA-ATTTC
32321196 CTCTCAA-TTC
1 CTCTCAATTTC
32321206 CTCTCAATTTC
1 CTCTCAATTTC
32321217 CT
1 CT
32321219 TCCAAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:32321231 original size:22 final size:22
Alignment explanation
Indices: 32321201--32321256 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
32321191 ATTTCCTCTC
32321201 AATTCCTCTCAATTTCCTTCCAA
1 AATT-CTCTCAATTTCCTTCCAA
*
32321224 AATTCTCTCACTTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
32321246 AATTCTCTCAA
1 AATTCTCTCAA
32321257 ATCCATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 27 0.87
23 4 0.13
ACGTcount: A:0.27, C:0.34, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:32321631 original size:12 final size:11
Alignment explanation
Indices: 32321614--32321648 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
32321604 AACAAATCCT
32321614 CTCTCATATTTC
1 CTCTCA-ATTTC
32321626 CTCTCAA-TTC
1 CTCTCAATTTC
32321636 CTCTCAATTTC
1 CTCTCAATTTC
32321647 CT
1 CT
32321649 TCCAAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:32321661 original size:22 final size:22
Alignment explanation
Indices: 32321631--32321686 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
32321621 ATTTCCTCTC
32321631 AATTCCTCTCAATTTCCTTCCAA
1 AATT-CTCTCAATTTCCTTCCAA
*
32321654 AATTCTCTCACTTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
32321676 AATTCTCTCAA
1 AATTCTCTCAA
32321687 ATCCATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 27 0.87
23 4 0.13
ACGTcount: A:0.27, C:0.34, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:32322875 original size:7 final size:7
Alignment explanation
Indices: 32322865--32322896 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
32322855 ATTCGATTGA
32322865 TATTTAG
1 TATTTAG
32322872 TATTTAG
1 TATTTAG
32322879 TATTTAG
1 TATTTAG
32322886 TATTTAG
1 TATTTAG
32322893 TATT
1 TATT
32322897 ATGTATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:32323577 original size:18 final size:18
Alignment explanation
Indices: 32323551--32323585 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32323541 AGGTGCGTTT
*
32323551 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
32323569 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
32323586 TCCTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:32324043 original size:44 final size:45
Alignment explanation
Indices: 32323992--32324076 Score: 129
Period size: 44 Copynumber: 1.9 Consensus size: 45
32323982 ATTTTGAAAT
*
32323992 TTTTGATATTATTTTATGTAA-AAGAATAGAAATTT-TTTGAGTTA
1 TTTTGATATTATTTGATGTAATAA-AATAGAAATTTATTTGAGTTA
*
32324036 TTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGA
32324077 TGTAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
44 30 0.81
45 7 0.19
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.49
Consensus pattern (45 bp):
TTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGAGTTA
Found at i:32324667 original size:17 final size:18
Alignment explanation
Indices: 32324626--32324667 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
32324616 TTTACTAACC
* *
32324626 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
32324644 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
32324661 ATTAATA
1 ATTAATA
32324668 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:32326114 original size:22 final size:22
Alignment explanation
