Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold923

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4204
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31


Found at i:1538 original size:21 final size:21

Alignment explanation


    Indices: 1512--1552  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1502 ATCTGCTCAA

                      * *        
       1512 ACTCCACCTGTTTTGGAGTAC
          1 ACTCCACCTGCTGTGGAGTAC

                                
       1533 ACTCCACCTGCTGTGGAGTA
          1 ACTCCACCTGCTGTGGAGTA

       1553 TTGCTCGTCT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29


Consensus pattern (21 bp):   
ACTCCACCTGCTGTGGAGTAC
Done.