Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2573

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 906
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39


Found at i:803 original size:16 final size:16

Alignment explanation


    Indices: 781--828  Score: 60
    Period size: 18  Copynumber: 2.9  Consensus size: 16

        771 AATTAATATT

                            
        781 ATACATAACTTACAAC
          1 ATACATAACTTACAAC

            *              *  
        797 TTACATAACTATTACGAC
          1 ATACATAAC--TTACAAC

                          
        815 ATACATAACTTACA
          1 ATACATAACTTACA

        829 TAGCATAATT


Statistics
Matches: 26,  Mismatches: 4, Indels: 4
        0.76            0.12        0.12

Matches are distributed among these distances:
  16   12  0.46
  18   14  0.54

ACGTcount: A:0.46, C:0.23, G:0.02, T:0.29


Consensus pattern (16 bp):   
ATACATAACTTACAAC

Found at i:887 original size:16 final size:16

Alignment explanation


    Indices: 866--899  Score: 59
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        856 ACATAATTCA

                            
        866 ACATAATAAATAACTT
          1 ACATAATAAATAACTT

                    *       
        882 ACATAATACATAACTT
          1 ACATAATAAATAACTT

              
        898 AC
          1 AC

        900 GTAGCTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29


Consensus pattern (16 bp):   
ACATAATAAATAACTT
Done.