Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1011

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3371
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34


Found at i:25 original size:15 final size:17

Alignment explanation


    Indices: 5--36  Score: 50
    Period size: 15  Copynumber: 2.0  Consensus size: 17

          1 ATTA

                             
          5 TATTTT-TAA-ATTTTT
          1 TATTTTCTAATATTTTT

                             
         20 TATTTTCTAATATTTTT
          1 TATTTTCTAATATTTTT

         37 AATGGTGTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    6  0.40
  16    3  0.20
  17    6  0.40

ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72


Consensus pattern (17 bp):   
TATTTTCTAATATTTTT
Done.