Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2186

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37


Found at i:139 original size:24 final size:24

Alignment explanation


    Indices: 81--132  Score: 104
    Period size: 24  Copynumber: 2.2  Consensus size: 24

         71 TTGAATGTAG

                                    
         81 ATAGTGATATTAGCATGATGTACA
          1 ATAGTGATATTAGCATGATGTACA

                                    
        105 ATAGTGATATTAGCATGATGTACA
          1 ATAGTGATATTAGCATGATGTACA

                
        129 ATAG
          1 ATAG

        133 GAATATTCAT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33


Consensus pattern (24 bp):   
ATAGTGATATTAGCATGATGTACA
Done.