Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 113 of 187
Found at i:33841369 original size:20 final size:20
Alignment explanation
Indices: 33841344--33841391 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
33841334 GAGTTATTTG
*
33841344 AGTAAGCAAGTAAGTAAACA
1 AGTAAGCAAGTAAATAAACA
*
33841364 AGTAAG-AGAGTAAATAAAGA
1 AGTAAGCA-AGTAAATAAACA
33841384 AG-AAGCAA
1 AGTAAGCAA
33841392 AGACCATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.58, C:0.06, G:0.23, T:0.12
Consensus pattern (20 bp):
AGTAAGCAAGTAAATAAACA
Found at i:33845104 original size:18 final size:18
Alignment explanation
Indices: 33845081--33845145 Score: 121
Period size: 18 Copynumber: 3.6 Consensus size: 18
33845071 TAAGTACACT
33845081 TTAATTATTTTGTAAAAA
1 TTAATTATTTTGTAAAAA
*
33845099 TTAATTATTTTATAAAAA
1 TTAATTATTTTGTAAAAA
33845117 TTAATTATTTTGTAAAAA
1 TTAATTATTTTGTAAAAA
33845135 TTAATTATTTT
1 TTAATTATTTT
33845146 TTCGACAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTAATTATTTTGTAAAAA
Found at i:33848420 original size:16 final size:15
Alignment explanation
Indices: 33848395--33848428 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
33848385 AAAGCTGATA
*
33848395 ATAATTAATATATATT
1 ATAATAAATATA-ATT
33848411 ATAATAAATATAATT
1 ATAATAAATATAATT
33848426 ATA
1 ATA
33848429 TATTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:33848428 original size:22 final size:20
Alignment explanation
Indices: 33848392--33848438 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
33848382 AATAAAGCTG
33848392 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
33848411 ATAATAAATATAATTATATATTA
1 ATAAT-AAT-TAA-TATATATTA
33848434 ATAAT
1 ATAAT
33848439 TATCATCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.21
20 3 0.12
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:33848527 original size:32 final size:32
Alignment explanation
Indices: 33848489--33848559 Score: 94
Period size: 30 Copynumber: 2.3 Consensus size: 32
33848479 TCTAGATGCT
* *
33848489 TTTTTAAAATATTTACAAAAAGAGGC-ATCTAA
1 TTTTTAAAATATTTACAAAAAGA-GCAACCAAA
33848521 TTTTT--AATATTTACAAAAAGAGCAACCAAA
1 TTTTTAAAATATTTACAAAAAGAGCAACCAAA
33848551 TTTTTAAAA
1 TTTTTAAAA
33848560 ATAATTCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 2 0.06
30 25 0.74
32 7 0.21
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.35
Consensus pattern (32 bp):
TTTTTAAAATATTTACAAAAAGAGCAACCAAA
Found at i:33853829 original size:24 final size:24
Alignment explanation
Indices: 33853797--33853845 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
33853787 CAACAAAGCT
33853797 ATCCCTAAATTTCCCTAAAATTAG
1 ATCCCTAAATTTCCCTAAAATTAG
*
33853821 ATCCTTAAATTTCCCTAAAATTAG
1 ATCCCTAAATTTCCCTAAAATTAG
33853845 A
1 A
33853846 CTCATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (24 bp):
ATCCCTAAATTTCCCTAAAATTAG
Found at i:33855078 original size:50 final size:50
Alignment explanation
Indices: 33854954--33855148 Score: 196
Period size: 50 Copynumber: 3.9 Consensus size: 50
33854944 AATAATGACA
* * ** * * *
33854954 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAT-CGG
* * * **
33855003 TGCCAATGCCATATCCCATATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCGG
* * ** * *
33855053 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCGG
*
33855103 TGCCAATGCCATGTCCTAGACATGGTCTTACATGAGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATA
33855149 GTCTCAATAA
Statistics
Matches: 117, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
48 1 0.01
49 37 0.32
50 79 0.68
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCGG
Found at i:33862684 original size:50 final size:50
Alignment explanation
Indices: 33862549--33862788 Score: 214
Period size: 50 Copynumber: 4.7 Consensus size: 50
33862539 ACATGTCAAA
* ** * * *
33862549 GCCATGTCCTAGACATGGTCTTACATGGGATGTTTCCTGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGGTGCCAAT
* * * * ** *
33862598 GTCATATCCCATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAAT
** * *
33862648 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTAGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAAT
* **
33862698 GCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAGTCTCAATAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA---TC---GGTGCCAAT
*
33862754 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
33862789 TTACCCAAAT
Statistics
Matches: 152, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 30 0.20
50 80 0.53
53 1 0.01
56 40 0.26
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.30
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAAT
Found at i:33876024 original size:11 final size:10
Alignment explanation
Indices: 33875992--33876040 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
33875982 AGCAATTTAA
33875992 TTTT-TTTTC
1 TTTTATTTTC
*
33876001 TTTTATGTTC
1 TTTTATTTTC
33876011 TTTTAATTTTC
1 TTTT-ATTTTC
33876022 TTTCT-TTTTC
1 TTT-TATTTTC
33876032 -TTTATTTTC
1 TTTTATTTTC
33876041 CATTCTCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 1 0.03
9 11 0.32
10 13 0.38
11 8 0.24
12 1 0.03
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (10 bp):
TTTTATTTTC
Found at i:33879279 original size:20 final size:20
Alignment explanation
Indices: 33879229--33879278 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
33879219 TAAAAATTAA
33879229 AAAATATTTTATATAATTTT
1 AAAATATTTTATATAATTTT
* *
33879249 CAAATAATTTTA-ATATTTTT
1 AAAAT-ATTTTATATAATTTT
33879269 AAAATATTTT
1 AAAATATTTT
33879279 TTGAATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 5 0.19
20 15 0.58
21 6 0.23
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
AAAATATTTTATATAATTTT
Found at i:33883729 original size:6 final size:6
Alignment explanation
Indices: 33883718--33883751 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
33883708 CTTTTAGTGA
33883718 GAATGT GAATGT GAATGT GAATGT GAATGT GAAT
1 GAATGT GAATGT GAATGT GAATGT GAATGT GAAT
33883752 ATGATAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (6 bp):
GAATGT
Found at i:33884237 original size:34 final size:34
Alignment explanation
Indices: 33884198--33884266 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
33884188 TAGATAATTT
33884198 TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
1 TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
*
33884232 TAAAGAGTTTTCTTAGGGTTCAATTACTCTTGTA
1 TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
33884266 T
1 T
33884267 TTTGCCTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (34 bp):
TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
Found at i:33884831 original size:11 final size:12
Alignment explanation
Indices: 33884807--33884836 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
33884797 AAGAAGAAGC
33884807 AAAAAGCGCAAA
1 AAAAAGCGCAAA
*
33884819 AAAAATCGCAAA
1 AAAAAGCGCAAA
33884831 AAAAAG
1 AAAAAG
33884837 TGGCCTACCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.70, C:0.13, G:0.13, T:0.03
Consensus pattern (12 bp):
AAAAAGCGCAAA
Found at i:33884878 original size:3 final size:3
Alignment explanation
Indices: 33884872--33884905 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
33884862 CTTCTTTTCC
33884872 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
33884906 TTTCCAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:33890417 original size:34 final size:34
Alignment explanation
Indices: 33890379--33890447 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
33890369 TAGATAATTT
33890379 TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
1 TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
33890413 TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
1 TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
33890447 T
1 T
33890448 TTTGCCTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.45
Consensus pattern (34 bp):
TAAAGAGTTTTATTAGGGTTCAATTACTCTTGTA
Found at i:33895618 original size:26 final size:26
Alignment explanation
Indices: 33895582--33895742 Score: 225
Period size: 26 Copynumber: 6.2 Consensus size: 26
33895572 AACACGTCAG
* *
33895582 GAAAGAAAGCCTGTATGGTGTAATAT
1 GAAAGAAAGCCTGTGTGGCGTAATAT
33895608 GAAAGAAAGCCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTGTGTGGCGTAATAT
* *
33895634 GAAAGAAAGCTTGTGTGGTGTAATAT
1 GAAAGAAAGCCTGTGTGGCGTAATAT
** *
33895660 GAAAGAAAGCCTGTAAGGCATAATAT
1 GAAAGAAAGCCTGTGTGGCGTAATAT
33895686 GAAAGAAA-CCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTGTGTGGCGTAATAT
* * *
33895711 GGAAGAAAGCCTGTGTGGCTTAACAT
1 GAAAGAAAGCCTGTGTGGCGTAATAT
33895737 GAAAGA
1 GAAAGA
33895743 GAGCTTATAT
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
25 21 0.18
26 97 0.82
ACGTcount: A:0.38, C:0.10, G:0.29, T:0.24
Consensus pattern (26 bp):
GAAAGAAAGCCTGTGTGGCGTAATAT
Found at i:33895726 original size:77 final size:78
Alignment explanation
Indices: 33895582--33895742 Score: 245
Period size: 77 Copynumber: 2.1 Consensus size: 78
33895572 AACACGTCAG
* ** *
33895582 GAAAGAAAGCCTGTATGGTGTAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCTTG
1 GAAAGAAAGCCTGTAAGGCATAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCCTG
*
33895647 TGTGG-TGTAATAT
66 TGTGGCT-TAACAT
*
33895660 GAAAGAAAGCCTGTAAGGCATAATATGAAAGAAA-CCTGTGTGGCGTAATATGGAAGAAAGCCTG
1 GAAAGAAAGCCTGTAAGGCATAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCCTG
33895724 TGTGGCTTAACAT
66 TGTGGCTTAACAT
33895737 GAAAGA
1 GAAAGA
33895743 GAGCTTATAT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
77 44 0.58
78 32 0.42
ACGTcount: A:0.38, C:0.10, G:0.29, T:0.24
Consensus pattern (78 bp):
GAAAGAAAGCCTGTAAGGCATAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCCTG
TGTGGCTTAACAT
Found at i:33895762 original size:77 final size:78
Alignment explanation
Indices: 33895582--33895782 Score: 228
Period size: 77 Copynumber: 2.6 Consensus size: 78
33895572 AACACGTCAG
* * ** *
33895582 GAAAGAAAGCCTGTATGGTGTAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCTTG
1 GAAAGAAAGCCTATAAGGCATAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCCTG
*
33895647 TGTGGTGTAATAT
66 TGTGGTGTAACAT
* *
33895660 GAAAGAAAGCCTGTAAGGCATAATATGAAAGAAA-CCTGTGTGGCGTAATATGGAAGAAAGCCTG
1 GAAAGAAAGCCTATAAGGCATAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCCTG
