Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2912

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 495

Length: 826
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39


Found at i:176 original size:20 final size:19

Alignment explanation


    Indices: 121--165  Score: 54
    Period size: 20  Copynumber: 2.3  Consensus size: 19

        111 CATTTCATTG

                     *           
        121 AGCTCCAATTAGCTCATTTCC
          1 AGCTCC-ATGAGCTCATTT-C

                      *        
        142 AGCTCCATGAACTCATTTC
          1 AGCTCCATGAGCTCATTTC

                 
        161 AGCTC
          1 AGCTC

        166 ATTTGAGCTC


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  19    6  0.27
  20   10  0.45
  21    6  0.27

ACGTcount: A:0.24, C:0.33, G:0.11, T:0.31


Consensus pattern (19 bp):   
AGCTCCATGAGCTCATTTC
Done.