Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3315

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 460

Length: 768
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:492 original size:24 final size:25

Alignment explanation


    Indices: 443--493  Score: 77
    Period size: 24  Copynumber: 2.1  Consensus size: 25

        433 AAAAAAATTG

                                     
        443 GGAGTCGCCACCAATCATTTATTAA
          1 GGAGTCGCCACCAATCATTTATTAA

                    *       *        
        468 GGAGTCGCGACC-ATCTTTTATTAA
          1 GGAGTCGCCACCAATCATTTATTAA

              
        492 GG
          1 GG

        494 TGTGATTGGA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  24   13  0.54
  25   11  0.46

ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Consensus pattern (25 bp):   
GGAGTCGCCACCAATCATTTATTAA
Done.