33895724 TGTGGCT-TAACAT
66 TGTGG-TGTAACAT
* * * * * *
33895737 GAAAGAGAGCTTATATGGCGA-AATATGGAAGGAATGCCTTTGTGGC
1 GAAAGAAAGCCTATAAGGC-ATAATAT-GAAAGAAAGCCTGTGTGGC
33895783 AAGCTCTGTA
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
77 58 0.55
78 39 0.37
79 9 0.08
ACGTcount: A:0.36, C:0.10, G:0.29, T:0.24
Consensus pattern (78 bp):
GAAAGAAAGCCTATAAGGCATAATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCCTG
TGTGGTGTAACAT
Found at i:33898054 original size:20 final size:20
Alignment explanation
Indices: 33898029--33898067 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33898019 ACCCAATTAA
33898029 AAATTA-TTTTAAAGTGTTTT
1 AAATTACTTTTAAA-TGTTTT
33898049 AAATTACTTTTAAATGTTT
1 AAATTACTTTTAAATGTTT
33898068 ATAAGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (20 bp):
AAATTACTTTTAAATGTTTT
Found at i:33901481 original size:14 final size:13
Alignment explanation
Indices: 33901448--33901490 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
33901438 AATCAGAAAT
33901448 AAATAAACAAAAAA
1 AAATAAA-AAAAAA
*
33901462 ATATAAAAAAATAA
1 AAATAAAAAAA-AA
33901476 AAATAAAAACAAAA
1 AAATAAAAA-AAAA
33901490 A
1 A
33901491 TTATTAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 4 0.16
14 19 0.76
15 2 0.08
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.12
Consensus pattern (13 bp):
AAATAAAAAAAAA
Found at i:33908758 original size:22 final size:22
Alignment explanation
Indices: 33908718--33908759 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
33908708 ACTACCATGC
*
33908718 GGGAATTACAGGGCATTCAATA
1 GGGAATTACACGGCATTCAATA
* *
33908740 GGGAATTGCACGGCTTTCAA
1 GGGAATTACACGGCATTCAA
33908760 GAAGATAGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (22 bp):
GGGAATTACACGGCATTCAATA
Found at i:33915825 original size:45 final size:45
Alignment explanation
Indices: 33915714--33915832 Score: 105
Period size: 45 Copynumber: 2.6 Consensus size: 45
33915704 CATCAGGTCT
* * * * * *
33915714 TATCTCCCTAAAGTTGCAGCGGAGTAAACCGAAGAATAGTAGATCT
1 TATCTCCCT-AAGTTGCAGTGGAGTAGATCGAAGAATAGAAAATCC
* ** * *
33915760 TATCTTCCTAAGCAGGAGTGGAGTAGATCGAAG-ATGGAAAATCC
1 TATCTCCCTAAGTTGCAGTGGAGTAGATCGAAGAATAGAAAATCC
*
33915804 TATCTCCCTAAGGTTGCAGTGGAGCAGAT
1 TATCTCCCTAA-GTTGCAGTGGAGTAGAT
33915833 TGATGCCAAT
Statistics
Matches: 56, Mismatches: 16, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
44 17 0.30
45 31 0.55
46 8 0.14
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (45 bp):
TATCTCCCTAAGTTGCAGTGGAGTAGATCGAAGAATAGAAAATCC
Found at i:33916024 original size:44 final size:44
Alignment explanation
Indices: 33915930--33916959 Score: 167
Period size: 44 Copynumber: 23.6 Consensus size: 44
33915920 TCGCATCAGG
* * * * *
33915930 TCTTATCTCCCTGAAGTTGCAGCGGAGTAGACCGAAGAAGCATA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* *
33915974 TCTTATCTCCCT-AAGTAGTAGTGGAGCAGATCGAAGATGGCAAA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGA-AGCAAA
* * * * ** *
33916018 TTTTATCTCCCTGAGGTTGTAGTAGAGCAGATTGAAGCCGCTAA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* * * * * * *
33916062 TCCTATCTCTCTGAAGTTGCAGTGGAGC-GAAT-TAAAACAACATA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAG-ATCGAAGA-AGCAAA
* * * * * * * **
33916106 TCTTATCTCTCTGAAGTTGCAATAGAGTAGATC---GCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* * * * *
33916147 TCTTATCTCCCTGAGGTTATAGTGAAGCAGA-CTG-AGAAAACAAG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATC-GAAG-AAGCAAA
* * * * * * **
33916191 TTTTATCCCCCTGAAGTTGAAGTGGGGCAGA-CTAAAGATGGTGAA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATC-GAAGA-AGCAAA
* * * ** * *
33916236 TCTTATCTTCCTG-AGTTTGCAGTGGAGTAGATTAAAGCCAG-TAA
1 TCTTATCTCCCTGAAG-TTGTAGTGGAGCAGATCGAAG-AAGCAAA
** * * * * *
33916280 TCCCATCTCCCTGAAGTTGTAGTGGAGCGGATTCAAATAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-TCGAAGAAGCAAA
* * * * ** * * **
33916324 TCCTATCTCTCTGAAGTTGCAGTAGAGTGGATC--A-CATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* * * * *
33916365 TCTTATCTCCTTGAGGTTGCAGCGGAGCAGA-CTG-AGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATC-GAAG-AAGCAAA
* ** *
33916409 TCTTATC-CCTCTGAAGTTGAAGCAGAGCAGATCGAAGATGGCAAA
1 TCTTATCTCC-CTGAAGTTGTAGTGGAGCAGATCGAAGA-AGCAAA
* * * ** **
33916454 TCTTATCT-CCTGAGGTTGCAGTGGAGCAGATTGAAGCCGTTAA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* * * * * * * *
33916497 TCCTATCTCTCTGAAGTTGCAGTGGAGCGGAT-TAAAACAACAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGA-AGCAAA
* * * * * * * **
33916541 TCTTATGTCTCTGAAGTTGCAGTAGAGTAGATC---GCATCAGG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* * *
33916582 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGA-CTG-AGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATC-GAAG-AAGCAAA
** * * * **
33916626 TCTTATC-CCCTTGAAGTTAAAGTGGGGCAGA-CTAAAAATGGTGAA
1 TCTTATCTCCC-TGAAGTTGTAGTGGAGCAGATCGAAGAA--GCAAA
* ** * *
33916671 TCTTATCTCCCTG-AGTT-TACAGTGGAGTAGATTAAAGCCAG-TAA
1 TCTTATCTCCCTGAAGTTGT--AGTGGAGCAGATCGAAG-AAGCAAA
** * * ** * * *
33916715 TCCCATCTCCCTGAAGTTGCAGTGGAGCGGATTTAATAA-TAGA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* * * * * * *
33916758 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATC--A-CATCAAG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
* * * * * * *
33916799 TCTTATTTCCCTGAGGTTGCAGCGGAGTAGA-CTAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAG-AAGCAAA
* * * * **
33916843 TCTTATCCCCCTGAAGTTGAAGTGGGGCAGAAT-GAAGATTGTGAA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAG-ATCGAAGA-AGCAAA
* ** * *
33916888 TCTTATCTCCCTG-AGTT-TACAGTGGAGTAGATTAAAGCCAG-TAA
1 TCTTATCTCCCTGAAGTTGT--AGTGGAGCAGATCGAAG-AAGCAAA
* *
33916932 TCTCATCTCCCTGAAGTTGCAGTGGAGC
1 TCTTATCTCCCTGAAGTTGTAGTGGAGC
33916960 GGATTCAAAT
Statistics
Matches: 712, Mismatches: 213, Indels: 122
0.68 0.20 0.12
Matches are distributed among these distances:
40 6 0.01
41 110 0.15
42 2 0.00
43 74 0.10
44 383 0.54
45 131 0.18
46 5 0.01
47 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAGAAGCAAA
Found at i:33916613 original size:435 final size:435
Alignment explanation
Indices: 33915790--33917297 Score: 2175
Period size: 435 Copynumber: 3.5 Consensus size: 435
33915780 GAGTAGATCG
** * * * * * * * * *
33915790 AAGATGGAAAATCCTATCTCCCTAAGGTTGCAGTGGAGCAGATTGATGCCAATAATCCTATCTTC
1 AAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCC
* * * * *
33915855 TTGAAGTTGTAGTGGAGCGGATTTAAATAACAGATATTATCTCTCTGAAGTTGCAGTAGAGTAGA
66 CTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
* * * * *
33915920 TCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGTAGACCGA-AGAAGCATA-TCTTATCTC
131 TCACATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGA-AAGCA-AGTCTTATCCC
* * * * *
33915983 CCT-AAGTAGTAGTGGAGCAGATCGAAGATGGCAAATTTTATCTCCCTGAGGTTGTAGTAGAGCA
194 CCTGAAGTTGAAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCA
* *
33916047 GATTGAAGCCGCTAATCCTATCTCTCTGAAGTTGCAGTGGAGCGAATTAAAACAACATATCTTAT
259 GATTGAAGCCG-TAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTAT
* ** *
33916112 CTCTCTGAAGTTGCAATAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTATAGTGAAGCAG
323 CTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAG
* *
33916177 ACTGAGAAAACAAGTTTTATCCCCCTGAAGTTGAAGTGGGGCAGACTA
388 ACTGAGAAAGCAAGTCTTATCCCCCTGAAGTTGAAGTGGGGCAGACTA
*
33916225 AAGATGGTGAATCTTATCTTCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCC
1 AAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCC
* * *
33916290 CTGAAGTTGTAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTGGA
66 CTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
* *
33916355 TCACATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCTC
131 TCACATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCC
**
33916420 TGAAGTTGAAGCAGAGCAGATCGAAGATGGCAAATCTTATCT-CCTGAGGTTGCAGTGGAGCAGA
196 TGAAGTTGAAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
*
33916484 TTGAAGCCGTTAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTATGT
261 TTGAAGCCG-TAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTATCT
33916549 CTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGAC
325 CTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGAC
* *
33916614 TGAGAAAGCAAGTCTTATCCCCTTGAAGTTAAAGTGGGGCAGACTA
390 TGAGAAAGCAAGTCTTATCCCCCTGAAGTTGAAGTGGGGCAGACTA
* *
33916660 AAAATGGTGAATCTTATCTCCCTGAGTTTACAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCC
1 AAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCC
*
33916725 CTGAAGTTGCAGTGGAGCGGATT-TAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
66 CTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
* * * *
33916789 TCACATCAAGTCTTATTTCCCTGAGGTTGCAGCGGAGTAGACTAAGAAAGCAAGTCTTATCCCCC
131 TCACATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCC
* * ** * * *
33916854 TGAAGTTGAAGTGGGGCAGAAT-GAAGATTGTGAATCTTATCTCCCTGAGTTTACAGTGGAGTAG
196 TGAAGTTGAAGTGGAGCAG-ATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAG
* * * * * *
33916918 ATTAAAGCCAGTAAT-CTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCTAT
260 ATTGAAGCC-GTAATCCT-ATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTAT
* * *
33916982 CTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAG
323 CTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAG
* *
33917047 ACTGAGAAAGCAAGTCTTATCCCCCCGAAGTTGAAGTGGGGCAGACTG
388 ACTGAGAAAGCAAGTCTTATCCCCCTGAAGTTGAAGTGGGGCAGACTA
* * *
33917095 GAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATTTCT
1 AAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCC
* * * *
33917160 CTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATTTTATCTCTATGAAGTCGCAGTAGAGTGGA
66 CTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
* * * *
33917225 TCACATCAGGTCTTATTTCCTTGAGGTTGCAACAGAGCAGACTGAGAAAGCAAGTCTTATCCCCC
131 TCACATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCC
33917290 TGAAGTTG
196 TGAAGTTG
33917298 CAATGGGGCA
Statistics
Matches: 969, Mismatches: 96, Indels: 15
0.90 0.09 0.01
Matches are distributed among these distances:
434 133 0.14
435 696 0.72
436 140 0.14
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (435 bp):
AAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCC
CTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
TCACATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCC
TGAAGTTGAAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
TTGAAGCCGTAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTATCTC
TCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT
GAGAAAGCAAGTCTTATCCCCCTGAAGTTGAAGTGGGGCAGACTA
Found at i:33917313 original size:218 final size:218
Alignment explanation
Indices: 33915789--33917312 Score: 2026
Period size: 218 Copynumber: 7.0 Consensus size: 218
33915779 GGAGTAGATC
** * * * * * * * *
33915789 GAAGATGGAAAATCCTATCTCCCTAAGGTTGCAGTGGAGCAGATTGATGCCAATAATCCTATCT-
1 GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
* * * *
33915853 TCTTGAAGTTGTAGTGGAGCGGATTTAAATAACAGATATTATCTCTCTGAAGTTGCAGTAGAGTA
66 TC-TGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTA
* * *
33915918 GATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGTAGACCGA-AGAAGCATA-TCTTATC
130 GATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGA-AAGCA-AGTCTTATC
* * * *
33915981 TCCCT-AAGTAGTAGTGGAGCAGA-T
193 CCCCTGAAGTTGAAGTGGGGCAGACT
** * * * * * * *
33916005 CGAAGATGGCAAATTTTATCTCCCTGAGGTTGTAGTAGAGCAGATTGAAGCC-GCTAATCCTATC
1 -GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAG-TAATCCCATC
* * * * * *
33916069 TCTCTGAAGTTGCAGTGGAGCGAATTAAAACAACATATCTTATCTCTCTGAAGTTGCAATAGAGT
64 TCTCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGT
** * * * *
33916134 AGATCGCATCAGGTCTTATCTCCCTGAGGTTATAGTGAAGCAGACTGAGAAAACAAGTTTTATCC
129 AGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCC
33916199 CCCTGAAGTTGAAGTGGGGCAGACT
194 CCCTGAAGTTGAAGTGGGGCAGACT
* *
33916224 AAAGATGGTGAATCTTATCTTCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
1 GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
* * * *
33916289 CCTGAAGTTGTAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTGG
66 TCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
* * *
33916354 ATCACATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCT
131 ATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCC
** *
33916419 CTGAAGTTGAAGCAGAGCAGA-T
196 CTGAAGTTGAAGTGGGGCAGACT
** * * * *
33916441 CGAAGATGGCAAATCTTATCT-CCTGAGGTTGCAGTGGAGCAGATTGAAGCC-GTTAATCCTATC
1 -GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAG-TAATCCCATC
* * * *
33916504 TCTCTGAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTATGTCTCTGAAGTTGCAGTAGAGT
64 TCTCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGT
*
33916569 AGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAGCAAGTCTTATCC
129 AGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCC
* *
33916634 CCTTGAAGTTAAAGTGGGGCAGACT
194 CCCTGAAGTTGAAGTGGGGCAGACT
* * *
33916659 AAAAATGGTGAATCTTATCTCCCTGAGTTTACAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
1 GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
* *
33916724 CCTGAAGTTGCAGTGGAGCGGATT-TAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
66 TCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
* * * * *
33916788 ATCACATCAAGTCTTATTTCCCTGAGGTTGCAGCGGAGTAGACTAAGAAAGCAAGTCTTATCCCC
131 ATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCC
*
33916853 CTGAAGTTGAAGTGGGGCAGAAT
196 CTGAAGTTGAAGTGGGGCAGACT
* * *
33916876 GAAGATTGTGAATCTTATCTCCCTGAGTTTACAGTGGAGTAGATTAAAGCCAGTAATCTCATCTC
1 GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
* * *
33916941 CCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTGG
66 TCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
*
33917006 ATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCC
131 ATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCC
*
33917071 CCGAAGTTGAAGTGGGGCAGACT
196 CTGAAGTTGAAGTGGGGCAGACT
* *
33917094 GGAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATTTC
1 GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
* * * *
33917159 TCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATTTTATCTCTATGAAGTCGCAGTAGAGTGG
66 TCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
* * * * *
33917224 ATCACATCAGGTCTTATTTCCTTGAGGTTGCAACAGAGCAGACTGAGAAAGCAAGTCTTATCCCC
131 ATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCC
33917289 CTGAAGTTGCAA-TGGGGCAGACT
196 CTGAAGTTG-AAGTGGGGCAGACT
33917312 G
1 G
33917313 GGATCTTACT
Statistics
Matches: 1155, Mismatches: 138, Indels: 27
0.88 0.10 0.02
Matches are distributed among these distances:
216 2 0.00
217 553 0.48
218 595 0.52
219 5 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (218 bp):
GAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTC
TCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
ATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCC
CTGAAGTTGAAGTGGGGCAGACT
Found at i:33917684 original size:12 final size:12
Alignment explanation
Indices: 33917643--33917685 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
33917633 AATCAGAAAT
33917643 AAATAAACAAAAA
1 AAATAAA-AAAAA
33917656 AATATAAAAAATAA
1 AA-ATAAAAAA-AA
*
33917670 AAATAAAAACAA
1 AAATAAAAAAAA
33917682 AAAT
1 AAAT
33917686 TATTAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 6 0.22
13 12 0.44
14 9 0.33
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (12 bp):
AAATAAAAAAAA
Found at i:33922202 original size:18 final size:17
Alignment explanation
Indices: 33922153--33922208 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
33922143 AAAAAGATCA
33922153 TTAAATTTATTAAAAATT
1 TTAAATTT-TTAAAAATT
* * *
33922171 ATAAAACTTATAAAAATT
1 -TTAAATTTTTAAAAATT
33922189 TTAATATTTTT-AAAATT
1 TTAA-ATTTTTAAAAATT
33922206 TTA
1 TTA
33922209 GAAAAATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 12 0.40
18 12 0.40
19 6 0.20
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAAATTTTTAAAAATT
Found at i:33923479 original size:88 final size:89
Alignment explanation
Indices: 33923386--33923584 Score: 221
Period size: 85 Copynumber: 2.3 Consensus size: 89
33923376 GCTGGTTTTT
* ** ***
33923386 TTTTTTTTTTGTGCACTCAATTGGATACTTGATTTTTTAAAATGCATCAAAAAAGCCCTCAAACT
1 TTTTTTTTTTGTGCACTCAATTGGACACTTGAACTGCCAAAATGCATCAAAAAAGCCCTCAAACT
*
33923451 TTTT-TAAAGCAATTAAG-CCA--
66 TTTTAAAAAGCAATTAAGCCCAGG
* * * *
33923471 TTTGTTTTTTT-TGCACTCAGTTGGGCACTTGAACTGCCAAAATGTATCAAAAAGGCCCTCAAAC
1 TTT-TTTTTTTGTGCACTCAATTGGACACTTGAACTGCCAAAATGCATCAAAAAAGCCCTCAAAC
33923535 TTTTTCGAAAAAGCAATTAAGCCCCAGG
65 TTTTT--AAAAAGCAATTAAG-CCCAGG
33923563 TTTTTTTTTTG-GCACTCAATTG
1 TTTTTTTTTTGTGCACTCAATTG
33923585 CCAAAATTCA
Statistics
Matches: 93, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
85 51 0.55
86 7 0.08
88 12 0.13
90 3 0.03
91 17 0.18
92 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (89 bp):
TTTTTTTTTTGTGCACTCAATTGGACACTTGAACTGCCAAAATGCATCAAAAAAGCCCTCAAACT
TTTTAAAAAGCAATTAAGCCCAGG
Found at i:33923746 original size:9 final size:9
Alignment explanation
Indices: 33923734--33923766 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
33923724 AAAATCAATA
33923734 AAATTTATT
1 AAATTTATT
33923743 AAATTTATT
1 AAATTTATT
33923752 AAATTTATT
1 AAATTTATT
33923761 AAATTT
1 AAATTT
33923767 TAATTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
AAATTTATT
Found at i:33923746 original size:18 final size:18
Alignment explanation
Indices: 33923725--33923764 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
33923715 TAAAAAATAA
33923725 AAATCAATAAAATTTATT
1 AAATCAATAAAATTTATT
** *
33923743 AAATTTATTAAATTTATT
1 AAATCAATAAAATTTATT
33923761 AAAT
1 AAAT
33923765 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATCAATAAAATTTATT
Found at i:33923780 original size:20 final size:18
Alignment explanation
Indices: 33923739--33923783 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
33923729 CAATAAAATT
**
33923739 TATTAAATTTATTAAATT
1 TATTAAATTTATTAAAAA
33923757 TATTAAATTTTAATTAAAAA
1 TATTAAA-TTT-ATTAAAAA
33923777 TATTAAA
1 TATTAAA
33923784 AATACTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 7 0.30
19 3 0.13
20 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTAAATTTATTAAAAA
Found at i:33923802 original size:19 final size:19
Alignment explanation
Indices: 33923780--33923824 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
33923770 TTAAAAATAT
* *
33923780 TAAAAATACTTAATTTTTA
1 TAAAAATACTAAAATTTTA
**
33923799 TAAAAATTGTAAAATTTTA
1 TAAAAATACTAAAATTTTA
33923818 TAAAAAT
1 TAAAAAT
33923825 CGTAAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
TAAAAATACTAAAATTTTA
Found at i:33923829 original size:19 final size:19
Alignment explanation
Indices: 33923794--33923841 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
33923784 AATACTTAAT
*
33923794 TTTTATAAAAATTGTAAAA
1 TTTTATAAAAATCGTAAAA
33923813 TTTTATAAAAATCGTAAAA
1 TTTTATAAAAATCGTAAAA
**
33923832 AATTATAAAA
1 TTTTATAAAA
33923842 TATAGAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (19 bp):
TTTTATAAAAATCGTAAAA
Found at i:33923913 original size:20 final size:22
Alignment explanation
Indices: 33923879--33923938 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
33923869 TTTTATAAAG
33923879 TCGTAAGAA-AATTATAAAAAAA
1 TCGTAA-AAGAATTATAAAAAAA
*
33923901 T-GT-AAAGAATTAT-AAAAAT
1 TCGTAAAAGAATTATAAAAAAA
33923920 TCGTAAAAGAATTATAAAA
1 TCGTAAAAGAATTATAAAA
33923939 CTTATCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 8 0.24
20 9 0.27
21 12 0.36
22 4 0.12
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (22 bp):
TCGTAAAAGAATTATAAAAAAA
Found at i:33928354 original size:24 final size:26
Alignment explanation
Indices: 33928310--33928371 Score: 74
Period size: 24 Copynumber: 2.4 Consensus size: 26
33928300 CTCAAAGCCT
* *
33928310 TAGCCGAATCTCCATCCTCA-TTCACC
1 TAGCC-AATTTCCATCATCATTTCACC
*
33928336 TAGCC-ATTTCCATCATCATTTCACT
1 TAGCCAATTTCCATCATCATTTCACC
33928361 TAGCCAATTTC
1 TAGCCAATTTC
33928372 AGCCCTTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 11 0.35
25 10 0.32
26 10 0.32
ACGTcount: A:0.24, C:0.35, G:0.06, T:0.34
Consensus pattern (26 bp):
TAGCCAATTTCCATCATCATTTCACC
Found at i:33928621 original size:29 final size:29
Alignment explanation
Indices: 33928578--33928654 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
33928568 CTTTTTATGC
*
33928578 ATTTTATAAT-TTTTTTCTAATTTTTAGTAA
1 ATTTTA-AATATTTTTTAT-ATTTTTAGTAA
*
33928608 ATTTTAAATATTTTTTATATTTTTATTAA
1 ATTTTAAATATTTTTTATATTTTTAGTAA
