Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 114 of 187
Found at i:34169351 original size:24 final size:24
Alignment explanation
Indices: 34169324--34169376 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
34169314 AGGATTAGTC
*
34169324 ATGAGGTAATTATATAATGCTTGT
1 ATGAGGTAAGTATATAATGCTTGT
34169348 ATGAGGTAAGTATATAATGCTTGT
1 ATGAGGTAAGTATATAATGCTTGT
*
34169372 TTGAG
1 ATGAG
34169377 TTATGATGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.40
Consensus pattern (24 bp):
ATGAGGTAAGTATATAATGCTTGT
Found at i:34171200 original size:22 final size:23
Alignment explanation
Indices: 34171175--34171218 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
34171165 AGTCCAAATA
*
34171175 ATTAACATCTTTAA-CTATTTTG
1 ATTAAAATCTTTAATCTATTTTG
*
34171197 ATTAAAATTTTTAATCTATTTT
1 ATTAAAATCTTTAATCTATTTT
34171219 TTATAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (23 bp):
ATTAAAATCTTTAATCTATTTTG
Found at i:34183100 original size:13 final size:13
Alignment explanation
Indices: 34183045--34183091 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
34183035 AAAAATGGTA
*
34183045 ATATGAAATGTTT
1 ATATGAAATGATT
34183058 ATATGGAAATAGA-T
1 ATAT-GAAAT-GATT
34183072 ATATGAAATGATT
1 ATATGAAATGATT
34183085 ATATGAA
1 ATATGAA
34183092 GTGTTTATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 2 0.07
13 17 0.57
14 10 0.33
15 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (13 bp):
ATATGAAATGATT
Found at i:34186255 original size:41 final size:42
Alignment explanation
Indices: 34186153--34186288 Score: 136
Period size: 41 Copynumber: 3.2 Consensus size: 42
34186143 TATGTTATCG
* * *
34186153 TGTAAGACCATGTCTAGGACGTTGGCATCGACTTGTGTTGCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGACTTGTGTTGCA
*
34186195 TGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGTTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCG-ACTTGTGTTGCA
* * *
34186236 TGTAAGACCTTGT-TGGGGACAGTGGCATCGA-TATGTGATTACA
1 TGTAAGACCATGTCT-GGGACATTGGCATCGACT-TGTG-TTGCA
*
34186279 TGAAAGACCA
1 TGTAAGACCA
34186289 CATTCGGGAC
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
40 3 0.04
41 32 0.40
42 32 0.40
43 13 0.16
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGACTTGTGTTGCA
Found at i:34190580 original size:5 final size:5
Alignment explanation
Indices: 34190570--34190594 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
34190560 GCATTGAAAC
34190570 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
34190595 CTTAGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:34192563 original size:21 final size:19
Alignment explanation
Indices: 34192525--34192569 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
34192515 ACATTTGTCA
34192525 TCTTTTTCTTTCTTTTGTT
1 TCTTTTTCTTTCTTTTGTT
*
34192544 TCTTTTTCCATTTTTTTTGTT
1 TCTTTTT-C-TTTCTTTTGTT
34192565 TCTTT
1 TCTTT
34192570 CTTTTCACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
20 1 0.04
21 15 0.65
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (19 bp):
TCTTTTTCTTTCTTTTGTT
Found at i:34193181 original size:26 final size:26
Alignment explanation
Indices: 34193099--34193185 Score: 111
Period size: 26 Copynumber: 3.3 Consensus size: 26
34193089 ACACGGGCTT
* *
34193099 GTGTAGGCTGTGTGGCCCACACGAGC
1 GTGTAGGCCGTGTGGGCCACACGAGC
* *
34193125 GTGTAAGCCGTATGGGCCACACGAGC
1 GTGTAGGCCGTGTGGGCCACACGAGC
* *
34193151 GTGTGGGCCGTGTGGGCCACACGAGT
1 GTGTAGGCCGTGTGGGCCACACGAGC
*
34193177 GTGTGGGCC
1 GTGTAGGCC
34193186 CATTTTCTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.15, C:0.25, G:0.41, T:0.18
Consensus pattern (26 bp):
GTGTAGGCCGTGTGGGCCACACGAGC
Found at i:34203949 original size:31 final size:31
Alignment explanation
Indices: 34203911--34203973 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
34203901 CATATAAAAG
34203911 TAAGAATGAAATAGAAATTTTCTAAGTTTAT
1 TAAGAATGAAATAGAAATTTTCTAAGTTTAT
34203942 TAAGAATGAAATAGAAATTTTCTAAGTTTAT
1 TAAGAATGAAATAGAAATTTTCTAAGTTTAT
34203973 T
1 T
34203974 TCCAAAGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.40
Consensus pattern (31 bp):
TAAGAATGAAATAGAAATTTTCTAAGTTTAT
Found at i:34205288 original size:33 final size:33
Alignment explanation
Indices: 34205251--34205323 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
34205241 TCGGGACATA
*
34205251 AAACATGAAACAAACAAAGTCCGCCAGGATAGT
1 AAACATGAAACAAACAAAGTCCGCCAGGATAAT
* * * * *
34205284 AAACATGGAATAGACTAAGTCTGCCAGGATAAT
1 AAACATGAAACAAACAAAGTCCGCCAGGATAAT
34205317 AAACATG
1 AAACATG
34205324 GGTTAGTCCG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.16
Consensus pattern (33 bp):
AAACATGAAACAAACAAAGTCCGCCAGGATAAT
Found at i:34205339 original size:27 final size:27
Alignment explanation
Indices: 34205301--34205353 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
34205291 GAATAGACTA
* * *
34205301 AGTCTGCCAGGATAATAAACATGGGTT
1 AGTCCGCCAGGACAATAAACACGGGTT
*
34205328 AGTCCGCCAGGACAGTAAACACGGGT
1 AGTCCGCCAGGACAATAAACACGGGT
34205354 AAGTTCGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.19
Consensus pattern (27 bp):
AGTCCGCCAGGACAATAAACACGGGTT
Found at i:34214069 original size:16 final size:16
Alignment explanation
Indices: 34214048--34214080 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34214038 TCAAAATAAT
34214048 ATATAAAAATTCAAAA
1 ATATAAAAATTCAAAA
*
34214064 ATATAAAAATTGAAAA
1 ATATAAAAATTCAAAA
34214080 A
1 A
34214081 AAATAGTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (16 bp):
ATATAAAAATTCAAAA
Found at i:34225877 original size:41 final size:41
Alignment explanation
Indices: 34225815--34225961 Score: 249
Period size: 41 Copynumber: 3.6 Consensus size: 41
34225805 CATTGAATGT
34225815 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
*
34225856 AAGGTGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
** * *
34225897 AAGGGGTTGCTAAGTATAGATTCCCCGAAACTCTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
34225938 AAGGGGTTGCTAAGTGCAGATTCC
1 AAGGGGTTGCTAAGTGCAGATTCC
34225962 TCGAGGGGTT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 98 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
Found at i:34239672 original size:14 final size:16
Alignment explanation
Indices: 34239662--34239724 Score: 69
Period size: 15 Copynumber: 3.9 Consensus size: 16
34239652 TTAATATAAT
34239662 TATTTTTATATTAAAA
1 TATTTTTATATTAAAA
34239678 TATTTTTAT-TTAAAA
1 TATTTTTATATTAAAA
*
34239693 TTATATTTTGAAATT-AAA
1 -TAT-TTTT-ATATTAAAA
34239711 TA-TTTTATATTAAA
1 TATTTTTATATTAAA
34239725 TTATATTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
14 4 0.10
15 12 0.30
16 12 0.30
17 6 0.15
18 4 0.10
19 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
TATTTTTATATTAAAA
Found at i:34239717 original size:32 final size:33
Alignment explanation
Indices: 34239646--34239731 Score: 94
Period size: 32 Copynumber: 2.7 Consensus size: 33
34239636 TAATTTAATT
*
34239646 ATATTTTTA-A-TATAATTAT-TTTTATATTAAA
1 ATATTTTTATATTA-AATTATATTTTAAATTAAA
34239677 ATATTTTTAT-TTAAAATTATATTTTGAAATT-AA
1 ATATTTTTATATT-AAATTATATTTT-AAATTAAA
34239710 ATA-TTTTATATTAAATTATATT
1 ATATTTTTATATTAAATTATATT
34239732 AAAATATTTC
Statistics
Matches: 48, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
31 9 0.19
32 23 0.48
33 12 0.25
34 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (33 bp):
ATATTTTTATATTAAATTATATTTTAAATTAAA
Found at i:34241775 original size:34 final size:34
Alignment explanation
Indices: 34241715--34241836 Score: 158
Period size: 34 Copynumber: 3.6 Consensus size: 34
34241705 ATCCAATGCT
34241715 CAAATCAATTCGGCAATATATATATGTATACATATA
1 CAAATCAATTCGGC-A-ATATATATGTATACATATA
*
34241751 CAAATCAATTCGTCAATATATATGTATACATATA
1 CAAATCAATTCGGCAATATATATGTATACATATA
* * * *
34241785 CAAATCAATTCGACAATGTATA--TATATATATT
1 CAAATCAATTCGGCAATATATATGTATACATATA
*
34241817 TAAATCAATTCGGCAATATA
1 CAAATCAATTCGGCAATATA
34241837 AAAAACATAT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
32 25 0.32
34 39 0.50
35 1 0.01
36 13 0.17
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.34
Consensus pattern (34 bp):
CAAATCAATTCGGCAATATATATGTATACATATA
Found at i:34241827 original size:32 final size:32
Alignment explanation
Indices: 34241715--34241836 Score: 136
Period size: 32 Copynumber: 3.6 Consensus size: 32
34241705 ATCCAATGCT
34241715 CAAATCAATTCGGCAATATATATATGTATACATATA
1 CAAATCAATTCGGCAATATATATA--TAT--ATATA
* *
34241751 CAAATCAATTCGTCAATATATATGTATACATATA
1 CAAATCAATTCGGCAATATATA--TATATATATA
* * *
34241785 CAAATCAATTCGACAATGTATATATATATATT
1 CAAATCAATTCGGCAATATATATATATATATA
*
34241817 TAAATCAATTCGGCAATATA
1 CAAATCAATTCGGCAATATA
34241837 AAAAACATAT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
32 25 0.33
34 25 0.33
36 23 0.31
38 2 0.03
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.34
Consensus pattern (32 bp):
CAAATCAATTCGGCAATATATATATATATATA
Found at i:34248536 original size:34 final size:36
Alignment explanation
Indices: 34248476--34248599 Score: 143
Period size: 34 Copynumber: 3.6 Consensus size: 36
34248466 ATCCAATGCT
*
34248476 CAAATCAATTCGGCAATATATATATGTATACATGTA
1 CAAATCAATTCGGCAATATATATATGTATACATATA
*
34248512 CAAATCAATTCGTC-A-ATATATATGTATACATATA
1 CAAATCAATTCGGCAATATATATATGTATACATATA
* * *
34248546 CAAATCAATTTGGCAATGTATATATCTAT--AT-T-
1 CAAATCAATTCGGCAATATATATATGTATACATATA
* *
34248578 TAAATCAATTCGGTAATATATA
1 CAAATCAATTCGGCAATATATA
34248600 AAACATATAC
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
32 18 0.24
33 1 0.01
34 32 0.42
35 2 0.03
36 23 0.30
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (36 bp):
CAAATCAATTCGGCAATATATATATGTATACATATA
Found at i:34250944 original size:41 final size:41
Alignment explanation
Indices: 34250898--34251134 Score: 267
Period size: 41 Copynumber: 5.8 Consensus size: 41
34250888 ACAACACATT
* * *
34250898 GGCACGAAGACTGCTAGGCTCAAAGCCTGATATAACACACC
1 GGCACGAAGCCTGCTAGGCACAAAGCCTGATATAATACACC
* * * *
34250939 AGCACGAAGCATGCTAAGCACAAAGCCTAATATAATACACC
1 GGCACGAAGCCTGCTAGGCACAAAGCCTGATATAATACACC
* * **
34250980 GACACAAAGCCTGCTAGGCACAAAGTTTGATATAATACACC
1 GGCACGAAGCCTGCTAGGCACAAAGCCTGATATAATACACC
* * * *