Indices: 32326086--32326134 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
32326076 GTCTGTGATG
32326086 GCACCGGGGACGTATCTCTCTA
1 GCACCGGGGACGTATCTCTCTA
32326108 GCACCGGGGACGTATCTCTCTA
1 GCACCGGGGACGTATCTCTCTA
32326130 GCACC
1 GCACC
32326135 TGAGACCACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (22 bp):
GCACCGGGGACGTATCTCTCTA
Found at i:32327998 original size:126 final size:122
Alignment explanation
Indices: 32327687--32328038 Score: 483
Period size: 126 Copynumber: 2.8 Consensus size: 122
32327677 CCCAAACATG
* *
32327687 CTACTGTAGTAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGT
1 CTACTGTAGT-AAAATGC-TCCAC-AGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
32327752 TAGAAGTGATTTTATATTATTTGCTCAGAAACGTC-AAAAAAAATTATTTCTTACATGAC
63 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
* * *
32327811 CTACTGTAGCAAAATCGCGCTGAC-GGGCCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGTAAAAT-GCTC-CACAGGG--CGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * * *
32327875 CTAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAATAATTATTTCTTTCGTGAC
62 CTAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAA-AATTATTTCTTACATGAC
32327937 CTACTGTAGTAAAAGTGCATCCACAAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGTAAAA-TGC-TCCAC-AGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
**
32328002 TAGAAGTGATTTTATACTATTTTATCAGAAACGTCAA
63 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAA
32328039 CTCGAAATTA
Statistics
Matches: 201, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
122 3 0.01
123 5 0.02
124 80 0.40
125 6 0.03
126 102 0.51
127 2 0.01
128 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (122 bp):
CTACTGTAGTAAAATGCTCCACAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTAG
AAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
Found at i:32330355 original size:100 final size:100
Alignment explanation
Indices: 32330178--32330571 Score: 500
Period size: 100 Copynumber: 3.9 Consensus size: 100
32330168 ATACGTAGCC
* * *
32330178 TGTAGCTTCAATCATTTTAACTGCAATGTCGGGGCAGTAAGATTCGCCATTGTGGCTTTAAACTG
1 TGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTGGCTTCAAACTG
* *
32330243 TTCCACTACACCGCCTGGGAAATAATATTCGCTGT
66 TTCCACTGCACCGCCTGGGAAATAAGATTCGCTGT
* * * * * *
32330278 TGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGTAAGATTCGCTATTATAGCTTCAATCTG
1 TGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTGGCTTCAAACTG
* * * * *
32330343 TTTCACTGCACCGCCTGAGAAGTAAGATTTGCCGT
66 TTCCACTGCACCGCCTGGGAAATAAGATTCGCTGT
* * ** * * * *
32330378 TGTGGCTTCAATCTTTTTAATTGGGATGTCAGGGAAGTAAGATTCACCGTTGTGGCTTTAAACTG
1 TGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTGGCTTCAAACTG
32330443 TTCCACTGCACCGCCTGGGAAATAAGATTCGCTGT
66 TTCCACTGCACCGCCTGGGAAATAAGATTCGCTGT
* * * * * *
32330478 TGTAGGTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAATATTTGCCATTGTGGCTTCAATCTG
1 TGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTGGCTTCAAACTG
**
32330543 TTCCACTGCACCGCCTGGGACGTAAGATT
66 TTCCACTGCACCGCCTGGGAAATAAGATT
32330572 TGCTATTCTC
Statistics
Matches: 243, Mismatches: 51, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
100 243 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
TGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTGGCTTCAAACTG
TTCCACTGCACCGCCTGGGAAATAAGATTCGCTGT
Found at i:32330538 original size:200 final size:200
Alignment explanation
Indices: 32330182--32330574 Score: 597
Period size: 200 Copynumber: 2.0 Consensus size: 200
32330172 GTAGCCTGTA
* * *
32330182 GCTTCAATCATTTTAACTGCAATGTCGGGGCAGTAAGATTCGCCATTGTGGCTTTAAACTGTTCC
1 GCTTCAATCATTTTAACTGCAATGTCAGGGAAGTAAGATTCACCATTGTGGCTTTAAACTGTTCC
*
32330247 ACTACACCGCCTGGGAAATAATATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGA
66 ACTACACCGCCTGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGA
* * *
32330312 AAGTAAGATTCGCTATTATAGCTTCAATCTGTTTCACTGCACCGCCTGAGAAGTAAGATTTGCCG
131 AAGCAAGATTCGCCATTATAGCTTCAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTTGCCG
32330377 TTGTG
196 TTGTG
* * ** *
32330382 GCTTCAATCTTTTTAATTGGGATGTCAGGGAAGTAAGATTCACCGTTGTGGCTTTAAACTGTTCC
1 GCTTCAATCATTTTAACTGCAATGTCAGGGAAGTAAGATTCACCATTGTGGCTTTAAACTGTTCC
* * *
32330447 ACTGCACCGCCTGGGAAATAAGATTCGCTGTTGTAGGTTTAATCTTTTTAACTGCAATGTCGGGG
66 ACTACACCGCCTGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGA
* * * * * *
32330512 AAGCAATATTTGCCATTGTGGCTTCAATCTGTTCCACTGCACCGCCTGGGACGTAAGATTTGC
131 AAGCAAGATTCGCCATTATAGCTTCAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTTGC
32330575 TATTCTCAGT
Statistics
Matches: 172, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
200 172 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (200 bp):
GCTTCAATCATTTTAACTGCAATGTCAGGGAAGTAAGATTCACCATTGTGGCTTTAAACTGTTCC
ACTACACCGCCTGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGA
AAGCAAGATTCGCCATTATAGCTTCAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTTGCCG
TTGTG
Found at i:32330574 original size:50 final size:50
Alignment explanation
Indices: 32330213--32330571 Score: 256
Period size: 50 Copynumber: 7.2 Consensus size: 50
32330203 ATGTCGGGGC
* * * *
32330213 AGTAAGATTCGCCATTGTGGCTTTAAACTGTTCCACTACACCGCCTGGGA
1 AGTAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTGCACCGCCTGGGA
* * * * * * ** *
32330263 AATAATATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGGAA
1 AGTAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTGCACCGCCTGGG-A
** * * * *
32330313 AGTAAGATTCGCTATTATAGCTTCAATCTGTTTCACTGCACCGCCTGAGA
1 AGTAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTGCACCGCCTGGGA
* * * * * * * * *
32330363 AGTAAGATTTGCCGTTGTGGCTTCAATCTTTTTAATTGGGA-TGTCAGGGA
1 AGTAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACT-GCACCGCCTGGGA
* * *
32330413 AGTAAGATTCACCGTTGTGGCTTTAAACTGTTCCACTGCACCGCCTGGGA
1 AGTAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTGCACCGCCTGGGA
* * * * ** * *
32330463 AATAAGATTCGCTGTTGTAGG-TTTAATCTTTTTAACTGCAATGTCGGGGA
1 AGTAAGATTCGCCGTTGT-GGCTTTAATCTGTTTCACTGCACCGCCTGGGA
* * * * * *
32330513 AGCAATATTTGCCATTGTGGCTTCAATCTGTTCCACTGCACCGCCTGGGA
1 AGTAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTGCACCGCCTGGGA
*
32330563 CGTAAGATT
1 AGTAAGATT
32330572 TGCTATTCTC
Statistics
Matches: 226, Mismatches: 77, Indels: 12
0.72 0.24 0.04
Matches are distributed among these distances:
49 7 0.03
50 213 0.94
51 6 0.03
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (50 bp):
AGTAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTGCACCGCCTGGGA
Found at i:32330641 original size:44 final size:45
Alignment explanation
Indices: 32330572--32330659 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 45