* *
33928637 AGTTT-AATAATTTTTATA
1 ATTTTAAATATTTTTTATA
33928655 ACTTTAATTG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 12 0.29
29 17 0.40
30 13 0.31
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (29 bp):
ATTTTAAATATTTTTTATATTTTTAGTAA
Found at i:33928660 original size:28 final size:29
Alignment explanation
Indices: 33928600--33928660 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
33928590 TTTTCTAATT
* * **
33928600 TTTAGTAAATTTTAAATATTTTTTATATT
1 TTTAGTAAAGTTTAAATAATTTTTATAAC
*
33928629 TTTATTAAAGTTT-AATAATTTTTATAAC
1 TTTAGTAAAGTTTAAATAATTTTTATAAC
33928657 TTTA
1 TTTA
33928661 ATTGATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTAGTAAAGTTTAAATAATTTTTATAAC
Found at i:33933777 original size:18 final size:18
Alignment explanation
Indices: 33933754--33933796 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
33933744 ACCACTGCCC
**
33933754 CTTCTTCCTCACTTACAT
1 CTTCTTCCTCACCGACAT
33933772 CTTCTTCCTCACCGACAT
1 CTTCTTCCTCACCGACAT
33933790 CTTCTTC
1 CTTCTTC
33933797 TTCAATTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.42, G:0.02, T:0.42
Consensus pattern (18 bp):
CTTCTTCCTCACCGACAT
Found at i:33939545 original size:102 final size:101
Alignment explanation
Indices: 33939401--33939705 Score: 348
Period size: 102 Copynumber: 3.0 Consensus size: 101
33939391 TTAAAATATT
* * * * *
33939401 TATTTTTTTAATATTTTACTATACCATTATAGGATACTTGTCAACCCTTAACTTTACTTATGCAA
1 TATTTTTTAAATATTTTACTATACCATTATAGGATACTTGTCAACCCCTAACTTT-CTTGTGGAG
*
33939466 TCTAAAATCTCCACTAGTAATGTATCAAATAAATTTTC
65 TCTAAAAACTCCACTAGTAATGTA-CAAATAAATTTTC
*
33939504 TATTTTTTAAATATTTTACTATACC-CTATAGGATACTTGTC-ACCCACTAACTTTGCTTGTGGA
1 TATTTTTTAAATATTTTACTATACCATTATAGGATACTTGTCAACCC-CTAACTTT-CTTGTGGA
* * ** ** *
33939567 GTCTAAAACCTTCACCGGCCATGTGCCAAAT-AATTTTC
64 GTCTAAAAACTCCACTAGTAATGT-ACAAATAAATTTTC
* * * * *
33939605 TATTTTTAAAATATTTTACTATACCTTTATAGGACATTTGTCAACCGCCTAACTTTCTTGTGGTG
1 TATTTTTTAAATATTTTACTATACCATTATAGGATACTTGTCAACC-CCTAACTTTCTTGTGGAG
*
33939670 TCTAAAAACTCCACTAGTAATGTACAAA-ATATTTTC
65 TCTAAAAACTCCACTAGTAATGTACAAATAAATTTTC
33939706 CCTTAATTTA
Statistics
Matches: 169, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
101 45 0.27
102 88 0.52
103 35 0.21
104 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.40
Consensus pattern (101 bp):
TATTTTTTAAATATTTTACTATACCATTATAGGATACTTGTCAACCCCTAACTTTCTTGTGGAGT
CTAAAAACTCCACTAGTAATGTACAAATAAATTTTC
Found at i:33941691 original size:31 final size:31
Alignment explanation
Indices: 33941653--33941714 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
33941643 TCAATGTGTG
*
33941653 ACATTTAAACTGTACAAGCCCCTTTTGGAGT
1 ACATTTAAACTATACAAGCCCCTTTTGGAGT
33941684 ACATTTAAACTATACAAGCCCCTTTTGGAGT
1 ACATTTAAACTATACAAGCCCCTTTTGGAGT
33941715 GCATGAATGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (31 bp):
ACATTTAAACTATACAAGCCCCTTTTGGAGT
Found at i:33942288 original size:39 final size:38
Alignment explanation
Indices: 33942172--33942288 Score: 135
Period size: 39 Copynumber: 3.0 Consensus size: 38
33942162 TTAAAACATG
* * * * *
33942172 TATTAAAGATGTCCTAAACTATGACATAATTAAAACCCT
1 TATTAATGATGTTC-AAATTATGACATAATTAAAACTCA
* *
33942211 TATTAATGTTGTTCAGATTATGACATAATTAAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATT-AAAACTCA
*
33942250 TATTTATGATGTTCAAATTATGACATAATTAAAGACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAA-ACTCA
33942289 AACTAAATTA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
38 17 0.26
39 49 0.74
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (38 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAACTCA
Found at i:33943900 original size:25 final size:25
Alignment explanation
Indices: 33943866--33943924 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
33943856 TCTTTCTACA
*
33943866 TAAAAGAAATTAAGTATAAATAAAT
1 TAAAAGAAATTAAATATAAATAAAT
33943891 TAAAAGAAATTAAATATAAATAAAT
1 TAAAAGAAATTAAATATAAATAAAT
33943916 TAAAAGAAA
1 TAAAAGAAA
33943925 AACATTTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (25 bp):
TAAAAGAAATTAAATATAAATAAAT
Found at i:33946423 original size:4 final size:4
Alignment explanation
Indices: 33946414--33946440 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
33946404 AAACTAAGTA
33946414 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
33946441 AATAAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:33947388 original size:34 final size:34
Alignment explanation
Indices: 33947345--33947413 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
33947335 CTAAACCTCA
33947345 CAAGGATACAAGGTTGTTTATTGAGTAGGGCTCT
1 CAAGGATACAAGGTTGTTTATTGAGTAGGGCTCT
33947379 CAAGGATACAAGGTTGTTTATTGAGTAGGGCTCT
1 CAAGGATACAAGGTTGTTTATTGAGTAGGGCTCT
33947413 C
1 C
33947414 CGCACAACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (34 bp):
CAAGGATACAAGGTTGTTTATTGAGTAGGGCTCT
Found at i:33948928 original size:20 final size:21
Alignment explanation
Indices: 33948903--33948941 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33948893 TTTAGTTACA
33948903 AATAATTA-AATATAAATATT
1 AATAATTATAATATAAATATT
*
33948923 AATAATTATATTATAAATA
1 AATAATTATAATATAAATA
33948942 AAATAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATAATTATAATATAAATATT
Found at i:33948946 original size:20 final size:20
Alignment explanation
Indices: 33948902--33948947 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
33948892 TTTTAGTTAC
33948902 AAATAATTAAATATAAATAT
1 AAATAATTAAATATAAATAT
* *
33948922 TAATAATTATATTATAAATA-
1 AAATAATTA-AATATAAATAT
33948942 AAATAA
1 AAATAA
33948948 ATACACAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATAATTAAATATAAATAT
Found at i:33953717 original size:14 final size:15
Alignment explanation
Indices: 33953698--33953726 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33953688 TATTAATTAA
33953698 ATATTTT-ATATTTT
1 ATATTTTAATATTTT
33953712 ATATTTTAATATTTT
1 ATATTTTAATATTTT
33953727 GAATCTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATATTTTAATATTTT
Found at i:33957992 original size:19 final size:19
Alignment explanation
Indices: 33957952--33957992 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
33957942 CTTCATTCCT
* **
33957952 TTGGAATCTTTTACCCTTG
1 TTGGAATCTTCTACCCAAG
33957971 TTGGAATCTTCTACCCAAG
1 TTGGAATCTTCTACCCAAG
33957990 TTG
1 TTG
33957993 CAAACATGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.41
Consensus pattern (19 bp):
TTGGAATCTTCTACCCAAG
Found at i:33959209 original size:134 final size:134
Alignment explanation
Indices: 33958951--33959192 Score: 294
Period size: 134 Copynumber: 1.8 Consensus size: 134
33958941 TACCGAATAG
* * *
33958951 AAGGTATCGATACCGTATCGATACTTGATAAATACTTTGAAAGTCAGAATACCAATTCCGTATTG
1 AAGGTATCGATACCGTATCGATACTTGATAAATACTTGGAAAGACAAAATACCAATTCCGTATTG
* * *
33959016 ATACTGAAAAAGGTACAGGTAAAAGTGTATCACTATCAATTCTCGAAAAATTTTATCGATACCAA
66 ATACTGAAAAAGGTACAGATAAAAGTGTATAACTATCAATACTCGAAAAATTTTATCGATACCAA
33959081 GCAA
131 GCAA
* * * * *
33959085 AAGGTATCGATACCGTATTGATACTTGGTAAATACCTTGGAAA-ACAAAATGCCATTTTCGTATT
1 AAGGTATCGATACCGTATCGATACTTGATAAATA-CTTGGAAAGACAAAATACCAATTCCGTATT
* * *
33959149 GATA-TCGAAAAATGTATC-GATAAAATTGTA-AATCTATCGATACT
65 GATACT-GAAAAAGGTA-CAGATAAAAGTGTATAA-CTATCAATACT
33959193 TAATTAAATT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
133 2 0.02
134 80 0.89
135 8 0.09
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (134 bp):
AAGGTATCGATACCGTATCGATACTTGATAAATACTTGGAAAGACAAAATACCAATTCCGTATTG
ATACTGAAAAAGGTACAGATAAAAGTGTATAACTATCAATACTCGAAAAATTTTATCGATACCAA
GCAA
Found at i:33964254 original size:36 final size:37
Alignment explanation
Indices: 33964187--33964351 Score: 183
Period size: 36 Copynumber: 4.5 Consensus size: 37
33964177 GTGTTTTTGT
* *
33964187 TGGATTAGCTCTTATGAGCAATTGGTATGTTATCGGG
1 TGGATTAGCTCTTATGAGCGATTGGCATGTTATCGGG
* *
33964224 TGGATTAACTCTTATGAGC-ATTGGCATGTTATCAGG
1 TGGATTAGCTCTTATGAGCGATTGGCATGTTATCGGG
* * * *
33964260 TGGATTAGCTCTTATGAGCGACT-G-ATGTGTTTTGGT
1 TGGATTAGCTCTTATGAGCGATTGGCATGT-TATCGGG
* * * *
33964296 TGGATTAGTTCCTATGAGCGATTGACGTGTTATCGGG
1 TGGATTAGCTCTTATGAGCGATTGGCATGTTATCGGG
*
33964333 TGGATTAACTCTTATGAGC
1 TGGATTAGCTCTTATGAGC
33964352 AACTGGCGCT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
35 4 0.04
36 57 0.55
37 40 0.38
38 3 0.03
ACGTcount: A:0.21, C:0.13, G:0.28, T:0.38
Consensus pattern (37 bp):
TGGATTAGCTCTTATGAGCGATTGGCATGTTATCGGG
Found at i:33964370 original size:73 final size:71
Alignment explanation
Indices: 33964187--33964375 Score: 209
Period size: 73 Copynumber: 2.6 Consensus size: 71
33964177 GTGTTTTTGT
* * * * *
33964187 TGGATTAGCTCTTATGAGCAATTGGTATGTTATCGGGTGGATTAACTCTTATGAGCATTGGCATG
1 TGGATTAGCTCTTATGAGCAACTGG--TGTTTTCGGTTGGATTAACTCCTATGAGCATTGACATG
33964252 TTATCAGG
64 TTATCAGG
* ** *
33964260 TGGATTAGCTCTTATGAGCGACTGATGTGTTTT-GGTTGGATTAGTTCCTATGAGCGATTGACGT
1 TGGATTAGCTCTTATGAGCAACTG--GTGTTTTCGGTTGGATTAACTCCTATGAGC-ATTGACAT
*
33964324 GTTATCGGG
63 GTTATCAGG
* *
33964333 TGGATTAACTCTTATGAGCAACTGGCGCTTTTCGGTTGGATTA
1 TGGATTAGCTCTTATGAGCAACTGGTG-TTTTCGGTTGGATTA
33964376 CTTGTGTACT
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
71 2 0.02
72 22 0.22
73 73 0.74
75 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.38
Consensus pattern (71 bp):
TGGATTAGCTCTTATGAGCAACTGGTGTTTTCGGTTGGATTAACTCCTATGAGCATTGACATGTT
ATCAGG
Found at i:33965414 original size:54 final size:54
Alignment explanation
Indices: 33965339--33965465 Score: 164
Period size: 54 Copynumber: 2.4 Consensus size: 54
33965329 CATGTGTTCT
* * * * * *
33965339 AACTCAGTGGGTTACACGGTCTAGCACATGGCTTGCGACACGGCCTTGTGTCAC
1 AACTCAGAGAGTTACACGGTCTAGCACATGGCCTGCGACACGACCATGTGGCAC
* * *
33965393 AAGTCAGAGAGTTACATGGTCTAGCACATGGCCTGCGACACGACCATGTGGCTC
1 AACTCAGAGAGTTACACGGTCTAGCACATGGCCTGCGACACGACCATGTGGCAC
*
33965447 AACTCAGTGAGTTACACGG
1 AACTCAGAGAGTTACACGG
33965466 GCTAAGACAC
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (54 bp):
AACTCAGAGAGTTACACGGTCTAGCACATGGCCTGCGACACGACCATGTGGCAC
Found at i:33966592 original size:6 final size:6
Alignment explanation
Indices: 33966581--33966611 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
33966571 TTTCTCCAAG
*
33966581 ATGAAA ATGAAA ATGAAA ATAAAA ATGAAA A
1 ATGAAA ATGAAA ATGAAA ATGAAA ATGAAA A
