Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43198478
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2088848 characters in sequence are not A, C, G, or T
File 99 of 131
Found at i:32888952 original size:30 final size:29
Alignment explanation
Indices: 32888885--32888972 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 29
32888875 GCTGGAGTGA
32888885 GTCTGCTGCTGGACGGGCTGATTGGATTG
1 GTCTGCTGCTGGACGGGCTGATTGGATTG
* *
32888914 GGCTGCTGCTGGA-GTGAGTCTG-TTGGGTTG
1 GTCTGCTGCTGGACG-G-G-CTGATTGGATTG
** *
32888944 GTCTGCTGCT-GTTGGGCTGACTGGATTG
1 GTCTGCTGCTGGACGGGCTGATTGGATTG
32888972 G
1 G
32888973 GTTGCGGCTG
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
27 3 0.06
28 9 0.19
29 15 0.31
30 18 0.38
31 3 0.06
ACGTcount: A:0.08, C:0.16, G:0.43, T:0.33
Consensus pattern (29 bp):
GTCTGCTGCTGGACGGGCTGATTGGATTG
Found at i:32889042 original size:24 final size:24
Alignment explanation
Indices: 32889015--32889063 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
32889005 GGTTGAACTC
*
32889015 GGTTCGGTGATACGGGTCAGGTCG
1 GGTTCAGTGATACGGGTCAGGTCG
* *
32889039 GGTTCAGTGGTACGGGTCGGGTCG
1 GGTTCAGTGATACGGGTCAGGTCG
32889063 G
1 G
32889064 ACCCGATTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.10, C:0.16, G:0.49, T:0.24
Consensus pattern (24 bp):
GGTTCAGTGATACGGGTCAGGTCG
Found at i:32889099 original size:21 final size:19
Alignment explanation
Indices: 32889073--32889143 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 19
32889063 GACCCGATTG
32889073 TTCTTTTTTATTATTCTTTTT
1 TTCTTTTTT-TT-TTCTTTTT
32889094 TTCTTTCTTTTTCTTCTTTTTCT
1 TTCTTT-TTTTT-TTC-TTTT-T
*
32889117 TTCTTTTTTCTTTCTTTTT
1 TTCTTTTTTTTTTCTTTTT
*
32889136 CTCTTTTT
1 TTCTTTTT
32889144 CTCTCTAACC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
19 8 0.18
20 4 0.09
21 14 0.32
22 11 0.25
23 7 0.16
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (19 bp):
TTCTTTTTTTTTTCTTTTT
Found at i:32889106 original size:10 final size:10
Alignment explanation
Indices: 32889091--32889145 Score: 80
Period size: 10 Copynumber: 5.7 Consensus size: 10
32889081 TATTATTCTT
32889091 TTTTTCTTTC
1 TTTTTCTTTC
32889101 TTTTTC-TTC
1 TTTTTCTTTC
32889110 TTTTTCTTTC
1 TTTTTCTTTC
32889120 TTTTTTCTTTC
1 -TTTTTCTTTC
32889131 TTTTTC--TC
1 TTTTTCTTTC
32889139 TTTTTCT
1 TTTTTCT
32889146 CTCTAACCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.19
9 9 0.21
10 15 0.36
11 10 0.24
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:32890185 original size:28 final size:28
Alignment explanation
Indices: 32890145--32890213 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
32890135 AAACTCTCAG
*
32890145 GGCCAAAATGTAATTTTAGAAAAA-GTGA
1 GGCCAAAATGTAATTTTAAAAAAATG-GA
*
32890173 GGCCAAAATGTAATTTTAAAAAAATGGG
1 GGCCAAAATGTAATTTTAAAAAAATGGA
32890201 GGCCAAAATGTAA
1 GGCCAAAATGTAA
32890214 ATAGTATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (28 bp):
GGCCAAAATGTAATTTTAAAAAAATGGA
Found at i:32890901 original size:75 final size:75
Alignment explanation
Indices: 32890775--32891147 Score: 453
Period size: 75 Copynumber: 5.0 Consensus size: 75
32890765 TAAAAGACTT
* * * * *
32890775 AAATTTAAAATACCTCGATGTGCGACCCGAAGCTCAACTTACCTCTCGGATTATGTGTTGATCTT
1 AAATTGAAAATACCTTGACGTGCGACCCGAAGCTCAACTCACCTCTCGGATTATGAGTTGATCTT
*
32890840 TGAAAAACAA
66 TGAAAAATAA
* * * * *
32890850 AAATTCAGAATACCTTGACGTGCGACCCGAAGTTCAACTCACCTCTTGGATTATGAGTTGATATT
1 AAATTGAAAATACCTTGACGTGCGACCCGAAGCTCAACTCACCTCTCGGATTATGAGTTGATCTT
*
32890915 TGAAAAATAG
66 TGAAAAATAA
* * *
32890925 AAATTGAAAATACCTTGGCGTGCGACCCGAAGCTCAACTCACCTCTCAGATTGTGAGTTGATCTT
1 AAATTGAAAATACCTTGACGTGCGACCCGAAGCTCAACTCACCTCTCGGATTATGAGTTGATCTT
*
32890990 TGAAAAATAG
66 TGAAAAATAA
* * * * *
32891000 AAATTGAAAATACCTCGGCGTGCGAGCC-AAGGCTCAACTCACGTCTCGAATTATGAGTTGATCT
1 AAATTGAAAATACCTTGACGTGCGACCCGAA-GCTCAACTCACCTCTCGGATTATGAGTTGATCT
32891064 TTGAAAAATAA
65 TTGAAAAATAA
* * * * * * *
32891075 AAATTGAAAATACC-TCAGCATGAGACCCGAGGCTCAACTCACCTCTCGGATTATAACTTGATTT
1 AAATTGAAAATACCTTGA-CGTGCGACCCGAAGCTCAACTCACCTCTCGGATTATGAGTTGA-TC
32891139 TTTGAAAAA
64 TTTGAAAAA
32891148 CGAAAAAGGA
Statistics
Matches: 256, Mismatches: 38, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
74 2 0.01
75 243 0.95
76 11 0.04
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (75 bp):
AAATTGAAAATACCTTGACGTGCGACCCGAAGCTCAACTCACCTCTCGGATTATGAGTTGATCTT
TGAAAAATAA
Found at i:32899415 original size:106 final size:106
Alignment explanation
Indices: 32899167--32899404 Score: 431
Period size: 106 Copynumber: 2.2 Consensus size: 106
32899157 AAAAATAATA
* *
32899167 AAATTTTCAAAATAAGGCAATATTTTACGTTTGGAGAATCGAGGAAACGTGCCCTAACGTGTTGG
1 AAATTTT-AAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGG
32899232 GTGTCGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCG
65 GTGTCGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCG
*
32899274 AAGTTTTAAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGG
1 AAATTTTAAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGG
*
32899339 TGTCGATTACTCGTTTAACGAAATAGTCGAATATCCTTTCG
66 TGTCGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCG
32899380 AAATTTTAAAATAAGGCAATGTTTT
1 AAATTTTAAAATAAGGCAATGTTTT
32899405 GTATTTGGAA
Statistics
Matches: 126, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
106 120 0.95
107 6 0.05
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (106 bp):
AAATTTTAAAATAAGGCAATGTTTTACGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGG
TGTCGATTACTCGTTTAACCAAATAGTCGAATATCCTTTCG
Found at i:32903925 original size:12 final size:12
Alignment explanation
Indices: 32903908--32903932 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32903898 CAAGGCAGGA
32903908 GCCCAACACAAG
1 GCCCAACACAAG
32903920 GCCCAACACAAG
1 GCCCAACACAAG
32903932 G
1 G
32903933 ACTAACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.40, G:0.20, T:0.00
Consensus pattern (12 bp):
GCCCAACACAAG
Found at i:32926789 original size:28 final size:28
Alignment explanation
Indices: 32926750--32926843 Score: 91
Period size: 28 Copynumber: 3.3 Consensus size: 28
32926740 GTGAGTCTGT
*
32926750 TGCTGCTGTTGGGTCTGCTAGGTTGGTC
1 TGCTGCTATTGGGTCTGCTAGGTTGGTC
** *
32926778 TGCTGCTATTGGG-CTGACTAAATTGGGC
1 TGCTGCTATTGGGTCTG-CTAGGTTGGTC
* * *
32926806 TGCTGGTGGAGTGAGTCTGCTAGGTTGGTC
1 TGCTGCT--ATTGGGTCTGCTAGGTTGGTC
32926836 TGCTGCTA
1 TGCTGCTA
32926844 GGCTGACTGG
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 3 0.06
28 27 0.53
30 18 0.35
31 3 0.06
ACGTcount: A:0.11, C:0.17, G:0.37, T:0.35
Consensus pattern (28 bp):
TGCTGCTATTGGGTCTGCTAGGTTGGTC
Found at i:32926884 original size:58 final size:56
Alignment explanation
Indices: 32926762--32926878 Score: 148
Period size: 55 Copynumber: 2.1 Consensus size: 56
32926752 CTGCTGTTGG
* *
32926762 GTCTGCTAGGTTGGTCTGCTGCTATTGGGCTGACTAAATTGGGCTGCTGGTGGAGTGA
1 GTCTGCTAGGTTGGTCTGCTGCTA-T-GGCTGACTAAATTGGGCTACTGGTAGAGTGA
** *
32926820 GTCTGCTAGGTTGGTCTGCTGCTA-GGCTGACTGGATTGGGCTAC-GGCTAGAGTGG
1 GTCTGCTAGGTTGGTCTGCTGCTATGGCTGACTAAATTGGGCTACTGG-TAGAGTGA
32926875 GTCT
1 GTCT
32926879 ACTGCTGCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 2 0.04
55 27 0.51
58 24 0.45
ACGTcount: A:0.13, C:0.17, G:0.38, T:0.32
Consensus pattern (56 bp):
GTCTGCTAGGTTGGTCTGCTGCTATGGCTGACTAAATTGGGCTACTGGTAGAGTGA
Found at i:32926929 original size:24 final size:24
Alignment explanation
Indices: 32926902--32926949 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
32926892 GTCAAACTTA
* *
32926902 GTTCGGTGATACGGGTCGGGTTGG
1 GTTCGGTGACACGGGTCGAGTTGG
*
32926926 GTTCGGTGGCACGGGTCGAGTTGG
1 GTTCGGTGACACGGGTCGAGTTGG
32926950 ACTCGACTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.08, C:0.15, G:0.50, T:0.27
Consensus pattern (24 bp):
GTTCGGTGACACGGGTCGAGTTGG
Found at i:32933488 original size:12 final size:12
Alignment explanation
Indices: 32933468--32933503 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
32933458 GCTATAGCAA
*
32933468 GCTTTCATGCAT
1 GCTTCCATGCAT
32933480 GCTTCCATGCAT
1 GCTTCCATGCAT
32933492 GCTTCCATGCAT
1 GCTTCCATGCAT
32933504 ACACGGACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.36
Consensus pattern (12 bp):
GCTTCCATGCAT
Found at i:32935537 original size:13 final size:13
Alignment explanation
Indices: 32935519--32935543 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32935509 AAAAAGGCGG
32935519 AGTGTTTATTTTT
1 AGTGTTTATTTTT
32935532 AGTGTTTATTTT
1 AGTGTTTATTTT
32935544 CTAATGTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (13 bp):
AGTGTTTATTTTT
Found at i:32935788 original size:45 final size:43
Alignment explanation
Indices: 32935668--32935792 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
32935658 TCTGCCAAAA
* * *
32935668 TTAGTGGCGTTTTTTAAAAAAGCGCCGCTAAAGGTAAGGGTTT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAGGTAAGGATCT
* *
32935711 TTAGCGGCG-TTTGTAGAAAAAGCGCCGCTAAAGGTTAGGATCT
1 TTAGCGGCGTTTTTTA-AAAAAGCGCCGCTAAAGGTAAGGATCT
*
32935754 TTAGCGGTGTTTATTTCAAAAAAGCGCCGCTAAAGGTAA
1 TTAGCGGCGTTT-TTT-AAAAAAGCGCCGCTAAAGGTAA
32935793 CGACGCTCTC
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 5 0.07
43 40 0.57
44 2 0.03
45 22 0.31
46 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAGGTAAGGATCT
Found at i:32947971 original size:761 final size:741
Alignment explanation
Indices: 32946862--32948364 Score: 2719
Period size: 761 Copynumber: 2.0 Consensus size: 741
32946852 TTTGTCCCTA
*
32946862 AATCAACATCAATCAAAATGATAGAAAAATCTTTCAAAAATACAAAATAAAAAATTTGAAGAAAA
1 AATCAACATCAATCAAAATGATAGAAAAACCTTTCAAAAATACAAAATAAAAAATTTGAAGAAAA
32946927 AAGATAGAATCATCAATAAATGTTTAATAAAACTAAAAAAAAAAAGTTTAATTTACCTAATAATC
66 AAGATAGAATCATCAATAAATGTTTAATAAAACTAAAAAAAAAAAGTTTAATTTACCTAATAATC
32946992 TATCTATCTGCAAAATTTTAAATTCTCTTTCCCTGAACCAACATCAATCAAAATGATAGAAAAAT
131 TATCTATCTGCAAAATTTTAAATTCTCTTTCCCTGAACCAACATCAATCAAAATGATAGAAAAAT
32947057 CTTTAAAAAATACAAAAAAAAATTAAAAAAAGTGCAAGGATAAGTATTTTAAAAAAAACAAAATC
196 CTTTAAAAAATACAAAAAAAAATTAAAAAAAGTGCAAGGATAAGTATTTTAAAAAAAACAAAATC
32947122 AAAATCATCCATAAATGTTTTATCTATAAGTGTCTTTGAAAATAAAATCTTTCAAAAAGAAAAAA
261 AAAATCATCCATAAATGTTTTATCTATAAGTGTCTTTGAAAATAAAATCTTTCAAAAAGAAAAAA
32947187 GAAAACCATACCTTAAACAAAAAGTGACGAACAAATATGCCTTCGTTCTCATGAGTACAACATAA
326 GAAAACCATACCTTAAACAAAAAGTGACGAACAAATATGCCTTCGTTCTCATGAGTACAACATAA
