Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 115 of 187
Found at i:34634605 original size:16 final size:16
Alignment explanation
Indices: 34634574--34634610 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
34634564 ATATTAAGAA
34634574 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
34634590 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
34634606 TATTA
1 TATTA
34634611 AAATAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:34634847 original size:19 final size:20
Alignment explanation
Indices: 34634800--34634848 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
34634790 TAAAAAGATT
* *
34634800 TATTTTCTGTTGACCTGTAAG
1 TATTTTCTGTTGACC-GAAAC
34634821 TCATTTTCTGTTGACC-AAAC
1 T-ATTTTCTGTTGACCGAAAC
34634841 TATTTTCT
1 TATTTTCT
34634849 ATTAAACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 7 0.28
20 3 0.12
21 1 0.04
22 14 0.56
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.49
Consensus pattern (20 bp):
TATTTTCTGTTGACCGAAAC
Found at i:34636629 original size:16 final size:16
Alignment explanation
Indices: 34636608--34636648 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
34636598 TGTCAAGTTT
34636608 GAGAGGTACTTGATGG
1 GAGAGGTACTTGATGG
34636624 GAGAGGTACTTGATGG
1 GAGAGGTACTTGATGG
*
34636640 GGGAGGTAC
1 GAGAGGTAC
34636649 GATGACAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.24, C:0.07, G:0.46, T:0.22
Consensus pattern (16 bp):
GAGAGGTACTTGATGG
Found at i:34637364 original size:24 final size:24
Alignment explanation
Indices: 34637332--34637379 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
34637322 ATGAAGAATC
34637332 AATTGTATTTCAAAATTGAGCAGT
1 AATTGTATTTCAAAATTGAGCAGT
34637356 AATTGTATTTCAAAATTGAGCAGT
1 AATTGTATTTCAAAATTGAGCAGT
34637380 TCTTACTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (24 bp):
AATTGTATTTCAAAATTGAGCAGT
Found at i:34637930 original size:9 final size:9
Alignment explanation
Indices: 34637904--34637933 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
34637894 GAGAAAGTGA
*
34637904 TGATGATGA
1 TGATGATGG
34637913 TGATGATGG
1 TGATGATGG
34637922 TGATGATGG
1 TGATGATGG
34637931 TGA
1 TGA
34637934 ATCAAACTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.40, T:0.33
Consensus pattern (9 bp):
TGATGATGG
Found at i:34638328 original size:31 final size:26
Alignment explanation
Indices: 34638292--34638359 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 26
34638282 ATATTTAAAT
*
34638292 ATTTAAAATATAGTTTATATATTCTAATTAA
1 ATTTAAAATATA-ATTA-ATA-T-TAATT-A
34638323 ATTTAATAA-ATAATTAATATTAATTA
1 ATTTAA-AATATAATTAATATTAATTA
34638349 ATTTAAAATAT
1 ATTTAAAATAT
34638360 TTAAAATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
25 2 0.06
26 9 0.26
27 5 0.15
28 1 0.03
29 3 0.09
30 3 0.09
31 9 0.26
32 2 0.06
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (26 bp):
ATTTAAAATATAATTAATATTAATTA
Found at i:34641338 original size:24 final size:24
Alignment explanation
Indices: 34641311--34641373 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
34641301 TTATTAACAT
* *
34641311 TGTTCGTGAACGTGTTCAATTATA
1 TGTTCATGAACATGTTCAATTATA
*
34641335 TGTTCATGAACATGTTCGATTA-A
1 TGTTCATGAACATGTTCAATTATA
*
34641358 -GTTAAATGAACATGTT
1 TGTT-CATGAACATGTT
34641374 TGTGAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 3 0.09
23 12 0.35
24 19 0.56
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (24 bp):
TGTTCATGAACATGTTCAATTATA
Found at i:34643813 original size:3 final size:3
Alignment explanation
Indices: 34643805--34643861 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
34643795 GTTGTTTCGC
34643805 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
34643853 CTT CTT CTT
1 CTT CTT CTT
34643862 TTATTTTCGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:34644460 original size:16 final size:16
Alignment explanation
Indices: 34644439--34644469 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34644429 AATTAATTTA
*
34644439 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
34644455 AATTAAATAATTTTC
1 AATTAAATAATTTTC
34644470 TCAGCCCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:34646421 original size:16 final size:16
Alignment explanation
Indices: 34646400--34646431 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34646390 TATAGATACA
*
34646400 ATTTTTATTTTTATTT
1 ATTTTTAATTTTATTT
34646416 ATTTTTAATTTTATTT
1 ATTTTTAATTTTATTT
34646432 TACTTTACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
ATTTTTAATTTTATTT
Found at i:34652580 original size:28 final size:28
Alignment explanation
Indices: 34652522--34652604 Score: 71
Period size: 28 Copynumber: 3.0 Consensus size: 28
34652512 TTAGATGGCA
** * *
34652522 CCACAAAGGCATTCATT-TTTAGAAATAG
1 CCACAAAGGC-TTCATTAACTAGAGATTG
* *
34652550 CCATAAAGGCTTTC-TTATCTAGAGATTG
1 CCACAAAGGC-TTCATTAACTAGAGATTG
*
34652578 CCACAAATGCTTCATTAACTAGAGATT
1 CCACAAAGGCTTCATTAACTAGAGATT
34652605 ACAACAAATG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 5 0.11
28 40 0.89
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (28 bp):
CCACAAAGGCTTCATTAACTAGAGATTG
Found at i:34652692 original size:27 final size:28
Alignment explanation
Indices: 34652628--34652695 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 28
34652618 CCTTTTCATT
* *
34652628 AAGTACTCACCACAAAGGCTTTCCTTTCA
1 AAGT-CTCGCCACAAAGGCTTTCCTTTAA
*
34652657 GAGTCTCGCCACAAAGG-TTTCCTTTAA
1 AAGTCTCGCCACAAAGGCTTTCCTTTAA
34652684 AAGGT-TCGCCAC
1 AA-GTCTCGCCAC
34652696 GAGGGCTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
27 17 0.50
28 14 0.41
29 3 0.09
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
AAGTCTCGCCACAAAGGCTTTCCTTTAA
Found at i:34652773 original size:56 final size:55
Alignment explanation
Indices: 34652669--34652784 Score: 135