33966612 AAGAAAAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (6 bp):
ATGAAA
Found at i:33968079 original size:14 final size:14
Alignment explanation
Indices: 33968060--33968086 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33968050 TTTTGGGTGA
33968060 ATTTTGTAATTTAT
1 ATTTTGTAATTTAT
33968074 ATTTTGTAATTTA
1 ATTTTGTAATTTA
33968087 CTTTTCTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (14 bp):
ATTTTGTAATTTAT
Found at i:33970657 original size:20 final size:20
Alignment explanation
Indices: 33970632--33970670 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33970622 TCGTTTCTTC
33970632 TTTACTTACATT-CTTACTTG
1 TTTACTTAC-TTGCTTACTTG
33970652 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
33970671 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.18, C:0.21, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:33970993 original size:50 final size:49
Alignment explanation
Indices: 33970873--33971052 Score: 193
Period size: 50 Copynumber: 3.6 Consensus size: 49
33970863 GATAATAACA
* * * * * * *
33970873 TGCCAAAGCCATGTCTCAAACATGGTCTTACATGGGATGTTTCCTGT-AC
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGA-GTTTCATATCAG
* *
33970922 TGCCAATGCCATATCCCAGATATTGTCTTACATGGGAGTTATCATATCAG
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGAGTT-TCATATCAG
* *
33970972 TGCCAATGCCTTGTCCTAGATATGGTCTTACATGGGAGTTCTCATATC-G
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGAGTT-TCATATCAG
* *
33971021 ATGCCCATGCCATGTCCCAGACATGGTCTTAC
1 -TGCCAATGCCATGTCCCAGATATGGTCTTAC
33971053 GGGAGACCTC
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
48 3 0.03
49 36 0.33
50 71 0.65
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGAGTTTCATATCAG
Found at i:33971065 original size:50 final size:50
Alignment explanation
Indices: 33970922--33971158 Score: 180
Period size: 50 Copynumber: 4.6 Consensus size: 50
33970912 TTTCCTGTAC
* * * * *
33970922 TGCCAATGCCATATCCCAGATATTGTCTTACATGGGAG--TTATCATATC-A
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC--GGGAGACCTCTCATATCGA
* * * *
33970971 GTGCCAATGCCTTGTCCTAGATATGGTCTTACATGGGAG--TTCTCATATCGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTAC--GGGAGACCTCTCATATCGA
* * *
33971022 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATCTTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATATCGA
* * * *
33971072 TGCCAACGCCATGTCCCAGACATAGTCTTATGTGGA-ACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACG-GGAGACCTCTCAT-A--TC---GA
33971128 TGCCAATGCCATGTCCCAGACATGGTCTTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC
33971159 ATGGGATCTT
Statistics
Matches: 155, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
48 5 0.03
50 116 0.75
51 4 0.03
53 1 0.01
56 29 0.19
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATATCGA
Found at i:33985427 original size:50 final size:50
Alignment explanation
Indices: 33985352--33985534 Score: 215
Period size: 50 Copynumber: 3.7 Consensus size: 50
33985342 AATAGATCCC
* * *
33985352 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCT
1 ATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCT
* * * *
33985402 ATGTAAGACCATGTCTCGGACATGGCGTTGGCACCAAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCT
** * * * **
33985452 CCGTAAGACCATGTCTGGGACATGACATGGGCACCTATATGAGAACT-CT
1 ATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCT
*
33985501 CATGTAAGACCATATCTGGGACATGACATTGGCA
1 -ATGTAAGACCATGTCTGGGACATGACATTGGCA
33985535 ATACAAGAAA
Statistics
Matches: 114, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 1 0.01
50 113 0.99
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCT
Found at i:33985533 original size:100 final size:100
Alignment explanation
Indices: 33985354--33985534 Score: 247
Period size: 100 Copynumber: 1.8 Consensus size: 100
33985344 TAGATCCCAT
* * * ** *
33985354 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCTATGTAAGACCATGTCTC
1 GTAAGACCATGTCTGGGACATGACATGGGCACCGAGATGAGAACTCCTATGTAAGACCATATCTC
* *
33985419 GGACATGGCGTTGGCACCAAGATGAGAGGTCCCCC
66 GGACATGACATTGGCACCAAGATGAGAGGTCCCCC
* *
33985454 GTAAGACCATGTCTGGGACATGACATGGGCACCTATATGAGAACT-CTCATGTAAGACCATATCT
1 GTAAGACCATGTCTGGGACATGACATGGGCACCGAGATGAGAACTCCT-ATGTAAGACCATATCT
*
33985518 GGGACATGACATTGGCA
65 CGGACATGACATTGGCA
33985535 ATACAAGAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
99 2 0.03
100 67 0.97
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (100 bp):
GTAAGACCATGTCTGGGACATGACATGGGCACCGAGATGAGAACTCCTATGTAAGACCATATCTC
GGACATGACATTGGCACCAAGATGAGAGGTCCCCC
Found at i:33985573 original size:49 final size:50
Alignment explanation
Indices: 33985456--33985573 Score: 141
Period size: 49 Copynumber: 2.4 Consensus size: 50
33985446 GGTCCCCCGT
* * * * *
33985456 AAGACCATGTCTGGGACATGACATGGGCACCTATATGAGAACTCTCATGT
1 AAGACCATGTCTGGGACATGACATGGGCACATACAAGAGAACTCCCATGC
* *
33985506 AAGACCATATCTGGGACATGACATTGGCA-ATACAAGA-AACATCCCATGC
1 AAGACCATGTCTGGGACATGACATGGGCACATACAAGAGAAC-TCCCATGC
*
33985555 AAGACTATGTCTGGGACAT
1 AAGACCATGTCTGGGACAT
33985574 AGCTTTGGCA
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.05
49 28 0.48
50 27 0.47
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (50 bp):
AAGACCATGTCTGGGACATGACATGGGCACATACAAGAGAACTCCCATGC
Found at i:33994499 original size:25 final size:26
Alignment explanation
Indices: 33994466--33994519 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
33994456 CTCATCCTTA
*
33994466 TTTACCCCA-ACAAAATTTTGGTGAT
1 TTTACCCCATACAAAATTTTGATGAT
* **
33994491 TTTATCCCATGTAAAATTTTGATGAT
1 TTTACCCCATACAAAATTTTGATGAT
33994517 TTT
1 TTT
33994520 GACCTTGATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (26 bp):
TTTACCCCATACAAAATTTTGATGAT
Found at i:34025036 original size:50 final size:49
Alignment explanation
Indices: 34024926--34025104 Score: 175
Period size: 50 Copynumber: 3.6 Consensus size: 49
34024916 GGTAAAGAGA
* * * **
34024926 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGC-ATGGCACCGACATGAGAAC
* *
34024976 T-CCACCGTAAGACCATGTCTAGGACATGGCATGGACACCGATATGAGAAC
1 TCCCA-TGTAAGACCATGTCTAGGACATGGCATGG-CACCGACATGAGAAC
* * * * *
34025026 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGC-ACAAGA-AAC
1 TCCCATGTAAGACCATGTCTAGGACATGGCA-TGGCACCGACATGAGAAC
*
34025074 ATCCCATATAAGACCATGTCTAGGACATGGC
1 -TCCCATGTAAGACCATGTCTAGGACATGGC
34025105 TTTGGCATGT
Statistics
Matches: 107, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
48 3 0.03
49 36 0.34
50 62 0.58
51 6 0.06
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTAGGACATGGCATGGCACCGACATGAGAAC
Found at i:34048510 original size:46 final size:46
Alignment explanation
Indices: 34048443--34048711 Score: 423
Period size: 46 Copynumber: 5.8 Consensus size: 46
34048433 AGTGTGGAAC
34048443 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
*
34048489 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAGAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
* *
34048535 GTAGGTATGGTATTTCAGTAACGAAAACCATACCGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
* * * * *
34048581 GTAGGTATGGTATTTCAATGAAGAATACTATACTGAGTTGCGAAAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
*
34048627 GTAGGTATGGTATTTCGGTAAAGAAAACCATA-TAGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACT-GAGTTGTGAAAA
* *
34048673 GTAGGTATGGTATTTCCGTGAAGAAAACCATACTGAGTT
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTT
34048712 ATAGCCTTGT
Statistics
Matches: 202, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 200 0.99
47 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (46 bp):
GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
Found at i:34049034 original size:2 final size:2
Alignment explanation
Indices: 34049027--34049053 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
34049017 TAGATTGATG
34049027 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
34049054 TCGGAGGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34051583 original size:22 final size:22
Alignment explanation
Indices: 34051555--34051615 Score: 113
Period size: 22 Copynumber: 2.8 Consensus size: 22
34051545 TGTTGATAGT
*
34051555 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTA
34051577 ACGTACTAAGCTCTCATGTTTA
1 ACGTACTAAGCTCTCATGTTTA
34051599 ACGTACTAAGCTCTCAT
1 ACGTACTAAGCTCTCAT
34051616 ACCATATTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (22 bp):
ACGTACTAAGCTCTCATGTTTA
Found at i:34055516 original size:25 final size:25
Alignment explanation
Indices: 34055488--34055575 Score: 88
Period size: 25 Copynumber: 3.4 Consensus size: 25
34055478 TGCGGTAAGG
34055488 GGGTTCGCCAGATTCATTACACGTT
1 GGGTTCGCCAGATTCATTACACGTT
** ****
34055513 GGGTTCGCCAG-TTGGTTTGGTGATCT
1 GGGTTCGCCAGATTCATTACACG-T-T
34055539 GGAGTTCGCCAGATTCATTACACGTT
1 GG-GTTCGCCAGATTCATTACACGTT
34055565 GGGTTCGCCAG
1 GGGTTCGCCAG
34055576 TTAGTTTGGT
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
24 5 0.11
25 21 0.45
26 6 0.13
27 10 0.21
28 5 0.11
ACGTcount: A:0.16, C:0.22, G:0.31, T:0.32
Consensus pattern (25 bp):
GGGTTCGCCAGATTCATTACACGTT
Found at i:34055552 original size:52 final size:52
Alignment explanation
Indices: 34055490--34055602 Score: 217
Period size: 52 Copynumber: 2.2 Consensus size: 52
34055480 CGGTAAGGGG
*
34055490 GTTCGCCAGATTCATTACACGTTGGGTTCGCCAGTTGGTTTGGTGATCTGGA
1 GTTCGCCAGATTCATTACACGTTGGGTTCGCCAGTTAGTTTGGTGATCTGGA
34055542 GTTCGCCAGATTCATTACACGTTGGGTTCGCCAGTTAGTTTGGTGATCTGGA
1 GTTCGCCAGATTCATTACACGTTGGGTTCGCCAGTTAGTTTGGTGATCTGGA
34055594 GTTCGCCAG
1 GTTCGCCAG
34055603 TTGAGTTGCG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.16, C:0.20, G:0.30, T:0.34
Consensus pattern (52 bp):
GTTCGCCAGATTCATTACACGTTGGGTTCGCCAGTTAGTTTGGTGATCTGGA
Found at i:34058337 original size:18 final size:18
Alignment explanation
Indices: 34058314--34058375 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
34058304 CTTTGTCTTC
34058314 ATCTTCACCTCGAGCTCT
1 ATCTTCACCTCGAGCTCT
* **
34058332 ATCTTCATCTTCTTTG-TCTT
1 ATCTTCA-CCTC-GAGCTC-T
34058352 CATCTTCACCTCGAGCTCT
1 -ATCTTCACCTCGAGCTCT
34058371 ATCTT
1 ATCTT
34058376 TATCTTCATA
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
18 12 0.36
19 7 0.21
20 7 0.21
21 7 0.21
ACGTcount: A:0.15, C:0.34, G:0.08, T:0.44