32947252 AATTTATCTTCTTTCTCAGGAGTACAGCTTTGAATTTATATACATATATTTTAGAGGAAAAGTAA
391 AATTTATCTTCTTTCTCAGGAGTACAGCTTTGAATTTATATACATATATTTTAGAGGAAAAGTAA
32947317 ATGTTAAGTAAGAAAGAAGCGTCACGAAAAGAGTGTTGAAAACTGCTGAGGGTAAATGGACAGTT
456 ATGTTAAGTAAGAAAGAAGCGTCACGAAAAGAGTGTTGAAAACTGCTGAGGGTAAATGGACAGTT
32947382 CATGAAAATGTGTGTGTTTTTTTGTGTTTATGCAGCTAGTGAACTTTTTCAATGTCTAGAGCTAC
521 CATGAAAATGTGTGTGTTTTTTTGTGTTTATGCAGCTAGTGAACTTTTTCAATGTCTAGAGCTAC
32947447 TTTTGTATGAAAACCTTTCATCTAAGTAGTATTTTTGTTTTCTCAAACAAAATTTTCTTTCTAAT
586 --TT-T-TG-------------T-A-T-G----TTTGTTTTCTCAAACAAAATTTTCTTTCTAAT
32947512 GTTGGTTGTTACATGCTGACTTTATTCTCGAGGAATAAATCTGAATTTTTGTAGCATAAATAATT
627 GTTGGTTGTTACATGCTGACTTTATTCTCGAGGAATAAATCTGAATTTTTGTAGCATAAATAATT
32947577 TGATGAAGGTAATGGTTGTGCTTTAATGACGCCCCCTCGACCAGCATTTC
692 TGATGAAGGTAATGGTTGTGCTTTAATGACGCCCCCTCGACCAGCATTTC
32947627 AATCAACATCAATCAAAATGATAGAAAAACCTTTCAAAAATACAAAATAAAAAATTTGAAGAAAA
1 AATCAACATCAATCAAAATGATAGAAAAACCTTTCAAAAATACAAAATAAAAAATTTGAAGAAAA
32947692 AAGATAGAATCATCAATAAATGTTTAATAAAACT-AAAAAAAAAAGTTTAATTTACCTAATAATC
66 AAGATAGAATCATCAATAAATGTTTAATAAAACTAAAAAAAAAAAGTTTAATTTACCTAATAATC
*
32947756 TATCTATCTGCAAATTTTTAAATTCTCTTTCCCTGAACCAACATCAATCAAAATGATAGAAAAAT
131 TATCTATCTGCAAAATTTTAAATTCTCTTTCCCTGAACCAACATCAATCAAAATGATAGAAAAAT
*
32947821 CTTT-AAAAATACAAAAATAAATT-AAAAAAGTGCAAGGACT-AGTATTTT-AAAAAAACAAAAT
196 CTTTAAAAAATACAAAAAAAAATTAAAAAAAGTGCAAGGA-TAAGTATTTTAAAAAAAACAAAAT
32947882 CAAAATCATCCATAAATGTTTTATCTATAAGTGTCTTTGAAAATAAAATCTTTCAAAAAGAAAAA
260 CAAAATCATCCATAAATGTTTTATCTATAAGTGTCTTTGAAAATAAAATCTTTCAAAAAGAAAAA
32947947 AGAAAACCATACCTTAAACAAAAAGTGACGAACAAATATGCCTTCGTTCTCATGAGTACAACATA
325 AGAAAACCATACCTTAAACAAAAAGTGACGAACAAATATGCCTTCGTTCTCATGAGTACAACATA
32948012 AAATTTATCTTCTTTCTCAGGAGTACAGCTTTGAATTTATATACATATATTTTAGAGGAAAAGTA
390 AAATTTATCTTCTTTCTCAGGAGTACAGCTTTGAATTTATATACATATATTTTAGAGGAAAAGTA
32948077 AATGTTAAGTAAGAAAGAAGCGTCACGAAAAGAGTGTTGAAAACTGCTGAGGGTAAATGGACAGT
455 AATGTTAAGTAAGAAAGAAGCGTCACGAAAAGAGTGTTGAAAACTGCTGAGGGTAAATGGACAGT
32948142 TCATGAAAATGTGTGTGTTTTTTTGTGTTTATGCAGCTAGTGAACTTTTTCAATGTCTAGAGCTA
520 TCATGAAAATGTGTGTGTTTTTTTGTGTTTATGCAGCTAGTGAACTTTTTCAATGTCTAGAGCTA
32948207 CTTTTGTATGTTTGTTTTCTCAAACAAAATTTTCTTTCTAATGTTGGTTGTTACATGCTGACTTT
585 CTTTTGTATGTTTGTTTTCTCAAACAAAATTTTCTTTCTAATGTTGGTTGTTACATGCTGACTTT
32948272 ATTCTCGAGGAATAAATCTGAATTTTTGTAGCATAAATAATTTGATGAAGGTAATGGTTGTGCTT
650 ATTCTCGAGGAATAAATCTGAATTTTTGTAGCATAAATAATTTGATGAAGGTAATGGTTGTGCTT
32948337 TAATGACGCCCCCTCGACCAGCATTTC
715 TAATGACGCCCCCTCGACCAGCATTTC
32948364 A
1 A
32948365 CTACATGAAT
Statistics
Matches: 734, Mismatches: 3, Indels: 30
0.96 0.00 0.04
Matches are distributed among these distances:
737 148 0.20
741 1 0.00
742 1 0.00
743 1 0.00
744 1 0.00
757 2 0.00
758 1 0.00
759 2 0.00
761 339 0.46
762 23 0.03
763 19 0.03
764 98 0.13
765 98 0.13
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.32
Consensus pattern (741 bp):
AATCAACATCAATCAAAATGATAGAAAAACCTTTCAAAAATACAAAATAAAAAATTTGAAGAAAA
AAGATAGAATCATCAATAAATGTTTAATAAAACTAAAAAAAAAAAGTTTAATTTACCTAATAATC
TATCTATCTGCAAAATTTTAAATTCTCTTTCCCTGAACCAACATCAATCAAAATGATAGAAAAAT
CTTTAAAAAATACAAAAAAAAATTAAAAAAAGTGCAAGGATAAGTATTTTAAAAAAAACAAAATC
AAAATCATCCATAAATGTTTTATCTATAAGTGTCTTTGAAAATAAAATCTTTCAAAAAGAAAAAA
GAAAACCATACCTTAAACAAAAAGTGACGAACAAATATGCCTTCGTTCTCATGAGTACAACATAA
AATTTATCTTCTTTCTCAGGAGTACAGCTTTGAATTTATATACATATATTTTAGAGGAAAAGTAA
ATGTTAAGTAAGAAAGAAGCGTCACGAAAAGAGTGTTGAAAACTGCTGAGGGTAAATGGACAGTT
CATGAAAATGTGTGTGTTTTTTTGTGTTTATGCAGCTAGTGAACTTTTTCAATGTCTAGAGCTAC
TTTTGTATGTTTGTTTTCTCAAACAAAATTTTCTTTCTAATGTTGGTTGTTACATGCTGACTTTA
TTCTCGAGGAATAAATCTGAATTTTTGTAGCATAAATAATTTGATGAAGGTAATGGTTGTGCTTT
AATGACGCCCCCTCGACCAGCATTTC
Found at i:32952378 original size:18 final size:18
Alignment explanation
Indices: 32952352--32952390 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
32952342 TTGCTTCACT
*
32952352 TTTTTTTTTTCTTTTTAA
1 TTTTGTTTTTCTTTTTAA
32952370 TTTTGTTTTTCTTTTTAA
1 TTTTGTTTTTCTTTTTAA
32952388 TTT
1 TTT
32952391 CACATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTGTTTTTCTTTTTAA
Found at i:32953541 original size:18 final size:18
Alignment explanation
Indices: 32953460--32953723 Score: 126
Period size: 18 Copynumber: 14.6 Consensus size: 18
32953450 ACAATTATTT
32953460 TTTTTGAAAACACGAAAAAA
1 TTTTTGAAAACACG--AAAA
* *
32953480 ATTTT-AAAACACGAGAA
1 TTTTTGAAAACACGAAAA
* * *
32953497 TTTTAG-AGACATGAAAA
1 TTTTTGAAAACACGAAAA
* *
32953514 TTCTTAAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* * * *
32953532 TTTTTGAAAAGATGACAT
1 TTTTTGAAAACACGAAAA
* **
32953550 TTTTTTAAAACACGGGAATT
1 TTTTTGAAAACAC--GAAAA
**
32953570 TTTTTGAAAACATTAAAA
1 TTTTTGAAAACACGAAAA
*
32953588 -TTTTG-AAACACCG-GAA
1 TTTTTGAAAACA-CGAAAA
32953604 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* **
32953622 TTTTTGAAACACAGGAATT
1 TTTTTGAAA-ACACGAAAA
* * *
32953641 TTTTTAAAAAAAAGAAAA
1 TTTTTGAAAACACGAAAA
* * * *
32953659 ATTTTGAAAA-ATGGAAT
1 TTTTTGAAAACACGAAAA
* **
32953676 TTTTTGAAAACATGGGAATT
1 TTTTTGAAAACA--CGAAAA
*
32953696 TTTTTGAAAACATGAAAA
1 TTTTTGAAAACACGAAAA
*
32953714 ATTTTGAAAA
1 TTTTTGAAAA
32953724 ACGGATTCTT
Statistics
Matches: 179, Mismatches: 53, Indels: 26
0.69 0.21 0.10
Matches are distributed among these distances:
16 7 0.04
17 42 0.23
18 75 0.42
19 22 0.12
20 33 0.18
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:32953571 original size:17 final size:17
Alignment explanation
Indices: 32953551--32953643 Score: 53
Period size: 17 Copynumber: 5.3 Consensus size: 17
32953541 AGATGACATT
32953551 TTTTTAAAACACGGGAA
1 TTTTTAAAACACGGGAA
***
32953568 TTTTTTTGAAAACA-TTAAA
1 --TTTTT-AAAACACGGGAA
* * *
32953587 ATTTTGAAACACCGGAA
1 TTTTTAAAACACGGGAA
**
32953604 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGGGAA
* *
32953622 TTTTTGAAACACAGGAA
1 TTTTTAAAACACGGGAA
32953639 TTTTT
1 TTTTT
32953644 TTAAAAAAAA
Statistics
Matches: 54, Mismatches: 17, Indels: 8
0.68 0.22 0.10
Matches are distributed among these distances:
16 5 0.09
17 23 0.43
18 13 0.24
19 7 0.13
20 6 0.11
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (17 bp):
TTTTTAAAACACGGGAA
Found at i:32953606 original size:72 final size:71
Alignment explanation
Indices: 32953530--32953707 Score: 187
Period size: 72 Copynumber: 2.4 Consensus size: 71
32953520 AAAACACGAA
* * * * **
32953530 AATTTTTGAAAAGATGACATTTTTTTAAAACACGGGAATTTTTTT-GAAAACATTAAAATTTTGA
1 AATTTTTGAAAACATGA-ATTTTTTTAAAACACAGGAATTTTTTTAAAAAAAAGAAAAATTTTGA
*
32953594 AACACCGG
65 AA-AACGG
* ** *
32953602 AATTTTTGAAAACACGAAAATTTTTGAAACACAGGAATTTTTTTAAAAAAAAGAAAAATTTTGAA
1 AATTTTTGAAAACATGAATTTTTTTAAAACACAGGAATTTTTTTAAAAAAAAGAAAAATTTTGAA
*
32953667 AAATGG
66 AAACGG
32953673 AATTTTTTGAAAACATGGGAATTTTTTTGAAAACA
1 AA-TTTTTGAAAACAT--GAATTTTTTT-AAAACA
32953708 TGAAAAATTT
Statistics
Matches: 85, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
71 28 0.33
72 44 0.52
74 8 0.09
75 5 0.06
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (71 bp):
AATTTTTGAAAACATGAATTTTTTTAAAACACAGGAATTTTTTTAAAAAAAAGAAAAATTTTGAA
AAACGG
Found at i:32953938 original size:18 final size:17
Alignment explanation
Indices: 32953905--32954006 Score: 71
Period size: 19 Copynumber: 5.5 Consensus size: 17
32953895 TTTGCCTTAT
*
32953905 TTTTTTGAAAAAACGAATA
1 TTTTTTG-AAACACGAA-A
32953924 TTTTTTGAAACACGAGAA
1 TTTTTTGAAACACGA-AA
* *
32953942 TAATTTTGAAGACATGAAA
1 T-TTTTTGAA-ACACGAAA
*
32953961 -TTTTCGAAACACGAGAA
1 TTTTTTGAAACACGA-AA
*
32953978 TTTTTTTCGAAAACACGGAA
1 -TTTTTT-G-AAACACGAAA
32953998 TTTTTTGAA
1 TTTTTTGAA
32954007 TATTTTTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
16 5 0.07
17 10 0.15
18 10 0.15
19 27 0.40
20 8 0.12
21 7 0.10
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (17 bp):
TTTTTTGAAACACGAAA
Found at i:32953942 original size:20 final size:20
Alignment explanation
Indices: 32953919--32954003 Score: 60
Period size: 20 Copynumber: 4.5 Consensus size: 20
32953909 TTGAAAAAAC
32953919 GAATATTTTTTGAAACACGA
1 GAATATTTTTTGAAACACGA
* *
32953939 GAATA-ATTTTGAAGACA--T
1 GAATATTTTTTGAA-ACACGA
*
32953957 GAA-A-TTTTCGAAACACGA
1 GAATATTTTTTGAAACACGA
32953975 GAAT-TTTTTTCGAAAACACG-
1 GAATATTTTTT-G-AAACACGA
32953995 GAAT-TTTTT
1 GAATATTTTT
32954004 GAATATTTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
16 3 0.06
17 7 0.13
18 6 0.12
19 11 0.21
20 18 0.35
21 7 0.13
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (20 bp):
GAATATTTTTTGAAACACGA
Found at i:32953948 original size:19 final size:17
Alignment explanation
Indices: 32953925--32953982 Score: 64
Period size: 17 Copynumber: 3.3 Consensus size: 17
32953915 AAACGAATAT
32953925 TTTTTGAAACACGAGAA
1 TTTTTGAAACACGAGAA
*
32953942 TAATTTTGAAGACATGA-AA
1 T--TTTTGAA-ACACGAGAA
*
32953961 TTTTCGAAACACGAGAA
1 TTTTTGAAACACGAGAA
32953978 TTTTT
1 TTTTT
32953983 TTCGAAAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 5 0.15
17 13 0.39
19 10 0.30
20 5 0.15
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (17 bp):
TTTTTGAAACACGAGAA
Found at i:32953993 original size:21 final size:19
Alignment explanation
Indices: 32953961--32954003 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
32953951 AGACATGAAA
32953961 TTTTCGAAACACGAGAATTT
1 TTTTCGAAACACG-GAATTT
32953981 TTTTCGAAAACACGGAATTT
1 TTTTCG-AAACACGGAATTT
32954001 TTT
1 TTT
32954004 GAATATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (19 bp):
TTTTCGAAACACGGAATTT
Found at i:32954352 original size:17 final size:17
Alignment explanation
Indices: 32954300--32954356 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
32954290 TTCTCTTTTC
* *
32954300 TTTTTTTAGCCT-TTGT
1 TTTTTTTGGCCTGCTGT
**
32954316 TTTTTTTGGCCTGCACT
1 TTTTTTTGGCCTGCTGT
**
32954333 TTTTTTTGGGTTGCTGT
1 TTTTTTTGGCCTGCTGT
32954350 TTTTTTT
1 TTTTTTT
32954357 CGGGACTGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
16 11 0.34
17 21 0.66
ACGTcount: A:0.04, C:0.12, G:0.18, T:0.67
Consensus pattern (17 bp):
TTTTTTTGGCCTGCTGT
Found at i:32954474 original size:13 final size:13
Alignment explanation
Indices: 32954456--32954547 Score: 57
Period size: 13 Copynumber: 7.2 Consensus size: 13
32954446 AAAAATTCTT
32954456 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
*
32954469 TTTTTCTTTCTTC
1 TTTTTCTTTTTTC
* **
32954482 TTCTTCTTCCTTC
1 TTTTTCTTTTTTC
32954495 --TTTCTTTCTTT-
1 TTTTTCTTT-TTTC
* *
32954506 TTCTTTCTTCTTCC
