Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2935

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 493

Length: 823
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34


Found at i:416 original size:26 final size:26

Alignment explanation


    Indices: 379--430  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        369 AAAATTAGTG

                   *                  
        379 CTAATTAGACTGAAATATAGAATGTT
          1 CTAATTAAACTGAAATATAGAATGTT

                                      
        405 CTAATTAAACTGAAATATAGAATGTT
          1 CTAATTAAACTGAAATATAGAATGTT

        431 TTCTTTTATT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35


Consensus pattern (26 bp):   
CTAATTAAACTGAAATATAGAATGTT
Done.