Consensus pattern (18 bp):
ATCTTCACCTCGAGCTCT
Found at i:34058384 original size:45 final size:39
Alignment explanation
Indices: 34058297--34058382 Score: 163
Period size: 39 Copynumber: 2.2 Consensus size: 39
34058287 TTCTGGCTAC
34058297 TCATCTTCTTTGTCTTCATCTTCACCTCGAGCTCTATCT
1 TCATCTTCTTTGTCTTCATCTTCACCTCGAGCTCTATCT
34058336 TCATCTTCTTTGTCTTCATCTTCACCTCGAGCTCTATCT
1 TCATCTTCTTTGTCTTCATCTTCACCTCGAGCTCTATCT
*
34058375 TTATCTTC
1 TCATCTTC
34058383 ATATCCTTCT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.13, C:0.33, G:0.07, T:0.48
Consensus pattern (39 bp):
TCATCTTCTTTGTCTTCATCTTCACCTCGAGCTCTATCT
Found at i:34067463 original size:27 final size:27
Alignment explanation
Indices: 34067397--34067453 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
34067387 TTCCGAGAAC
34067397 TTATTCCCTAAATGAAAAAATAAATTT
1 TTATTCCCTAAATGAAAAAATAAATTT
*
34067424 TTATTCCCTAAATGACAAAATAAATTT
1 TTATTCCCTAAATGAAAAAATAAATTT
34067451 TTA
1 TTA
34067454 GTTTTCAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.39
Consensus pattern (27 bp):
TTATTCCCTAAATGAAAAAATAAATTT
Found at i:34067693 original size:22 final size:19
Alignment explanation
Indices: 34067668--34067709 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
34067658 TGATACTAAT
34067668 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
34067690 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
34067709 T
1 T
34067710 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:34068467 original size:25 final size:26
Alignment explanation
Indices: 34068414--34068467 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
34068404 TTCTCCTAAA
*
34068414 TTTCAATTTTATTTAATTATTTAATT
1 TTTCAATTTTATTGAATTATTTAATT
*
34068440 TTTCAA-TTTCTTGAATTA-TTAATAT
1 TTTCAATTTTATTGAATTATTTAAT-T
34068465 TTT
1 TTT
34068468 ATGCTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 14 0.56
26 6 0.24
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTCAATTTTATTGAATTATTTAATT
Found at i:34075844 original size:25 final size:25
Alignment explanation
Indices: 34075816--34075961 Score: 159
Period size: 25 Copynumber: 5.8 Consensus size: 25
34075806 TTATGGCATG
*
34075816 TTATCTGTAAAGCCTTTGTGGCGAA
1 TTATCTGAAAAGCCTTTGTGGCGAA
* *
34075841 TTAT-TAGAAAAGCTTTTGTGGCGAG
1 TTATCT-GAAAAGCCTTTGTGGCGAA
* * *
34075866 TTATTTGTAAAGCTTTTGTGGCGAA
1 TTATCTGAAAAGCCTTTGTGGCGAA
* **
34075891 ATATCAAAAAAGCCTTTGTGGCGAA
1 TTATCTGAAAAGCCTTTGTGGCGAA
*
34075916 TTATCAGAAAAGCCTTTGTGGCGAA
1 TTATCTGAAAAGCCTTTGTGGCGAA
* **
34075941 TTATCTAAAAATTCTTTGTGG
1 TTATCTGAAAAGCCTTTGTGG
34075962 TGTATTGTAT
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
24 1 0.01
25 100 0.98
26 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (25 bp):
TTATCTGAAAAGCCTTTGTGGCGAA
Found at i:34075875 original size:50 final size:50
Alignment explanation
Indices: 34075815--34075961 Score: 186
Period size: 50 Copynumber: 2.9 Consensus size: 50
34075805 TTTATGGCAT
* * *
34075815 GTTATCTGTAAAGCCTTTGTGGCGAATTATTAGAAAAGCTTTTGTGGCGA
1 GTTATCTGTAAAGCCTTTGTGGCGAATTATCAAAAAAGCCTTTGTGGCGA
* * *
34075865 GTTATTTGTAAAGCTTTTGTGGCGAAATATCAAAAAAGCCTTTGTGGCGA
1 GTTATCTGTAAAGCCTTTGTGGCGAATTATCAAAAAAGCCTTTGTGGCGA
* * * * **
34075915 ATTATCAGAAAAGCCTTTGTGGCGAATTATCTAAAAATTCTTTGTGG
1 GTTATCTGTAAAGCCTTTGTGGCGAATTATCAAAAAAGCCTTTGTGG
34075962 TGTATTGTAT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 82 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.35
Consensus pattern (50 bp):
GTTATCTGTAAAGCCTTTGTGGCGAATTATCAAAAAAGCCTTTGTGGCGA
Found at i:34078290 original size:39 final size:38
Alignment explanation
Indices: 34078222--34078298 Score: 86
Period size: 39 Copynumber: 2.0 Consensus size: 38
34078212 CTTAGCTCTC
34078222 TTTTTTTATTAAAATTATCTTAATATTTTT-GTAAATTA
1 TTTTTTTATTAAAATTATCTTAATATTTTTCG-AAATTA
* * *
34078260 TTTTTTCTATTACAATTTAT-TTCATTTTTTTCGAAATTA
1 TTTTTT-TATTA-AAATTATCTTAATATTTTTCGAAATTA
34078299 ACAATGGCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
38 6 0.18
39 20 0.61
40 7 0.21
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (38 bp):
TTTTTTTATTAAAATTATCTTAATATTTTTCGAAATTA
Found at i:34085528 original size:50 final size:50
Alignment explanation
Indices: 34085474--34085704 Score: 257
Period size: 50 Copynumber: 4.6 Consensus size: 50
34085464 TGTGAGCCAT
* *
34085474 GTAAGACCATGTCTGAGACATGGCGTTGGTACCAAGATGAGAGGTCCCAA
1 GTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCAA
* * * * *
34085524 GTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGGTCTCAT
1 GTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCAA
* **
34085574 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCAA
* * * ** * *
34085624 GTAAGACCATGTCT-AGGACATGGCATGGGCACCGATATGAGAACTCTCAT
1 GTAAGACCATGTCTGA-GACATGGCGTTGGCACCGAGATGAGAGGTCCCAA
* * * *
34085674 GTAAGACCATATCTGGGATATGGCATTGGCA
1 GTAAGACCATGTCTGAGACATGGCGTTGGCA
34085705 GTACAGAAAA
Statistics
Matches: 154, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
50 154 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
GTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCAA
Found at i:34085644 original size:100 final size:100
Alignment explanation
Indices: 34085471--34085704 Score: 342
Period size: 100 Copynumber: 2.3 Consensus size: 100
34085461 ATATGTGAGC
* *
34085471 CATGTAAGACCATGTCTGAGACATGGCGTTGGTACCAAGATGAGAGGTCCCAAGTAAGACCATGT
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCAAGTAAGACCATGT
* * * **
34085536 TTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
66 CTAGGACATGGCATGGGCACCGAGATGAGAACTCT
* **
34085571 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCAAGTAAGACCATGT
*
34085636 CTAGGACATGGCATGGGCACCGATATGAGAACTCT
66 CTAGGACATGGCATGGGCACCGAGATGAGAACTCT
* * *
34085671 CATGTAAGACCATATCTGGGATATGGCATTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCA
34085705 GTACAGAAAA
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 120 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (100 bp):
CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCAAGTAAGACCATGT
CTAGGACATGGCATGGGCACCGAGATGAGAACTCT
Found at i:34085738 original size:49 final size:49
Alignment explanation
Indices: 34085471--34085753 Score: 203
Period size: 50 Copynumber: 5.7 Consensus size: 49
34085461 ATATGTGAGC
* * * * * ** *
34085471 CATGTAAGACCATGTCTGAGACATGGCGTTGGTACCA-AGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACGATA-A-GAAAACTCT
* * * * * **
34085521 CAAGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGATAAGAAAACTCT
* * * * ** *
34085571 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGATAAGAAAACTCT
** * * * *
34085621 CCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGATAAGAAAACTCT
* *
34085671 CATGTAAGACCATATCTGGGATATGGCATTGGCA-G-TACAGAAAACATCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACGATA-AGAAAAC-TCT
*
34085720 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
34085754 TGTTATTATC
Statistics
Matches: 197, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
47 2 0.01
48 6 0.03
49 34 0.17
50 152 0.77
51 2 0.01
52 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (49 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACGATAAGAAAACTCT
Found at i:34087451 original size:11 final size:12
Alignment explanation
Indices: 34087436--34087466 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
34087426 TAAATGATAT
34087436 TTTATTATTTTA
1 TTTATTATTTTA
34087448 -TTATTATTTTA
1 TTTATTATTTTA
34087459 TTTATTAT
1 TTTATTAT
34087467 ATATATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:34089837 original size:51 final size:51
Alignment explanation
Indices: 34089758--34089944 Score: 211
Period size: 51 Copynumber: 3.7 Consensus size: 51
34089748 ATCGATGAAC
* * * *
34089758 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTC
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGGACCGATAAATATTGGTA
* * * * *
34089809 ACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCT-TTGGTT
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGGACCGATAAA--TATTGGTA
* *
34089860 ACGTGTGTAGTACTATGTGGAGGCTACTACGTGGACCG-TAAA-ACTTGATA
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGGACCGATAAATA-TTGGTA
*
34089910 ACGTGTGTAGTACTATGTGAAGGCTATTACGTGGA
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGGA
34089945 TCGAATGATA
Statistics
Matches: 116, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
50 40 0.34
51 75 0.65
52 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (51 bp):
ACGTGTGTAGTACTATGTGAAGGCTACTACGTGGACCGATAAATATTGGTA
Found at i:34089841 original size:26 final size:26
Alignment explanation
Indices: 34089761--34089843 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
34089751 GATGAACACG
*
34089761 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* *
34089787 CGTGTA-T-CGATAAAT-AATGG-TCAC-A
1 TGTGTAGTAC--TAAGTGAA-GGCT-ACTA
34089812 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
34089838 TGTGTA
1 TGTGTA
34089844 CCGAAAAGCT
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
24 1 0.02
25 18 0.42
26 23 0.53
27 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Found at i:34093764 original size:16 final size:15
Alignment explanation
Indices: 34093740--34093782 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
34093730 CTCAAAACCT
34093740 TACAAAACCTTAAACCC
1 TACAAAACCTTAAA--C
*
34093757 TA-AAAACCATAAAC
1 TACAAAACCTTAAAC
34093771 TACAAAACCTTA
1 TACAAAACCTTA
34093783 CCCCTAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 3 0.13
15 8 0.35
16 10 0.43
17 2 0.09
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (15 bp):
TACAAAACCTTAAAC
Found at i:34109252 original size:20 final size:20
Alignment explanation
Indices: 34109217--34109265 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
34109207 ATCATGGTCT
*
34109217 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
34109236 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
34109256 TTGCTTACTT
1 TTGCTTACTT
34109266 AAATAAATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:34109534 original size:50 final size:49
Alignment explanation
Indices: 34109480--34109604 Score: 153
Period size: 50 Copynumber: 2.5 Consensus size: 49
34109470 TATCCCATAT
* * **