1 TT-TTTCTTTTTTC
* *
32954520 TCTTT-TTTATTC
1 TTTTTCTTTTTTC
*
32954532 TTCTTCTTTTTTC
1 TTTTTCTTTTTTC
32954545 TTT
1 TTT
32954548 CTTCCCTGTT
Statistics
Matches: 57, Mismatches: 16, Indels: 12
0.67 0.19 0.14
Matches are distributed among these distances:
11 5 0.09
12 9 0.16
13 36 0.63
14 7 0.12
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:32954478 original size:10 final size:10
Alignment explanation
Indices: 32954454--32954550 Score: 60
Period size: 10 Copynumber: 9.7 Consensus size: 10
32954444 AAAAAAATTC
32954454 TTTT-TTTCTT
1 TTTTCTTTC-T
32954464 TTTTCTTT-T
1 TTTTCTTTCT
32954473 TCTTTC-TTCT
1 T-TTTCTTTCT
* *
32954483 TCTTCTTCCT
1 TTTTCTTTCT
32954493 TCTTTCTTTCT
1 T-TTTCTTTCT
32954504 TTTTCTTTCT
1 TTTTCTTTCT
* *
32954514 TCTTC-CTCT
1 TTTTCTTTCT
32954523 TTTT-TATTCT
1 TTTTCT-TTCT
* *
32954533 TCTTCTTTTT
1 TTTTCTTTCT
32954543 TCTTTCTT
1 T-TTTCTT
32954551 CCCTGTTCAG
Statistics
Matches: 67, Mismatches: 11, Indels: 17
0.71 0.12 0.18
Matches are distributed among these distances:
9 13 0.19
10 37 0.55
11 17 0.25
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:32954484 original size:3 final size:3
Alignment explanation
Indices: 32954466--32954551 Score: 54
Period size: 3 Copynumber: 28.0 Consensus size: 3
32954456 TTTTTCTTTT
* *
32954466 TTC TTT TTC TTTC TTC TTC TTC TTCC TTC TTTC TTTC TTT TTC TTTC
1 TTC TTC TTC -TTC TTC TTC TTC TT-C TTC -TTC -TTC TTC TTC -TTC
* *
32954513 TTC TTC CTC TT- TT- TTA TTC TTC TTC TT- TT- TTC TTTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC
32954552 CCTGTTCAGC
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
2 8 0.12
3 42 0.61
4 19 0.28
ACGTcount: A:0.01, C:0.27, G:0.00, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:32954503 original size:34 final size:33
Alignment explanation
Indices: 32954459--32954551 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 33
32954449 AATTCTTTTT
*
32954459 TTCTTTTTTCTTTTTCTTTCTTCTTCTTCTTCC
1 TTCTTTTTTCTTTTTCTTTCTTCTTCCTCTTCC
**
32954492 TTCTTTCTTTCTTTTTCTTTCTTCTTCCTCTTTT
1 TTCTTT-TTTCTTTTTCTTTCTTCTTCCTCTTCC
*
32954526 TTATTCTTCTTCTTTTTTCTTTCTTC
1 TTCTT-TT-TTC-TTTTTCTTTCTTC
32954552 CCTGTTCAGC
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
33 6 0.12
34 29 0.56
35 4 0.08
36 13 0.25
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (33 bp):
TTCTTTTTTCTTTTTCTTTCTTCTTCCTCTTCC
Found at i:32954663 original size:20 final size:20
Alignment explanation
Indices: 32954630--32954667 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32954620 GACACTCCTC
* *
32954630 TCTTTTCTTTCTCTTTTTCT
1 TCTTTGCTTGCTCTTTTTCT
32954650 TCTTTGCTTGCTCTTTTT
1 TCTTTGCTTGCTCTTTTT
32954668 TTTTCATGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (20 bp):
TCTTTGCTTGCTCTTTTTCT
Found at i:32955050 original size:30 final size:30
Alignment explanation
Indices: 32955016--32955170 Score: 149
Period size: 30 Copynumber: 5.2 Consensus size: 30
32955006 GGGCAAAACA
* *
32955016 TAATTTTGAGAAAATTCAGGGGTTAAAATG
1 TAATTTTGAGAAAATTTAGGGGTCAAAATG
** * *
32955046 TAATTTCAAG-AAATTCAAGGGTCAAAATG
1 TAATTTTGAGAAAATTTAGGGGTCAAAATG
* * **
32955075 TAA-TTTCA-AAATGTTTAGGGGTTGAAATG
1 TAATTTTGAGAAA-ATTTAGGGGTCAAAATG
32955104 TAATTTTGA-AAAAGTTTAGGGGTCAAAATG
1 TAATTTTGAGAAAA-TTTAGGGGTCAAAATG
*
32955134 TAATTTT-AGAAAAGTTTAAGGGTCAAAATG
1 TAATTTTGAGAAAA-TTTAGGGGTCAAAATG
32955164 TAATTTT
1 TAATTTT
32955171 TTTAAACATA
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
28 5 0.05
29 36 0.35
30 63 0.61
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.35
Consensus pattern (30 bp):
TAATTTTGAGAAAATTTAGGGGTCAAAATG
Found at i:32955079 original size:59 final size:58
Alignment explanation
Indices: 32955016--32955169 Score: 168
Period size: 59 Copynumber: 2.6 Consensus size: 58
32955006 GGGCAAAACA
*
32955016 TAATTTTGAGAAAATTCAGGGGTTAAAATGTAATTTCAAGAAA-TTCAAGGGTCAAAATG
1 TAATTTT-AGAAAATTTAGGGGTTAAAATGTAATTTCAA-AAAGTTCAAGGGTCAAAATG
* * * * * *
32955075 TAATTTCA-AAATGTTTAGGGGTTGAAATGTAATTTTGAAAAAGTTTAGGGGTCAAAATG
1 TAATTTTAGAAA-ATTTAGGGGTTAAAATGTAA-TTTCAAAAAGTTCAAGGGTCAAAATG
* *
32955134 TAATTTTAGAAAAGTTTAAGGGTCAAAATGTAATTT
1 TAATTTTAGAAAA-TTTAGGGGTTAAAATGTAATTT
32955170 TTTTAAACAT
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
57 3 0.04
58 21 0.27
59 35 0.45
60 19 0.24
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.34
Consensus pattern (58 bp):
TAATTTTAGAAAATTTAGGGGTTAAAATGTAATTTCAAAAAGTTCAAGGGTCAAAATG
Found at i:32955584 original size:76 final size:76
Alignment explanation
Indices: 32955485--32955847 Score: 520
Period size: 76 Copynumber: 4.8 Consensus size: 76
32955475 NNNNNNNNNN
* *
32955485 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-ACAATTGAAAAATACCTCG
1 AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGA-AATTGAAAAATACCTCA
*
32955549 GCGTGTGACCCA
65 GCGTGTGACCCG
* * *
32955561 AGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAAATACCTCAG
*
32955626 CGTGTGACCTG
66 CGTGTGACCCG
32955637 AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAACAGAAATTG-AAAATACCTCA
1 AGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAAATACCTCA
32955701 GC--GTGACCCG
65 GCGTGTGACCCG
* *
32955711 AGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGAAAAA-AGAAATTTAAAAGAAATACCT
1 AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAAA-TT-GAA-AAATACCT
* * *
32955775 CGGCATGCGACCCG
63 CAGCGTGTGACCCG
* *
32955789 AGGCTCAATTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAAGAAATTGAAAAATA
1 AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAAATA
32955848 TAATTCTTGA
Statistics
Matches: 262, Mismatches: 16, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
72 5 0.02
73 13 0.05
74 38 0.15
75 1 0.00
76 127 0.48
77 23 0.09
78 50 0.19
79 5 0.02
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAAATACCTCAG
CGTGTGACCCG
Found at i:32956707 original size:13 final size:13
Alignment explanation
Indices: 32956689--32956731 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
32956679 TCTTAATTAA
32956689 TTTTTT-TCTTCTT
1 TTTTTTGTC-TCTT
32956702 TTTTTTGTCTCTT
1 TTTTTTGTCTCTT
*
32956715 TTTTTTGT-TGTT
1 TTTTTTGTCTCTT
32956727 TTTTT
1 TTTTT
32956732 AGGCATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 8 0.29
13 18 0.64
14 2 0.07
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (13 bp):
TTTTTTGTCTCTT
Found at i:32964170 original size:19 final size:19
Alignment explanation
Indices: 32964143--32964306 Score: 85
Period size: 19 Copynumber: 8.9 Consensus size: 19
32964133 CGATACGATC
*
32964143 AAAATACGAAAATTTTTTT
1 AAAACACGAAAATTTTTTT
*
32964162 AAAACACG--AATATTTTT
1 AAAACACGAAAATTTTTTT
* * *
32964179 GAAACA--ATTATTTTTTTT
1 AAAACACGA-AAATTTTTTT
32964197 GAAAACACGAAAATTTTTTT
1 -AAAACACGAAAATTTTTTT
*
32964217 AAAACACGAGAA---TTTT
1 AAAACACGAAAATTTTTTT
* * *
32964233 AGAGACATG-AAATTTTTTG
1 A-AAACACGAAAATTTTTTT
* * *
32964252 AAAAGATG-ACATTTTTTT
1 AAAACACGAAAATTTTTTT
**
32964270 AAAACACGGGAATTTTTTT
1 AAAACACGAAAATTTTTTT
* *
32964289 GAAAACATGAAGATTTTT
1 -AAAACACGAAAATTTTT
32964307 GAAACACGGG
Statistics
Matches: 108, Mismatches: 25, Indels: 23
0.69 0.16 0.15
Matches are distributed among these distances:
16 7 0.06
17 18 0.17
18 26 0.24
19 35 0.32
20 21 0.19
21 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (19 bp):
AAAACACGAAAATTTTTTT
Found at i:32964210 original size:55 final size:54
Alignment explanation
Indices: 32964143--32964402 Score: 186
Period size: 55 Copynumber: 4.7 Consensus size: 54
32964133 CGATACGATC
* * **
32964143 AAAATACGAAAATTTTTTTAAAACACGAATATTTTTGAAACAATTATTTTTTTTG
1 AAAACACGAAAATTTTTTTAAAACACGAATATTTTTGAAAC-ATGAAATTTTTTG
* *
32964198 AAAACACGAAAATTTTTTTAAAACACGAGA-ATTTTAGAGACATGAAATTTTTTG
1 AAAACACGAAAATTTTTTTAAAACACGA-ATATTTTTGAAACATGAAATTTTTTG
* * * *
32964252 AAAAGATG-ACATTTTTTTAAAACACGGGAATTTTTTTGAAAACATGAAGA-TTTTTG
1 AAAACACGAAAATTTTTTTAAAACAC--GAATATTTTTG-AAACATGAA-ATTTTTTG
** ** * * * * * *
32964308 -AAACACGGGAATTTTTGAAAAAAAAAGAAAAATTTTGAAAAATGGAATTTTTTG
1 AAAACACGAAAATTTTT-TTAAAACACGAATATTTTTGAAACATGAAATTTTTTG
* ** * * *
32964362 AAAACATGGGAATTTTTTTGAAAACATGAAAAATTTTGAAA
1 AAAACACGAAAATTTTTTT-AAAACACGAATATTTTTGAAA
32964403 AACGGATTCT
Statistics
Matches: 164, Mismatches: 30, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
53 17 0.10
54 30 0.18
55 90 0.55
56 21 0.13
57 6 0.04
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (54 bp):
AAAACACGAAAATTTTTTTAAAACACGAATATTTTTGAAACATGAAATTTTTTG
Found at i:32964284 original size:37 final size:36
Alignment explanation
Indices: 32964243--32964328 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 36
32964233 AGAGACATGA
* **
32964243 AATTTTTTGAAAAGATGACATTTTTTTAAAACACGGG
1 AATTTTTTGAAAACATGA-AGATTTTTAAAACACGGG
*
32964280 AATTTTTTTGAAAACATGAAGATTTTTGAAACACGGG
1 AA-TTTTTTGAAAACATGAAGATTTTTAAAACACGGG
32964317 AA-TTTTTGAAAA
1 AATTTTTTGAAAA
32964329 AAAAAGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
35 10 0.23
37 19 0.43
38 15 0.34
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (36 bp):
AATTTTTTGAAAACATGAAGATTTTTAAAACACGGG
Found at i:32964344 original size:37 final size:37
Alignment explanation
Indices: 32964266--32964365 Score: 94
Period size: 37 Copynumber: 2.7 Consensus size: 37
32964256 GATGACATTT
* *** * * * *
32964266 TTTTAAAACACGGGAATTTTTTTGAAAACATGAAGAT
1 TTTTGAAACACGGGAATTTTTGAAAAAAAAAGAAAAA
32964303 TTTTGAAACACGGGAATTTTTGAAAAAAAAAGAAAAA
1 TTTTGAAACACGGGAATTTTTGAAAAAAAAAGAAAAA
**
32964340 TTTTGAAA-AATGGAATTTTTTGAAAA
1 TTTTGAAACACGGGAA-TTTTTGAAAA
32964366 CATGGGAATT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
36 5 0.10
37 47 0.90
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.33
Consensus pattern (37 bp):
TTTTGAAACACGGGAATTTTTGAAAAAAAAAGAAAAA
Found at i:32964396 original size:21 final size:20
Alignment explanation
Indices: 32964190--32964398 Score: 90
Period size: 20 Copynumber: 11.2 Consensus size: 20
32964180 AAACAATTAT
*
32964190 TTTTTTTGAAAACACGAAAA
1 TTTTTTTGAAAACATGAAAA
* *
32964210 TTTTTTT-AAAACACGAGAA
1 TTTTTTTGAAAACATGAAAA
* *
32964229 --TTTTAG-AGACATG-AAA
1 TTTTTTTGAAAACATGAAAA
* *
32964245 -TTTTTTGAAAAGATG-ACA
1 TTTTTTTGAAAACATGAAAA
* **
32964263 TTTTTTT-AAAACACGGGAA
1 TTTTTTTGAAAACATGAAAA
*
32964282 TTTTTTTGAAAACATGAAGA
1 TTTTTTTGAAAACATGAAAA
* **
32964302 --TTTTTG-AAACACGGGAA
1 TTTTTTTGAAAACATGAAAA
