Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1055

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3088
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:186 original size:30 final size:28

Alignment explanation


    Indices: 150--221  Score: 81
    Period size: 29  Copynumber: 2.5  Consensus size: 28

        140 ACAATTGGAC

                          *               
        150 CTAAATTTTGAAAACTAAAAAGTATAGGCA
          1 CTAAATTTT-AAAAAT-AAAAGTATAGGCA

                             *         * 
        180 CTAAATTCTTAAAAATATAAGTATAGGGA
          1 CTAAATT-TTAAAAATAAAAGTATAGGCA

            *            
        209 TTAAATTTTAAAA
          1 CTAAATTTTAAAA

        222 TTTTGAAGAG


Statistics
Matches: 37,  Mismatches: 4, Indels: 4
        0.82            0.09        0.09

Matches are distributed among these distances:
  28    6  0.16
  29   17  0.46
  30   12  0.32
  31    2  0.05

ACGTcount: A:0.50, C:0.07, G:0.11, T:0.32


Consensus pattern (28 bp):   
CTAAATTTTAAAAATAAAAGTATAGGCA
Done.