34251021 GGAACGAAGCCTACTAGGCACAAAGCCTCATATAATACACT
1 GGCACGAAGCCTGCTAGGCACAAAGCCTGATATAATACACC
* * * * * * *
34251062 GGCATGAAGCTTACTAGGCATAAAACTTGATATAATACAAC
1 GGCACGAAGCCTGCTAGGCACAAAGCCTGATATAATACACC
*
34251103 GGCAGGAAGCCTGCTAGGCACAAAGCCTGATA
1 GGCACGAAGCCTGCTAGGCACAAAGCCTGATA
34251135 GATTATCTCA
Statistics
Matches: 158, Mismatches: 38, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 158 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.17
Consensus pattern (41 bp):
GGCACGAAGCCTGCTAGGCACAAAGCCTGATATAATACACC
Found at i:34254815 original size:21 final size:22
Alignment explanation
Indices: 34254769--34254815 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
34254759 AAAATAGGAC
34254769 CACACGACCATATGAATGAGTG
1 CACACGACCATATGAATGAGTG
* * *
34254791 -ACACGCCCGTATGACTGAG-G
1 CACACGACCATATGAATGAGTG
34254811 CACAC
1 CACAC
34254816 ACCCATGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.32, C:0.30, G:0.23, T:0.15
Consensus pattern (22 bp):
CACACGACCATATGAATGAGTG
Found at i:34256368 original size:13 final size:12
Alignment explanation
Indices: 34256339--34256373 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
34256329 ATCTAAGGTC
34256339 TTTTCTTATTAT
1 TTTTCTTATTAT
*
34256351 TTTTCTTATATGT
1 TTTTCTTAT-TAT
34256364 TTTTCTTATT
1 TTTTCTTATT
34256374 TACTTCTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTCTTATTAT
Found at i:34265607 original size:23 final size:23
Alignment explanation
Indices: 34265581--34265648 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
34265571 AAACCATAGT
34265581 TGAAAGATGTTATGCCATCATGA
1 TGAAAGATGTTATGCCATCATGA
* * *
34265604 TGAAA-ATGACTAAGACCAT-A-GT
1 TGAAAGATG-TTATG-CCATCATGA
*
34265626 TGAAAGATGTTATTCCATCATGA
1 TGAAAGATGTTATGCCATCATGA
34265649 CAAAAATGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 10
0.66 0.14 0.20
Matches are distributed among these distances:
21 4 0.12
22 12 0.36
23 13 0.39
24 4 0.12
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.29
Consensus pattern (23 bp):
TGAAAGATGTTATGCCATCATGA
Found at i:34265622 original size:45 final size:44
Alignment explanation
Indices: 34265562--34265721 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 44
34265552 CTATACGCCT
* *
34265562 AAATGAGTAAAACCATAGTTGAAAGATGTTATGCCATCATGATGA
1 AAATGACTAAGACCATAGTTGAAAGATGTTATGCCATCATGA-GA
* *
34265607 AAATGACTAAGACCATAGTTGAAAGATGTTATTCCATCATGACAA
1 AAATGACTAAGACCATAGTTGAAAGATGTTATGCCATCATGA-GA
* * * * * *
34265652 AAATGAGTAAGACCATAGCTGAAAGACGTCATGGCATCA-CAGTA
1 AAATGACTAAGACCATAGTTGAAAGATGTTATGCCATCATGAG-A
* *
34265696 AACAAGACTAAGGCCATAGTTGAAAG
1 AA-ATGACTAAGACCATAGTTGAAAG
34265722 TCGCTATGGA
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 4 0.04
45 92 0.96
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (44 bp):
AAATGACTAAGACCATAGTTGAAAGATGTTATGCCATCATGAGA
Found at i:34268909 original size:39 final size:39
Alignment explanation
Indices: 34268855--34268933 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
34268845 AACTAAGTTC
34268855 ATATGAACTTGCAAGGGTTGTTTTGTGATCGCAGGATAT
1 ATATGAACTTGCAAGGGTTGTTTTGTGATCGCAGGATAT
*
34268894 ATATGAACTTGCAAGGGTTGTTTTGTGATCGTAGGATAT
1 ATATGAACTTGCAAGGGTTGTTTTGTGATCGCAGGATAT
34268933 A
1 A
34268934 CGAGATAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.09, G:0.28, T:0.37
Consensus pattern (39 bp):
ATATGAACTTGCAAGGGTTGTTTTGTGATCGCAGGATAT
Found at i:34271216 original size:12 final size:12
Alignment explanation
Indices: 34271196--34271228 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
34271186 CACGAACAAG
34271196 CTCGTTTATTGA
1 CTCGTTTATTGA
*
34271208 CTCGCTTA-TGA
1 CTCGTTTATTGA
34271219 CTCGTTTATT
1 CTCGTTTATT
34271229 TATTAATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.48
Consensus pattern (12 bp):
CTCGTTTATTGA
Found at i:34271547 original size:23 final size:23
Alignment explanation
Indices: 34271503--34271548 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
34271493 TTCATGTTCG
* *
34271503 TGAACATGTTCGATTAAGTTAAA
1 TGAACATGTTCGATGAAATTAAA
34271526 TGAACATGTTCG-TGAACATTAAA
1 TGAACATGTTCGATGAA-ATTAAA
34271549 CAAACGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (23 bp):
TGAACATGTTCGATGAAATTAAA
Found at i:34273700 original size:43 final size:43
Alignment explanation
Indices: 34273641--34274067 Score: 456
Period size: 43 Copynumber: 10.1 Consensus size: 43
34273631 GACAACGCTA
* *
34273641 CTAAAGACCATGACCTTTAGCGGTGCTTTTATCACAAACACCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
* *
34273684 CTAAAGACCATGACCTTTAGCGGTGCTTTTATCACAAACACCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
* *
34273727 CTAAAGACCATGACCTTTAGCGGCGCTTTTAACACAAACACCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
** * ** * **
34273770 CTAAAGGTCGTGGTCTTTAGCGACGCTTTTATCACAAGTGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
* * *
34273813 CTAAAGACCATGACCTTTAGCGGCACTTTTGTCACAAATGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
*
34273856 ----A-A-CATGACCTTTAGCGGCGCTTTTATCACAAATGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
* * * *
34273893 CAAAAGACCATGACCTTTAACGACGCTTTTGTCACAAACGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
** * * *
34273936 CTATTGAACA-AACCTTTAGCGGCGCTTTTATCACAAATGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
* * *
34273978 CAAAAGACCATGACCTTTAGCGACGCTTTTGTCACAAACGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
** * * * ** *
34274021 CTATTGAACA-AACCTTTAGCGGCGCTTCTCGCAAAAACGCCG
1 CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
34274063 CTAAA
1 CTAAA
34274068 AACATAACAT
Statistics
Matches: 321, Mismatches: 56, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
37 33 0.10
38 1 0.00
39 1 0.00
41 1 0.00
42 63 0.20
43 222 0.69
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
CTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCG
Found at i:34273871 original size:37 final size:37
Alignment explanation
Indices: 34273821--34273892 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
34273811 CGCTAAAGAC
*
34273821 CATGACCTTTAGCGGCACTTTTGTCACAAATGCCGAA
1 CATGACCTTTAGCGGCACTTTTATCACAAATGCCGAA
*
34273858 CATGACCTTTAGCGGCGCTTTTATCACAAATGCCG
1 CATGACCTTTAGCGGCACTTTTATCACAAATGCCG
34273893 CAAAAGACCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (37 bp):
CATGACCTTTAGCGGCACTTTTATCACAAATGCCGAA
Found at i:34274467 original size:43 final size:43
Alignment explanation
Indices: 34274401--34274491 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
34274391 CACATTGTAA
* * *
34274401 GGTAATAAAAAATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAAATACAATACATTTACTTAATCAAGGAAATCTT
* *
34274444 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAAATACAATACATTTACTTAATCAAGGAAATCTT
34274487 -GTAAT
1 GGTAAT
34274492 GAACTCAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 5 0.12
43 38 0.88
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (43 bp):
GGTAATAAAAAATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:34278668 original size:8 final size:7
Alignment explanation
Indices: 34278650--34278759 Score: 53
Period size: 7 Copynumber: 15.0 Consensus size: 7
34278640 ACCAATTAAT
34278650 CTAAACC
1 CTAAACC
34278657 CTAAACCC
1 CTAAA-CC
34278665 CT-AACC
1 CTAAACC
* *
34278671 CTAATCTT
1 CTAAAC-C
34278679 CTAAACC
1 CTAAACC
*
34278686 CTAAATC
1 CTAAACC
* **
34278693 ATAAAAT
1 CTAAACC
*
34278700 ATAAACC
1 CTAAACC
*
34278707 TTAAACCC
1 CTAAA-CC
*
34278715 CTAACCC
1 CTAAACC
34278722 CTAAACC
1 CTAAACC
34278729 TGCTTAAACC
1 --C-TAAACC
34278739 CT-AACC
1 CTAAACC
34278745 CTTAAACC
1 C-TAAACC
*
34278753 ATAAACC
1 CTAAACC
34278760 ATGATCCATA
Statistics
Matches: 79, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
6 9 0.11
7 44 0.56
8 19 0.24
9 1 0.01
10 6 0.08
ACGTcount: A:0.41, C:0.36, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:34278745 original size:24 final size:25
Alignment explanation
Indices: 34278706--34278752 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
34278696 AAATATAAAC
34278706 CTTAAACCCCTAACCCCTAAACCTG
1 CTTAAACCCCTAACCCCTAAACCTG
*
34278731 CTTAAA-CCCTAACCCTTAAACC
1 CTTAAACCCCTAACCCCTAAACC
34278753 ATAAACCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.34, C:0.43, G:0.02, T:0.21
Consensus pattern (25 bp):
CTTAAACCCCTAACCCCTAAACCTG
Found at i:34278923 original size:15 final size:15
Alignment explanation
Indices: 34278877--34278923 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
34278867 TCCCAACCCT
34278877 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
34278891 T-AATCCATAATCCT
1 TAAATCCATAATCCC
* *
34278905 TAAATTCATACTCCC
1 TAAATCCATAATCCC
34278920 TAAA
1 TAAA
34278924 ACTTAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.41
15 14 0.52
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:34282366 original size:18 final size:18
Alignment explanation
Indices: 34282319--34282366 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
34282309 GCTATAATAC
* *
34282319 AAATATATATAAATTTATG
1 AAATAAATAT-AATTTATA
*
34282338 AAA-AAAGATAATTTATA
1 AAATAAATATAATTTATA
34282355 AAATAAATATAA
1 AAATAAATATAA
34282367 ACTTGAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 10 0.42
18 11 0.46
19 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (18 bp):
AAATAAATATAATTTATA
Found at i:34286532 original size:8 final size:7
Alignment explanation
Indices: 34286514--34286543 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
34286504 CTACATGGTG
34286514 AAAAGAA
1 AAAAGAA
34286521 AAAAGAAA
1 AAAAG-AA
34286529 AAAAGAA
1 AAAAGAA
34286536 AAAAGAA
1 AAAAGAA
34286543 A
1 A
34286544 GAGTGTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:34286534 original size:15 final size:15
Alignment explanation
Indices: 34286514--34286543 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
34286504 CTACATGGTG
34286514 AAAAGAAAAAAGAAA
1 AAAAGAAAAAAGAAA
34286529 AAAAGAAAAAAGAAA
1 AAAAGAAAAAAGAAA
34286544 GAGTGTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAAGAAA
Found at i:34288391 original size:71 final size:71
Alignment explanation
Indices: 34288271--34288412 Score: 239