Period size: 56 Copynumber: 2.1 Consensus size: 55
34652659 GTCTCGCCAC
** * *
34652669 AAAGGTTTCCTTTAAAAGGTTCGCCACGAGGGCTTACCCTCTACAGTTTTACCAT
1 AAAGGTTTCCTTTAAAAGGTTCGCCACGAAAGCTTACCCTCCAAAGTTTTACCAT
* * * *
34652724 AAAGGTTGTCCTTTAACATGTTCGCCAC-AAAGCTTACCTTTCCAAAGTTTTCCCAT
1 AAAGGTT-TCCTTTAAAAGGTTCGCCACGAAAGCTTACC-CTCCAAAGTTTTACCAT
34652780 AAAGG
1 AAAGG
34652785 CATTTCTTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
55 15 0.29
56 36 0.71
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (55 bp):
AAAGGTTTCCTTTAAAAGGTTCGCCACGAAAGCTTACCCTCCAAAGTTTTACCAT
Found at i:34652918 original size:26 final size:26
Alignment explanation
Indices: 34652878--34652937 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
34652868 AAATAATTGG
*
34652878 GATTTGCCTAGACTCACATTTCATGA
1 GATTTGCCTAGACTCACATTTCATAA
*
34652904 GATTTGCCTATACTCACATTTCATAA
1 GATTTGCCTAGACTCACATTTCATAA
*
34652930 GGTTTGCC
1 GATTTGCC
34652938 CTTCATTGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (26 bp):
GATTTGCCTAGACTCACATTTCATAA
Found at i:34661243 original size:210 final size:210
Alignment explanation
Indices: 34660881--34661268 Score: 560
Period size: 210 Copynumber: 1.8 Consensus size: 210
34660871 CAAACCACAT
* ** * *
34660881 TTTGTTCTCTTAGGATATCCCACAAACATGCACAATTCTATTTGTGAATTCAACTTCCTCACATA
1 TTTGTTCCCTTAGGATATCCCACAAACATGCACAATTCTATCCGTAAATCCAACTTCCTCACATA
* * * ** * *
34660946 TTTATCCAATATGTGGGTTGGTTATCTACCATAGCTGATCATGTTATTTGTATCCCTTTCCGCAT
66 TTTATCCAATACGTGAGTTGGTCATCTACCATAGCCAATCATGTTATCTGTATCCCTTTCCACAT
* * * *
34661011 AATTTTATCTTGTTTAATAGTAAAATCAAGTCCTTTTAATAATAATTTCTGTTTCTAAATTTTAA
131 AAATTTAGCTTGTTTAATAGTAAAATAAAGTCATTTTAATAATAATTTCTGTTTCTAAATTTTAA
34661076 CTACTCAAAACGTAC
196 CTACTCAAAACGTAC
* *
34661091 TTTGTTCCCTTAGGATATCCCACAAACATGCACAATTTTATCCGTAAATCCAACTTCCTCACATC
1 TTTGTTCCCTTAGGATATCCCACAAACATGCACAATTCTATCCGTAAATCCAACTTCCTCACATA
* * * *
34661156 TTTCTCCAATACGTGAGTTGGTCATCTGCCATAGCCAATCATGTTATCTGTATCCCTTTTCATAT
66 TTTATCCAATACGTGAGTTGGTCATCTACCATAGCCAATCATGTTATCTGTATCCCTTTCCACAT
* *
34661221 AAATTTAGCTTGTTTAATAGTAAAATAAAGTTATTTTAATGATAATTT
131 AAATTTAGCTTGTTTAATAGTAAAATAAAGTCATTTTAATAATAATTT
34661269 ATGTATTTAC
Statistics
Matches: 154, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
210 154 1.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (210 bp):
TTTGTTCCCTTAGGATATCCCACAAACATGCACAATTCTATCCGTAAATCCAACTTCCTCACATA
TTTATCCAATACGTGAGTTGGTCATCTACCATAGCCAATCATGTTATCTGTATCCCTTTCCACAT
AAATTTAGCTTGTTTAATAGTAAAATAAAGTCATTTTAATAATAATTTCTGTTTCTAAATTTTAA
CTACTCAAAACGTAC
Found at i:34661523 original size:20 final size:21
Alignment explanation
Indices: 34661493--34661581 Score: 76
Period size: 20 Copynumber: 4.4 Consensus size: 21
34661483 TGCCGCAATT
* *
34661493 TTAGAATTGAATGTCGCGACA
1 TTAGGATTGAATGTTGCGACA
*
34661514 TT-GGATTGAATGTTGC-AAA
1 TTAGGATTGAATGTTGCGACA
* *
34661533 TTAGAATTGAATGTAGCGACA
1 TTAGGATTGAATGTTGCGACA
* ** *
34661554 TTGGGGCTGAATGTTGCAACA
1 TTAGGATTGAATGTTGCGACA
34661575 TT-GGATT
1 TTAGGATT
34661582 TTTATGTCGC
Statistics
Matches: 52, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
19 4 0.08
20 27 0.52
21 21 0.40
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (21 bp):
TTAGGATTGAATGTTGCGACA
Found at i:34661552 original size:40 final size:41
Alignment explanation
Indices: 34661493--34661572 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 41
34661483 TGCCGCAATT
* *
34661493 TTAGAATTGAATGTCGCGACATT-GGATTGAATGTTGCAAA
1 TTAGAATTGAATGTAGCGACATTGGGACTGAATGTTGCAAA
*
34661533 TTAGAATTGAATGTAGCGACATTGGGGCTGAATGTTGCAA
1 TTAGAATTGAATGTAGCGACATTGGGACTGAATGTTGCAA
34661573 CATTGGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 22 0.61
41 14 0.39
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (41 bp):
TTAGAATTGAATGTAGCGACATTGGGACTGAATGTTGCAAA
Found at i:34663294 original size:931 final size:931
Alignment explanation
Indices: 34661492--34664288 Score: 5315
Period size: 931 Copynumber: 3.0 Consensus size: 931
34661482 ATGCCGCAAT
34661492 TTTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTG
1 TTTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTG
* * * *
34661557 GGGCTGAATGTTGCAACATTGGATTTTTATGTCGCGATATTAACTTTGTGCAACGAAGATTTCCT
66 GGGCTGAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTACAACGATGATTTCCT
*
34661622 TCATGCATCGATTCTGATTTCAAGGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTTATTGAA
131 TCATGCATCGATTCTGATTTTAAGGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTTATTGAA
*
34661687 ATTATAAATGAAGGGGCAATTTAGTCTTTTGACTTTTATCTATATAAAGAACATTATAATCAAAT
196 ATTATAAATGAAGGGGCAATTTAGTCTTTTGACTTTTATCTATATAAACAACATTATAATCAAAT
* *
34661752 TTGATGGGACTTTTACACAAATTGCACTTAATCTTTTAGAAAATTAGGTTTTTACTTAGATGTTT
261 TTGACGGGACTTTTACACAAATTGCACTTAATCTTTCAGAAAATTAGGTTTTTACTTAGATGTTT
*
34661817 TCTTAATAGGAGATTCTATTTAGAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCA
326 TCTTAATAGGAGATTCTATTTAAAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCA
*
34661882 TTCTCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
391 TTCGCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
*
34661947 AATTAACTAAATGTTTGTATGAATAGGAGAATAAAACCTATGCTTTCATAAATATCTTGCGTGAT
456 AATTAACTGAATGTTTGTATGAATAGGAGAATAAAACCTATGCTTTCATAAATATCTTGCGTGAT
34662012 TGTTTGAGTAACTAATTATTTCATTGAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTT
521 TGTTTGAGTAACTAATTATTTCATTGAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTT
* *
34662077 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGCAGAATAACTAGATAGATGAGACCGAAA
586 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAA
34662142 GGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCAT
651 GGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCAT
34662207 ATGCTTAGTGGAGACCAAAAGGGTATCTTAGGTAGTAACTCTTAGAGAGGATGACACCGAGAGGG
716 ATGCTTAGTGGAGACCAAAAGGGTATCTTAGGTAGTAACTCTTAGAGAGGATGACACCGAGAGGG
*
34662272 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGCTTTCATTGATAATTAGCA
781 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
*
34662337 ATTCAACCAACTTTAGGATAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
846 ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
*
34662402 TAACCTTTAGTTTAATTTTAA
911 TAACCTTCAGTTTAATTTTAA
*
34662423 TTTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAAAATTGAATGTAGCGACATTG
1 TTTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTG
34662488 GGGCTGAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTACAACGATGATTTCCT
66 GGGCTGAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTACAACGATGATTTCCT
*
34662553 TCATGCATCGATTTTGATTTTAAGGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTTATTGAA
131 TCATGCATCGATTCTGATTTTAAGGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTTATTGAA
*
34662618 ATTATAAATGAAGGGGCAATTTAGTCTTTTGACTGTTATCTATATAAACAACATTATAATCAAAT
196 ATTATAAATGAAGGGGCAATTTAGTCTTTTGACTTTTATCTATATAAACAACATTATAATCAAAT
34662683 TTGACGGGACTTTTACACAAATTGCACTTAATCTTTCAGAAAATTAGGTTTTTACTTAGATGTTT
261 TTGACGGGACTTTTACACAAATTGCACTTAATCTTTCAGAAAATTAGGTTTTTACTTAGATGTTT
34662748 TCTTAATAGGAGATTCTATTTAAAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCA
326 TCTTAATAGGAGATTCTATTTAAAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCA
34662813 TTCGCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
391 TTCGCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
34662878 AATTAACTGAATGTTTGTATGAATAGGAGAATAAAACCTATGCTTTCATAAATATCTTGCGTGAT
456 AATTAACTGAATGTTTGTATGAATAGGAGAATAAAACCTATGCTTTCATAAATATCTTGCGTGAT
34662943 TGTTTGAGTAACTAATTATTTCATTGAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTT
521 TGTTTGAGTAACTAATTATTTCATTGAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTT
34663008 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAA
586 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAA
* *
34663073 GGGTGCTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGTGGTGAGACCGAAAGAGTATGCAT
651 GGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCAT
*
34663138 ATGCTTAGTGGAGACCAAAAGGGTATCTTACGTAGTAACTCTTAGAGAGGATGACACCGAGAGGG
716 ATGCTTAGTGGAGACCAAAAGGGTATCTTAGGTAGTAACTCTTAGAGAGGATGACACCGAGAGGG
34663203 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
781 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
*
34663268 ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAAGAAGTTTCAATAGTCT
846 ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
34663333 TAACCTTCAGTTTAATTTTAA
911 TAACCTTCAGTTTAATTTTAA
*
34663354 TTTAGAATTGAATGTCGCGACATTGGATTGAATGTTTCAAATTAGAATTGAATGTAGCGACATTG
1 TTTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTG
34663419 GGGCTGAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTACAACGATGATTTCCT
66 GGGCTGAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTACAACGATGATTTCCT
* *
34663484 TCATGCATCGATTCTGATTTTAAAGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTAATTGAA
131 TCATGCATCGATTCTGATTTTAAGGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTTATTGAA
*
34663549 ATTATAAATGAAGGGGAAATTTAGTCTTTTGACTTTTATCTATATAAACAACATTATAATCAAAT
196 ATTATAAATGAAGGGGCAATTTAGTCTTTTGACTTTTATCTATATAAACAACATTATAATCAAAT
* *
34663614 TTGAGGGGACTTTTACACAAATTGTACTTAATCTTTCAGAAAATTAGGTTTTTACTTAGATGTTT
261 TTGACGGGACTTTTACACAAATTGCACTTAATCTTTCAGAAAATTAGGTTTTTACTTAGATGTTT
34663679 TCTTAATAGGAGATTCTATTTAAAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCA
326 TCTTAATAGGAGATTCTATTTAAAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCA
34663744 TTCGCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
391 TTCGCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
34663809 AATTAACTGAATGTTTGTATGAATAGGAGAATAAAACCTATGCTTTCATAAATATCTTGCGTGAT
456 AATTAACTGAATGTTTGTATGAATAGGAGAATAAAACCTATGCTTTCATAAATATCTTGCGTGAT
34663874 TGTTTGAGTAACTAATTATTTCATTGAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTT
521 TGTTTGAGTAACTAATTATTTCATTGAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTT
*
34663939 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGTGACCGAAA
586 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAA
*
34664004 AGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCAT
651 GGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCAT
34664069 ATGCTTAGTGGAGACCAAAAGGGTATCTTAGGTAGTAACTCTTAGAGAGGATGACACCGAGAGGG
716 ATGCTTAGTGGAGACCAAAAGGGTATCTTAGGTAGTAACTCTTAGAGAGGATGACACCGAGAGGG
34664134 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
781 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
34664199 ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
846 ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
34664264 TAACCTTCAGTTTAATTTTAA
911 TAACCTTCAGTTTAATTTTAA
34664285 TTTA
1 TTTA
34664289 ATTAGTTTTA
Statistics
Matches: 1828, Mismatches: 38, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
931 1828 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (931 bp):
TTTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTG
GGGCTGAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTACAACGATGATTTCCT
TCATGCATCGATTCTGATTTTAAGGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTTATTGAA
ATTATAAATGAAGGGGCAATTTAGTCTTTTGACTTTTATCTATATAAACAACATTATAATCAAAT
TTGACGGGACTTTTACACAAATTGCACTTAATCTTTCAGAAAATTAGGTTTTTACTTAGATGTTT
TCTTAATAGGAGATTCTATTTAAAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCA
TTCGCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
AATTAACTGAATGTTTGTATGAATAGGAGAATAAAACCTATGCTTTCATAAATATCTTGCGTGAT
TGTTTGAGTAACTAATTATTTCATTGAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTT
GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAA
GGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCAT
ATGCTTAGTGGAGACCAAAAGGGTATCTTAGGTAGTAACTCTTAGAGAGGATGACACCGAGAGGG
CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
TAACCTTCAGTTTAATTTTAA
Found at i:34663459 original size:42 final size:41
Alignment explanation
Indices: 34663355--34663460 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 41
34663345 TAATTTTAAT
* *
34663355 TTAGAATTGAATGTCGCGACATT-GGATTGAATGTTTCAAA
1 TTAGAATTGAATGTCGCGACATTGGGACTGAATGTTGCAAA
* *
34663395 TTAGAATTGAATGTAGCGACATTGGGGCTGAATGTTGCAACA
1 TTAGAATTGAATGTCGCGACATTGGGACTGAATGTTGCAA-A
* * **
34663437 TTGGATTTTTATGTCGCGACATTG
1 TTAGAATTGAATGTCGCGACATTG
34663461 ACTTTGTACA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 22 0.40
41 13 0.24
42 20 0.36
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.35
Consensus pattern (41 bp):
TTAGAATTGAATGTCGCGACATTGGGACTGAATGTTGCAAA
Found at i:34666083 original size:37 final size:37
Alignment explanation
Indices: 34666041--34666113 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
34666031 GTCATACATA
34666041 GTATGAATAAGTCCAATTCCAACATTGTCATATTATG
1 GTATGAATAAGTCCAATTCCAACATTGTCATATTATG
*
34666078 GTATGAATAAGTCCAATTCCAATATTGTCATATTAT
1 GTATGAATAAGTCCAATTCCAACATTGTCATATTAT
34666114 CACAATGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (37 bp):
GTATGAATAAGTCCAATTCCAACATTGTCATATTATG
Found at i:34679550 original size:12 final size:10
Alignment explanation
Indices: 34679521--34679560 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
34679511 ATTGACATGT
34679521 TTAATTTTAA
1 TTAATTTTAA
34679531 TTAATTTTATA
1 TTAATTTTA-A
*
34679542 TTAAATTTTGA
1 TT-AATTTTAA
34679553 TTAATTTT
1 TTAATTTT
34679561 GATCATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 15 0.56
11 6 0.22
12 6 0.22
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:34683713 original size:29 final size:29
Alignment explanation
Indices: 34683680--34683736 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
34683670 GAATTATTTG
*
34683680 TAAAATTTAGTTGT-TCTTTTTGTAAATAC
1 TAAAA-TTAGCTGTCTCTTTTTGTAAATAC
34683709 TAAAATTAGCTGTCTCTTTTTGTAAATA
1 TAAAATTAGCTGTCTCTTTTTGTAAATA
34683737 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.49
Consensus pattern (29 bp):
TAAAATTAGCTGTCTCTTTTTGTAAATAC
Found at i:34695338 original size:18 final size:18
Alignment explanation
Indices: 34695306--34695360 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 18
34695296 ATTTTATATT
34695306 TAAAATCAT-TAAAAATTA
1 TAAAA-CATATAAAAATTA
*
34695324 TAAAA-ATATAGAAAATCA
1 TAAAACATATA-AAAATTA
34695342 TAAAACTATATAAAAATTA
1 TAAAAC-ATATAAAAATTA
34695361 AAATTTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
16 2 0.06
17 2 0.06
18 16 0.52
19 6 0.19
20 5 0.16
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAAACATATAAAAATTA
Found at i:34695469 original size:21 final size:20
Alignment explanation
Indices: 34695432--34695488 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
34695422 ATTATAACTG
*
34695432 AAAAAATA-TATAAATTGTAA
1 AAAAAATATTAAAAATTG-AA
34695452 AAAATAAT-TTAAAAATTGAA
1 AAAA-AATATTAAAAATTGAA
*
34695472 AGAAAATATTAAAAATT
1 AAAAAATATTAAAAATT
34695489 TTATATTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 3 0.09
20 18 0.56
21 11 0.34
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAAAATATTAAAAATTGAA
Found at i:34695485 original size:20 final size:19
Alignment explanation
Indices: 34695414--34695488 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 19
34695404 GAAATTTATA
* *
34695414 AAAAAAATATT-ATAACTG
1 AAAAAAATATTAAAAATTG
*
34695432 -AAAAAATA-TATAAATTG
1 AAAAAAATATTAAAAATTG
*
34695449 TAAAAAATAATTTAAAAATTG
1 AAAAAAAT-A-TTAAAAATTG
34695470 AAAGAAAATATTAAAAATT
1 AAA-AAAATATTAAAAATT
34695489 TTATATTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
16 1 0.02
17 12 0.26
18 7 0.15
19 1 0.02
20 9 0.20
21 11 0.24
22 5 0.11
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (19 bp):
AAAAAAATATTAAAAATTG
Found at i:34696009 original size:19 final size:20
Alignment explanation
Indices: 34695977--34696023 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
34695967 CGCTTTTCTG
*
34695977 TATTTTTATAATAT-TTATAA
1 TATTTTTCTAATATCTTA-AA
34695997 TATTTTTCT-ATATCTTAAA
1 TATTTTTCTAATATCTTAAA
*
34696016 CATTTTTC
1 TATTTTTC
34696024 ATAAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTTTCTAATATCTTAAA
Found at i:34696124 original size:20 final size:20
Alignment explanation
Indices: 34696083--34696124 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
34696073 ATGTTAATAA
**
34696083 TTTTTTAATATTTTCTGTAT
1 TTTTTTAATATTTTCTAAAT
34696103 TTTTTTAATAATTTT-TAAAT
1 TTTTTTAAT-ATTTTCTAAAT
34696123 TT
1 TT
34696125 ATTATCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTTTAATATTTTCTAAAT
Found at i:34699304 original size:20 final size:20
Alignment explanation
Indices: 34699281--34699332 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
34699271 TATATGATAT
*
34699281 CAAAATTTTTAATGC-GGTAC
1 CAAAATTTTTAAT-CAAGTAC
**
34699301 C-AAATTCCTAATCAAGTAC
1 CAAAATTTTTAATCAAGTAC
34699320 CAAAATTTTTAAT
1 CAAAATTTTTAAT
34699333 AAAATTTCTC
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 10 0.40
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (20 bp):
CAAAATTTTTAATCAAGTAC
Found at i:34699808 original size:26 final size:26
Alignment explanation
Indices: 34699730--34699809 Score: 72
Period size: 26 Copynumber: 2.9 Consensus size: 26
34699720 ATACGTATTT
* *
34699730 AATTATTT-ATATTTAGTCATATAATA
1 AATTATTTAATATTTAAT-ATTTAATA
* *
34699756 AATTATTAATATAATTTATTATTTTTAATA
1 AATTATTTA-AT-ATTTA--ATATTTAATA
34699786 AATTATTTAATATTTAATATTTAA
1 AATTATTTAATATTTAATATTTAA