*** * *
32964319 TTTTTGAAAAAAAAAGAAAA
1 TTTTTTTGAAAACATGAAAA
* *
32964339 --ATTTTGAAAA-ATG-GAA
1 TTTTTTTGAAAACATGAAAA
**
32964355 -TTTTTTGAAAACATGGGAA
1 TTTTTTTGAAAACATGAAAA
32964374 TTTTTTTGAAAACATGAAAAA
1 TTTTTTTGAAAACATG-AAAA
32964395 TTTT
1 TTTT
32964399 GAAAAACGGA
Statistics
Matches: 138, Mismatches: 37, Indels: 27
0.68 0.18 0.13
Matches are distributed among these distances:
16 4 0.03
17 32 0.23
18 28 0.20
19 31 0.22
20 37 0.27
21 6 0.04
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (20 bp):
TTTTTTTGAAAACATGAAAA
Found at i:32964625 original size:20 final size:20
Alignment explanation
Indices: 32964588--32964631 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
32964578 TTTACCGTAT
32964588 TTTTTTGAAAAAAGGAAT-A
1 TTTTTTGAAAAAAGGAATAA
* *
32964607 TTTTTTGAAACACGAGAATAA
1 TTTTTTGAAAAAAG-GAATAA
32964628 TTTT
1 TTTT
32964632 GAAGACATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 4 0.19
21 5 0.24
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (20 bp):
TTTTTTGAAAAAAGGAATAA
Found at i:32964657 original size:16 final size:17
Alignment explanation
Indices: 32964626--32964663 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
32964616 ACACGAGAAT
*
32964626 AATTTTGAAGACATGAA
1 AATTTCGAAGACATGAA
*
32964643 AATTTCGAA-ACATGAG
1 AATTTCGAAGACATGAA
32964659 AATTT
1 AATTT
32964664 TTTTCGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.32
Consensus pattern (17 bp):
AATTTCGAAGACATGAA
Found at i:32964685 original size:21 final size:20
Alignment explanation
Indices: 32964645--32964686 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32964635 GACATGAAAA
*
32964645 TTTCGAAACATGAGAATTTT
1 TTTCGAAACACGAGAATTTT
32964665 TTTCGAAAACACGA-AATTTT
1 TTTCG-AAACACGAGAATTTT
32964685 TT
1 TT
32964687 GAATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (20 bp):
TTTCGAAACACGAGAATTTT
Found at i:32965034 original size:20 final size:21
Alignment explanation
Indices: 32965005--32965044 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32964995 AAATTGAACT
*
32965005 TTTTTTTCTTCT-TTTTTTTC
1 TTTTTCTCTTCTCTTTTTTTC
32965025 TTTTTCTCTTCTCTTTTTTT
1 TTTTTCTCTTCTCTTTTTTT
32965045 TCTCTGCTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTCTCTTCTCTTTTTTTC
Found at i:32965314 original size:7 final size:7
Alignment explanation
Indices: 32965302--32965371 Score: 52
Period size: 7 Copynumber: 9.4 Consensus size: 7
32965292 AAAATATTAT
32965302 TTTTTTC
1 TTTTTTC
32965309 TTTTTTC
1 TTTTTTC
32965316 -TTTTTC
1 TTTTTTC
*
32965322 TTTCTTC
1 TTTTTTC
32965329 TTCTTCTTCC
1 TT-TT-TT-C
* *
32965339 TTCTTCC
1 TTTTTTC
*
32965346 TTTTTTT
1 TTTTTTC
32965353 TTCTTCTTC
1 TT-TT-TTC
32965362 TTTTTTC
1 TTTTTTC
32965369 TTT
1 TTT
32965372 CTTCCCCGTT
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
6 6 0.12
7 27 0.55
8 6 0.12
9 7 0.14
10 3 0.06
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTTC
Found at i:32965321 original size:13 final size:13
Alignment explanation
Indices: 32965303--32965371 Score: 68
Period size: 13 Copynumber: 5.2 Consensus size: 13
32965293 AAATATTATT
32965303 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
*
32965316 TTTTTCTTTCTTC
1 TTTTTCTTTTTTC
* **
32965329 TTCTTCTTCCTTC
1 TTTTTCTTTTTTC
32965342 TTCCTTT-TTTTTTC
1 TT--TTTCTTTTTTC
*
32965356 TTCTTCTTTTTTC
1 TTTTTCTTTTTTC
32965369 TTT
1 TTT
32965372 CTTCCCCGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
12 2 0.04
13 34 0.76
14 7 0.16
15 2 0.04
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:32965325 original size:10 final size:10
Alignment explanation
Indices: 32965306--32965370 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
32965296 TATTATTTTT
*
32965306 TTCTTTTTTC
1 TTCTTCTTTC
*
32965316 TTTTTCTTTC
1 TTCTTCTTTC
32965326 TTCTTC-TTC
1 TTCTTCTTTC
*
32965335 TTCCTTCTTCC
1 TT-CTTCTTTC
* *
32965346 TTTTTTTTTC
1 TTCTTCTTTC
*
32965356 TTCTTCTTTT
1 TTCTTCTTTC
32965366 TTCTT
1 TTCTT
32965371 TCTTCCCCGT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
9 5 0.12
10 34 0.79
11 4 0.09
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (10 bp):
TTCTTCTTTC
Found at i:32965358 original size:14 final size:15
Alignment explanation
Indices: 32965302--32965376 Score: 68
Period size: 16 Copynumber: 5.0 Consensus size: 15
32965292 AAAATATTAT
*
32965302 TTTTTTCTTT-TTTC
1 TTTTTTCTTTCTTCC
32965316 -TTTTTCTTTCTT-C
1 TTTTTTCTTTCTTCC
*
32965329 TTCTTCTTCCTTCTTCC
1 TT-TT-TTCTTTCTTCC
32965346 TTTTTT-TTTCTTCTTC
1 TTTTTTCTTTCTTC--C
32965362 TTTTTTCTTTCTTCC
1 TTTTTTCTTTCTTCC
32965377 CCGTTCAGCC
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
13 10 0.20
14 9 0.18
15 5 0.10
16 17 0.33
17 10 0.20
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTTCTTTCTTCC
Found at i:32965870 original size:30 final size:30
Alignment explanation
Indices: 32965820--32965982 Score: 172
Period size: 30 Copynumber: 5.5 Consensus size: 30
32965810 GAGCAAAACT
* *
32965820 TTTA-GGGTCGAAACGTAATTTTGAGAAAG
1 TTTAGGGGTCAAAATGTAATTTTGAGAAAG
*
32965849 TTTAGGGGTAAAAATGTAATTTTGAGAAAG
1 TTTAGGGGTCAAAATGTAATTTTGAGAAAG
* *
32965879 TTTAGGGATCAAAATGTAA-TTTCA-AAATG
1 TTTAGGGGTCAAAATGTAATTTTGAGAAA-G
** *
32965908 TTTAGGGGTTTAAATGTAATTTTGAAAAAG
1 TTTAGGGGTCAAAATGTAATTTTGAGAAAG
* *
32965938 TTTAGGGGGCAAAATGTAA-TTTAAGAAAAG
1 TTTAGGGGTCAAAATGTAATTTTGAG-AAAG
* *
32965968 TTTTGGGGTTAAAAT
1 TTTAGGGGTCAAAAT
32965983 AAATTTTTTT
Statistics
Matches: 111, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
28 3 0.03
29 29 0.26
30 76 0.68
31 3 0.03
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (30 bp):
TTTAGGGGTCAAAATGTAATTTTGAGAAAG
Found at i:32965911 original size:59 final size:60
Alignment explanation
Indices: 32965845--32965982 Score: 197
Period size: 59 Copynumber: 2.3 Consensus size: 60
32965835 TAATTTTGAG
* * * *
32965845 AAAGTTTAGGGGTAAAAATGTAATTTTGAGAAAGTTTAGGGATCAAAATGTAATTTCA-A
1 AAAGTTTAGGGGTTAAAATGTAATTTTGAAAAAGTTTAGGGAGCAAAATGTAATTTAAGA
* * *
32965904 AATGTTTAGGGGTTTAAATGTAATTTTGAAAAAGTTTAGGGGGCAAAATGTAATTTAAGA
1 AAAGTTTAGGGGTTAAAATGTAATTTTGAAAAAGTTTAGGGAGCAAAATGTAATTTAAGA
*
32965964 AAAGTTTTGGGGTTAAAAT
1 AAAGTTTAGGGGTTAAAAT
32965983 AAATTTTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
59 51 0.75
60 17 0.25
ACGTcount: A:0.40, C:0.02, G:0.24, T:0.34
Consensus pattern (60 bp):
AAAGTTTAGGGGTTAAAATGTAATTTTGAAAAAGTTTAGGGAGCAAAATGTAATTTAAGA
Found at i:32966947 original size:19 final size:20
Alignment explanation
Indices: 32966918--32966969 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
32966908 CACTTCGTGA
* *
32966918 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
32966937 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
32966957 AAATG-AATGCAAA
1 AAATGTAATGCAAA
32966970 AAGAGACGNN
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:32968032 original size:19 final size:20
Alignment explanation
Indices: 32968003--32968054 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
32967993 CACTTCGTGA
* *
32968003 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGTATG
*
32968022 CAATGTAATGCAAATGTATG
1 AAATGTAATGCAAATGTATG
32968042 AAATG-AATGCAAA
1 AAATGTAATGCAAA
32968055 AAAAGACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGTATG
Found at i:32969789 original size:127 final size:128
Alignment explanation
Indices: 32969616--32969902 Score: 515
Period size: 127 Copynumber: 2.2 Consensus size: 128
32969606 GATATCGAAG
*
32969616 CCCAGTAAGTTAGGGCACGATTTCTCGAATTTTCTAAATATAGAATAATTACCTTTA-TTTTTGA
1 CCCAGTAAGTTAGGGCACAATTTCTCGAATTTTCTAAATATAGAAT-ATTACCTTTATTTTTTGA
32969680 AATTTTATATGTTTGGAAATTTAAAAGGATATTTTGCTATTTAGGTTTAACGAGAAAATCGAGA
65 AATTTTATATGTTTGGAAATTTAAAAGGATATTTTGCTATTTAGGTTTAACGAGAAAATCGAGA
*
32969744 CCCAGTAAGGTAGGGCAC-ATTTCTCGAATTTTCTAAATATAGAATATTACCTTTATTTTTTGAA
1 CCCAGTAAGTTAGGGCACAATTTCTCGAATTTTCTAAATATAGAATATTACCTTTATTTTTTGAA
*
32969808 ATTTTATATGTTTGGAAATTTAAAAGGATATTTTTCTATTTAGGTTTAACGAGAAAATCGAGA
66 ATTTTATATGTTTGGAAATTTAAAAGGATATTTTGCTATTTAGGTTTAACGAGAAAATCGAGA
*
32969871 CCCAGTAAGTTAGGGTACAATTTCTCGAATTT
1 CCCAGTAAGTTAGGGCACAATTTCTCGAATTT
32969903 CCAAAATACA
Statistics
Matches: 153, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
126 10 0.07
127 113 0.74
128 30 0.20
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (128 bp):
CCCAGTAAGTTAGGGCACAATTTCTCGAATTTTCTAAATATAGAATATTACCTTTATTTTTTGAA
ATTTTATATGTTTGGAAATTTAAAAGGATATTTTGCTATTTAGGTTTAACGAGAAAATCGAGA
Found at i:32971856 original size:29 final size:32
Alignment explanation
Indices: 32971789--32971862 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 32
32971779 GATTTTCTTT
*
32971789 TATG-TATTATTTACTTTTAAGCTGTTTTAGA
1 TATGTTATTATTTACTTTCAAGCTGTTTTAGA
* * *
32971820 TTTATTATTATTTA-TTTCAAG-T-TTTTATA
1 TATGTTATTATTTACTTTCAAGCTGTTTTAGA
32971849 TATGTTATTCATTT
1 TATGTTATT-ATTT
32971863 CGAATATATG
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
29 13 0.37
30 5 0.14
31 8 0.23
32 9 0.26
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (32 bp):
TATGTTATTATTTACTTTCAAGCTGTTTTAGA
Found at i:32972526 original size:21 final size:22
Alignment explanation
Indices: 32972484--32972527 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
32972474 CCATGTACTA
* *
32972484 TTATTCCATGTTTATTATATTG
1 TTATTCCATGTTCATCATATTG
32972506 TTATTCCATG-TCATCATATTG
1 TTATTCCATGTTCATCATATTG
32972527 T
1 T
32972528 AAATTAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.55
Consensus pattern (22 bp):
TTATTCCATGTTCATCATATTG
Found at i:32978927 original size:32 final size:32
Alignment explanation
Indices: 32978886--32978954 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
32978876 GTACATGTCA
* ** *
32978886 CATGTTCCATACTCTAGTGTAGTGGGATCTCT
1 CATGTTCCATACTCTAATCCAATGGGATCTCT
32978918 CATGTTCCATACTCTAATCCAATGGGATCTCT
1 CATGTTCCATACTCTAATCCAATGGGATCTCT
32978950 CATGT
1 CATGT
32978955 ATGCTATGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (32 bp):
CATGTTCCATACTCTAATCCAATGGGATCTCT
Found at i:32983672 original size:12 final size:12
Alignment explanation
Indices: 32983650--32983678 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32983640 AACATCGCAG
32983650 GATAC-TCAGGT
1 GATACATCAGGT
32983661 GATACATCAGGT
1 GATACATCAGGT
32983673 GATACA
1 GATACA
32983679 CACTATGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (12 bp):
GATACATCAGGT
Found at i:32987441 original size:54 final size:54