Period size: 71 Copynumber: 2.0 Consensus size: 71
34288261 TCTCGGATTT
* *
34288271 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATAATTTAAAA
1 AAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATAATTTAAAA
34288336 CTTGAG
66 CTTGAG
* **
34288342 AAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTCATTCCCGAGATCGTTTAAAA
1 AAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATAATTTAAAA
34288407 CTTGAG
66 CTTGAG
34288413 TTTGAAAAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (71 bp):
AAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATAATTTAAAA
CTTGAG
Found at i:34288921 original size:26 final size:26
Alignment explanation
Indices: 34288873--34288926 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
34288863 GTATATATAA
* *
34288873 ATTATAAAATATATGTACATATATGT
1 ATTATAAAATATATATACATATACGT
*
34288899 ATTATAAAATGTATATA-AGTATACGT
1 ATTATAAAATATATATACA-TATACGT
34288925 AT
1 AT
34288927 ATTTTAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (26 bp):
ATTATAAAATATATATACATATACGT
Found at i:34289020 original size:60 final size:59
Alignment explanation
Indices: 34288956--34289076 Score: 145
Period size: 58 Copynumber: 2.0 Consensus size: 59
34288946 TATACAAAAA
* * * *
34288956 AAGAATATATGTATGTATATATATATAGGAGTTATAAAATGTAAAACACATATATAT-TAT
1 AAGAATACATGTATATATATAT-TATA-AAGTTATAAAATATAAAACACATATATATGTAT
* * * *
34289016 AAGAATGCATGTATATATATATTTTAAAGTTATAGAATATAAAACACATATGTATGTAT
1 AAGAATACATGTATATATATATTATAAAGTTATAAAATATAAAACACATATATATGTAT
34289075 AA
1 AA
34289077 ATATATAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
58 25 0.48
59 8 0.15
60 19 0.37
ACGTcount: A:0.48, C:0.04, G:0.12, T:0.36
Consensus pattern (59 bp):
AAGAATACATGTATATATATATTATAAAGTTATAAAATATAAAACACATATATATGTAT
Found at i:34289187 original size:3 final size:3
Alignment explanation
Indices: 34289179--34289211 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
34289169 GTATGAACGA
34289179 AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
34289212 CACAATATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:34290875 original size:44 final size:44
Alignment explanation
Indices: 34290827--34290941 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 44
34290817 AGTCTGCTCC
*
34290827 ACTGCAACTTCAGGGAGATAAGACTTGCATA-TTCAACCTGCCCT
1 ACTGCAACTTCAGGGAGATAAGACTTG-ATACTTCAACCCGCCCT
** * *
34290871 ACTGCAACTTCAAGGG-GATAAGGTTTGTTACTTCAACCCGCTCT
1 ACTGCAACTTC-AGGGAGATAAGACTTGATACTTCAACCCGCCCT
*
34290915 ACTGCAACTTCAGAGAGATAAGACTTG
1 ACTGCAACTTCAGGGAGATAAGACTTG
34290942 TAGCCTGTCT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 5 0.08
44 51 0.85
45 4 0.07
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGACTTGATACTTCAACCCGCCCT
Found at i:34291377 original size:51 final size:51
Alignment explanation
Indices: 34291283--34291380 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
34291273 ATCTACTCCG
* * *
34291283 CTTTAGCTTTAATCTATTCCACTACAACGCTAGGGAAACAAGATTCGCTAC
1 CTTTAGCTTTAATCTATTCCACTACAACACCAGAGAAACAAGATTCGCTAC
* * * * *
34291334 CTTTAGCTTTAATCTGTTCCATTGCCACACCAGAGAAATAAGATTCG
1 CTTTAGCTTTAATCTATTCCACTACAACACCAGAGAAACAAGATTCG
34291381 TTGTTGTAGC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (51 bp):
CTTTAGCTTTAATCTATTCCACTACAACACCAGAGAAACAAGATTCGCTAC
Found at i:34291427 original size:50 final size:50
Alignment explanation
Indices: 34291372--34294205 Score: 2356
Period size: 50 Copynumber: 56.6 Consensus size: 50
34291362 ACCAGAGAAA
* * *
34291372 TAAGATTCGTTGTTGTAGCTTCAATCTATTTAACTGTAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *** * **** **
34291422 CAAGATTCGCTGTTGTAGCTTCAATCAATCCCACTGTACCACCAAAGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
*
34291472 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * ** * **
34291522 CAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTACACCG-CTAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC-AGGGAAG
* *
34291572 TAAGATTCGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * * * ** * ** *
34291622 CAGGATTCACTATTATAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *
34291672 TAAGATTCGCTGTTGTAGTTTCAATCTATTTAACTGCAATTTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* ** * ** *
34291722 TAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *
34291772 TAAGATTCACAGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * ** * * *
34291822 CAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTAC-ATCGCCAGAGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAAT-GTCAGGGAAG
* * * *
34291872 TAAGATTCGTTGTTGTAGCTTCAATATATTTAACTACAATGTC-GAGAAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAG-GGAAG
* * ** ** * *
34291922 CAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAGG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
**
34291972 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * ** * * *
34292022 CAAGATTTGCTGTTGTAGCTTCAATCCATTCGACTACACTGCCTA-GGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC-AGGGAAG
* *
34292072 TAAGATTCGCTGTTGTAGTTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *** * ** ****
34292122 CAATATTTATTGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
** *
34292172 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAGG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *** * * *
34292222 CAAGATTCGCTGTTGTACCTTCAATCTATCCCACTGCAACGCCAAGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* *** * * *
34292272 TAAGATTCACTGTTGTAGCTTCAATCTATCCCACTGCACTGCCAAGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
*
34292322 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * ** ** * *
34292372 AAAGATTCACTATTGTACCTTCAATCTATTCCACTGCACCGCCAAGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* *
34292422 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAATTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* ** * * ** *
34292472 CAAGATTAACTATTGTAGCTTCAATCTGTTCCACTGCACCA-G-CAGGGAGG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCA--ATGTCAGGGAAG
* * * * *
34292522 TAAGATTCGCTGTTGTAGCTTTAGTCTATTTAACTGGAATTTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * ** * ** *
34292572 CAATATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *
34292622 TAAGATTTGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * ** * * *
34292672 CAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTACACTGCCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * *
34292722 TAAGGTTCGTTGTTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * ** * *
34292772 CAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACTG-CTAGGGAGG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC-AGGGAAG
* * * * * *
34292822 TAAGATTCACTGTTGTAGGTTTAATCTATTTAACTGTAATGTTAGGAAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * * * *
34292872 CAAGATTCACTGTTGTAGCTTCAATCTGTTCCATCCGCACA-GTCAGGGAAT
1 TAAGATTCGCTGTTGTAGCTTCAATCTATT-TAACTGCA-ATGTCAGGGAAG
* * ** *
34292923 TAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGC-A-GCACTAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATG-TC-AGGGAAG
* * * **
34292973 TAAGATTCACTGTTGTAACTTCAATCTATTTAACTTCAATGTTGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * ** * * *
34293023 CAAGATTCGCTGTTGTAGCTTCAATCTGTTCGACTACACTGCCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * *
34293073 TAAGATTCACTGTTGTAGCTTCAATTTATTTAATTGCAATGTCGGGGAAGCG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAA--G
* * * * * ** ****
34293125 GAATATTCACTATTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * **
34293175 TAAGATTCGCTGTTGTAGCTTCAATATATTTAACTACAATTTTGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* ** * ** * *
34293225 CAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAGGAAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *
34293275 TAAGATTTGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * ** ** ** *
34293325 CAAGATTCACTGTTGTTGCTTTAATCGGTTCCACTGCACCGTCAAGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
**
34293375 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* *** ** * *
34293425 CAAGATTCGCTGTTGTAGCTTCAATCTATCCCACTGCACCGCCAAGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
*
34293475 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * * ** * * *
34293525 CAATATTCACTGTTGTAGCTTCAATCTGTTCT-ACTGCACCGCCTGGAAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATT-TAACTGCAATGTCAGGGAAG
* *
34293575 TAAGATTCGCTGTTGTAGC-TCAAATCTATTTAACTACAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTC-AATCTATTTAACTGCAATGTCAGGGAAG
* * * ** *
34293625 CAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCA-CT-AGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCA--ATGTCAGGGAAG
** * * *
34293675 TAAGATTTACTGTTGTAACTTCAATCTATTTAAATGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * ** * ** *
34293725 AAAGATTCGCTGTTGTAGCTTCAATCTGTTCGACTACACCGCCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* *
34293775 TAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
** * * ** * ** * **
34293825 TAAGATTCATTGTTATAGCTTCAATCTGTTCCACTGTACCGCCAGAAAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * *
34293875 TAAGATTCGCTGTTTTAGCTTCAATCTATTTTACTGCAATATCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * ** *** * *
34293925 CAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCGCCGCCAGGGAGG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * *
34293975 TAAGATTCACTGTTGTAGCTTCAATCTATATAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * ** * **
34294025 CAAGATTC-ATGTTGTAGCTTCAATCTGTTCCATTGCACA-CCCAGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCA-ATGTCAGGGAAG
* *
34294074 TAAGATTCGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
* * * ** * * *
34294124 CAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTACACCA-CT-AAGGAAG
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCA--ATGTCAGGGAAG
*
34294174 TAAGATTTGCTGTTGTAGCTTCAATCTATTTA
1 TAAGATTCGCTGTTGTAGCTTCAATCTATTTA
34294206 GGGGGACGGG
Statistics
Matches: 2137, Mismatches: 612, Indels: 70
0.76 0.22 0.02
