Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold651

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13401
ACGTcount: A:0.14, C:0.07, G:0.08, T:0.11

Warning! 8026 characters in sequence are not A, C, G, or T


Found at i:733 original size:10 final size:10

Alignment explanation


    Indices: 718--779  Score: 52
    Period size: 10  Copynumber: 5.9  Consensus size: 10

        708 TTTGAACCAT

                     *
        718 TACCAATTCG
          1 TACCAATTCA

                     *  
        728 TACCAAATACCA
          1 TACC-AAT-TCA

                 *    
        740 TACCATTTCA
          1 TACCAATTCA

                       
        750 TACCAATTCCA
          1 TACCAATT-CA

                 *   *
        761 TACCATTTCG
          1 TACCAATTCA

                     
        771 TACCAATTC
          1 TACCAATTC

        780 CCAAATACCA


Statistics
Matches: 41,  Mismatches: 8, Indels: 6
        0.75            0.15        0.11

Matches are distributed among these distances:
  10   22  0.54
  11   14  0.34
  12    5  0.12

ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31


Consensus pattern (10 bp):   
TACCAATTCA

Found at i:763 original size:21 final size:21

Alignment explanation


    Indices: 718--780  Score: 90
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        708 TTTGAACCAT

                 *            *   
        718 TACCAATTCGTACCAAATACCA
          1 TACCATTTCGTACC-AATTCCA

                     *           
        740 TACCATTTCATACCAATTCCA
          1 TACCATTTCGTACCAATTCCA

                                
        761 TACCATTTCGTACCAATTCC
          1 TACCATTTCGTACCAATTCC

        781 CAAATACCAA


Statistics
Matches: 37,  Mismatches: 4, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  21   25  0.68
  22   12  0.32

ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30


Consensus pattern (21 bp):   
TACCATTTCGTACCAATTCCA
Done.