34109480 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTAC-TGGGAGCTCTCATATCGGTGCCAACACCATGTCCCAGAC
*
34109530 ATGGTCTTAC-GGGAGACCTCTCATCTCGGTGCCAACACCATGTCCCAGAC
1 ATGGTCTTACTGGGAG--CTCTCATATCGGTGCCAACACCATGTCCCAGAC
*
34109580 ATGGTCTTACGTGGGACCTCTCATA
1 ATGGTCTTAC-TGGGAGCTCTCATA
34109605 ACCTCAATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
48 5 0.08
50 55 0.86
52 4 0.06
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (49 bp):
ATGGTCTTACTGGGAGCTCTCATATCGGTGCCAACACCATGTCCCAGAC
Found at i:34110950 original size:28 final size:28
Alignment explanation
Indices: 34110910--34110964 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
34110900 ATTTGTGAAC
*
34110910 TATAGCACATACAGACTAACTAATTTAG
1 TATAACACATACAGACTAACTAATTTAG
*
34110938 TATAACACATACAGACTTACTAATTTA
1 TATAACACATACAGACTAACTAATTTA
34110965 ACTAATCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (28 bp):
TATAACACATACAGACTAACTAATTTAG
Found at i:34112448 original size:14 final size:14
Alignment explanation
Indices: 34112417--34112456 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
34112407 CTTGGAAACA
34112417 CCTTT-GAAAAATT
1 CCTTTAGAAAAATT
34112430 CCTTTAGAAAACATT
1 CCTTTAGAAAA-ATT
34112445 -CTTTA-AAAAATT
1 CCTTTAGAAAAATT
34112457 ATGAATTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 3 0.12
13 9 0.36
14 10 0.40
15 3 0.12
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (14 bp):
CCTTTAGAAAAATT
Found at i:34119200 original size:22 final size:19
Alignment explanation
Indices: 34119161--34119209 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
34119151 AATAAAGTTG
34119161 ATAATAATTAATATATATC
1 ATAATAATTAATATATATC
34119180 ATAATGAATATAAT-TATAT-
1 ATAAT-AAT-TAATATATATC
34119199 ATTAATAATTA
1 A-TAATAATTA
34119210 TCATCTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.07
19 9 0.33
20 12 0.44
21 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
ATAATAATTAATATATATC
Found at i:34119205 original size:16 final size:16
Alignment explanation
Indices: 34119164--34119205 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
34119154 AAAGTTGATA
34119164 ATAATTAATATATATC
1 ATAATTAATATATATC
* *
34119180 ATAATGAATATA-ATT
1 ATAATTAATATATATC
34119195 ATATATTAATA
1 ATA-ATTAATA
34119206 ATTATCATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (16 bp):
ATAATTAATATATATC
Found at i:34119233 original size:15 final size:15
Alignment explanation
Indices: 34119213--34119241 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
34119203 ATAATTATCA
34119213 TCTTTTCTTTTTTTT
1 TCTTTTCTTTTTTTT
34119228 TCTTTTCTTTTTTT
1 TCTTTTCTTTTTTT
34119242 ATTGAACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TCTTTTCTTTTTTTT
Found at i:34119336 original size:30 final size:30
Alignment explanation
Indices: 34119279--34119340 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
34119269 ACTTTTTGAA
* *
34119279 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
34119309 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
34119339 AA
1 AA
34119341 AAATAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:34128452 original size:17 final size:17
Alignment explanation
Indices: 34128435--34128467 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
34128425 ATAATATTAT
34128435 TTTAA-TAAATTTAATA
1 TTTAATTAAATTTAATA
*
34128451 TTTAATTTAATTTAATA
1 TTTAATTAAATTTAATA
34128468 CTTATCTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAATTAAATTTAATA
Found at i:34130850 original size:27 final size:29
Alignment explanation
Indices: 34130800--34130869 Score: 110
Period size: 27 Copynumber: 2.5 Consensus size: 29
34130790 ATAAAAAAAA
*
34130800 TTACCAAAATGT-TATACATTTTTTTTAT
1 TTACCAAAATATATATACATTTTTTTTAT
34130828 TTACCAAAATATATATA-A-TTTTTTTAT
1 TTACCAAAATATATATACATTTTTTTTAT
34130855 TTACCAAAATATATA
1 TTACCAAAATATATA
34130870 AAAAAAACCA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 24 0.60
28 12 0.30
29 4 0.10
ACGTcount: A:0.40, C:0.10, G:0.01, T:0.49
Consensus pattern (29 bp):
TTACCAAAATATATATACATTTTTTTTAT
Found at i:34130965 original size:27 final size:27
Alignment explanation
Indices: 34130924--34131002 Score: 117
Period size: 27 Copynumber: 2.9 Consensus size: 27
34130914 TTCCCTGGGT
34130924 CAAGGGAACAC-TGTTGGCGGCACCAAA
1 CAAGGGAAC-CTTGTTGGCGGCACCAAA
34130951 CAAGGGAACCTTGTTGGCGGCACCAAA
1 CAAGGGAACCTTGTTGGCGGCACCAAA
*
34130978 CAA-GGATTCCTTGTTGGCGGCACCA
1 CAAGGGA-ACCTTGTTGGCGGCACCA
34131003 CCTTAAATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 4 0.08
27 45 0.92
ACGTcount: A:0.28, C:0.27, G:0.29, T:0.16
Consensus pattern (27 bp):
CAAGGGAACCTTGTTGGCGGCACCAAA
Found at i:34131072 original size:18 final size:17
Alignment explanation
Indices: 34131049--34131164 Score: 76
Period size: 18 Copynumber: 6.5 Consensus size: 17
34131039 GAAGGAGAGG
34131049 GGAAG-AAGAAGAAAGAAA
1 GGAAGAAAGAA-AAAG-AA
34131067 GGAAGAAAGAAAAAGAA
1 GGAAGAAAGAAAAAGAA
* *
34131084 GG-A-AAAGGAAAGGAGA
1 GGAAGAAAGAAAAAGA-A
34131100 GGAAAGAAAGAAAAAGAA
1 GG-AAGAAAGAAAAAGAA
** *
34131118 GGAAAGAAAAGGAAAGGGGA
1 GG-AAG-AAA-GAAAAAGAA
*
34131138 GGAAAGAAAGAAAAATAA
1 GG-AAGAAAGAAAAAGAA
34131156 GGAAAGAAA
1 GG-AAGAAA
34131165 AGGAAAGGAG
Statistics
Matches: 80, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
15 9 0.11
16 4 0.05
17 4 0.05
18 31 0.39
19 20 0.25
20 12 0.15
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.01
Consensus pattern (17 bp):
GGAAGAAAGAAAAAGAA
Found at i:34131082 original size:10 final size:10
Alignment explanation
Indices: 34131051--34131122 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 10
34131041 AGGAGAGGGG
*
34131051 AAGAAGAAGA
1 AAGAAAAAGA
34131061 AAGAAAGGAAGA
1 AAGAAA--AAGA
34131073 AAGAAAAAGA
1 AAGAAAAAGA
* *
34131083 AGGAAAAGGA
1 AAGAAAAAGA
34131093 AAGGAGAGGAAAGA
1 AA-GA-A--AAAGA
34131107 AAGAAAAAGA
1 AAGAAAAAGA
*
34131117 AGGAAA
1 AAGAAA
34131123 GAAAAGGAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
10 28 0.56
11 2 0.04
12 12 0.24
13 2 0.04
14 6 0.12
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:34131082 original size:22 final size:23
Alignment explanation
Indices: 34131051--34131152 Score: 73
Period size: 24 Copynumber: 4.3 Consensus size: 23
34131041 AGGAGAGGGG
*
34131051 AAGAAGAAGAAAG-AAAGGAAGA
1 AAGAAAAAGAAAGAAAAGGAAGA
*
34131073 AAGAAAAAGAAGGAAAAGGAA-A
1 AAGAAAAAGAAAGAAAAGGAAGA
* * *
34131095 GGAGAGGAAAGAAAGAAAAAGAAGGA
1 -AAGA-AAAAGAAAGAAAAGGAA-GA
* ***
34131121 AAGAAAAGGAAAGGGGAGGAAAGA
1 AAGAAAAAGAAAGAAAAGG-AAGA
34131145 AAGAAAAA
1 AAGAAAAA
34131153 TAAGGAAAGA
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
22 12 0.20
23 10 0.17
24 32 0.53
25 5 0.08
26 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (23 bp):
AAGAAAAAGAAAGAAAAGGAAGA
Found at i:34131088 original size:14 final size:13
Alignment explanation
Indices: 34131054--34131127 Score: 51
Period size: 14 Copynumber: 5.1 Consensus size: 13
34131044 AGAGGGGAAG
34131054 AAGAAGAAAG-AA
1 AAGAAGAAAGAAA
*
34131066 AGGAAGAAAGAAA
1 AAGAAGAAAGAAA
34131079 AAGAAGGAAAAGGAAA
1 AAGAA-G-AAA-GAAA
34131095 GGAGAGGAAAGAAAGAAA
1 --A-A-G-AAGAAAGAAA
34131113 AAGAAGGAAAGAAA
1 AAGAA-GAAAGAAA
34131127 A
1 A
34131128 GGAAAGGGGA
Statistics
Matches: 50, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
12 9 0.18
13 8 0.16
14 11 0.22
15 4 0.08
16 5 0.10
18 5 0.10
19 4 0.08
20 2 0.04
21 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAGAAA
Found at i:34131109 original size:28 final size:28
Alignment explanation
Indices: 34131054--34131133 Score: 85
Period size: 34 Copynumber: 2.8 Consensus size: 28
34131044 AGAGGGGAAG
34131054 AAGAA-GAAAG-AAAGG-AAGAAAGAAA
1 AAGAAGGAAAGAAAAGGAAAGAAAGAAA
34131079 AAGAAGGAAAAGGAAAGGAGAGGAAAGAAAGAAA
1 AAGAAGG-AAA-G-AA--A-AGGAAAGAAAGAAA
34131113 AAGAAGGAAAGAAAAGGAAAG
1 AAGAAGGAAAGAAAAGGAAAG
34131134 GGGAGGAAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
25 5 0.11
26 1 0.02
27 3 0.07
28 8 0.17
29 1 0.02
30 1 0.02
31 2 0.04
32 2 0.04
33 6 0.13
34 17 0.37
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (28 bp):
AAGAAGGAAAGAAAAGGAAAGAAAGAAA
Found at i:34131127 original size:38 final size:38
Alignment explanation
Indices: 34131069--34131228 Score: 176
Period size: 38 Copynumber: 4.4 Consensus size: 38
34131059 GAAAGAAAGG
34131069 AAGAAAGAAAAAGAA-G---GAAAAGGAAAGGAGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
*
34131103 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGGGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
* *
34131141 AAGAAAGAAAAATAAGGAAAGAAAAGGAAAGGAGAAGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
* * * *
34131179 GAA-AAA-AAAAAGAAAGAGAGAAGAGGGAAGGA-AGG-
1 -AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
34131214 AAGTAAA-AAAAAGAA
1 AAG-AAAGAAAAAGAA
34131229 AATAAGGTAA
Statistics
Matches: 109, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
34 17 0.16
35 1 0.01
36 13 0.12
37 21 0.19
38 55 0.50
39 2 0.02
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (38 bp):
AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
Found at i:34131129 original size:10 final size:10
Alignment explanation
Indices: 34131071--34131171 Score: 79
Period size: 10 Copynumber: 10.5 Consensus size: 10
34131061 AAGAAAGGAA
*
34131071 GAAAGAAAAA
1 GAAAGAAAAG
*
34131081 GAAGGAAAAG
1 GAAAGAAAAG
* *
34131091 GAAAGGAGAG
1 GAAAGAAAAG
34131101 GAAAG-AAA-
1 GAAAGAAAAG
34131109 GAAA-AAGAAG
1 GAAAGAA-AAG
34131119 GAAAGAAAAG
1 GAAAGAAAAG
***
34131129 GAAAGGGGAG
1 GAAAGAAAAG
34131139 GAAAG-AAA-
1 GAAAGAAAAG
34131147 GAAA-AATAAG
1 GAAAGAA-AAG
34131157 GAAAGAAAAG
1 GAAAGAAAAG
34131167 GAAAG
1 GAAAG
34131172 GAGAAGAGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
8 10 0.14
9 7 0.10
10 51 0.71
11 4 0.06
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (10 bp):
GAAAGAAAAG
Found at i:34131944 original size:19 final size:19
Alignment explanation
Indices: 34131911--34131962 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
34131901 AAAATATATA
**
34131911 TAATATTTTGGTATTTTT-
1 TAATATTTTATTATTTTTG
34131929 TAAATATTTTATTATTTTTG
1 T-AATATTTTATTATTTTTG
*
34131949 TAATGTTTTATTAT
1 TAATATTTTATTAT
34131963 GGGTTTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 1 0.03
19 27 0.93
20 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (19 bp):