Matches are distributed among these distances:
48 4 0.00
49 48 0.02
50 1992 0.93
51 51 0.02
52 42 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (50 bp):
TAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAG
Found at i:34291491 original size:100 final size:100
Alignment explanation
Indices: 34291315--34294205 Score: 3192
Period size: 100 Copynumber: 28.9 Consensus size: 100
34291305 TACAACGCTA
* * * * * * *
34291315 GGGAAACAAGATTCGCTACCTT-TAGCTTTAATCTGTTCCATTGC-CACACCAGAGAAATAAGAT
1 GGGAAGCAAGATTCGCT--GTTGTAGCTTCAATCTGTTCCACTGCAC-CGCCAGGGAAGTAAGAT
* *
34291378 TCGTTGTTGTAGCTTCAATCTATTTAACTGTAATGTCG
63 TCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
** * * * **
34291416 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCAATCCCACTGTACCACCAAAGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
34291481 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * *
34291516 GGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTACACCGCTAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34291581 TTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * *
34291616 GGGAAGCAGGATTCACTATTATAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
34291681 CTGTTGTAGTTTCAATCTATTTAACTGCAATTTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * *
34291716 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34291781 CAGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * *
34291816 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACATCGCCAGAGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
34291881 TTGTTGTAGCTTCAATATATTTAACTACAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * *
34291916 AGAAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAGGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34291981 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTTG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* ** * * *
34292016 GGGAAGCAAGATTTGCTGTTGTAGCTTCAATCCATTCGACTACACTGCCTA-GGAAGTAAGATTC
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCC-AGGGAAGTAAGATTC
*
34292080 GCTGTTGTAGTTTCAATCTATTTAACTGCAATGTCG
65 GCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* *** *
34292116 GGGAAGCAATATTTATTGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34292181 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTTG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * * * *
34292216 GGGAGGCAAGATTCGCTGTTGTACCTTCAATCTATCCCACTGCAACGCCAAGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*** * * *
34292281 CTGTTGTAGCTTCAATCTATCCCACTGCACTGCCA
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * ** ** * * * *
34292316 AGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGAAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * ** ** * *
34292381 CTATTGTACCTTCAATCTATTCCACTGCACCGCCA
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * ** * ** * * * **
34292416 AGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAATTGCAATGTCGGGGAAGCAAGATTAA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * ** *
34292481 CTATTGTAGCTTCAATCTGTTCCACTGCACCA-G-CA
66 CTGTTGTAGCTTCAATCTATTTAACTGCA--ATGTCG
* * * * * ** * **** * * *
34292516 GGGAGGTAAGATTCGCTGTTGTAGCTTTAGTCTATTTAACTGGAATTTCGGGGAAGCAATATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * ** * ** * *
34292581 TTGTTGTAGCTTCAATCTGTTCCACTACACCGCCA
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * ** ** * * * *
34292616 GGGAAGTAAGATTTGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * ** * * * *
34292681 CTGTTGTAGCTTTAATCTGTTCCACTACACTGCCA
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * ** * ** * * * *
34292716 GGGAAGTAAGGTTCGTTGTTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * ** * *
34292781 CTGTTGTAGCTTTAATCTGTTCCACTGCACTG-CTA
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTC-G
* * * * * * ** * ** ** * * *
34292816 GGGAGGTAAGATTCACTGTTGTAGGTTTAATCTATTTAACTGTAATGTTAGGAAAGCAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * * * *
34292881 CTGTTGTAGCTTCAATCTGTTCCATCCGCACA-GTCA
66 CTGTTGTAGCTTCAATCTATT-TAACTGCA-ATGTCG
** * * * * *
34292917 GGGAATTAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCAGCACTAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
34292982 CTGTTGTAACTTCAATCTATTTAACTTCAATGTTG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * *
34293017 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCGACTACACTGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
34293082 CTGTTGTAGCTTCAATTTATTTAATTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * *
34293117 GGGAAGCGGAATATTCACTATTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGATT
1 GGGAAGC--AAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATT
* * * *
34293182 CGCTGTTGTAGCTTCAATATATTTAACTACAATTTTG
64 CGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * *
34293219 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAGGAAAGTAAGATTTG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34293284 TTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * * *
34293319 GGGAAGCAAGATTCACTGTTGTTGCTTTAATCGGTTCCACTGCACCGTCAAGGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34293384 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTTG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * *
34293419 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATCCCACTGCACCGCCAAGGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
34293484 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * *
34293519 GGGAAGCAATATTCACTGTTGTAGCTTCAATCTGTTCTACTGCACCGCCTGGAAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34293584 CTGTTGTAGC-TCAAATCTATTTAACTACAATGTCG
66 CTGTTGTAGCTTC-AATCTATTTAACTGCAATGTCG
* * * **
34293619 GGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCACTAGGGAAGTAAGATTTA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* *
34293684 CTGTTGTAACTTCAATCTATTTAAATGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * *
34293719 GGGAAGAAAGATTCGCTGTTGTAGCTTCAATCTGTTCGACTACACCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
34293784 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* ** * * **
34293819 GGGAAGTAAGATTCATTGTTATAGCTTCAATCTGTTCCACTGTACCGCCAGAAAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
* * *
34293884 CTGTTTTAGCTTCAATCTATTTTACTGCAATATCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * *
34293919 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCGCCGCCAGGGAGGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
*
34293984 CTGTTGTAGCTTCAATCTATATAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* *
34294019 GGGAAGCAAGATTC-ATGTTGTAGCTTCAATCTGTTCCATTGCACAC-CCAGGGAAGTAAGATTC
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCAC-CGCCAGGGAAGTAAGATTC
*
34294082 GTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
65 GCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * * *
34294118 GGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTACACCACTAAGGAAGTAAGATTTG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
34294183 CTGTTGTAGCTTCAATCTATTTA
66 CTGTTGTAGCTTCAATCTATTTA
34294206 GGGGGACGGG
Statistics
Matches: 2452, Mismatches: 318, Indels: 41
0.87 0.11 0.01
Matches are distributed among these distances:
99 99 0.04
100 2167 0.88
101 98 0.04
102 88 0.04
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (100 bp):
GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG
CTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
Found at i:34295626 original size:6 final size:6
Alignment explanation
Indices: 34295611--34295666 Score: 58
Period size: 6 Copynumber: 8.8 Consensus size: 6
34295601 GGCCTCTCTT
* * *
34295611 TTTTTC TTTTCTT TTTCTTC TTTTTC TTTTTC TTTTCTT TTTTTC TTCTTC
1 TTTTTC TTTT-TC TTT-TTC TTTTTC TTTTTC TTTT-TC TTTTTC TTTTTC
34295662 TTTTT
1 TTTTT
34295667 TTGAAATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
6 27 0.66
7 13 0.32
8 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:34295627 original size:11 final size:10
Alignment explanation
Indices: 34295609--34295668 Score: 68
Period size: 11 Copynumber: 5.7 Consensus size: 10
34295599 TTGGCCTCTC
34295609 TTTTTTTCTT
1 TTTTTTTCTT
34295619 TTCTTTTTC-T
1 TT-TTTTTCTT
*
34295629 TCTTTTTCTT
1 TTTTTTTCTT
34295639 TTTCTTTTCTT
1 TTT-TTTTCTT
34295650 TTTTTCTTCTT
1 TTTTT-TTCTT
34295661 CTTTTTTT
1 -TTTTTTT
34295669 GAAATATACT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
9 6 0.14
10 9 0.21
11 23 0.53
12 5 0.12
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:34295667 original size:26 final size:27
Alignment explanation
Indices: 34295610--34295667 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
34295600 TGGCCTCTCT
*
34295610 TTTTTTCTTTTCTTTTTCTTCTTTTTC
1 TTTTTTCTTTTCTTTTTCTTCTTCTTC
34295637 -TTTTTCTTTTCTTTTT-TTCTTCTTC
1 TTTTTTCTTTTCTTTTTCTTCTTCTTC
34295662 TTTTTT
1 TTTTTT
34295668 TGAAATATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 8 0.28
26 21 0.72
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (27 bp):
TTTTTTCTTTTCTTTTTCTTCTTCTTC
Found at i:34300852 original size:70 final size:71
Alignment explanation
Indices: 34300738--34300874 Score: 222
Period size: 70 Copynumber: 1.9 Consensus size: 71
34300728 TCTCGGATTT
* *
34300738 AAAAAAGGGATCATGCCCAGTAAATTAGGACACGATCTTTTCTTAATTCCCGAGATAATTTAAAA
1 AAAAAAGGGATCATGCCCAGTAAATTAGGACACGATCTCTTCTTAATTCCCAAGATAATTTAAAA
34300803 CTTGAG
66 CTTGAG
* **
34300809 AAAAAA-GGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCAAGATCGTTTAAAA
1 AAAAAAGGGATCATGCCCAGTAAATTAGGACACGATCTCTTCTTAATTCCCAAGATAATTTAAAA
34300873 CT
66 CT
34300875 GGAGTTTGAA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
70 55 0.90
71 6 0.10
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (71 bp):
AAAAAAGGGATCATGCCCAGTAAATTAGGACACGATCTCTTCTTAATTCCCAAGATAATTTAAAA
CTTGAG
Found at i:34301348 original size:28 final size:28
Alignment explanation
Indices: 34301309--34301411 Score: 76
Period size: 26 Copynumber: 3.8 Consensus size: 28
34301299 TTGTCAAAAA
*
34301309 TATAACAA-ATATATATGTATATATAAAT
1 TATAA-AATATATATAAGTATATATAAAT
* *
34301337 TATAAAATATATGTACA-TATATGT--AT