32330562 ACGTAAGATT
* * *
32330572 TGCTATTCTCAGTCTACCCCACTGCAACTTCAGGGGGATAAGACC
1 TGCTATTCTCAGTCCACCCCACTGCAACTTCAAGGAGATAAGACC
* *
32330617 TGCT-TTCTCAGTCCACTCCGCTGCAACTTCAAGGAGATAAGAC
1 TGCTATTCTCAGTCCACCCCACTGCAACTTCAAGGAGATAAGAC
32330660 TTGATGCGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 34 0.89
45 4 0.11
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (45 bp):
TGCTATTCTCAGTCCACCCCACTGCAACTTCAAGGAGATAAGACC
Found at i:32330870 original size:88 final size:88
Alignment explanation
Indices: 32330800--32331517 Score: 797
Period size: 88 Copynumber: 8.2 Consensus size: 88
32330790 TGGTGTTTTC
* * * * *
32330800 AACCTACTCCGCTACAACCCAAGGAGGCAAAGCTGGTGTCTTCGATCTGCTTCGTTGTTAGTACA
1 AACCTGCTCCGCTGCAACCCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACA
*
32330865 GGAAGGCAAGATCTGCTATCTTC
66 GGAAGGCAAGATCTGCTATCTTT
* * * * * * *
32330888 AACTTGCTCTGCTGTAA-CCTAGTGAGGCAAGGCTAGTGTCTTTGATCTGCTTCACTGTCAGTAC
1 AACCTGCTCCGCTGCAACCCAAG-GAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTAC
* *
32330952 AGGAAAGCAAGATCTGCTATCTAT
65 AGGAAGGCAAGATCTGCTATCTTT
* * * *
32330976 AACCTGCTCCGCTGCAACCGAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCGCTGTCAAT-CT
1 AACCTGCTCCGCTGCAACCCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTAC-
* *
32331040 AAGAAGACAAGATCTGCTATCTTT
65 AGGAAGGCAAGATCTGCTATCTTT
* * * * * *
32331064 AACCTGCTCCACTGCAACCC-AGTGAGGCAATGCTAGTATCTTCGATCTGCTTCACTATCAGTAC
1 AACCTGCTCCGCTGCAACCCAAG-GAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTAC
* *
32331128 AGGAAGGCAATATCTGCTGT-TTT
65 AGGAAGGCAAGATCTGCTATCTTT
* * * *
32331151 CAACCTGCTCCGCTGCAA-CCAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
1 -AACCTGCTCCGCTGCAACCCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTAC
32331215 AGGAAGGCAAGATCTGCTATCTTT
65 AGGAAGGCAAGATCTGCTATCTTT
** * * * * * *
32331239 AACCTGCTCTACTGTAACCCAGGGAGGCAAGGCTGGTGTCTTTGATCTGTTTCGCTGTCAATGCA
1 AACCTGCTCCGCTGCAACCCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACA
* *
32331304 GGAAGACAAGATCTACTATCTTT
66 GGAAGGCAAGATCTGCTATCTTT
* *
32331327 AACCTGCTCCGCTGCAACCC-AGTGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGTAC
1 AACCTGCTCCGCTGCAACCCAAG-GAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTAC
32331391 AGGAAGGCAAGATCTGCTAT-TTT
65 AGGAAGGCAAGATCTGCTATCTTT
* * * * * * *
32331414 CATCCTGCTCCGCTGCTACCCAGGGAGGCAAGGGTGGTATCTTCGATCTGCTTCGCTGT-TGATC
1 -AACCTGCTCCGCTGCAACCCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAG-TA
* *
32331478 CAGGAAGGCAATATCTG-TAATTTTT
64 CAGGAAGGCAAGATCTGCT-ATCTTT
* *
32331503 AACCTACTCCACTGC
1 AACCTGCTCCGCTGC
32331518 TGTATATGGA
Statistics
Matches: 527, Mismatches: 88, Indels: 30
0.82 0.14 0.05
Matches are distributed among these distances:
87 83 0.16
88 437 0.83
89 7 0.01
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (88 bp):
AACCTGCTCCGCTGCAACCCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACA
GGAAGGCAAGATCTGCTATCTTT
Found at i:32331267 original size:44 final size:44
Alignment explanation
Indices: 32331214--32331357 Score: 114
Period size: 44 Copynumber: 3.3 Consensus size: 44
32331204 GCTGTCAATG
*
32331214 CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCTACTGTAACC
1 CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCTGCTGTAACC
* * * * * * * **