Alignment explanation
Indices: 32987364--32987467 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
32987354 CGGTGAAGTC
* *
32987364 ATTATGAGAGAGATCAACCATTTGCAAGTTGGAGAAGGAAAATTTGGTTGAGTA
1 ATTATGAGAGAGATCAACCATTTGAAAGTTGGAGAAGGAAAAATTGGTTGAGTA
* * * *
32987418 ATTATGAGAGAGATCAGA-GATTTGAAATTTGGGGAATGAAAAATTGGTTG
1 ATTATGAGAGAGATCA-ACCATTTGAAAGTTGGAGAAGGAAAAATTGGTTG
32987468 TGTCTGGAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 42 0.98
55 1 0.02
ACGTcount: A:0.38, C:0.05, G:0.29, T:0.29
Consensus pattern (54 bp):
ATTATGAGAGAGATCAACCATTTGAAAGTTGGAGAAGGAAAAATTGGTTGAGTA
Found at i:32988415 original size:4 final size:4
Alignment explanation
Indices: 32988406--32988440 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
32988396 ACTAAAAGTA
32988406 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
32988441 AATAGATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:32990453 original size:34 final size:35
Alignment explanation
Indices: 32990409--32990475 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
32990399 CAGTAAAATA
*
32990409 TTTTCCGTAAAATAATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATAATTTACGGGAAAATATTTTAC
* * *
32990443 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATAATTTACGGGAAAATATTTT
32990476 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACGGGAAAATATTTTAC
Found at i:32999723 original size:24 final size:23
Alignment explanation
Indices: 32999696--32999741 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
32999686 ATTAATTGAA
*
32999696 GGGAAAAGTAAATTATAAATTTTT
1 GGGAAAAGTAAAATAT-AATTTTT
*
32999720 GGGAAAATTAAAATATAATTTT
1 GGGAAAAGTAAAATATAATTTT
32999742 ATTGTGGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (23 bp):
GGGAAAAGTAAAATATAATTTTT
Found at i:33011387 original size:15 final size:14
Alignment explanation
Indices: 33011355--33011405 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 14
33011345 TTTAAGAAAT
33011355 AATTTT-AAATTAA
1 AATTTTAAAATTAA
*
33011368 AATTTTAAAACTTGA
1 AATTTTAAAA-TTAA
33011383 AATTTTAAAA-T-A
1 AATTTTAAAATTAA
*
33011395 ATTTTTAAAAT
1 AATTTTAAAAT
33011406 GCAACATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 10 0.30
13 7 0.21
14 3 0.09
15 13 0.39
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (14 bp):
AATTTTAAAATTAA
Found at i:33013993 original size:178 final size:179
Alignment explanation
Indices: 33013681--33014039 Score: 711
Period size: 178 Copynumber: 2.0 Consensus size: 179
33013671 TAAGATTTAA
33013681 ATTTAAAATATTATCAATTTTATTGTTTCAACTAATATATTTTATTATTATATTTATTTTTTTAA
1 ATTTAAAATATTATCAATTTTATTGTTTCAACTAATATATTTTATTATTATATTTATTTTTTTAA
33013746 AATTTTTGTTAAATAAAATTTTCACCCTATGATCATAATCTAATATAAATAGTACAGGTTGGAGT
66 AATTTTTGTTAAATAAAATTTTCACCCTATGATCATAATCTAATATAAATAGTACAGGTTGGAGT
33013811 GAAAGAGGTAGGTTGGATCTTAGGCAAGCCTCTAGTTTCACGAGGTTAG
131 GAAAGAGGTAGGTTGGATCTTAGGCAAGCCTCTAGTTTCACGAGGTTAG
33013860 ATTTAAAATATT-TCAATTTTATTGTTTCAACTAATATATTTTATTATTATATTTATTTTTTTAA
1 ATTTAAAATATTATCAATTTTATTGTTTCAACTAATATATTTTATTATTATATTTATTTTTTTAA
33013924 AATTTTTGTTAAATAAAATTTTCACCCTATGATCATAATCTAATATAAATAGTACAGGTTGGAGT
66 AATTTTTGTTAAATAAAATTTTCACCCTATGATCATAATCTAATATAAATAGTACAGGTTGGAGT
33013989 GAAAGAGGTAGGTTGGATCTTAGGCAAGCCTCTAGTTTCACGAGGTTAG
131 GAAAGAGGTAGGTTGGATCTTAGGCAAGCCTCTAGTTTCACGAGGTTAG
33014038 AT
1 AT
33014040 ATTTCGTCTC
Statistics
Matches: 180, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
178 168 0.93
179 12 0.07
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (179 bp):
ATTTAAAATATTATCAATTTTATTGTTTCAACTAATATATTTTATTATTATATTTATTTTTTTAA
AATTTTTGTTAAATAAAATTTTCACCCTATGATCATAATCTAATATAAATAGTACAGGTTGGAGT
GAAAGAGGTAGGTTGGATCTTAGGCAAGCCTCTAGTTTCACGAGGTTAG
Found at i:33015210 original size:13 final size:13
Alignment explanation
Indices: 33015179--33015203 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33015169 TTTAAAAAAT
33015179 ATAAATAAGTTTA
1 ATAAATAAGTTTA
33015192 ATAAATAAGTTT
1 ATAAATAAGTTT
33015204 TGAAAATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
ATAAATAAGTTTA
Found at i:33021180 original size:14 final size:15
Alignment explanation
Indices: 33021156--33021185 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
33021146 NNAATTATTT
33021156 TTAATTATAATTTTA
1 TTAATTATAATTTTA
33021171 TTAA-TATAATTTTA
1 TTAATTATAATTTTA
33021185 T
1 T
33021186 ATTATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTAATTATAATTTTA
Found at i:33021852 original size:16 final size:15
Alignment explanation
Indices: 33021827--33021856 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
33021817 ATTGACCTTG
33021827 TTTTTTTTTTTTTTC
1 TTTTTTTTTTTTTTC
33021842 TTTTTTCTTTTTTTT
1 TTTTTT-TTTTTTTT
33021857 AACGGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (15 bp):
TTTTTTTTTTTTTTC
Found at i:33040325 original size:21 final size:20
Alignment explanation
Indices: 33040307--33040350 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 20
33040297 AATTTTAATT
33040307 TTATTAGTTTTAATATTAAAAA
1 TTATTA-TTTTAATATT-AAAA
33040329 TTATTATTTTAATAATTAAAA
1 TTATTATTTTAAT-ATTAAAA
33040350 T
1 T
33040351 ATAAATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TTATTATTTTAATATTAAAA
Found at i:33040346 original size:22 final size:22
Alignment explanation
Indices: 33040307--33040349 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
33040297 AATTTTAATT
33040307 TTATTAGTTTTAATATTAAAAA
1 TTATTAGTTTTAATATTAAAAA
33040329 TTATTA-TTTTAATAATTAAAA
1 TTATTAGTTTTAAT-ATTAAAA
33040350 TATAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTATTAGTTTTAATATTAAAAA
Found at i:33041043 original size:17 final size:17
Alignment explanation
Indices: 33041021--33041084 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
33041011 AATCTTAGAG
33041021 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
33041038 TTCTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--AG-C
33041057 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
33041074 TTTTAATTGTA
1 TTCTAATTGTA
33041085 GCCATTCATA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 1 0.03
17 21 0.55
18 4 0.11
19 11 0.29
20 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:33041060 original size:36 final size:36
Alignment explanation
Indices: 33041013--33041083 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
33041003 GATTATGTAA
33041013 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
*
33041049 TCTTAGAGTTCTAATTGTATACAGCTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGT
33041084 AGCCATTCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:33041062 original size:19 final size:19
Alignment explanation
Indices: 33041012--33041068 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
33041002 TGATTATGTA
33041012 ATCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
*
33041031 ATAC--AG-CTTCTAATTGT
1 AT-CTTAGAGTTCTAATTGT
*
33041048 GTCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
33041067 AT
1 AT
33041069 ACAGCTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.03
17 11 0.37
18 4 0.13
19 13 0.43
20 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (19 bp):
ATCTTAGAGTTCTAATTGT
Found at i:33043091 original size:22 final size:23
Alignment explanation
Indices: 33043065--33043109 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
33043055 ATTTTCAGTA
33043065 TGATTT-TAATTATTAAAAAAAT
1 TGATTTATAATTATTAAAAAAAT
*
33043087 TGATTTAATAATTTTTAAAAAAA
1 TGATTT-ATAATTATTAAAAAAA
33043110 AATCTTACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
24 14 0.70
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (23 bp):
TGATTTATAATTATTAAAAAAAT
Found at i:33044530 original size:119 final size:120
Alignment explanation
Indices: 33044311--33044531 Score: 284
Period size: 119 Copynumber: 1.8 Consensus size: 120
33044301 TTTACTAATA
* * **
33044311 AGTATACTTGTGTGTCTTTTGATATCCGTTTTCTTTCGTAAGTTTAGGAACAGATATGAGTTTCT
1 AGTATACTTGTGTATCATTTGATATCCGTTTTCTTTCG-AAGTTTAGGAACAGATACAAGTTTCT
* * *
33044376 AATGCATCTATGTGTACTTTGTTAAGGTGTCTCGATTAGCCTTTCTTTGTCTTGTG
65 AATGCATCTATGTATACATTGTTAAGATGTCTCGATTAGCCTTTCTTTGTCTTGTG
* * * * *
33044432 AGTATACTTGTGTATCATTTGGTTTCC-TCTTTCTTTCG-AGTTTAGGAACTGATGCAAGTTTTT
1 AGTATACTTGTGTATCATTTGATATCCGT-TTTCTTTCGAAGTTTAGGAACAGATACAAGTTTCT
* *
33044495 AATGCATCTATGTATGCATTGTTAAGATGTTTCGATT
65 AATGCATCTATGTATACATTGTTAAGATGTCTCGATT
33044532 GCTTTGGAAG
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
119 52 0.61
120 1 0.01
121 32 0.38
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.46
Consensus pattern (120 bp):
AGTATACTTGTGTATCATTTGATATCCGTTTTCTTTCGAAGTTTAGGAACAGATACAAGTTTCTA
ATGCATCTATGTATACATTGTTAAGATGTCTCGATTAGCCTTTCTTTGTCTTGTG
Found at i:33046138 original size:26 final size:25
Alignment explanation
Indices: 33046109--33046178 Score: 61
Period size: 26 Copynumber: 2.7 Consensus size: 25
33046099 TGAATTTAAT
**
33046109 TTTATAATAAATTTTAATTTTAAATA
1 TTTATAATAAATTTTAATAATAAA-A
* *
33046135 TTTAGATTAAATATTTAATAATAAAA
1 TTTATAATAAAT-TTTAATAATAAAA
33046161 TTTAATTAAT-AATTTTAA
1 TTT-A-TAATAAATTTTAA
33046179 AATTTATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
26 19 0.54
27 14 0.40
28 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (25 bp):
TTTATAATAAATTTTAATAATAAAA
Found at i:33046187 original size:15 final size:15
Alignment explanation
Indices: 33046164--33046193 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33046154 AATAAAATTT
33046164 AATTAATAATTTTAA
1 AATTAATAATTTTAA
*
33046179 AATTTATAATTTTAA
1 AATTAATAATTTTAA
33046194 TTGAAAGCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATTAATAATTTTAA
Found at i:33056452 original size:3 final size:3
Alignment explanation
Indices: 33056444--33056473 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
33056434 TCACTTTTCC
33056444 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
33056474 GAAACTACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:33061575 original size:29 final size:30
Alignment explanation
Indices: 33061518--33061576 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
33061508 GTATTAACTT
* *
33061518 AAATATTTATAATTTTTAAAGGGTTAATTA
1 AAATATTTATAATTTTTAAAGAGTCAATTA
* *
33061548 AAAT-TTTATCATTTTTAATGAGTCAATTA
1 AAATATTTATAATTTTTAAAGAGTCAATTA
33061577 TTATTTCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.47
Consensus pattern (30 bp):
