Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2501

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 555

Length: 926
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31


Found at i:449 original size:132 final size:132

Alignment explanation


    Indices: 211--926  Score: 1045
    Period size: 132  Copynumber: 5.4  Consensus size: 132

        201 TACTCACGGA

                             *     *  *                 * *                  
        211 GATAGGACTAATGGCTTTAATCTACTACTCCACTGTATTGGGAAAAGAAGATTCACCATCTTCGA
          1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA

               *                                *      *           *         
        276 TCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAGTCTTCAGCCTACTCCACTGCTGCTTAGG
         66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG

              
        341 GT
        131 GT

                        *   *                 *                              
        343 GATAGGACTAATTGCTGAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGA
          1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA

                                              *                            * 
        408 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTATG
         66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG

              
        473 GT
        131 GT

               * *                   *             *               *         
        475 GATTGAACTAATGGCTTAAATCTGCATCTCCACTGTATTTGGAAGATAAGATTCATCATCTTCGA
          1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA

                        *  *                  *           *                  
        540 TCTGCTCCACTAGTGGTTAGGGTGACAGAATCTGGAATCTTCAACCGACTCCACTACTGCTTAGG
         66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG

              
        605 GT
        131 GT

                          *               *                        *         
        607 GATAGGACTAATGGTTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCAGCATCTTCGA
          1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA

                      *        **    *       *                   *           
        672 TCTGCTCCACAACTGCTTACAGTGATAGAATCTACAATCTTCAACCTACTCCAGTACTGCTTAGG
         66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG

              
        737 GT
        131 GT

                                   *            *         *      *     *     
        739 GATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTTTTGGGAAGACAAGATTTACCATATTCGA
          1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA

                        *                                           *        
        804 TCTGCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAATGCTTAGG
         66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG

              
        869 GT
        131 GT

               *       *  *                        *                
        871 GATTGGACTAACGGATTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCAC
          1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCAC


Statistics
Matches: 516,  Mismatches: 68, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
 132  516  1.00

ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31


Consensus pattern (132 bp):   
GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
GT

Done.