Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold271
Parameters: 2 7 7 80 10 50 1000
Length:  858520

Tables:   1   2   3   4   

This is table  4  of  4  ( 409 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
831601--831633
3
11.0
3
93
0
57
33
3
0
63
1.10
833024--833065
21
2.1
21
86
8
61
30
11
9
47
1.72
833061--833098
17
2.3
16
86
4
58
50
10
0
39
1.37
833024--833138
19
5.9
20
72
16
66
43
10
5
40
1.61
833011--833116
54
2.0
54
83
7
135
45
11
4
38
1.61
833160--833284
36
3.4
35
77
16
114
44
10
10
35
1.73
833201--833395
18
10.9
18
71
15
120
47
10
12
30
1.74
833170--833393
17
12.4
18
70
17
135
46
11
12
29
1.76
833235--833385
56
2.7
54
74
11
146
46
9
12
31
1.75
833300--833408
35
3.0
35
82
8
112
44
11
13
31
1.79
833440--833486
17
2.7
17
78
15
60
44
10
12
31
1.77
833440--833483
18
2.5
18
82
14
56
45
6
13
34
1.70
833786--833812
5
5.4
5
100
0
54
81
0
0
18
0.69
833786--833836
17
3.1
17
83
10
54
76
5
0
17
0.98
834510--834559
24
2.1
23
92
3
82
0
10
16
74
1.08
834882--834982
29
3.4
29
73
9
89
41
4
19
33
1.73
835307--835591
80
3.6
80
83
6
212
35
17
15
31
1.91
835375--836343
83
11.7
83
87
6
1320
36
16
15
31
1.90
835375--836343
169
5.9
169
93
3
1533
36
16
15
31
1.90
837118--837185
18
3.8
17
79
12
66
5
4
4
85
0.83
837135--837189
8
7.0
8
76
17
53
9
1
3
85
0.79
837111--837178
22
3.0
22
81
14
68
7
4
2
85
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
837112--837179
1
68.0
1
73
0
55
5
4
2
86
0.77
837118--837179
14
4.5
13
86
7
79
6
3
3
87
0.75
843695--843748
17
3.2
17
76
2
56
46
9
0
44
1.35
843712--843753
19
2.2
20
86
4
59
40
7
0
52
1.29
843796--844027
17
12.8
17
70
15
117
44
11
13
30
1.79
843777--843897
37
3.3
36
74
12
111
42
11
14
31
1.81
843789--843926
38
3.8
35
74
14
118
43
10
13
32
1.78
843941--844044
17
5.6
20
79
10
80
42
10
12
34
1.77
843934--844036
18
5.7
17
74
16
82
42
10
14
32
1.80
843934--844036
35
2.8
35
80
5
107
42
10
14
32
1.80
844076--844122
17
2.7
17
78
15
60
44
10
12
31
1.77
844076--844119
18
2.5
18
82
14
56
45
6
13
34
1.70
844428--844454
5
5.4
5
100
0
54
81
0
0
18
0.69
845137--845186
24
2.1
23
92
3
82
0
10
16
74
1.08
845227--845259
17
1.9
17
93
0
57
15
21
48
15
1.81
845527--845626
29
3.4
29
77
8
105
41
4
20
35
1.71
847406--847452
12
3.8
12
75
13
51
48
2
0
48
1.13
849428--849476
13
3.6
13
79
17
55
69
6
2
22
1.21
849815--849869
24
2.3
24
78
6
58
56
5
1
36
1.33
849819--849904
34
2.7
33
82
8
88
56
4
3
34
1.37
849838--849903
34
1.9
35
87
3
98
57
3
3
36
1.29
849810--849928
30
3.8
31
74
13
86
59
5
2
32
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
849883--849936
16
3.4
16
78
17
51
59
5
0
35
1.21
849981--850013
3
11.0
3
87
12
50
63
0
0
36
0.95
849985--850032
18
2.7
18
87
6
62
58
2
6
33
1.35
849978--850027
21
2.4
21
78
18
59
60
4
2
34
1.27
856297--856340
22
1.9
24
90
9
74
25
20
0
54
1.45

Tables:   1   2   3   4

The End!