34699810 ATTTTATTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
26 14 0.33
28 7 0.16
29 7 0.16
30 14 0.33
31 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (26 bp):
AATTATTTAATATTTAATATTTAATA
Found at i:34699938 original size:15 final size:15
Alignment explanation
Indices: 34699876--34699940 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
34699866 ATTATTGAAA
*
34699876 ATATTAATAGT-AAT
1 ATATTAATAATAAAT
* *
34699890 ATTTTAATACTAAAT
1 ATATTAATAATAAAT
*
34699905 ATTTATTACAATTATAAAT
1 A--TATT--AATAATAAAT
34699924 ATATTAATAATAAAT
1 ATATTAATAATAAAT
34699939 AT
1 AT
34699941 TTTGTAGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 9 0.22
15 15 0.38
17 7 0.17
19 9 0.22
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (15 bp):
ATATTAATAATAAAT
Found at i:34706889 original size:37 final size:37
Alignment explanation
Indices: 34706833--34706909 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
34706823 TAAATTGTAT
34706833 TTTTTTAAAATAAACTATTAAAA-AATATGATTTTTTA
1 TTTTTTAAAATAAACTATTAAAATAATATG-TTTTTTA
* **
34706870 TTTTTT-AAATATAATTATTAAAATTTTATGTTTTTTA
1 TTTTTTAAAATA-AACTATTAAAATAATATGTTTTTTA
34706907 TTT
1 TTT
34706910 AAATATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 5 0.14
37 26 0.74
38 4 0.11
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (37 bp):
TTTTTTAAAATAAACTATTAAAATAATATGTTTTTTA
Found at i:34707521 original size:10 final size:10
Alignment explanation
Indices: 34707508--34707565 Score: 63
Period size: 10 Copynumber: 6.2 Consensus size: 10
34707498 TTTTTTTTTA
34707508 ATTTTAAAAT
1 ATTTTAAAAT
*
34707518 ATTTT--TA-
1 ATTTTAAAAT
34707525 ATTTT-A-AT
1 ATTTTAAAAT
34707533 ATTTTAAAAT
1 ATTTTAAAAT
34707543 ACTTTTAAAAT
1 A-TTTTAAAAT
34707554 ATTTTAAAAT
1 ATTTTAAAAT
34707564 AT
1 AT
34707566 ATATTTTTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
7 6 0.14
8 6 0.14
9 1 0.02
10 19 0.45
11 10 0.24
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:34707536 original size:25 final size:25
Alignment explanation
Indices: 34707508--34707595 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 25
34707498 TTTTTTTTTA
34707508 ATTTTAAAATATTTTTAATTTTAAT
1 ATTTTAAAATATTTTTAATTTTAAT
*
34707533 ATTTTAAAATACTTTTAA----AAT
1 ATTTTAAAATATTTTTAATTTTAAT
*
34707554 ATTTTAAAATATATATTTTTAATTTTTA-
1 ATTTT--AA-A-ATATTTTTAATTTTAAT
34707582 ATTTT-AAATATTTT
1 ATTTTAAAATATTTT
34707596 AAAATACTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
21 8 0.15
23 9 0.17
24 2 0.04
25 27 0.52
28 5 0.10
29 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTTAAAATATTTTTAATTTTAAT
Found at i:34713548 original size:33 final size:34
Alignment explanation
Indices: 34713506--34713573 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
34713496 GGTTAGTACC
34713506 ATATTTT-CCCCCAATTGCACCTCACTGGCATTA
1 ATATTTTCCCCCCAATTGCACCTCACTGGCATTA
**
34713539 ATATTTTCCCCCCAATTGCACCTCGTTGGCATTA
1 ATATTTTCCCCCCAATTGCACCTCACTGGCATTA
34713573 A
1 A
34713574 AAGCCAAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 7 0.22
34 25 0.78
ACGTcount: A:0.24, C:0.32, G:0.10, T:0.34
Consensus pattern (34 bp):
ATATTTTCCCCCCAATTGCACCTCACTGGCATTA
Found at i:34714933 original size:26 final size:25
Alignment explanation
Indices: 34714883--34714933 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
34714873 AAGAATGAAT
* *
34714883 AAAAAATAAATAAATGTGAATGAAA
1 AAAAAATAAAGAAATGTGAAAGAAA
34714908 AAAAAATTAAAGAACATG-GAAAGAAA
1 AAAAAA-TAAAGAA-ATGTGAAAGAAA
34714934 TGGGAAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 6 0.27
26 13 0.59
27 3 0.14
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.16
Consensus pattern (25 bp):
AAAAAATAAAGAAATGTGAAAGAAA
Found at i:34720467 original size:50 final size:50
Alignment explanation
Indices: 34720403--34720505 Score: 179
Period size: 50 Copynumber: 2.1 Consensus size: 50
34720393 TTGAAATTAA
* * *
34720403 GAGAGGTCCTATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCGAGAT
34720453 GAGAGGTCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCGAGAT
34720503 GAG
1 GAG
34720506 GTNNNNNNNN
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.21
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:34722677 original size:50 final size:50
Alignment explanation
Indices: 34722602--34722784 Score: 253
Period size: 50 Copynumber: 3.7 Consensus size: 50
34722592 ACAGGAAACA
** *
34722602 TCCCATGTAAGACTGTGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
*
34722652 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT--GAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * **
34722700 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* *
34722750 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
34722785 TAGTACAGGA
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
48 44 0.37
50 75 0.63
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:34722779 original size:98 final size:98
Alignment explanation
Indices: 34722602--34722784 Score: 267
Period size: 98 Copynumber: 1.9 Consensus size: 98
34722592 ACAGGAAACA
** * * **
34722602 TCCCATGTAAGACTGTGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCA
* *
34722667 TGTCTGGGACATGGCGTTGGCACCGAGATGAGG
66 TATCTGGGACATGGCATTGGCACCGAGATGAGG
* *
34722700 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCA
*
34722765 TATCTGGGATATGGCATTGG
66 TATCTGGGACATGGCATTGG
34722785 TAGTACAGGA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
98 74 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (98 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACCA
TATCTGGGACATGGCATTGGCACCGAGATGAGG
Found at i:34730095 original size:22 final size:19
Alignment explanation
Indices: 34730056--34730097 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
34730046 TGCAAAGTTG
34730056 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