AAATATTTATAATTTTTAAAGAGTCAATTA
Found at i:33062030 original size:17 final size:17
Alignment explanation
Indices: 33062008--33062050 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
33061998 GACTTGAAAG
33062008 AAATGGTTTTCACTAAA
1 AAATGGTTTTCACTAAA
33062025 AAATGGTTTTCACTAAA
1 AAATGGTTTTCACTAAA
33062042 AAATGGTTT
1 AAATGGTTT
33062051 AAAGGAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (17 bp):
AAATGGTTTTCACTAAA
Found at i:33063273 original size:165 final size:163
Alignment explanation
Indices: 33062994--33063320 Score: 627
Period size: 165 Copynumber: 2.0 Consensus size: 163
33062984 TTACCAAACA
33062994 ATTTTTAAATATAAATTCAGCACTTATAAAATTTAGTATTAAAAATTCAATACTTAATTTTTTAA
1 ATTTTTAAATATAAATTCAGCACTTATAAAATTTAGTATTAAAAATTCAATACTTAATTTTTTAA
33063059 TTTATCAAACACACCCTTAGTCTCTAAATTTTTTTTCCATATTAGTCTTAGAACTTGGTTATTTT
66 TTTATCAAACACACCCTTAGTCTCTAAATTTTTTTTCCATATTAGTCTTAGAACTTGGTTATTTT
33063124 TCCTGATTTGGTTCCTAAATTTGGAATATTCATTT
131 TCCTGATTTGGTTCCTAAATTTGG-AT-TTCATTT
*
33063159 ATTTTTTAATATAAATTCAGCACTTATAAAATTTAGTATTAAAAATTCAATACTTAATTTTTTAA
1 ATTTTTAAATATAAATTCAGCACTTATAAAATTTAGTATTAAAAATTCAATACTTAATTTTTTAA
33063224 TTTATCAAACACACCCTTAGTCTCTAAATTTTTTTTCCATATTAGTCTTAGAACTTGGTTATTTT
66 TTTATCAAACACACCCTTAGTCTCTAAATTTTTTTTCCATATTAGTCTTAGAACTTGGTTATTTT
33063289 TCCTGATTTGGTTCCTAAATTTGGATTTCATT
131 TCCTGATTTGGTTCCTAAATTTGGATTTCATT
33063321 CAGAAGTGAT
Statistics
Matches: 161, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
163 6 0.04
164 2 0.01
165 153 0.95
ACGTcount: A:0.32, C:0.13, G:0.07, T:0.47
Consensus pattern (163 bp):
ATTTTTAAATATAAATTCAGCACTTATAAAATTTAGTATTAAAAATTCAATACTTAATTTTTTAA
TTTATCAAACACACCCTTAGTCTCTAAATTTTTTTTCCATATTAGTCTTAGAACTTGGTTATTTT
TCCTGATTTGGTTCCTAAATTTGGATTTCATTT
Found at i:33067355 original size:17 final size:18
Alignment explanation
Indices: 33067323--33067356 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
33067313 AATTTCTTTT
33067323 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
33067341 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
33067357 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:33067788 original size:18 final size:19
Alignment explanation
Indices: 33067765--33067809 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
33067755 CCTTCATTTC
33067765 TTTCTTT-TATTCTTTTA-G
1 TTTCTTTAT-TTCTTTTATG
33067783 TTTCTTTATTTCTTTTATG
1 TTTCTTTATTTCTTTTATG
*
33067802 TTTATTTA
1 TTTCTTTA
33067810 CTTTATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.73
Consensus pattern (19 bp):
TTTCTTTATTTCTTTTATG
Found at i:33071551 original size:14 final size:14
Alignment explanation
Indices: 33071528--33071557 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33071518 ATGGAATCCC
33071528 TACATACATACATA
1 TACATACATACATA
*
33071542 TACATGCATACATA
1 TACATACATACATA
33071556 TA
1 TA
33071558 TATAAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (14 bp):
TACATACATACATA
Found at i:33073057 original size:31 final size:31
Alignment explanation
Indices: 33073014--33073083 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
33073004 TAATGCAATG
*
33073014 TTTGGTAATTGAGTTT-ATTTTCAAAGTTCAA
1 TTTGGTATTTGAGTTTGATTTT-AAAGTTCAA
* *
33073045 TTTGGTATTTGAGTTTGATTTTAATGTTTAA
1 TTTGGTATTTGAGTTTGATTTTAAAGTTCAA
33073076 TTTGGTAT
1 TTTGGTAT
33073084 CCAGATCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 30 0.86
32 5 0.14
ACGTcount: A:0.24, C:0.03, G:0.19, T:0.54
Consensus pattern (31 bp):
TTTGGTATTTGAGTTTGATTTTAAAGTTCAA
Found at i:33080859 original size:24 final size:23
Alignment explanation
Indices: 33080822--33080870 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 23
33080812 CTTTTGCAGC
*
33080822 ATACTTATGCAGACACACTTAAG
1 ATACTTATACAGACACACTTAAG
33080845 ATACTATATACAGACACACTTAAG
1 ATACT-TATACAGACACACTTAAG
33080869 AT
1 AT
33080871 GCTCGTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (23 bp):
ATACTTATACAGACACACTTAAG
Found at i:33082200 original size:29 final size:30
Alignment explanation
Indices: 33082167--33082226 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33082157 TAATTTTAGT
* * *
33082167 ATTTAGTCCATATA-TTTTTATTTTTCAAA
1 ATTTAATCCATATACTTTTCAATTTTCAAA
*
33082196 ATTTAATCCATTTACTTTTCAATTTTCAAA
1 ATTTAATCCATATACTTTTCAATTTTCAAA
33082226 A
1 A
33082227 ATCAGATCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.52
Consensus pattern (30 bp):
ATTTAATCCATATACTTTTCAATTTTCAAA
Found at i:33091876 original size:21 final size:22
Alignment explanation
Indices: 33091852--33091893 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
33091842 GATCAGAACC
33091852 TATAATA-AAATTGATAAAAAA
1 TATAATATAAATTGATAAAAAA
*
33091873 TATAATATTAATTTGATAAAA
1 TATAATA-TAAATTGATAAAA
33091894 GAATCAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
23 11 0.61
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (22 bp):
TATAATATAAATTGATAAAAAA
Found at i:33093425 original size:99 final size:100
Alignment explanation
Indices: 33093310--33093510 Score: 395
Period size: 99 Copynumber: 2.0 Consensus size: 100
33093300 AAATTACACT
33093310 TTAACTCCCCTTAAAATGATACAAATTTAATTTAATATTTAAAAATTATAAAAATTTAAGCTATT
1 TTAACTCCCCTTAAAATGATACAAATTTAATTTAATATTTAAAAATTATAAAAATTTAAGCTATT
33093375 AAAATGTTAAAATTACTTTTTTTACTGTTGTAAAA
66 AAAATGTTAAAATTACTTTTTTTACTGTTGTAAAA
33093410 TTAACTCCCC-TAAAATGATACAAATTTAATTTAATATTTAAAAATTATAAAAATTTAAGCTATT
1 TTAACTCCCCTTAAAATGATACAAATTTAATTTAATATTTAAAAATTATAAAAATTTAAGCTATT
33093474 AAAATGTTAAAATTACTTTTTTTACTGTTGTAAAA
66 AAAATGTTAAAATTACTTTTTTTACTGTTGTAAAA
33093509 TT
1 TT
33093511 TACGATTTAA
Statistics
Matches: 101, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 91 0.90
100 10 0.10
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (100 bp):
TTAACTCCCCTTAAAATGATACAAATTTAATTTAATATTTAAAAATTATAAAAATTTAAGCTATT
AAAATGTTAAAATTACTTTTTTTACTGTTGTAAAA
Found at i:33102653 original size:19 final size:19
Alignment explanation
Indices: 33102629--33102666 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33102619 ATAAGAGAGA
33102629 GTAGCTATAAGATTTTTTT
1 GTAGCTATAAGATTTTTTT
33102648 GTAGCTATAAGATTTTTTT
1 GTAGCTATAAGATTTTTTT
33102667 TTCTTCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (19 bp):
GTAGCTATAAGATTTTTTT
Found at i:33117945 original size:15 final size:16
Alignment explanation
Indices: 33117919--33117949 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
33117909 TTGAAAAACA
33117919 TATATGTGAATGTATG
1 TATATGTGAATGTATG
33117935 TATATGT-AATGTATG
1 TATATGTGAATGTATG
33117950 CTGTCCTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (16 bp):
TATATGTGAATGTATG
Found at i:33121444 original size:38 final size:35
Alignment explanation
Indices: 33121398--33121485 Score: 97
Period size: 38 Copynumber: 2.4 Consensus size: 35
33121388 TACACGTCTG
* *
33121398 TTAAAAAATATTTTTTAAATTCTGTTAAAAATTTTAA
1 TTAAAAAATATTTTTTAAAAT-T-TTAAAAATATTAA
*
33121435 TGTACAAAATATATTTTTTAAAATTTTAAATATATTAA
1 T-TA-AAAA-ATATTTTTTAAAATTTTAAAAATATTAA
33121473 TT-AAAAATATTTT
1 TTAAAAAATATTTT
33121486 CAAAATATTG
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
34 7 0.16
35 4 0.09
37 2 0.04
38 14 0.31
39 5 0.11
40 13 0.29
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (35 bp):
TTAAAAAATATTTTTTAAAATTTTAAAAATATTAA
Found at i:33141195 original size:29 final size:29
Alignment explanation
Indices: 33141157--33141231 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
33141147 CTATTTGTGC
33141157 ATTT-AAAATTTAATTTTTTTA--TTTTT
1 ATTTAAAAATTTAATTTTTTTACTTTTTT
* *
33141183 ATTTTAAGAAATTTAATCTATTTACTTTTTT
1 A-TTTAA-AAATTTAATTTTTTTACTTTTTT
*
33141214 ATTTAAAAATGTAATTTT
1 ATTTAAAAATTTAATTTT
33141232 AATTCTTAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 3 0.08
28 1 0.03
29 23 0.59
30 5 0.13
31 6 0.15
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (29 bp):
ATTTAAAAATTTAATTTTTTTACTTTTTT
Found at i:33142770 original size:17 final size:17
Alignment explanation
Indices: 33142738--33142769 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33142728 ATTGATCAAT
33142738 TTTTTTATATATTTTTA
1 TTTTTTATATATTTTTA
33142755 TTTTTTATA-ATTTTT
1 TTTTTTATATATTTTT
33142770 TTAATACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTATATATTTTTA
Found at i:33158420 original size:115 final size:115
Alignment explanation
Indices: 33158031--33158394 Score: 639
Period size: 115 Copynumber: 3.2 Consensus size: 115
33158021 TTTGGGTGCA
*
33158031 GGCCAGCACCCAGTACACAGTACACG---AAA-A-AAAATTATTTTTTTCGTGTCAGAATCAGAT
1 GGCCGGCACCCAGTACACAGTACACGAAAAAATATAAAATT-TTTTTTTCGTGTCAG-ATCAGAT
33158091 AAAAAAATACGAAAAAAATAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAAT
64 AAAAAAATACGAAAAAAATAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAAT
33158143 GGCCGGCACCCAGTACACAGTACACGAAAAAATATAAAATTTTTTTTTCGTGTCAGATCAGATAA
1 GGCCGGCACCCAGTACACAGTACACGAAAAAATATAAAATTTTTTTTTCGTGTCAGATCAGATAA
33158208 AAAAATACGAAAAAAATAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAAT
66 AAAAATACGAAAAAAATAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAAT
*
33158258 GGCCGGCACCCCGTACACAGTACACGAAAAAATATAAAATTTTTTTTTCGTGTCAGATCAGATAA
1 GGCCGGCACCCAGTACACAGTACACGAAAAAATATAAAATTTTTTTTTCGTGTCAGATCAGATAA
33158323 AAAAATACGAAAAAAATAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAAT
66 AAAAATACGAAAAAAATAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAAT
**
33158373 GGCCCTCACCCAGTACACAGTA
1 GGCCGGCACCCAGTACACAGTA
33158395 AAAAGAAAAA
Statistics
Matches: 242, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
112 25 0.10
115 195 0.81
116 16 0.07
117 6 0.02
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (115 bp):
GGCCGGCACCCAGTACACAGTACACGAAAAAATATAAAATTTTTTTTTCGTGTCAGATCAGATAA
AAAAATACGAAAAAAATAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAAT
Found at i:33158710 original size:109 final size:110
Alignment explanation
Indices: 33158407--33158754 Score: 592
Period size: 111 Copynumber: 3.1 Consensus size: 110
33158397 AAGAAAAATT
*
33158407 TTTTTTTTATTTTTTTCGTA-TTTTTTATCTGATTTTGACACGAAAAAAAAATAATTTTTTTTTC
1 TTTTTTTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAAA-AATTTTTTTTTC
33158471 GTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACTCAAA
65 GTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACTCAAA
*
33158517 TTTTTTTTATTTTTTTCGTATTTTTTTATCTGACTCTGACACGAAAAAAAATAAATTTTTTTTTC