32331258 CAGGGAGGCAAG-GCTGGTGTCTTTGATCTG-TTTCGCTGTCAATG
1 CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCT-GCTGT-AACC
* * * *
32331302 CAGGAAGACAAGATCTACTATCTTTAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCTGCTGTAACC
32331346 CAGTG-AGGCAAG
1 CAG-GAAGGCAAG
32331358 GCTAGTGTCT
Statistics
Matches: 71, Mismatches: 24, Indels: 10
0.68 0.23 0.10
Matches are distributed among these distances:
42 2 0.03
43 17 0.24
44 34 0.48
45 17 0.24
46 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCTGCTGTAACC
Found at i:32331340 original size:351 final size:353
Alignment explanation
Indices: 32330751--32331512 Score: 991
Period size: 351 Copynumber: 2.2 Consensus size: 353
32330741 GGATTTTTGG
* * * * * * *
32330751 CTTCGATCTGCTTCATTA-CCGATACAAGAAGGTAAGATTTGGTGTTTTCAACCTACTCCGCTAC
1 CTTCGATCTGCTTCACTATCAGATACAGGAAGGCAATATCTGCTGTTTTCAACCTACTCCGCTAC
* * *
32330815 AACCCAAGGAGGCAAAGCTGGTGTCTTCGATCTGCTTCGTTGTTAGTACAGGAAGGCAAGATCTG
66 AACCCAAGGAGGCAAAGCTGGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTG
* * * *
32330880 CTATCTTCAACTTGCTCTGCTGTAACCTAGTGAGGCAAGGCTAGTGTCTTTGATCTGCTTCACTG
131 CTATCTTCAACCTGCTCTACTGTAACCCAGGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCACTG
* * *
32330945 TCAGTACAGGAAAGCAAGATCTGCTATCTATAACCTGCTCCGCTGCAACCGAGGGAGGCAAGGCT
196 TCAATACAGGAAAGCAAGATCTACTATCTATAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCT
* * *
32331010 GGTGTTTTCGATCTGCTTCGCTGTCAAT-CTAAGAAGACAAGATCTGCTATCTTT-AACCTGCTC
261 AGTGTCTTCGATCTGCTTCACTGTCAATAC-AAGAAGACAAGATCTGCTAT-TTTCAACCTGCTC
* *
32331073 CACTGCAACCCAGTGAGGCAATGCTAGTAT
324 CACTGCAACCCAGGGAGGCAAGGCTAGTAT
* *
32331103 CTTCGATCTGCTTCACTATCAG-TACAGGAAGGCAATATCTGCTGTTTTCAACCTGCTCCGCTGC
1 CTTCGATCTGCTTCACTATCAGATACAGGAAGGCAATATCTGCTGTTTTCAACCTACTCCGCTAC
* * * *
32331167 AA-CCAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG
66 AACCCAAGGAGGCAAAGCTGGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTG
* * * *
32331231 CTATCTTTAACCTGCTCTACTGTAACCCAGGGAGGCAAGGCTGGTGTCTTTGATCTGTTTCGCTG
131 CTATCTTCAACCTGCTCTACTGTAACCCAGGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCACTG
* * *
32331296 TCAATGCAGG-AAGACAAGATCTACTATCTTTAACCTGCTCCGCTGCAACCCAGTGAGGCAAGGC
196 TCAATACAGGAAAG-CAAGATCTACTATCTATAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGC
* * * *
32331360 TAGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCATCCTGCTCC
260 TAGTGTCTTCGATCTGCTTCACTGTCAATACAAGAAGACAAGATCTGCTATTTTCAACCTGCTCC
* * * *
32331425 GCTGCTACCCAGGGAGGCAAGGGTGGTAT
325 ACTGCAACCCAGGGAGGCAAGGCTAGTAT
* * * * * *
32331454 CTTCGATCTGCTTCGCTGT-TGATCCAGGAAGGCAATATCTG-TAATTTTTAACCTACTCC
1 CTTCGATCTGCTTCACTATCAGATACAGGAAGGCAATATCTGCT-GTTTTCAACCTACTCC
32331513 ACTGCTGTAT
Statistics
Matches: 354, Mismatches: 50, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
350 8 0.02
351 289 0.82
352 55 0.16
353 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (353 bp):
CTTCGATCTGCTTCACTATCAGATACAGGAAGGCAATATCTGCTGTTTTCAACCTACTCCGCTAC
AACCCAAGGAGGCAAAGCTGGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTG
CTATCTTCAACCTGCTCTACTGTAACCCAGGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCACTG
TCAATACAGGAAAGCAAGATCTACTATCTATAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCT
AGTGTCTTCGATCTGCTTCACTGTCAATACAAGAAGACAAGATCTGCTATTTTCAACCTGCTCCA
CTGCAACCCAGGGAGGCAAGGCTAGTAT
Done.