34730075 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
34730097 A
1 A
34730098 ATTATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:34734172 original size:50 final size:50
Alignment explanation
Indices: 34734106--34734443 Score: 358
Period size: 51 Copynumber: 6.7 Consensus size: 50
34734096 TCATTCGATA
*
34734106 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* *
34734156 CATGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* * *
34734206 AACGTAGTAGCCTTCATATAGTACTACACACGTGACCAAAGCTTTT-CGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTT
* * * *** *
34734257 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
* * * *
34734308 CACCTAGTAGCCTTCACACT-GTACTACACACGTAACCAAAGCTTCT-CGGTA
1 CACGTAGTAGCCTTCACA-TAGTACTACACACGTGACC-AAG-TTTTACGGTT
* * * * *** *
34734359 CACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
*
34734410 CACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
34734444 TTCATCGATA
Statistics
Matches: 236, Mismatches: 42, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
49 5 0.02
50 85 0.36
51 138 0.58
52 6 0.03
53 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
Found at i:34734340 original size:102 final size:102
Alignment explanation
Indices: 34734100--34734443 Score: 471
Period size: 102 Copynumber: 3.4 Consensus size: 102
34734090 CTTTTATCAT
* * * **
34734100 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGTTCATGTAG
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAG
* * * ***
34734163 TAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * *
34734201 -CGGTTAACGTAGTAGCCTTCATATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
34734265 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
34734302 TCGATTCACCTAGTAGCCTTCACACT-GTACTACACACGTAACCAAAGCTTCTCGGTACACATTG
1 TCGATTCACGTAGTAGCCTTCACA-TAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAG
34734366 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
*
34734404 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTG
34734444 TTCATCGATA
Statistics
Matches: 214, Mismatches: 24, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
100 37 0.17
101 44 0.21
102 132 0.62
103 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:34744451 original size:15 final size:14
Alignment explanation
Indices: 34744420--34744454 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
34744410 ACTATCTGCT
*
34744420 TATGATATGTATGA
1 TATGATATGAATGA
34744434 TATGATATGAACTGA
1 TATGATATGAA-TGA
34744449 TATGAT
1 TATGAT
34744455 GTGATGGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.37, C:0.03, G:0.20, T:0.40
Consensus pattern (14 bp):
TATGATATGAATGA
Found at i:34751671 original size:23 final size:24
Alignment explanation
Indices: 34751639--34751695 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
34751629 GGTTAGTGTA
*
34751639 TTTAGTTAGTTTTAA-AGTTATTTT
1 TTTAGTTAG-TATAATAGTTATTTT
34751663 TTTA-TTAGTATAATTAGTTA-TTT
1 TTTAGTTAGTATAA-TAGTTATTTT
34751686 TTTAG-TAGTA
1 TTTAGTTAGTA
34751696 GTTTATTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 4 0.14
23 16 0.55
24 9 0.31
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (24 bp):
TTTAGTTAGTATAATAGTTATTTT
Found at i:34754573 original size:27 final size:29
Alignment explanation
Indices: 34754542--34754618 Score: 97
Period size: 27 Copynumber: 2.7 Consensus size: 29
34754532 TCAATTATTT
34754542 ACATATATTTGCATGAACTTGAT-T-GTC
1 ACATATATTTGCATGAACTTGATATGGTC
* *
34754569 ACATATATTTACATGAA-TACGATATGGTC
1 ACATATATTTGCATGAACT-TGATATGGTC
*
34754598 CCATATATTTGCATGAACTTG
1 ACATATATTTGCATGAACTTG
34754619 TAACATATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
26 1 0.02
27 19 0.46
28 1 0.02
29 19 0.46
30 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (29 bp):
ACATATATTTGCATGAACTTGATATGGTC
Found at i:34759658 original size:3 final size:3
Alignment explanation
Indices: 34759650--34759741 Score: 150
Period size: 3 Copynumber: 30.7 Consensus size: 3
34759640 TTGTATTAGT
34759650 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
34759698 TAA TAA TAA TAA TAA TAA CAA TACA TTA TAA TAA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TA
34759742 TTTAGTTCAT
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.02
3 79 0.95
4 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:34763202 original size:54 final size:54
Alignment explanation
Indices: 34763124--34763350 Score: 242
Period size: 54 Copynumber: 4.2 Consensus size: 54
34763114 CCCCAAAATA
** ** *
34763124 GGTAAAATGATAAAAATGTCCCCATAGAGTAAAATGACCAAAATACCCTCATAG
1 GGTAAAATGATCGAAATACCCCCATAGAGTAAAATGACCAAAATACCCCCATAG
* * * *
34763178 GGTAGAATGATCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGATCGAAATACCCCCATAGAGTAAAATGACCAAAATACCCCCATAG
* * * * * *
34763232 GATAAAATGATTGAAATACCCTCATATG-TTAAAATGACCAAAAAATATCCCTATAG
1 GGTAAAATGATCGAAATACCCCCATA-GAGTAAAATGACC--AAAATACCCCCATAG
* * * *
34763288 GGTAAAACGACCGAAATACCCCCATAGAGTAATATGACCGAAATACCCCCATA-
1 GGTAAAATGATCGAAATACCCCCATAGAGTAAAATGACCAAAATACCCCCATAG
34763341 GGTAAAATGA
1 GGTAAAATGA
34763351 CTGTTATACC
Statistics
Matches: 140, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
53 9 0.06
54 87 0.62
55 2 0.01
56 42 0.30
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (54 bp):
GGTAAAATGATCGAAATACCCCCATAGAGTAAAATGACCAAAATACCCCCATAG
Found at i:34763307 original size:110 final size:107
Alignment explanation
Indices: 34763153--34763350 Score: 299
Period size: 110 Copynumber: 1.8 Consensus size: 107
34763143 CCCCATAGAG
* * * * *
34763153 TAAAATGACCAAAATACCCTCATAGGGTAGAATGATCGAAATACCCCCATAGGGTAAAATGATCG
1 TAAAATGACCAAAATACCCTCATAGGGTAAAACGACCGAAATACCCCCATAGAGTAAAATGACCG
34763218 AAATACCCCCATAGGATAAAATGATTGAAATACCCTCATATGT