1 TTTTTTTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAA-AAATTTTTTTTTC
33158582 GTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACTCAAA
65 GTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACTCAAA
*
33158628 TTTTTTTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACG-AAAAAAAAAATTTTTTTTTTG
1 TTTTTTTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAAAAATTTTTTTTTCG
* *
33158692 TGCACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAA
66 TGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACTC--AAA
*
33158739 TTTTTTTTGTTTTTTT
1 TTTTTTTTATTTTTTT
33158755 TTCTTTTTCG
Statistics
Matches: 227, Mismatches: 7, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
109 53 0.23
110 27 0.12
111 146 0.64
112 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (110 bp):
TTTTTTTTATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAAAAATTTTTTTTTCG
TGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACTCAAA
Found at i:33158968 original size:72 final size:72
Alignment explanation
Indices: 33158877--33159020 Score: 270
Period size: 72 Copynumber: 2.0 Consensus size: 72
33158867 ATGATTAGCC
* *
33158877 AATCATTGGTGCAAAAAAAGAGTGGGTACTGTTTATTTTAGGTTATTTTGGTGATTATTTTTAAA
1 AATCATTGGTGCAAAAAAAGAGTGAGTACTGTTCATTTTAGGTTATTTTGGTGATTATTTTTAAA
33158942 CTTAGGT
66 CTTAGGT
33158949 AATCATTGGTGCAAAAAAAGAGTGAGTACTGTTCATTTTAGGTTATTTTGGTGATTATTTTTAAA
1 AATCATTGGTGCAAAAAAAGAGTGAGTACTGTTCATTTTAGGTTATTTTGGTGATTATTTTTAAA
33159014 CTTAGGT
66 CTTAGGT
33159021 TATTTTTATA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.42
Consensus pattern (72 bp):
AATCATTGGTGCAAAAAAAGAGTGAGTACTGTTCATTTTAGGTTATTTTGGTGATTATTTTTAAA
CTTAGGT
Found at i:33163613 original size:22 final size:22
Alignment explanation
Indices: 33163583--33163625 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
33163573 ACACCAAAAC
*
33163583 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
33163605 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
33163626 AGCGCCGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:33163725 original size:44 final size:43
Alignment explanation
Indices: 33163675--33163832 Score: 219
Period size: 43 Copynumber: 3.7 Consensus size: 43
33163665 GCGTCGCTAA
* * *
33163675 CTTTAGCGGCG-TTTTCAAAAATAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTT--ACAACAAACGCCGCTAAAGACCAGGAC
* *
33163719 ATTTAGCGGCGCTTTTACGACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAGACCAGGAC
*
33163762 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAGACCAGGAC
* *
33163805 CTTTAGCGGCGCTTCTACCACAAACGCC
1 CTTTAGCGGCGCTTTTACAACAAACGCC
33163833 ACTATAGGTC
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
43 91 0.87
44 10 0.10
45 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAGACCAGGAC
Found at i:33163749 original size:43 final size:43
Alignment explanation
Indices: 33163697--33163832 Score: 236
Period size: 43 Copynumber: 3.2 Consensus size: 43
33163687 TTTCAAAAAT
* * *
33163697 AAACGCCGCTAAAGACCATGACATTTAGCGGCGCTTTTACGAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTACCAC
33163740 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTACCAC
*
33163783 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTCTACCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTACCAC
33163826 AAACGCC
1 AAACGCC
33163833 ACTATAGGTC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTACCAC
Found at i:33163966 original size:23 final size:24
Alignment explanation
Indices: 33163925--33163971 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
33163915 TTAAAAAAAA
33163925 TTTAATTAAATAATATTTATTTCT
1 TTTAATTAAATAATATTTATTTCT
33163949 TTTAATTAAA-AATATTTATTTCT
1 TTTAATTAAATAATATTTATTTCT
33163972 ATGATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTAATTAAATAATATTTATTTCT
Found at i:33167061 original size:14 final size:14
Alignment explanation
Indices: 33167028--33167089 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
33167018 CTAACTCAAT
33167028 CCCT-AATCTCTAAA
1 CCCTAAATCTCT-AA
33167042 CCCTAAATCTCTAA
1 CCCTAAATCTCTAA
* *
33167056 CTCTAAACCTCTAA
1 CCCTAAATCTCTAA
33167070 TCCC-AAA-CTCATAA
1 -CCCTAAATCTC-TAA
33167084 CCCTAA
1 CCCTAA
33167090 TTACCCCAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 6 0.15
14 26 0.63
15 9 0.22
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (14 bp):
CCCTAAATCTCTAA
Found at i:33167071 original size:21 final size:22
Alignment explanation
Indices: 33167025--33167089 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 22
33167015 ACCCTAACTC
33167025 AATCCCTAATCTCTAAACCCTA
1 AATCCCTAATCTCTAAACCCTA
*
33167047 AATCTCTAA-CTCTAAACCTCT-
1 AATCCCTAATCTCTAAACC-CTA
*
33167068 AATCCC-AAACTC-ATAACCCTA
1 AATCCCTAATCTCTA-AACCCTA
33167089 A
1 A
33167090 TTACCCCAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
20 5 0.14
21 22 0.59
22 10 0.27
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (22 bp):
AATCCCTAATCTCTAAACCCTA
Found at i:33167264 original size:8 final size:7
Alignment explanation
Indices: 33167198--33167244 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
33167188 GACCCTTAAC
33167198 CCCTAAA
1 CCCTAAA
33167205 CCCTAAA
1 CCCTAAA
*
33167212 TCCTAAA
1 CCCTAAA
*
33167219 CCTTAAAA
1 CCCT-AAA
33167227 CCCTAAA
1 CCCTAAA
33167234 CTCCT-AA
1 C-CCTAAA
33167241 CCCT
1 CCCT
33167245 CGGCCCCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
6 3 0.09
7 22 0.65
8 9 0.26
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:33167913 original size:41 final size:42
Alignment explanation
Indices: 33167866--33168100 Score: 223
Period size: 41 Copynumber: 5.7 Consensus size: 42
33167856 ATATGTTTTT
*
33167866 GCGGCGCTTTA-CAAAAAACGCCGCTAAAGGTCTGAGCATTA
1 GCGGCGCTTTATCAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * * * * *
33167907 GTGGCGCTTCATGAAAAAATGCCGCTAAAGGTCAGTGCATTA
1 GCGGCGCTTTATCAAAAAACGCCGCTAAAGGTCTGCGCATTA
** *
33167949 GCGGCGCTTCCT-GAAAAACGCCGCTAAAGGTCTGCGCATTA
1 GCGGCGCTTTATCAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * *
33167990 GCGGCGC-TTATTAAAAAACGCCACTAAAGGTTTGCGCATTA
1 GCGGCGCTTTATCAAAAAACGCCGCTAAAGGTCTGCGCATTA
* ** **
33168031 GCGGCGCTTCT-T-GAAAAGGGCCGCTAAAGGTCCACGCATTA
1 GCGGCGCTT-TATCAAAAAACGCCGCTAAAGGTCTGCGCATTA
* *
33168072 GCGACGCTTCT-T-GAAAAACGCCGCTAAAG
1 GCGGCGCTT-TATCAAAAAACGCCGCTAAAG
33168101 ACCCACAAGG
Statistics
Matches: 163, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
40 2 0.01
41 122 0.75
42 38 0.23
43 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.21
Consensus pattern (42 bp):
GCGGCGCTTTATCAAAAAACGCCGCTAAAGGTCTGCGCATTA
Found at i:33168054 original size:82 final size:82
Alignment explanation
Indices: 33167879--33168100 Score: 291
Period size: 82 Copynumber: 2.7 Consensus size: 82
33167869 GCGCTTTACA
* * * * *
33167879 AAAAACGCCGCTAAAGGTCTGAGCATTAGTGGCGCTTCATGAAAAAATGCCGCTAAAGGTCAGTG
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTT-ATTAAAAAACGCCGCTAAAGGTCAGCG
33167944 CATTAGCGGCGCTTCCTG
65 CATTAGCGGCGCTTCCTG
* **
33167962 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTATTAAAAAACGCCACTAAAGGTTTGCGC
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTATTAAAAAACGCCGCTAAAGGTCAGCGC
*
33168027 ATTAGCGGCGCTTCTTG
66 ATTAGCGGCGCTTCCTG
** ** * * *
33168044 AAAAGGGCCGCTAAAGGTCCACGCATTAGCGACGCTTCTTGAAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTATTAAAAAACGCCGCTAAAG
33168101 ACCCACAAGG
Statistics
Matches: 122, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
82 87 0.71
83 35 0.29
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTATTAAAAAACGCCGCTAAAGGTCAGCGC
ATTAGCGGCGCTTCCTG
Found at i:33168097 original size:123 final size:124
Alignment explanation
Indices: 33167878--33168100 Score: 333
Period size: 123 Copynumber: 1.8 Consensus size: 124
33167868 GGCGCTTTAC
* * * *
33167878 AAAAAACGCCGCTAAAGGTCTGAGCATTAGTGGCGCTTCATGAAAAAATGCCGCTAAAGGTCAGT
1 AAAAAACGCCACTAAAGGTCTGAGCATTAGCGGCGCTTCATGAAAAAAGGCCGCTAAAGGTCAGC
*
33167943 GCATTAGCGGCGCTTCCTGAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTATT
66 GCATTAGCGACGCTTCCTGAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTATT
* * * *
33168002 AAAAAACGCCACTAAAGGTTTGCGCATTAGCGGCGCTTCTTG-AAAAGGGCCGCTAAAGGTCCA-
1 AAAAAACGCCACTAAAGGTCTGAGCATTAGCGGCGCTTCATGAAAAAAGGCCGCTAAAGGT-CAG
*
33168065 CGCATTAGCGACGCTTCTTGAAAAACGCCGCTAAAG
65 CGCATTAGCGACGCTTCCTGAAAAACGCCGCTAAAG
33168101 ACCCACAAGG
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
123 49 0.56
124 39 0.44
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (124 bp):
AAAAAACGCCACTAAAGGTCTGAGCATTAGCGGCGCTTCATGAAAAAAGGCCGCTAAAGGTCAGC
GCATTAGCGACGCTTCCTGAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTATT
Found at i:33171366 original size:30 final size:30
Alignment explanation
Indices: 33171332--33171389 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
33171322 CCTTGACTCT
*
33171332 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
33171362 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
33171390 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:33174956 original size:21 final size:24
Alignment explanation
Indices: 33174912--33174959 Score: 66
Period size: 21 Copynumber: 2.1 Consensus size: 24
33174902 AAAATTACTT
*
33174912 ATTCGAATTGACTCAAATAATTCA
1 ATTCGAATTAACTCAAATAATTCA
33174936 ATTCG-ATTAACT-AAA-AATTCA
1 ATTCGAATTAACTCAAATAATTCA
33174957 ATT
1 ATT
33174960 TAATTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 3 0.13
23 6 0.26
24 5 0.22
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (24 bp):
ATTCGAATTAACTCAAATAATTCA
Found at i:33180002 original size:50 final size:50
Alignment explanation
Indices: 33179927--33180027 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
33179917 TCAATTTTCC
33179927 TCTCAATATCTGTAAATGTTGACTTAGGGTGAGTTTGGATGGGCGGTGCG
1 TCTCAATATCTGTAAATGTTGACTTAGGGTGAGTTTGGATGGGCGGTGCG
33179977 TCTCAATATCTGTAAATGTTGACTTAGGGTGAGTTTGGATGGGCGGTGCG
1 TCTCAATATCTGTAAATGTTGACTTAGGGTGAGTTTGGATGGGCGGTGCG
33180027 T
1 T
33180028 TTACCTGCGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.20, C:0.12, G:0.34, T:0.35
Consensus pattern (50 bp):
TCTCAATATCTGTAAATGTTGACTTAGGGTGAGTTTGGATGGGCGGTGCG
Found at i:33181242 original size:96 final size:96
Alignment explanation
Indices: 33181078--33181273 Score: 374
Period size: 96 Copynumber: 2.0 Consensus size: 96
