Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4378

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 325

Length: 543
ACGTcount: A:0.25, C:0.17, G:0.13, T:0.44


Found at i:71 original size:20 final size:20

Alignment explanation


    Indices: 42--85  Score: 81
    Period size: 20  Copynumber: 2.2  Consensus size: 20

         32 AAAAAAATAG

                                
         42 AAAA-AAGCAAAAAGCGCAA
          1 AAAATAAGCAAAAAGCGCAA

                                
         61 AAAATAAGCAAAAAGCGCAA
          1 AAAATAAGCAAAAAGCGCAA

                 
         81 AAAAT
          1 AAAAT

         86 TTTTTTTGCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  19    4  0.17
  20   20  0.83

ACGTcount: A:0.68, C:0.14, G:0.14, T:0.05


Consensus pattern (20 bp):   
AAAATAAGCAAAAAGCGCAA
Done.