66 AAATACCCCCATAGG-TAAAATGATTGAAATACCCTCATATGT
*
34763261 TAAAATGACCAAAAAATATCCCT-ATAGGGTAAAACGACCGAAATACCCCCATAGAGTAATATGA
1 TAAAATGACC--AAAATA-CCCTCATAGGGTAAAACGACCGAAATACCCCCATAGAGTAAAATGA
34763325 CCGAAATACCCCCATAGGTAAAATGA
63 CCGAAATACCCCCATAGGTAAAATGA
34763351 CTGTTATACC
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
108 10 0.12
109 8 0.10
110 59 0.73
111 4 0.05
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.20
Consensus pattern (107 bp):
TAAAATGACCAAAATACCCTCATAGGGTAAAACGACCGAAATACCCCCATAGAGTAAAATGACCG
AAATACCCCCATAGGTAAAATGATTGAAATACCCTCATATGT
Found at i:34763312 original size:83 final size:82
Alignment explanation
Indices: 34763143--34763351 Score: 244
Period size: 83 Copynumber: 2.5 Consensus size: 82
34763133 ATAAAAATGT
* * * * *
34763143 CCCCATAGAGTAAAATGACCAAAATACCCTCATAGGGTAGAATGATC--GAAATACCCCCATAGG
1 CCCCATAGAGTAAAATGACCGAAATACCCCCATA-GGTAAAATGACCAAAAAATACCCCCATAGG
* *
34763206 GTAAAATGATCGAAATAC
65 GTAAAACGACCGAAATAC
** * * * *
34763224 CCCCATAG-GATAAAATGATTGAAATACCCTCATATGTTAAAATGACCAAAAAATATCCCTATAG
1 CCCCATAGAG-TAAAATGACCGAAATACCCCCATA-GGTAAAATGACCAAAAAATACCCCCATAG
34763288 GGTAAAACGACCGAAATAC
64 GGTAAAACGACCGAAATAC
*
34763307 CCCCATAGAGTAATATGACCGAAATACCCCCATAGGTAAAATGAC
1 CCCCATAGAGTAAAATGACCGAAATACCCCCATAGGTAAAATGAC
34763352 TGTTATACCC
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.01
81 38 0.36
82 10 0.09
83 57 0.53
84 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.15, T:0.20
Consensus pattern (82 bp):
CCCCATAGAGTAAAATGACCGAAATACCCCCATAGGTAAAATGACCAAAAAATACCCCCATAGGG
TAAAACGACCGAAATAC
Found at i:34763362 original size:26 final size:27
Alignment explanation
Indices: 34763143--34763351 Score: 208
Period size: 27 Copynumber: 7.7 Consensus size: 27
34763133 ATAAAAATGT
*
34763143 CCCCATAGAGTAAAATGACCAAAATAC
1 CCCCATAGAGTAAAATGACCGAAATAC
* * * *
34763170 CCTCATAGGGTAGAATGATCGAAATAC
1 CCCCATAGAGTAAAATGACCGAAATAC
* *
34763197 CCCCATAGGGTAAAATGATCGAAATAC
1 CCCCATAGAGTAAAATGACCGAAATAC
**
34763224 CCCCATAG-GATAAAATGATTGAAATAC
1 CCCCATAGAG-TAAAATGACCGAAATAC
* * * *
34763251 CCTCATATG-TTAAAATGACCAAAAAATAT
1 CCCCATA-GAGTAAAATGACC--GAAATAC
* * *
34763280 CCCTATAGGGTAAAACGACCGAAATAC
1 CCCCATAGAGTAAAATGACCGAAATAC
*
34763307 CCCCATAGAGTAATATGACCGAAATAC
1 CCCCATAGAGTAAAATGACCGAAATAC
34763334 CCCCATAG-GTAAAATGAC
1 CCCCATAGAGTAAAATGAC
34763352 TGTTATACCC
Statistics
Matches: 152, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
26 10 0.07
27 121 0.80
28 2 0.01
29 19 0.12
ACGTcount: A:0.43, C:0.22, G:0.15, T:0.20
Consensus pattern (27 bp):
CCCCATAGAGTAAAATGACCGAAATAC
Found at i:34770421 original size:3 final size:3
Alignment explanation
Indices: 34770407--34770455 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
34770397 TGTATTAGTC
* * *
34770407 AAT AAT ATT AAT AAT AAT AAT AAC AAT ACAT TAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
34770452 AAT A
1 AAT A
34770456 TTTAATTCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:34770768 original size:20 final size:20
Alignment explanation
Indices: 34770724--34770760 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
34770714 TTAGTATTTG
34770724 AATTAATTTATAATATAATT
1 AATTAATTTATAATATAATT
*
34770744 TATTAATTT-TAAT-TAAT
1 AATTAATTTATAATATAAT
34770761 ATAAATTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 4 0.25
19 4 0.25
20 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATTAATTTATAATATAATT
Found at i:34771385 original size:20 final size:20
Alignment explanation
Indices: 34771315--34771372 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
34771305 TAATTTATCG
* *
34771315 AAATTTCT-AAGGTTATACAA
1 AAATTTCTAAAGATT-TACCA
*
34771335 AAATTTCTAAAGCTTTACCA
1 AAATTTCTAAAGATTTACCA
34771355 AAATTTCTAAAGATTTAC
1 AAATTTCTAAAGATTTAC
34771373 TAGTATTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 29 0.85
21 5 0.15
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (20 bp):
AAATTTCTAAAGATTTACCA
Found at i:34771526 original size:20 final size:20
Alignment explanation
Indices: 34771511--34771549 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34771501 TATAAGGTTA
34771511 TAACAAAATATCTAAGGATT
1 TAACAAAATATCTAAGGATT
* *
34771531 TACCAAAATTTCTAAGGAT
1 TAACAAAATATCTAAGGAT
34771550 ATTTTGGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (20 bp):
TAACAAAATATCTAAGGATT
Found at i:34778634 original size:25 final size:25
Alignment explanation
Indices: 34778600--34778648 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
34778590 TACAGTGTAT
*
34778600 CTATAGTAGTCTCAATATATACTAC
1 CTATAGTAGTCTCAAGATATACTAC
* *
34778625 CTATAGTAGTTTCAGGATATACTA
1 CTATAGTAGTCTCAAGATATACTA
34778649 TCAAAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (25 bp):
CTATAGTAGTCTCAAGATATACTAC
Found at i:34779544 original size:53 final size:53
Alignment explanation
Indices: 34779463--34779572 Score: 211
Period size: 53 Copynumber: 2.1 Consensus size: 53
34779453 AGCCCATTTT
34779463 AGTACAGGTGCAGTCATGCATTAAGGCCTTGGCCTATTACAGTATCAGTAATC
1 AGTACAGGTGCAGTCATGCATTAAGGCCTTGGCCTATTACAGTATCAGTAATC
*
34779516 AGTACAGGTGCAGTCATGCATTAGGGCCTTGGCCTATTACAGTATCAGTAATC
1 AGTACAGGTGCAGTCATGCATTAAGGCCTTGGCCTATTACAGTATCAGTAATC
34779569 AGTA
1 AGTA
34779573 TAGTATCAGT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (53 bp):
AGTACAGGTGCAGTCATGCATTAAGGCCTTGGCCTATTACAGTATCAGTAATC
Found at i:34783128 original size:29 final size:29
Alignment explanation
Indices: 34783088--34783146 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
34783078 AATCAGCAAG
34783088 ATAATTTATCATATATAACATGATATTTA
1 ATAATTTATCATATATAACATGATATTTA
34783117 ATAATTTATCATATATAACATGATATTTA
1 ATAATTTATCATATATAACATGATATTTA
34783146 A
1 A
34783147 CATTTTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (29 bp):