33181068 ATCCCAAAAA
*
33181078 TTTTAAGGACGAGTATTATCCTCAAACTTATCAAAACAGGATTAAAGTTCAATGTATGTGGGATA
1 TTTTAAGGACGAGTATTATCCTCAAACTCATCAAAACAGGATTAAAGTTCAATGTATGTGGGATA
*
33181143 GCAAATGAGGATTGTGCAAGTTGTCTAGGTG
66 GCAAATGAGGATAGTGCAAGTTGTCTAGGTG
33181174 TTTTAAGGACGAGTATTATCCTCAAACTCATCAAAACAGGATTAAAGTTCAATGTATGTGGGATA
1 TTTTAAGGACGAGTATTATCCTCAAACTCATCAAAACAGGATTAAAGTTCAATGTATGTGGGATA
33181239 GCAAATGAGGATAGTGCAAGTTGTCTAGGTG
66 GCAAATGAGGATAGTGCAAGTTGTCTAGGTG
33181270 TTTT
1 TTTT
33181274 GAGAGATATA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 98 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (96 bp):
TTTTAAGGACGAGTATTATCCTCAAACTCATCAAAACAGGATTAAAGTTCAATGTATGTGGGATA
GCAAATGAGGATAGTGCAAGTTGTCTAGGTG
Found at i:33184251 original size:18 final size:18
Alignment explanation
Indices: 33184230--33184281 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 18
33184220 ATGATATGTT
33184230 TACTTAAGTGAATATTAG
1 TACTTAAGTGAATATTAG
*
33184248 TAC-T-ACTG--TATT--
1 TACTTAAGTGAATATTAG
33184260 TACTTAAGTGAATATTAG
1 TACTTAAGTGAATATTAG
33184278 TACT
1 TACT
33184282 ACTGTATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
12 3 0.12
13 1 0.04
14 7 0.27
16 7 0.27
17 1 0.04
18 7 0.27
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (18 bp):
TACTTAAGTGAATATTAG
Found at i:33184262 original size:30 final size:30
Alignment explanation
Indices: 33184228--33184290 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
33184218 CAATGATATG
33184228 TTTACTTAAGTGAATATTAGTACTACTGTA
1 TTTACTTAAGTGAATATTAGTACTACTGTA
33184258 TTTACTTAAGTGAATATTAGTACTACTGTA
1 TTTACTTAAGTGAATATTAGTACTACTGTA
33184288 TTT
1 TTT
33184291 GGCTATCAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.46
Consensus pattern (30 bp):
TTTACTTAAGTGAATATTAGTACTACTGTA
Found at i:33184419 original size:24 final size:24
Alignment explanation
Indices: 33184386--33184434 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
33184376 TCGAATTAAG
33184386 TAAAAAATTTCAAATTAATCGAGT
1 TAAAAAATTTCAAATTAATCGAGT
* * * *
33184410 TAAAAGATTTTAAGTTAATTGAGT
1 TAAAAAATTTCAAATTAATCGAGT
33184434 T
1 T
33184435 GACGAGTCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39
Consensus pattern (24 bp):
TAAAAAATTTCAAATTAATCGAGT
Found at i:33188148 original size:13 final size:13
Alignment explanation
Indices: 33188104--33188162 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
33188094 GTTGTTGGTG
33188104 ATATTTTTAATTA
1 ATATTTTTAATTA
* *
33188117 AT-TAATTTAGATAA
1 ATAT-TTTTA-ATTA
33188131 ATATTTTTAATTA
1 ATATTTTTAATTA
33188144 ATA-TTTT-ATTA
1 ATATTTTTAATTA
*
33188155 AGATTTTT
1 ATATTTTT
33188163 CGTATTATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
11 6 0.16
12 9 0.24
13 12 0.32
14 9 0.24
15 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (13 bp):
ATATTTTTAATTA
Found at i:33193869 original size:33 final size:27
Alignment explanation
Indices: 33193798--33193879 Score: 101
Period size: 27 Copynumber: 2.8 Consensus size: 27
33193788 AACATAAAAG
*
33193798 GGGGTTGCTAAGTGCTGATTCCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAAA
33193825 GGGGTTGCTAAGTGCTGATTCCCCAAATTA
1 GGGGTTGCTAAGTGCTGATTCCCC-AA--A
33193855 TCGGTGGTTGCTAAGTGCTGATTCC
1 --GG-GGTTGCTAAGTGCTGATTCC
33193880 ACCATATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
27 24 0.50
28 1 0.02
30 1 0.02
32 2 0.04
33 20 0.42
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.30
Consensus pattern (27 bp):
GGGGTTGCTAAGTGCTGATTCCCCAAA
Found at i:33193949 original size:33 final size:33
Alignment explanation
Indices: 33193907--33194033 Score: 112
Period size: 33 Copynumber: 3.6 Consensus size: 33
33193897 GCAAAAGGGG
*
33193907 GGTTGCTAAGTGCTGATTCCCCAAATCATCGGT
1 GGTTGCTAAGTGCTGATTCCCCAAATCATAGGT
* *
33193940 GGTTGCTAAGTGCTGATTCCACTGTAACGGATTGTATAAGG-
1 GGTTGCTAAGTGCTGATTCC-C--CAA---A-T-CAT-AGGT
* * *
33193981 CGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCAAATCATAGGT
33194014 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
33194034 ACCATATTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
32 2 0.03
33 41 0.55
34 2 0.03
35 1 0.01
36 2 0.03
38 1 0.01
39 1 0.01
40 2 0.03
41 21 0.28
42 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCAAATCATAGGT
Found at i:33193958 original size:80 final size:80
Alignment explanation
Indices: 33193825--33194082 Score: 357
Period size: 80 Copynumber: 3.3 Consensus size: 80
33193815 ATTCCCCCAA
*
33193825 GGGGTTGCTAAGTGCTGATTCCCCAAATTATCGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCAAATCATCGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
*
33193890 TGAATGTGCAAAAGG
66 TGAATGTGTAAAAGG
* **
33193905 GGGGTTGCTAAGTGCTGATTCCCCAAATCATCGGTGGTTGCTAAGTGCTGATTCCA-C-T-GTAA
1 GGGGTTGCTAAGTGCTGATTCCCCAAATCATCGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
* * *
33193967 CGGAT-TGTATAA--
66 TGAATGTGTAAAAGG
* * *
33193979 GGCGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCAAATCATCGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
*
33194044 TTAATGTGTAAAAGG
66 TGAATGTGTAAAAGG
*
33194059 GGGGTTGCTAAGTACTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
33194083 CAAGGGGTTG
Statistics
Matches: 152, Mismatches: 20, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
74 53 0.35
75 1 0.01
76 6 0.04
77 7 0.05
78 7 0.05
79 1 0.01
80 77 0.51
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (80 bp):
GGGGTTGCTAAGTGCTGATTCCCCAAATCATCGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
TGAATGTGTAAAAGG
Found at i:33194092 original size:74 final size:77
Alignment explanation
Indices: 33193825--33194111 Score: 304
Period size: 74 Copynumber: 3.7 Consensus size: 77
33193815 ATTCCCCCAA
*
33193825 GGGGTTGCTAAGTGCTGATTCCCCAAATTATCGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCACA-TA--GGTGGTTGCTAAGTGCTGATTCCACCATATTTT
*
33193890 TGAATGTGCAAAAGG
63 TGAATGTGTAAAAGG
* * **
33193905 GGGGTTGCTAAGTGCTGATTCCCCAAATCATCGGTGGTTGCTAAGTGCTGATTCCA-C-T-GTAA
1 GGGGTTGCTAAGTGCTGATTCCCC--A-CATAGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
* * *
33193967 CGGAT-TGTATAA--
63 TGAATGTGTAAAAGG
* *
33193979 GGCGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
1 GGGGTTGCTAAGTGCTGATTCCCC--A-CATAGGTGGTTGCTAAGTGCTGATTCCACCATATTTT
*
33194044 TTAATGTGTAAAAGG
63 TGAATGTGTAAAAGG
* *
33194059 GGGGTTGCTAAGTACTGATTCCCC-CA-AGG-GGTTGCTAAGTGCTGAATCCACCA
1 GGGGTTGCTAAGTGCTGATTCCCCACATAGGTGGTTGCTAAGTGCTGATTCCACCA
33194112 AATAACGGTT
Statistics
Matches: 175, Mismatches: 23, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
74 76 0.43
75 3 0.02
76 8 0.05
77 7 0.04
78 7 0.04
79 1 0.01
80 70 0.40
82 2 0.01
83 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (77 bp):
GGGGTTGCTAAGTGCTGATTCCCCACATAGGTGGTTGCTAAGTGCTGATTCCACCATATTTTTGA
ATGTGTAAAAGG
Found at i:33194095 original size:27 final size:27
Alignment explanation
Indices: 33194059--33194112 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
33194049 GTGTAAAAGG
* *
33194059 GGGGTTGCTAAGTACTGATTCCCCCAA
1 GGGGTTGCTAAGTACTGAATCCACCAA
*
33194086 GGGGTTGCTAAGTGCTGAATCCACCAA
1 GGGGTTGCTAAGTACTGAATCCACCAA
33194113 ATAACGGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (27 bp):
GGGGTTGCTAAGTACTGAATCCACCAA
Found at i:33210931 original size:22 final size:22
Alignment explanation
Indices: 33210903--33210947 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
33210893 TTTAAAAGAT
*
33210903 AATTA-TTTTAAAAACTATCATA
1 AATTATTTTTAAAAAATAT-ATA
33210925 AATTATTTTTAAAAAATATATA
1 AATTATTTTTAAAAAATATATA
33210947 A
1 A
33210948 TAATTATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTATTTTTAAAAAATATATA
Found at i:33216635 original size:2 final size:2
Alignment explanation
Indices: 33216628--33216668 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
33216618 ATGATTAATT
* *
33216628 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
33216669 CATTATGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:33229091 original size:46 final size:45
Alignment explanation
Indices: 33229024--33229184 Score: 247
Period size: 46 Copynumber: 3.6 Consensus size: 45
33229014 TTTGAGTACT
*
33229024 TCTGATCAGTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTA
*
33229069 CCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATC-AGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTA
33229115 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TCTAGCTACACTTA
1 TCTGATC-AGTGACAAAGTGATAAGTGGTAGCAT-TAGCTACACTTA
*
33229160 TCTGATCAGGGAC-AAGTGATAAGTG
1 TCTGATCAGTGACAAAGTGATAAGTG
33229185 ATCATAAGTA
Statistics
Matches: 110, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
43 12 0.11
44 6 0.05
45 25 0.23
46 67 0.61
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.28
Consensus pattern (45 bp):
TCTGATCAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTA
Found at i:33229908 original size:195 final size:196
Alignment explanation
Indices: 33229563--33229955 Score: 770
Period size: 195 Copynumber: 2.0 Consensus size: 196
33229553 TGAATTGCAT
33229563 GAGTATGTATCGGGTCTCGTAGACTTTATTTATTAAGATTATAATATTTTGAGGATATATTGTGA
1 GAGTATGTATC-GGTCTCGTAGACTTTATTTATTAAGATTATAATATTTTGAGGATATATTGTGA
33229628 AGAGTTATAAAAACATGTTATAATTTTGAAAGTTTTAATTTAGATGAAATTTTATAACTCGGTTA
65 AGAGTTATAAAAACATGTTATAATTTTGAAAGTTTTAATTTAGATGAAATTTTATAACTCGGTTA
33229693 AATACGTTTACAAGTGTATGTGTTCTAGTAATGCCTCGTACTCTATTCCAGTGTCGGATACGGGT
130 AATACGTTTACAAGTGTATGTGTTCTAGTAATGCCTCGTACTCTATTCCAGTGTCGGATACGGGT
33229758 AA
195 AA
33229760 GAGTATGTATC-GTCTCGTAGACTTTATTTATTAAGATTATAATATTTTGAGGATATATTGTGAA
1 GAGTATGTATCGGTCTCGTAGACTTTATTTATTAAGATTATAATATTTTGAGGATATATTGTGAA
33229824 GAGTTATAAAAACATGTTATAATTTTGAAAGTTTTAATTTAGATGAAATTTTATAACTCGGTTAA
66 GAGTTATAAAAACATGTTATAATTTTGAAAGTTTTAATTTAGATGAAATTTTATAACTCGGTTAA
33229889 ATACGTTTACAAGTGTATGTGTTCTAGTAATGCCTCGTACTCTATTCCAGTGTCGGATACGGGTA
131 ATACGTTTACAAGTGTATGTGTTCTAGTAATGCCTCGTACTCTATTCCAGTGTCGGATACGGGTA
33229954 A
196 A
33229955 G
1 G
33229956 GAGTGTTACA
Statistics
Matches: 196, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
195 185 0.94
197 11 0.06
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (196 bp):
GAGTATGTATCGGTCTCGTAGACTTTATTTATTAAGATTATAATATTTTGAGGATATATTGTGAA
GAGTTATAAAAACATGTTATAATTTTGAAAGTTTTAATTTAGATGAAATTTTATAACTCGGTTAA
ATACGTTTACAAGTGTATGTGTTCTAGTAATGCCTCGTACTCTATTCCAGTGTCGGATACGGGTA
A
Done.