1 TATAAAATATATATA-AGTATATATAAAT
* *
34301363 TATAAAATGTATATAAGTATACT-TATAT
1 TATAAAATATATATAAGTATA-TATAAAT
*
34301391 TTTAAAAT-TATA-AAGTATATA
1 TATAAAATATATATAAGTATATA
34301412 CAAAAAAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
25 2 0.03
26 27 0.44
27 7 0.11
28 26 0.42
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (28 bp):
TATAAAATATATATAAGTATATATAAAT
Found at i:34301383 original size:26 final size:25
Alignment explanation
Indices: 34301309--34301411 Score: 75
Period size: 28 Copynumber: 3.9 Consensus size: 25
34301299 TTGTCAAAAA
* *
34301309 TATAACAAATATATATGTATATATAAAT
1 TATAA-AATTATATAAGTATATAT--AT
* *
34301337 TATAAAATATATGTACA-TATATGTAT
1 TATAAAAT-TATATA-AGTATATATAT
34301363 TATAAAATGTATATAAGTATACTTATAT
1 TATAAAAT-TATATAAGTATA--TATAT
*
34301391 TTTAAAATTATA-AAGTATATA
1 TATAAAATTATATAAGTATATA
34301412 CAAAAAAGAA
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
24 2 0.03
25 1 0.02
26 26 0.42
27 6 0.10
28 27 0.44
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (25 bp):
TATAAAATTATATAAGTATATATAT
Found at i:34314086 original size:40 final size:41
Alignment explanation
Indices: 34313998--34314087 Score: 94
Period size: 42 Copynumber: 2.2 Consensus size: 41
34313988 ATTTTCCGCG
* * *
34313998 AAATCGCGTCCACGTCAGCCCGATGTCAGGGTACGTGTCAG
1 AAATCGCGTCCACGTCAGCCCGATGTCAGCGTACGTGACAC
* * *
34314039 AACATCGCGTCCACGTCAGCGCGAT-T-TGCTTACGTGGACAC
1 AA-ATCGCGTCCACGTCAGCCCGATGTCAGCGTACGT-GACAC
34314080 AAATCGCG
1 AAATCGCG
34314088 CCTACAAGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
40 12 0.29
41 8 0.20
42 21 0.51
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (41 bp):
AAATCGCGTCCACGTCAGCCCGATGTCAGCGTACGTGACAC
Found at i:34317535 original size:42 final size:42
Alignment explanation
Indices: 34317480--34317577 Score: 160
Period size: 42 Copynumber: 2.3 Consensus size: 42
34317470 ATATGAACGA
* * *
34317480 CACTAAGTGTGCGAAATTAAAATAATGATGTTGGATAATGGT
1 CACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACGGG
*
34317522 CACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAACGGG
1 CACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACGGG
34317564 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
34317578 TACCGAGAGC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.26, T:0.28
Consensus pattern (42 bp):
CACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACGGG
Found at i:34320832 original size:22 final size:20
Alignment explanation
Indices: 34320798--34320841 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
34320788 TACCGAATCG
*
34320798 TAAACAATTAAAATTTTAAT
1 TAAACAATTAAAATTATAAT
34320818 TAAACATATTTAAAATTATAAT
1 TAAACA-A-TTAAAATTATAAT
34320840 TA
1 TA
34320842 TAAATGCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 1 0.05
22 14 0.67
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAACAATTAAAATTATAAT
Found at i:34327161 original size:32 final size:32
Alignment explanation
Indices: 34327120--34327186 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
34327110 TTCTAAAGAC
*
34327120 AAGTATATAAGGTATTTCCATATTATCTTACT
1 AAGTATATAAGGTATTTCCATATTATCGTACT
34327152 AAGTATATAAGGTATTTCCATATTATCGTACT
1 AAGTATATAAGGTATTTCCATATTATCGTACT
34327184 AAG
1 AAG
34327187 CTTTATGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (32 bp):
AAGTATATAAGGTATTTCCATATTATCGTACT
Found at i:34329118 original size:24 final size:27
Alignment explanation
Indices: 34329063--34329118 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
34329053 CTTTTCGTAT
*
34329063 ATTTGATTTTTTTAATACATATGTTTTT
1 ATTTGATTTTTTTAATACATA-GTTTTC
34329091 ATTTGATTTTTTT-ATA-ATA-TTTTC
1 ATTTGATTTTTTTAATACATAGTTTTC
34329115 ATTT
1 ATTT
34329119 TTAAATCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 8 0.30
26 3 0.11
27 3 0.11
28 13 0.48
ACGTcount: A:0.25, C:0.04, G:0.05, T:0.66
Consensus pattern (27 bp):
ATTTGATTTTTTTAATACATAGTTTTC
Found at i:34329618 original size:10 final size:8
Alignment explanation
Indices: 34329572--34329613 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
34329562 AAAACATATA
34329572 TTTAT-AT
1 TTTATAAT
* *
34329579 TATATCAT
1 TTTATAAT
34329587 TTTATAAT
1 TTTATAAT
34329595 TTTATAAT
1 TTTATAAT
34329603 TTTATAAT
1 TTTATAAT
34329611 TTT
1 TTT
34329614 TTATATAGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
7 4 0.13
8 27 0.87
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTATAAT
Found at i:34346747 original size:34 final size:32
Alignment explanation
Indices: 34346691--34346754 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 32
34346681 ATTTTTAGCA
*
34346691 CTGAGAAATGTTGTATAGTGGAGGGATGGAGAGG
1 CTGAGAAATGTTGAATAGTGGA--GATGGAGAGG
34346725 CTGAGAAATGTTGAAATA-TGGAGATGGAGA
1 CTGAGAAATGTTG-AATAGTGGAGATGGAGA
34346755 CCCCTTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 8 0.29
34 17 0.61
35 3 0.11
ACGTcount: A:0.34, C:0.03, G:0.39, T:0.23
Consensus pattern (32 bp):
CTGAGAAATGTTGAATAGTGGAGATGGAGAGG
Found at i:34354745 original size:20 final size:20
Alignment explanation
Indices: 34354720--34354757 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34354710 TTAATAATTC
*
34354720 AATAAATTTAAAAATTAGAT
1 AATAAAATTAAAAATTAGAT
*
34354740 AATAAAATTAAAATTTAG
1 AATAAAATTAAAAATTAG
34354758 GAGAAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
AATAAAATTAAAAATTAGAT
Found at i:34356581 original size:12 final size:12
Alignment explanation
Indices: 34356556--34356594 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
34356546 TACTTCTTCT
* *
34356556 TTACTTACTCAC
1 TTACTTGCTTAC
*
34356568 TTACTTGTTTAC
1 TTACTTGCTTAC
34356580 TTACTTGCTTAC
1 TTACTTGCTTAC
34356592 TTA
1 TTA
34356595 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:34356910 original size:49 final size:49
Alignment explanation
Indices: 34356797--34357035 Score: 172
Period size: 49 Copynumber: 4.7 Consensus size: 49
34356787 TAATAACATT
* ** * * * **
34356797 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTACTA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATGGTA
* ** * ** *
34356846 CCAATGTCAAATCCCAGATATGGTCTTACATGGGAGTTCTCATATGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATGGTA
* ** * * *
34356895 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTTATCTCGGTT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-GGTA
* * **
34356945 CCAACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T-GGT-A
*
34356999 TGTCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 --CCAATGCCATGTCCCAGACATGGTCTTACATGGGA
34357036 TCTCATTCCC
Statistics
Matches: 147, Mismatches: 36, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
49 70 0.48
50 42 0.29
53 3 0.02
56 32 0.22
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATGGTA
Found at i:34378323 original size:17 final size:17
Alignment explanation
Indices: 34378301--34378340 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
34378291 AAAGAGATAA
34378301 AATTTTTAATTTAAT-TT
1 AATTTTT-ATTTAATGTT
34378318 AATTTTTATTTAATGTT
1 AATTTTTATTTAATGTT
34378335 AATTTT
1 AATTTT
34378341 AAATATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
AATTTTTATTTAATGTT
Found at i:34378768 original size:20 final size:20
Alignment explanation
Indices: 34378745--34378782 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34378735 TAATAGTTGC
*
34378745 TTTAAGTTAATAAAACTAAG
1 TTTAAGATAATAAAACTAAG
*
34378765 TTTAAGATAATTAAACTA
1 TTTAAGATAATAAAACTA
34378783 GATTAATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (20 bp):
TTTAAGATAATAAAACTAAG
Found at i:34382333 original size:68 final size:68
Alignment explanation
Indices: 34382237--34382433 Score: 207
Period size: 62 Copynumber: 3.0 Consensus size: 68
34382227 TTTAATAGAT
* * * *
34382237 TTAATATTTAATTTAATTTAATACTTATCTTAAT-AGTATTTTATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTTAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
34382301 TATC
66 TA-C
* * *
34382305 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTAAGTT-A-A-T-AA--
1 TTAATATTAAATTTAATTTAATATTTATC-T-TA-ATAAATATTATATTAATTTAATATTAAAGT
34382364 G---AC
63 GATTAC
* *
34382367 TTAATATTAAATTTAATATAATATTTATCTTGATAAATATTATATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTTAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
34382432 TA
66 TA
34382434 AGTTTAATCA
Statistics
Matches: 105, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
59 17 0.16
60 2 0.02
61 2 0.02
62 29 0.28
63 3 0.03
65 1 0.01
66 1 0.01
68 29 0.28
69 2 0.02
70 3 0.03
71 3 0.03
72 13 0.12
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.50
Consensus pattern (68 bp):
TTAATATTAAATTTAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
TAC
Found at i:34383350 original size:21 final size:21
Alignment explanation
Indices: 34383310--34383348 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
34383300 AAATCATGGA
34383310 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
34383331 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
34383349 TCGTAGGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:34390595 original size:16 final size:15
Alignment explanation
Indices: 34390558--34390597 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
34390548 GATTTTTTAA
34390558 AATTTAATATTATGTT
1 AATTTAA-ATTATGTT
34390574 AA-TTAAATTATTGTT
1 AATTTAAATTA-TGTT
34390589 AATTTAAAT
1 AATTTAAAT
34390598 GTAAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 10 0.45
16 8 0.36
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (15 bp):
AATTTAAATTATGTT
Found at i:34398048 original size:14 final size:14
Alignment explanation
Indices: 34398029--34398055 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34398019 GTGGTCTAGT
34398029 TGAACTGAACCGAG
1 TGAACTGAACCGAG
34398043 TGAACTGAACCGA
1 TGAACTGAACCGA
34398056 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:34407974 original size:34 final size:32
Alignment explanation
Indices: 34407929--34407993 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 32
34407919 AATAATGAAA
* *
34407929 ATATTTTTTTTCATTTTTTTTTTAGTTTTCAC
1 ATATTTTTTTTCAATTTTTTTTTAATTTTCAC
