Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2575

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 905
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35


Found at i:888 original size:8 final size:9

Alignment explanation


    Indices: 870--896  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

        860 AATCTGATTC

                     
        870 AAAAATAAA
          1 AAAAATAAA

                     
        879 AAAAATAAA
          1 AAAAATAAA

                     
        888 AAAAATAAA
          1 AAAAATAAA

        897 GGAGGAATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11


Consensus pattern (9 bp):   
AAAAATAAA
Done.