TAATATTTTATTATTTTTG
Found at i:34136072 original size:62 final size:62
Alignment explanation
Indices: 34135956--34136074 Score: 163
Period size: 62 Copynumber: 1.9 Consensus size: 62
34135946 CCACTAATCC
* *
34135956 TAATAACTAACACAATAATAATATTAATAATTTTATATACAAAATAATACTAACTAAAATTAT
1 TAATAACTAACACAAAAATAATACTAAT-ATTTTATATACAAAATAATACTAACTAAAATTAT
34136019 TAATAACTAACTACAAAAATAATACTAAT-TTTT-T-TACTAACAATAATACTAACTAA
1 TAATAACTAAC-ACAAAAATAATACTAATATTTTATATAC-AA-AATAATACTAACTAA
34136075 CATCTTAATA
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
60 3 0.06
61 3 0.06
62 19 0.37
63 11 0.22
64 15 0.29
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (62 bp):
TAATAACTAACACAAAAATAATACTAATATTTTATATACAAAATAATACTAACTAAAATTAT
Found at i:34136087 original size:64 final size:62
Alignment explanation
Indices: 34135956--34136088 Score: 155
Period size: 64 Copynumber: 2.1 Consensus size: 62
34135946 CCACTAATCC
* * *
34135956 TAATAACTAACACAATAATAATATTAATAATTTTATATACAAAATAATACTAACTAAAATTAT
1 TAATAACTAACACAAAAATAATACTAAT-ATTTTATATACAAAATAATACTAACTAAAATTAA
*
34136019 TAATAACTAACTACAAAAATAATACTAAT-TTTT-T-TACTAACAATAATACTAACTAACATCTT
1 TAATAACTAAC-ACAAAAATAATACTAATATTTTATATAC-AA-AATAATACTAACTAA-A-ATT
34136081 AA
61 AA
34136083 TAATAA
1 TAATAA
34136089 TAATAATAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
60 3 0.05
61 3 0.05
62 19 0.31
63 12 0.20
64 24 0.39
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (62 bp):
TAATAACTAACACAAAAATAATACTAATATTTTATATACAAAATAATACTAACTAAAATTAA
Found at i:34136088 original size:3 final size:3
Alignment explanation
Indices: 34136080--34136129 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
34136070 ACTAACATCT
34136080 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
34136128 TA
1 TA
34136130 CTATAAAATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:34136460 original size:27 final size:27
Alignment explanation
Indices: 34136422--34136527 Score: 160
Period size: 27 Copynumber: 3.9 Consensus size: 27
34136412 ATAACACGAG
* **
34136422 TGGTGCCGCCAACAGGGAACCCTTGTT
1 TGGTGCCGCCAACAAGGTTCCCTTGTT
*
34136449 TGGTGCCACCAACAAGGTTCCCTTGTT
1 TGGTGCCGCCAACAAGGTTCCCTTGTT
34136476 TGGTGCCGCCAACAAGGTTCCCTTGTT
1 TGGTGCCGCCAACAAGGTTCCCTTGTT
34136503 TGGTGCCGCCAAC-AGTGTTCCCTTG
1 TGGTGCCGCCAACAAG-GTTCCCTTG
34136528 ACTCAGGGAA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
26 2 0.03
27 71 0.97
ACGTcount: A:0.16, C:0.30, G:0.26, T:0.27
Consensus pattern (27 bp):
TGGTGCCGCCAACAAGGTTCCCTTGTT
Found at i:34136569 original size:10 final size:10
Alignment explanation
Indices: 34136554--34136582 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
34136544 AATCGGTCCA
34136554 GTTTTTTTTT
1 GTTTTTTTTT
34136564 G-TTTTTTTT
1 GTTTTTTTTT
34136573 GTTTTTTTTT
1 GTTTTTTTTT
34136583 TTGATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (10 bp):
GTTTTTTTTT
Found at i:34136570 original size:9 final size:9
Alignment explanation
Indices: 34136556--34136581 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
34136546 TCGGTCCAGT
34136556 TTTTTTTTG
1 TTTTTTTTG
34136565 TTTTTTTTG
1 TTTTTTTTG
34136574 TTTTTTTT
1 TTTTTTTT
34136582 TTTGATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:34136619 original size:27 final size:28
Alignment explanation
Indices: 34136586--34136653 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 28
34136576 TTTTTTTTTG
34136586 ATATATTTTGGTAAATAAAAAAAT-TAT
1 ATATATTTTGGTAAATAAAAAAATGTAT
* *
34136613 ATATATTTTAGTAAGTAAAAAAATGTAT
1 ATATATTTTGGTAAATAAAAAAATGTAT
*
34136641 A-ACATTTTGGTAA
1 ATATATTTTGGTAA
34136654 TTTTTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 32 0.89
28 4 0.11
ACGTcount: A:0.49, C:0.01, G:0.10, T:0.40
Consensus pattern (28 bp):
ATATATTTTGGTAAATAAAAAAATGTAT
Found at i:34137765 original size:33 final size:33
Alignment explanation
Indices: 34137728--34137790 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
34137718 TTTATATTAG
34137728 AAAATAT-AT-TTAAAATATAAAATGTTGAAAAAA
1 AAAATATAATATTAAAATAT-AAA-GTTGAAAAAA
* *
34137761 AAAATTTAATATTAAACTATAAAGTTGAAA
1 AAAATATAATATTAAAATATAAAGTTGAAA
34137791 TTAACGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
33 13 0.50
34 5 0.19
35 8 0.31
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (33 bp):
AAAATATAATATTAAAATATAAAGTTGAAAAAA
Found at i:34153849 original size:18 final size:17
Alignment explanation
Indices: 34153810--34153860 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
34153800 AAAATTATAA
34153810 AAAATCATAAAAAAAT-T
1 AAAAT-ATAAAAAAATAT
34153827 AAAATATAAAAAAATAT
1 AAAATATAAAAAAATAT
34153844 AGAAAT-TAAAAAGAATA
1 A-AAATATAAAAA-AATA
34153861 AAAGAGAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 10 0.32
17 13 0.42
18 8 0.26
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.22
Consensus pattern (17 bp):
AAAATATAAAAAAATAT
Found at i:34153950 original size:17 final size:16
Alignment explanation
Indices: 34153927--34153972 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
34153917 GTGTAATATC
34153927 ATATATGAATTTTGAT
1 ATATATGAATTTTGAT
34153943 ATTATATG-ATTTT-AT
1 A-TATATGAATTTTGAT
*
34153958 ATATA-AAATTTTGAT
1 ATATATGAATTTTGAT
34153973 TTGAATCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
14 9 0.35
15 5 0.19
16 6 0.23
17 6 0.23
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (16 bp):
ATATATGAATTTTGAT
Found at i:34156978 original size:24 final size:24
Alignment explanation
Indices: 34156946--34157004 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
34156936 CTACACGAAT
**
34156946 CAGAGTTTAAGTGGGAAACTAAAA
1 CAGAGTTTAACCGGGAAACTAAAA
34156970 CAGAGTTTAACCGGGAAACTAAAA
1 CAGAGTTTAACCGGGAAACTAAAA
34156994 CAGAGTTTAAC
1 CAGAGTTTAAC
34157005 TGAGAGAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (24 bp):
CAGAGTTTAACCGGGAAACTAAAA
Found at i:34157040 original size:29 final size:29
Alignment explanation
Indices: 34157007--34157065 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
34156997 AGTTTAACTG
34157007 AGAGAAGAAAGTTGAAAAAATTGCATAAT
1 AGAGAAGAAAGTTGAAAAAATTGCATAAT
34157036 AGAGAAGAAAGTTGAAAAAATTGCATAAT
1 AGAGAAGAAAGTTGAAAAAATTGCATAAT
34157065 A
1 A
34157066 CATCGCCTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.56, C:0.03, G:0.20, T:0.20
Consensus pattern (29 bp):
AGAGAAGAAAGTTGAAAAAATTGCATAAT
Found at i:34159331 original size:19 final size:20
Alignment explanation
Indices: 34159307--34159344 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
34159297 ACATCCAAAA
34159307 TCATCACC-ATGTACCATAT
1 TCATCACCTATGTACCATAT
34159326 TCATCACCTATGTACCATA
1 TCATCACCTATGTACCATA
34159345 CAAGGTGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (20 bp):
TCATCACCTATGTACCATAT
Found at i:34161095 original size:24 final size:25
Alignment explanation
Indices: 34161054--34161101 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
34161044 TTAAGTTGAT
*
34161054 AAGAATTCTTTTTGAGTTT-TTTTC
1 AAGAATTCTTTTTAAGTTTCTTTTC
34161078 AAGAATTAC-TTTTAAGTTTCTTTT
1 AAGAATT-CTTTTTAAGTTTCTTTT
34161102 AGAGTTGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.25, C:0.08, G:0.10, T:0.56
Consensus pattern (25 bp):
AAGAATTCTTTTTAAGTTTCTTTTC
Found at i:34163052 original size:95 final size:97
Alignment explanation
Indices: 34162889--34163077 Score: 310
Period size: 95 Copynumber: 2.0 Consensus size: 97
34162879 GAGGAATACA
* * *
34162889 ATTGAGCTATCACATTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAGGGTTTCCAATG
1 ATTGAGCTATCACATTTTATGAAATGTTATTAGTGTAGTTCAAAAGATCATAAGGGTTTCCAATG
34162954 TCCAATTAAA-ATCCAAATAGAG-AGAAAACG
66 TCCAATTAAATATCCAAATAGAGAAGAAAACG
* *
34162984 ATTGAGCTATCACCTTTTATGAAATGTTATTAGTGTAGTTCACAAGATCATAAGGGTTTCCAATG
1 ATTGAGCTATCACATTTTATGAAATGTTATTAGTGTAGTTCAAAAGATCATAAGGGTTTCCAATG
*
34163049 TCCAATTAAATATCCAACTAGAGAAGAAA
66 TCCAATTAAATATCCAAATAGAGAAGAAA
34163078 GCAAGTATGA
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
95 70 0.81
96 11 0.13
97 5 0.06
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (97 bp):
ATTGAGCTATCACATTTTATGAAATGTTATTAGTGTAGTTCAAAAGATCATAAGGGTTTCCAATG
TCCAATTAAATATCCAAATAGAGAAGAAAACG
Found at i:34167241 original size:8 final size:8
Alignment explanation
Indices: 34167228--34167255 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
34167218 TATCACCATT
34167228 TATAAGAA
1 TATAAGAA
34167236 TATAAGAA
1 TATAAGAA
34167244 TATAAGAA
1 TATAAGAA
34167252 TATA
1 TATA
34167256 TATATGTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (8 bp):
TATAAGAA
Found at i:34167670 original size:43 final size:43
Alignment explanation
Indices: 34167590--34167671 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
34167580 AAATATTAGG
*
34167590 GCACACATAGTGCACCATCAGATAAGCTGTAGAAATTATACTT
1 GCACACATAGTGCACCATCAGATAAGCTGAAGAAATTATACTT
* * *
34167633 GCACACATAGTGCATCATCGGATTAA-CTGAAGTAATTAT
1 GCACACATAGTGCACCATCAGA-TAAGCTGAAGAAATTAT
34167672 GTTGGCACGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 31 0.91
44 3 0.09
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (43 bp):
GCACACATAGTGCACCATCAGATAAGCTGAAGAAATTATACTT
Found at i:34167761 original size:42 final size:41
Alignment explanation
Indices: 34167641--34167777 Score: 123
Period size: 42 Copynumber: 3.2 Consensus size: 41
34167631 TTGCACACAT
* *
34167641 AGTGCATCATCGGATTAACTGAAGTAATTATGT-TGGCACGTA
1 AGTGCATCATCGGATT-ACCGAAGAAATTAT-TCTGGCACGTA
* * ** * *
34167683 AGTGCATCATTGGACGTACCGAAGAAAAAATACTGGCATGTA
1 AGTGCATCATCGGA-TTACCGAAGAAATTATTCTGGCACGTA
* **
34167725 AGTGCATCATCAGATATACCGAAGAAATTATTCTGGCACACA
1 AGTGCATCATCGGAT-TACCGAAGAAATTATTCTGGCACGTA
34167767 CAGTGCATCAT
1 -AGTGCATCAT
34167778 TTATTAAACC
Statistics
Matches: 74, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
42 63 0.85
43 11 0.15
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (41 bp):
AGTGCATCATCGGATTACCGAAGAAATTATTCTGGCACGTA
Found at i:34169040 original size:20 final size:21
Alignment explanation
Indices: 34169017--34169056 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
34169007 AGTTTTATTT
34169017 AATTAAATAA-AGGTTAATTA
1 AATTAAATAACAGGTTAATTA
* *
34169037 AATTAATTAACATGTTAATT
1 AATTAAATAACAGGTTAATT
34169057 TAGCTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (21 bp):
AATTAAATAACAGGTTAATTA
Done.