34407961 ATATTTTCATTTTCAATTTTTTTTTAATTTTCA
1 ATATTTT--TTTTCAATTTTTTTTTAATTTTCA
34407994 ATCAAATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 7 0.24
34 22 0.76
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.69
Consensus pattern (32 bp):
ATATTTTTTTTCAATTTTTTTTTAATTTTCAC
Found at i:34408304 original size:20 final size:19
Alignment explanation
Indices: 34408274--34408334 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
34408264 TTTTTCTTGA
*
34408274 ATTTTTATGAATTTTTTAT
1 ATTTTTTTGAATTTTTTAT
*
34408293 TTTTATTTTGAAATTTTCTTA-
1 ATTT-TTTTG-AATTTT-TTAT
34408314 ATTTTTTTGAATATTTTTAT
1 ATTTTTTTGAAT-TTTTTAT
34408334 A
1 A
34408335 AACTTCAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
19 9 0.26
20 13 0.38
21 9 0.26
22 3 0.09
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (19 bp):
ATTTTTTTGAATTTTTTAT
Found at i:34408307 original size:21 final size:19
Alignment explanation
Indices: 34408273--34408331 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 19
34408263 CTTTTTCTTG
*
34408273 AATTTTTATG-AATTTTTT
1 AATTTTTTTGAAATTTTTT
*
34408291 ATTTTTATTTTGAAATTTTCTT
1 A-ATTT-TTTTGAAATTTT-TT
34408313 AATTTTTTTGAATATTTTT
1 AATTTTTTTGAA-ATTTTT
34408332 ATAAACTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.03
19 3 0.09
20 12 0.36
21 14 0.42
22 3 0.09
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (19 bp):
AATTTTTTTGAAATTTTTT
Found at i:34418495 original size:12 final size:12
Alignment explanation
Indices: 34418478--34418502 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34418468 GGATGCTTCC
34418478 AAAATGGAAATG
1 AAAATGGAAATG
34418490 AAAATGGAAATG
1 AAAATGGAAATG
34418502 A
1 A
34418503 TTCATTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:34426776 original size:15 final size:16
Alignment explanation
Indices: 34426735--34426777 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
34426725 AAAGACATTA
*
34426735 TATAATAACAAATCAAC
1 TATAA-AACAAAACAAC
34426752 TATAAAACAAAACAA-
1 TATAAAACAAAACAAC
*
34426767 TATAACACAAA
1 TATAAAACAAA
34426778 TATATCATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 9 0.38
17 5 0.21
ACGTcount: A:0.65, C:0.16, G:0.00, T:0.19
Consensus pattern (16 bp):
TATAAAACAAAACAAC
Found at i:34437245 original size:18 final size:19
Alignment explanation
Indices: 34437222--34437259 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
34437212 GGCTAATTAC
34437222 ATCCCAAA-AATCTGCTAT
1 ATCCCAAATAATCTGCTAT
34437240 ATCCCAAATAATCTGCTAT
1 ATCCCAAATAATCTGCTAT
34437259 A
1 A
34437260 CCAATTAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.29
Consensus pattern (19 bp):
ATCCCAAATAATCTGCTAT
Found at i:34441223 original size:15 final size:15
Alignment explanation
Indices: 34441200--34441240 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
34441190 CTTTTGTTCA
34441200 AATCTTGTTGTAGAT
1 AATCTTGTTGTAGAT
* *
34441215 AATCGTGTTGTGGAT
1 AATCTTGTTGTAGAT
34441230 AATCTTGTTGT
1 AATCTTGTTGT
34441241 TTATTGTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (15 bp):
AATCTTGTTGTAGAT
Found at i:34442766 original size:3 final size:3
Alignment explanation
Indices: 34442758--34442785 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
34442748 ATATTAAGAG
34442758 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
34442786 AAGGAAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:34446588 original size:140 final size:140
Alignment explanation
Indices: 34446336--34446616 Score: 553
Period size: 140 Copynumber: 2.0 Consensus size: 140
34446326 ACACCTTGAC
34446336 AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
1 AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
34446401 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
66 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
34446466 AACTATGATT
131 AACTATGATT
*
34446476 AGCACTGGCAAGTAGTGTACCATCTGCACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
1 AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
34446541 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
66 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
34446606 AACTATGATT
131 AACTATGATT
34446616 A
1 A
34446617 AAGAAATGCA
Statistics
Matches: 140, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 140 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (140 bp):
AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
AACTATGATT
Found at i:34449883 original size:17 final size:17
Alignment explanation
Indices: 34449861--34449898 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
34449851 TACGAACTAA
*
34449861 TTGGTGAATCCTGTGTT
1 TTGGTGAATCATGTGTT
*
34449878 TTGGTGAATTATGTGTT
1 TTGGTGAATCATGTGTT
34449895 TTGG
1 TTGG
34449899 CGAGATTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.13, C:0.05, G:0.32, T:0.50
Consensus pattern (17 bp):
TTGGTGAATCATGTGTT
Found at i:34460219 original size:40 final size:40
Alignment explanation
Indices: 34460154--34460287 Score: 148
Period size: 39 Copynumber: 3.4 Consensus size: 40
34460144 TGTTAGATAG
*
34460154 ACCG-AACACACCAAACAGAAA-CTCATAAGAGCTGATCCA
1 ACCGAAACACGCCAAACA-AAAGCTCATAAGAGCTGATCCA
* * *
34460193 ATCGAAATACGCCAAACAAAAGCTCATAAGAGCTGGTCCA
1 ACCGAAACACGCCAAACAAAAGCTCATAAGAGCTGATCCA
* * *
34460233 CCCGAAACACGCC-AATAGAAGCTCATAAGAGCTGATCCA
1 ACCGAAACACGCCAAACAAAAGCTCATAAGAGCTGATCCA
* * *
34460272 CCCGAATCACACCAAA
1 ACCGAAACACGCCAAA
34460288 TAGAAAGTAT
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
39 40 0.50
40 40 0.50
ACGTcount: A:0.43, C:0.31, G:0.15, T:0.12
Consensus pattern (40 bp):
ACCGAAACACGCCAAACAAAAGCTCATAAGAGCTGATCCA
Found at i:34460266 original size:39 final size:40
Alignment explanation
Indices: 34460158--34460292 Score: 164
Period size: 40 Copynumber: 3.4 Consensus size: 40
34460148 AGATAGACCG
* * * **
34460158 AACACACCAAACAGAAACTCATAAGAGCTGATCCAATCGA
1 AACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCGA
* * * *
34460198 AATACGCCAAACAAAAGCTCATAAGAGCTGGTCCACCCGA
1 AACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCGA
34460238 AACACGCC-AATAGAAGCTCATAAGAGCTGATCCACCCGA
1 AACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCGA
* *
34460277 ATCACACCAAATAGAA
1 AACACGCCAAATAGAA
34460293 AGTATAACAT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 34 0.42
40 47 0.58
ACGTcount: A:0.44, C:0.29, G:0.15, T:0.13
Consensus pattern (40 bp):
AACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCGA
Found at i:34461970 original size:13 final size:13
Alignment explanation
Indices: 34461952--34462008 Score: 62
Period size: 13 Copynumber: 4.4 Consensus size: 13
34461942 AGCATGCGTG
34461952 AAACATATCTTTA
1 AAACATATCTTTA
* *
34461965 AAACATAGCTTAA
1 AAACATATCTTTA
* *
34461978 AAACATAACTTGA
1 AAACATATCTTTA
34461991 AAACATAT-TTTGA
1 AAACATATCTTT-A
34462004 AAACA
1 AAACA
34462009 GAGTATTAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
12 2 0.05
13 35 0.95
ACGTcount: A:0.53, C:0.14, G:0.05, T:0.28
Consensus pattern (13 bp):
AAACATATCTTTA
Found at i:34467032 original size:18 final size:19
Alignment explanation
Indices: 34466995--34467032 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
34466985 CTAAGTTAGC
*
34466995 TAAAACTAAGAAAACAAAA
1 TAAAACTAACAAAACAAAA
*
34467014 TAAAA-TAACAAAACCAAA
1 TAAAACTAACAAAACAAAA
34467032 T
1 T
34467033 TTCATCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.71, C:0.13, G:0.03, T:0.13
Consensus pattern (19 bp):
TAAAACTAACAAAACAAAA
Found at i:34473031 original size:16 final size:17
Alignment explanation
Indices: 34473012--34473049 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
34473002 AGAGAGTTGA
34473012 GAGAGAGGATG-GAGAT
1 GAGAGAGGATGAGAGAT
*
34473028 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
34473044 GAGAGA
1 GAGAGA
34473050 TGCCTGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.37, C:0.00, G:0.53, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:34475214 original size:16 final size:16
Alignment explanation
Indices: 34475190--34475223 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
34475180 ATTAAATCCT
34475190 AATTACTAAAGAAATA
1 AATTACTAAAGAAATA
* *
34475206 AATTCCTAAAGAACTA
1 AATTACTAAAGAAATA
34475222 AA
1 AA
34475224 AAATAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.24
Consensus pattern (16 bp):
AATTACTAAAGAAATA
Found at i:34476637 original size:10 final size:10
Alignment explanation
Indices: 34476622--34476646 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
34476612 TTGGCACTTA
34476622 TCACAGTTCT
1 TCACAGTTCT
34476632 TCACAGTTCT
1 TCACAGTTCT
34476642 TCACA
1 TCACA
34476647 TAAGCGTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (10 bp):
TCACAGTTCT
Found at i:34481666 original size:16 final size:17
Alignment explanation
Indices: 34481639--34481673 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
34481629 AGAGAGTTGA
34481639 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
34481656 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
34481672 GA
1 GA
34481674 TGAATGCCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.51, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:34482142 original size:14 final size:14
Alignment explanation
Indices: 34482123--34482151 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
34482113 CAATTTTATT
34482123 AATGAATTATTTAA
1 AATGAATTATTTAA
34482137 AATGAATTATTTAA
1 AATGAATTATTTAA
34482151 A
1 A
34482152 TATAACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
AATGAATTATTTAA
Found at i:34498877 original size:35 final size:35
Alignment explanation
Indices: 34498831--34498932 Score: 116
Period size: 35 Copynumber: 2.9 Consensus size: 35
34498821 CTTATTCCAG
34498831 TGACCTATATACCATTTACACGGTGTCGCCCCAAA
1 TGACCTATATACCATTTACACGGTGTCGCCCCAAA
* ** ** *
34498866 TGACCTATATACCATTTATATTGTGTTTCCTCTAAA
1 TGACCTATATACCATTTACACGGTGTCGCC-CCAAA
* *
34498902 -GACCTATATACCATTTTCACGGTATCGCCCC
1 TGACCTATATACCATTTACACGGTGTCGCCCC
34498933 GAAGGACAAA
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
34 1 0.02
35 47 0.90
36 4 0.08
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (35 bp):
TGACCTATATACCATTTACACGGTGTCGCCCCAAA
Found at i:34509415 original size:4 final size:4
Alignment explanation
Indices: 34509406--34509489 Score: 77
Period size: 4 Copynumber: 20.5 Consensus size: 4
34509396 AATTTTTATT
*
34509406 TTTA TTTA -TTA TTTA TTTA TTTA TTTA TTTA -TTA TTTTA TTTTC TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA TTTA
34509454 CTTTA TTTA -TTA CTTTA TTTTA TTT- TATTA TTTA TT
1 -TTTA TTTA TTTA -TTTA -TTTA TTTA T-TTA TTTA TT
34509490 ACTTATTTGG
Statistics
Matches: 69, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
3 10 0.14
4 40 0.58
5 19 0.28
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:34511194 original size:15 final size:15
Alignment explanation
Indices: 34511169--34511203 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
34511159 GACTCTATTT
*
34511169 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
34511183 TAATTAATATTAAGA
1 TAATTAATATTAAGA
34511198 TAATTA
1 TAATTA
34511204 TTATGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:34521657 original size:57 final size:58
Alignment explanation
Indices: 34521539--34521657 Score: 141
Period size: 57 Copynumber: 2.1 Consensus size: 58
34521529 AAAAATGGTG
* * * * *
34521539 AAATAGAGAAATGGGAAACATTAGGAAATGAATGAGGTTTTCTCCCAAATTAAAATGA
1 AAATAGAGAAATGAGAAACATTAGGAAATGAATGAGGTTTCCTCCAAAATGAAAATAA
* * * * *
34521597 AAATAGGGAAAT-AGAATCATTTGGAAATGAATGTGGTTTCCTCCAAAATGAAATTAA
1 AAATAGAGAAATGAGAAACATTAGGAAATGAATGAGGTTTCCTCCAAAATGAAAATAA
34521654 AAAT
1 AAAT
34521658 GAAAAAAAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
57 40 0.78
58 11 0.22
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.26
Consensus pattern (58 bp):
AAATAGAGAAATGAGAAACATTAGGAAATGAATGAGGTTTCCTCCAAAATGAAAATAA
Found at i:34524430 original size:34 final size:34
Alignment explanation
Indices: 34524384--34524454 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
34524374 CTCTCGTAGA
*
34524384 ACTAACATGTGGCTAACATGCAAAGCTAACACAT
1 ACTAACACGTGGCTAACATGCAAAGCTAACACAT
34524418 ACTAACACGTGGCTAACATGCAAAGCTAACACAT
1 ACTAACACGTGGCTAACATGCAAAGCTAACACAT
34524452 ACT
1 ACT
34524455 CTATTGTGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.41, C:0.25, G:0.14, T:0.20
Consensus pattern (34 bp):
ACTAACACGTGGCTAACATGCAAAGCTAACACAT
Found at i:34527558 original size:3 final size:3
Alignment explanation
Indices: 34527550--34527596 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
34527540 CACGTTTTGT
34527550 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
34527597 TTTCCTTGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:34528147 original size:7 final size:7
Alignment explanation
Indices: 34528131--34528165 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
34528121 AGCACTATCA
34528131 ATATGTG
1 ATATGTG
*
34528138 ATACGTG
1 ATATGTG
34528145 ATATGTG
1 ATATGTG
34528152 ATATGTG
1 ATATGTG
34528159 ATATGTG
1 ATATGTG
34528166 TTGATGAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.03, G:0.29, T:0.40
Consensus pattern (7 bp):
ATATGTG
Found at i:34529941 original size:22 final size:22
Alignment explanation
Indices: 34529915--34529961 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
34529905 CTTTTATGGA
*
34529915 TATCACAAAATCAGACCCTTGG
1 TATCACAAAATCAGACCCCTGG
* *
34529937 TATCACGATATCAGACCCCTGG
1 TATCACAAAATCAGACCCCTGG
34529959 TAT
1 TAT
34529962 GGCGATACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (22 bp):
TATCACAAAATCAGACCCCTGG
Found at i:34529967 original size:22 final size:22
Alignment explanation
Indices: 34529926--34530000 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
34529916 ATCACAAAAT
* ** *
34529926 CAGACCCTTGGTATCACGATAT
1 CAGACCCCTGGTATGGCGATAC
34529948 CAGACCCCTGGTATGGCGATAC
1 CAGACCCCTGGTATGGCGATAC
* * *
34529970 CAGACCCTTAGTATGGAGATAC
1 CAGACCCCTGGTATGGCGATAC
34529992 CAGACCCCT
1 CAGACCCCT
34530001 AGCATCGTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (22 bp):
CAGACCCCTGGTATGGCGATAC
Found at i:34530035 original size:22 final size:22
Alignment explanation
Indices: 34529942--34530040 Score: 83
Period size: 22 Copynumber: 4.5 Consensus size: 22
34529932 CTTGGTATCA
* * * *
34529942 CGATATCAGACCCCTGGTATGG
1 CGATACCAGACCCCTAGCATCG
* * *
34529964 CGATACCAGACCCTTAGTATGG
1 CGATACCAGACCCCTAGCATCG
*
34529986 AGATACCAGACCCCTAGCATCG
1 CGATACCAGACCCCTAGCATCG
**
34530008 TAATACC-GAACCCCTAGCATCG
1 CGATACCAG-ACCCCTAGCATCG
*
34530030 CGATACTAGAC
1 CGATACCAGAC
34530041 TCATTGCATG
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
21 1 0.02
22 61 0.97
23 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (22 bp):
CGATACCAGACCCCTAGCATCG
Found at i:34530272 original size:287 final size:289
Alignment explanation
Indices: 34529754--34530323 Score: 781
Period size: 287 Copynumber: 2.0 Consensus size: 289
34529744 TTTTAAATTA
* * *
34529754 ATTGCATGTTGAATTTTAGGGATTTAAGGGTCTTGTTTTGTGTTTAGAGGAAGACGAAAATTTTG
1 ATTGCATGTTGAATTTTAGGGATTTAAGGGTCCTATTTTGTGTTTAGAGGAAGACGAAAACTTTG
* * *
34529819 TGAAATTTTCAGAACTATACAGTTGTATCACGACACCTAAGGCTGGATATCGCAATACCCTTGAT
66 TGAAATTTTCAGAACTATACAGTGGTATCACGACACCCAAGGCTGGATATCGCAATACCCTGGAT
* * *
34529884 AGTTTTGAAGGAAGGCCAAAACTTTTATGGATATCACAAAATCAGACCCTTGGTATCACGATATC
131 AGTTTCGAAGGAAGGCCAAAACTCTTATGGATATCACAAAATCAGACCCTTGGTATCACGATAGC
* * * * * *
34529949 AGACCCCTGGTATGGCGATACCAGACCCTTAGTATGGAGATACCAGACCCCTAGCATCGTAATAC
196 AGACACCTAGTATGGAGATACCAAACCCCTAGTATGGAGATACCAGACCCCTAGCATCGCAATAC
34530014 CGAA-CCCCTAGCATCGCGATACTAGACTC
261 C-AAGCCCCTAGCATCGCGATACTAGACTC
* *
34530043 ATTGCATGTTGAATTTTAGGGATTTAGGGGTCCTATTTTGTGTTTAGAGGAAGA-TAAAACTTT-
1 ATTGCATGTTGAATTTTAGGGATTTAAGGGTCCTATTTTGTGTTTAGAGGAAGACGAAAACTTTG
* * * * *
34530106 TGAAATTTTGATAACTATACAGTGGTATCATGACACCCAAGGGTGGATATCGCAATATCCTGGAT
66 TGAAATTTTCAGAACTATACAGTGGTATCACGACACCCAAGGCTGGATATCGCAATACCCTGGAT
* * * * * * * *
34530171 AGTTTCGAGGGGAGGCCAAAACTCTTATGGATATCGCGATA-CGGGACCTTTGGTATCGCGATAG
131 AGTTTCGAAGGAAGGCCAAAACTCTTATGGATATCACAAAATC-AGACCCTTGGTATCACGATAG
* * *
34530235 C-GAACACCTAGTATGGAGATACCAAACCCCTAGTATGGCGATACCAGACCCCTGGCATCGCGAT
195 CAG-ACACCTAGTATGGAGATACCAAACCCCTAGTATGGAGATACCAGACCCCTAGCATCGCAAT
34530299 ACCAAGCCCCTAGCATCGCGATACT
259 ACCAAGCCCCTAGCATCGCGATACT
34530324 GGACCTCTGG
Statistics
Matches: 245, Mismatches: 33, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
286 4 0.02
287 183 0.75
288 7 0.03
289 51 0.21
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (289 bp):
ATTGCATGTTGAATTTTAGGGATTTAAGGGTCCTATTTTGTGTTTAGAGGAAGACGAAAACTTTG
TGAAATTTTCAGAACTATACAGTGGTATCACGACACCCAAGGCTGGATATCGCAATACCCTGGAT
AGTTTCGAAGGAAGGCCAAAACTCTTATGGATATCACAAAATCAGACCCTTGGTATCACGATAGC
AGACACCTAGTATGGAGATACCAAACCCCTAGTATGGAGATACCAGACCCCTAGCATCGCAATAC
CAAGCCCCTAGCATCGCGATACTAGACTC
Found at i:34530301 original size:44 final size:44
Alignment explanation
Indices: 34530252--34530345 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
34530242 CTAGTATGGA
* *
34530252 GATACCAAACCCCTAGTATGGCGATACCAGACCCCTGGCATCGC
1 GATACCAAACCCCTAGCATCGCGATACCAGACCCCTGGCATCGC
* ** * *
34530296 GATACCAAGCCCCTAGCATCGCGATACTGGACCTCTGGTATCGC
1 GATACCAAACCCCTAGCATCGCGATACCAGACCCCTGGCATCGC
34530340 GATACC
1 GATACC
34530346 GGACCTCTGG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.26, C:0.35, G:0.21, T:0.18
Consensus pattern (44 bp):
GATACCAAACCCCTAGCATCGCGATACCAGACCCCTGGCATCGC
Found at i:34530338 original size:22 final size:22
Alignment explanation
Indices: 34530202--34530358 Score: 102
Period size: 22 Copynumber: 7.1 Consensus size: 22
34530192 CTCTTATGGA
* *
34530202 TATCGCGATACGGGACCTTTGG
1 TATCGCGATACCGGACCTCTGG
* * *
34530224 TATCGCGATAGCGAACAC-CTAG
1 TATCGCGATACCGGAC-CTCTGG
* * ** * *
34530246 TATGGAGATACCAAACCCCTAG
1 TATCGCGATACCGGACCTCTGG
* * *
34530268 TATGGCGATACCAGACCCCTGG
1 TATCGCGATACCGGACCTCTGG
* * * *
34530290 CATCGCGATACC-AAGCCCCTAG
1 TATCGCGATACCGGA-CCTCTGG
* *
34530312 CATCGCGATACTGGACCTCTGG
1 TATCGCGATACCGGACCTCTGG
34530334 TATCGCGATACCGGACCTCTGG
1 TATCGCGATACCGGACCTCTGG
34530356 TAT
1 TAT
34530359 GCGGTATCCC
Statistics
Matches: 109, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
21 2 0.02
22 105 0.96
23 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (22 bp):
TATCGCGATACCGGACCTCTGG
Found at i:34539655 original size:13 final size:13
Alignment explanation
Indices: 34539639--34539663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34539629 TTATACTCTT
34539639 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
34539652 TTTTTTCTTTTT
1 TTTTTTCTTTTT
34539664 TTGAGAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:34540251 original size:17 final size:17
Alignment explanation
Indices: 34540229--34540261 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34540219 TTTAATCCAA
34540229 ACAAATCAATAAAAATC
1 ACAAATCAATAAAAATC
*
34540246 ACAAATCGATAAAAAT
1 ACAAATCAATAAAAAT
34540262 TCATTCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.15, G:0.03, T:0.18
Consensus pattern (17 bp):
ACAAATCAATAAAAATC
Found at i:34542319 original size:31 final size:31
Alignment explanation
Indices: 34542284--34542347 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
34542274 GCAAAAAAAT
* * *
34542284 ACTAATAAAAATGAATAATAAT-AATAATAAA
1 ACTAAAAAAAATAAAGAAT-ATCAATAATAAA
34542315 ACTAAAAAAAATAAAGAATATCAATAATAAA
1 ACTAAAAAAAATAAAGAATATCAATAATAAA
34542346 AC
1 AC
34542348 AGAAAATAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22
Consensus pattern (31 bp):
ACTAAAAAAAATAAAGAATATCAATAATAAA
Found at i:34542431 original size:21 final size:21
Alignment explanation
Indices: 34542378--34542458 Score: 67
Period size: 21 Copynumber: 3.8 Consensus size: 21
34542368 AGAAATAGAT
* * *
34542378 AATAAACAACTAAAATAAAAA
1 AATAAATAAATAAAATAATAA
** *
34542399 AATAAAGGAATAAAATAATAG
1 AATAAATAAATAAAATAATAA
34542420 AATAAATAAATAAAGA-AGATAA
1 AATAAATAAATAAA-ATA-ATAA
34542442 AATAAAT-AATAATAATA
1 AATAAATAAATAA-AATA
34542459 GGAAAATGGG
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
21 35 0.73
22 13 0.27
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (21 bp):
AATAAATAAATAAAATAATAA
Found at i:34546089 original size:14 final size:14
Alignment explanation
Indices: 34546070--34546099 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
34546060 TGGTTGTTTT
34546070 TAATCTAAATTAAC
1 TAATCTAAATTAAC
*
34546084 TAATCTAATTTAAC
1 TAATCTAAATTAAC
34546098 TA
1 TA
34546100 TGAACACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:34549769 original size:23 final size:23
Alignment explanation
Indices: 34549743--34549790 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
34549733 AATCAGCTTC
34549743 TTTAATAC-ACCTATTAGGACACA
1 TTTAA-ACGACCTATTAGGACACA
* *
34549766 TTTAAACGACTTATTAGGATACA
1 TTTAAACGACCTATTAGGACACA
34549789 TT
1 TT
34549791 AATCATACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (23 bp):
TTTAAACGACCTATTAGGACACA
Found at i:34553940 original size:13 final size:13
Alignment explanation
Indices: 34553922--34553946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34553912 TATCACAGTA
34553922 AAAAAATATTTAT
1 AAAAAATATTTAT
34553935 AAAAAATATTTA
1 AAAAAATATTTA
34553947 ATATTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAAAATATTTAT
Found at i:34567446 original size:3 final size:3
Alignment explanation
Indices: 34567438--34567472 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
34567428 ATTTTAAACC
34567438 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
34567473 GGTTCTCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:34568288 original size:17 final size:19
Alignment explanation
Indices: 34568254--34568288 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
34568244 ACCAAAGATT
34568254 TAGATTTTAAACAATATTA
1 TAGATTTTAAACAATATTA
34568273 TAGA-TTTAAA-AATATT
1 TAGATTTTAAACAATATT
34568289 GATACAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (19 bp):
TAGATTTTAAACAATATTA
Found at i:34572590 original size:2 final size:2
Alignment explanation
Indices: 34572583--34572615 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
34572573 GGGTGTAGTA
34572583 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34572616 AACAAATGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:34583462 original size:57 final size:57
Alignment explanation
Indices: 34583342--34583460 Score: 156
Period size: 57 Copynumber: 2.1 Consensus size: 57
34583332 CTCATTTCTT
34583342 ATTTTCATTTCTATTTTGGAGAAAACCACATCTATTTCCAAATGATTTCATTCCTCC
1 ATTTTCATTTCTATTTTGGAGAAAACCACATCTATTTCCAAATGATTTCATTCCTCC
*
34583399 ATTTTCATTT-TCATTTTGGAGAAAACCTTA-ATC-ATTTCCAAAT-ATTTCCTATTTCTCC
1 ATTTTCATTTCT-ATTTTGGAGAAAACC--ACATCTATTTCCAAATGATTT-C-ATTCCTCC
34583457 ATTT
1 ATTT
34583461 CACCATTTCT
Statistics
Matches: 56, Mismatches: 1, Indels: 9
0.85 0.02 0.14
Matches are distributed among these distances:
56 5 0.09
57 36 0.64
58 14 0.25
59 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.45
Consensus pattern (57 bp):
ATTTTCATTTCTATTTTGGAGAAAACCACATCTATTTCCAAATGATTTCATTCCTCC
Found at i:34601435 original size:17 final size:17
Alignment explanation
Indices: 34601413--34601446 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34601403 ATCCAATGTT
34601413 CCTACATTTGATAAATC
1 CCTACATTTGATAAATC
34601430 CCTACATTTGATAAATC
1 CCTACATTTGATAAATC
34601447 AGCTGCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (17 bp):
CCTACATTTGATAAATC
Found at i:34605915 original size:18 final size:18
Alignment explanation
Indices: 34605881--34605916 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
34605871 CCTATATTAA
* *
34605881 ATTTTTTTATATTATTTT
1 ATTTTTTTACATAATTTT
34605899 ATTTTTTTACATAATTTT
1 ATTTTTTTACATAATTTT
34605917 TAAATATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTTTTTACATAATTTT
Found at i:34615190 original size:24 final size:24
Alignment explanation
Indices: 34615143--34615190 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
34615133 TCATTCTGTA
**
34615143 GCAAAGGATGAATTGAAGGTAAAT
1 GCAAAGGATGAATTGAAGAAAAAT
*
34615167 GCAAAGGATGAATTGACGAAAAAT
1 GCAAAGGATGAATTGAAGAAAAAT
34615191 TACTCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.48, C:0.06, G:0.27, T:0.19
Consensus pattern (24 bp):
GCAAAGGATGAATTGAAGAAAAAT
Found at i:34615264 original size:21 final size:21
Alignment explanation
Indices: 34615240--34615421 Score: 141
Period size: 21 Copynumber: 8.7 Consensus size: 21
34615230 CGTGTTTACT
* *
34615240 TTCCGTTTAGCTCTTACGAGC
1 TTCCGTTCAGCTCTTATGAGC
*
34615261 TTCCGTTTAGCTCTTATGAGC
1 TTCCGTTCAGCTCTTATGAGC
* * *
34615282 TTCCGTTCAACCCTTATGGGC
1 TTCCGTTCAGCTCTTATGAGC
* *
34615303 TTTCGTTCAGCTCTTTTGAGC
1 TTCCGTTCAGCTCTTATGAGC
** * * * *
34615324 TTTAGTTTAACCCTTATGAGT
1 TTCCGTTCAGCTCTTATGAGC
* * *
34615345 TTTCGTTCAGCTCTTACGAGT
1 TTCCGTTCAGCTCTTATGAGC
* * * *
34615366 TTCCGTTCAACTCTAATGGGT
1 TTCCGTTCAGCTCTTATGAGC
* *
34615387 TTCCGTTTAGCTCTCATGAGC
1 TTCCGTTCAGCTCTTATGAGC
*
34615408 TTCTGTTCAG-TCTT
1 TTCCGTTCAGCTCTT
34615422 CGGGCTTTTG
Statistics
Matches: 127, Mismatches: 34, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
20 3 0.02
21 124 0.98
ACGTcount: A:0.15, C:0.25, G:0.18, T:0.42
Consensus pattern (21 bp):
TTCCGTTCAGCTCTTATGAGC
Found at i:34615315 original size:42 final size:42
Alignment explanation
Indices: 34615259--34615416 Score: 165
Period size: 42 Copynumber: 3.8 Consensus size: 42
34615249 GCTCTTACGA
* *
34615259 GCTTCCGTTTAGCTCTTATGAGCTTCCGTTCAACCCTTATGG
1 GCTTTCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGG
* ** * *
34615301 GCTTTCGTTCAGCTCTTTTGAGCTTTAGTTTAACCCTTATGA
1 GCTTTCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGG
* * * * *
34615343 GTTTTCGTTCAGCTCTTACGAGTTTCCGTTCAACTCTAATGG
1 GCTTTCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGG
* * *
34615385 G-TTTCCGTTTAGCTCTCATGAGCTTCTGTTCA
1 GCTTT-CGTTCAGCTCTTATGAGCTTCCGTTCA
34615417 GTCTTCGGGC
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 3 0.03
42 90 0.97
ACGTcount: A:0.15, C:0.25, G:0.18, T:0.42
Consensus pattern (42 bp):
GCTTTCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGG
Found at i:34621508 original size:14 final size:14
Alignment explanation
Indices: 34621489--34621557 Score: 50
Period size: 14 Copynumber: 4.6 Consensus size: 14
34621479 AAAAAATGTA
34621489 AAAATAAATTTAAG
1 AAAATAAATTTAAG
* *
34621503 AAAATAAAATAAATGG
1 AAAATAAATTTAA--G
*
34621519 ATAAATAAAATATTTTA-
1 A-AAAT--AA-ATTTAAG
34621536 AAAATAAATTTAAG
1 AAAATAAATTTAAG
34621550 AAAATAAA
1 AAAATAAA
34621558 ATAAATGGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
13 5 0.12
14 21 0.50
16 6 0.14
17 5 0.12
19 2 0.05
20 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (14 bp):
AAAATAAATTTAAG
Found at i:34621510 original size:20 final size:19
Alignment explanation
Indices: 34621463--34621516 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
34621453 TATGAAAAAT
*
34621463 AAAATAAAAATAGA-TTAA
1 AAAATAAAAATAAATTTAA
34621481 AAAATGTAAAAATAAATTTAA
1 AAAA--TAAAAATAAATTTAA
34621502 GAAAAT-AAAATAAAT
1 -AAAATAAAAATAAAT
34621517 GGATAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 4 0.13
19 9 0.29
20 10 0.32
21 4 0.13
22 4 0.13
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (19 bp):
AAAATAAAAATAAATTTAA
Found at i:34621546 original size:47 final size:47
Alignment explanation
Indices: 34621487--34621581 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
34621477 TTAAAAAATG
34621487 TAAAAATAAATTTAAGAAAATAAAATAAATGGATAAATAAAATATTT
1 TAAAAATAAATTTAAGAAAATAAAATAAATGGATAAATAAAATATTT
34621534 TAAAAATAAATTTAAGAAAATAAAATAAATGGATAAATAAAATATTT
1 TAAAAATAAATTTAAGAAAATAAAATAAATGGATAAATAAAATATTT
34621581 T
1 T
34621582 TTTGCTTAGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (47 bp):
TAAAAATAAATTTAAGAAAATAAAATAAATGGATAAATAAAATATTT
Found at i:34626463 original size:20 final size:19
Alignment explanation
Indices: 34626415--34626468 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
34626405 TACGAAAAAT
*
34626415 AAAATAAAAATAAA-TTCG
1 AAAATAAAAATAAATTTAG
34626433 AAAATGCAAAAATAAATTTAAG
1 AAAAT--AAAAATAAATTT-AG
34626455 AAAAT-AAAATAAAT
1 AAAATAAAAATAAAT
34626469 GGATAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.16
19 9 0.29
20 9 0.29
21 2 0.06
22 6 0.19
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.22
Consensus pattern (19 bp):
AAAATAAAAATAAATTTAG
Found at i:34628660 original size:17 final size:17
Alignment explanation
Indices: 34628634--34628666 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34628624 CTTTTTTTAA
*
34628634 TTAAATAACCAAAATAT
1 TTAAAAAACCAAAATAT
34628651 TTAAAAAACCAAAATA
1 TTAAAAAACCAAAATA
34628667 AAGACTTACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (17 bp):
TTAAAAAACCAAAATAT
Found at i:34633183 original size:4 final size:4
Alignment explanation
Indices: 34633174--34633204 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
34633164 TTGGTCAAAA
34633174 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
34633205 AAGCGTTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:34634545 original size:14 final size:14
Alignment explanation
Indices: 34634518--34634615 Score: 54
Period size: 13 Copynumber: 7.5 Consensus size: 14
34634508 ATAATGGTAA
34634518 TAAAATATTTAATAT
1 TAAAATA-TTAATAT
34634533 TAAAATATTAATAT
1 TAAAATATTAATAT
*
34634547 T-GAATATT--T-T
1 TAAAATATTAATAT
*
34634557 T--AATAAT-ATAT
1 TAAAATATTAATAT
34634568 TAAGAATATT-AT-T
1 TAA-AATATTAATAT
* *
34634581 TAAAATTATTATTTT
1 TAAAA-TATTAATAT
*
34634596 TAAAAT-TTATTAT
1 TAAAATATTAATAT
34634609 TAAAATA
1 TAAAATA
34634616 AATTGAAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
9 5 0.07
10 3 0.04
11 3 0.04
12 2 0.03
13 26 0.38
14 17 0.25
15 13 0.19
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
TAAAATATTAATAT
Found at i:34634575 original size:23 final size:22
Alignment explanation
Indices: 34634548--34634591 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
34634538 TATTAATATT
34634548 GAATATT-TTTAATAATATATTAA
1 GAATATTATTTAA-AAT-TATTAA
34634571 GAATATTATTTAAAATTATTA
1 GAATATTATTTAAAATTATTA
34634592 TTTTTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 10 0.50
24 5 0.25
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (22 bp):
GAATATTATTTAAAATTATTAA
Done.