ATAATTTATCATATATAACATGATATTTA
Found at i:34784077 original size:6 final size:6
Alignment explanation
Indices: 34784068--34784105 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
34784058 TGGAAAAATA
34784068 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
34784106 GATATGGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:34784526 original size:20 final size:20
Alignment explanation
Indices: 34784489--34784527 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34784479 GATGCGAGAA
*
34784489 GGGATTTGAACTTGGGTTTT
1 GGGATTTGAACTTCGGTTTT
*
34784509 GGGATTTGAATTTCGGTTT
1 GGGATTTGAACTTCGGTTT
34784528 CAAGAAATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.33, T:0.46
Consensus pattern (20 bp):
GGGATTTGAACTTCGGTTTT
Found at i:34786760 original size:44 final size:44
Alignment explanation
Indices: 34786697--34786787 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
34786687 AACTCTGTTT
34786697 TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
*
34786741 TTAGTTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
34786785 TTA
1 TTA
34786788 TTTGACCTAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (44 bp):
TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
Found at i:34787422 original size:20 final size:20
Alignment explanation
Indices: 34787393--34787431 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34787383 GGCACGAAAG
*
34787393 AAATCTTTAGAAATTTTGGC
1 AAATCCTTAGAAATTTTGGC
*
34787413 AAATCCTTAGATATTTTGG
1 AAATCCTTAGAAATTTTGG
34787432 TTTAACCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
AAATCCTTAGAAATTTTGGC
Found at i:34787569 original size:20 final size:20
Alignment explanation
Indices: 34787544--34787617 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
34787534 GGAAATCTTA
* *
34787544 AGAAATTTTGGTGAGCCCTT
1 AGAAATTTTGGTAAACCCTT
* *
34787564 AGAAATATTGGTAAATCCTT
1 AGAAATTTTGGTAAACCCTT
* * *
34787584 AGAAAGTTTGGAAAAGCCTT
1 AGAAATTTTGGTAAACCCTT
34787604 -GAAAATTTTGGTAA
1 AG-AAATTTTGGTAA
34787618 GTCTTTAGAT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 1 0.02
20 42 0.98
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.32
Consensus pattern (20 bp):
AGAAATTTTGGTAAACCCTT
Found at i:34787749 original size:20 final size:19
Alignment explanation
Indices: 34787726--34787793 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 19
34787716 AAATCTTTAA
*
34787726 AAATTTTGATGAATCCTTAG
1 AAATTTTGATAAATCCTT-G
*
34787746 AAATATTGATAAATCCTTG
1 AAATTTTGATAAATCCTTG
* *
34787765 AAAATTTTGCTAAAGCCTTGG
1 -AAATTTTGATAAATCCTT-G
34787786 AAATTTTG
1 AAATTTTG
34787794 GCATGTTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 1 0.02
20 39 0.95
21 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
AAATTTTGATAAATCCTTG
Found at i:34788025 original size:17 final size:18
Alignment explanation
Indices: 34788003--34788056 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 18
34787993 ATAACCTTAG
34788003 AAATTTTGGTAAATCCT-
1 AAATTTTGGTAAATCCTA
* *
34788020 AAATTTTGGCAAAGCCTTA
1 AAATTTTGGTAAATCC-TA
*
34788039 GAAATTTTAGTAAATCCT
1 -AAATTTTGGTAAATCCT
34788057 TAGCATATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 14 0.48
18 1 0.03
19 1 0.03
20 13 0.45
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (18 bp):
AAATTTTGGTAAATCCTA
Found at i:34788057 original size:20 final size:20
Alignment explanation
Indices: 34787842--34788287 Score: 164
Period size: 20 Copynumber: 22.7 Consensus size: 20
34787832 AGGAAATCAA
* *
34787842 TAGATATTTTGGTAAA-GCT
1 TAGAAATTTTGGTAAATCCT
* *
34787861 TAGAAATTTTGGTAATTCCC
1 TAGAAATTTTGGTAAATCCT
* * **
34787881 TATATATTTTTATATAA-CCT
1 TAGAAATTTTGGTA-AATCCT
* *
34787901 TAGAAATTTGGGT-AAGCCT
1 TAGAAATTTTGGTAAATCCT
* *
34787920 TAGAATTTTTGGTAAATGCT
1 TAGAAATTTTGGTAAATCCT
* *
34787940 TGGATATTTTGGTATAAT-CT
1 TAGAAATTTTGGTA-AATCCT
* *
34787960 TGGAAAATTTGGTAAATCCT
1 TAGAAATTTTGGTAAATCCT
* *
34787980 TATG-CATTTTGATATAA-CCT
1 TA-GAAATTTTGGTA-AATCCT
34788000 TAGAAATTTTGGTAAATCC-
1 TAGAAATTTTGGTAAATCCT
* *
34788019 T--AAATTTTGGCAAAGCCT
1 TAGAAATTTTGGTAAATCCT
*
34788037 TAGAAATTTTAGTAAATCCT
1 TAGAAATTTTGGTAAATCCT
* * *
34788057 TAG-CATATTGTTAAAT-CT
1 TAGAAATTTTGGTAAATCCT
*
34788075 ATAGAAATATTGGT--ATGCC-
1 -TAGAAATTTTGGTAAAT-CCT
* * **
34788094 -A-AAATATTGAGTTGATATAGTT
1 TAGAAATTTTG-G-T-AAAT-CCT
* ** *
34788116 TGAGACATTAAGG-AAAT-GT
1 T-AGAAATTTTGGTAAATCCT
*
34788135 CTAGAAATATTGGTAAATCCT
1 -TAGAAATTTTGGTAAATCCT
*
34788156 TAGAAA-TTTGGTAAAACCT
1 TAGAAATTTTGGTAAATCCT
* *
34788175 TAGATA-TTTGGTAAATCTT
1 TAGAAATTTTGGTAAATCCT
* **
34788194 TA-AATATTTTGGCATAA-GAT
1 TAGAA-ATTTTGGTA-AATCCT
* *
34788214 TAGAAA-TGTGAGTAAATCTT
1 TAGAAATTTTG-GTAAATCCT
** *
34788234 TAGATGTTTTGGTAAAACCT
1 TAGAAATTTTGGTAAATCCT
* *
34788254 TATAAAGTTTGGTAAATCCT
1 TAGAAATTTTGGTAAATCCT
*
34788274 TAGAAATATTGGTA
1 TAGAAATTTTGGTA
34788288 TCCCTAAATG
Statistics
Matches: 310, Mismatches: 81, Indels: 71
0.67 0.18 0.15
Matches are distributed among these distances:
16 8 0.03
17 16 0.05
18 9 0.03
19 90 0.29
20 161 0.52
21 20 0.06
24 2 0.01
25 4 0.01
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (20 bp):
TAGAAATTTTGGTAAATCCT
Found at i:34792288 original size:81 final size:82
Alignment explanation
Indices: 34792149--34792345 Score: 249
Period size: 81 Copynumber: 2.4 Consensus size: 82
34792139 ATCTGGACTA
**
34792149 AAATACCCTCGATA-GGTAAAATGACTAAAATACCCTCGATAGGTAAAATAACCAAAATACCCTC
1 AAATACCCTCGATAGGGTAAAATGACCGAAATACCCTCGATAGGTAAAATAACCAAAATACCCTC
*
34792213 GATGGGTACAATGATC-G
66 GATGGGTAAAATG-TCTG
* * *
34792230 AAATACCCTCGA-AGGGTAAAATGACCGAAATACCCTTGATGGGTAAAATAACCGAAATACCCTC
1 AAATACCCTCGATAGGGTAAAATGACCGAAATACCCTCGATAGGTAAAATAACCAAAATACCCTC
**
34792294 GATTTGTAAAATGTCTG
66 GATGGGTAAAATGTCTG
** * *
34792311 AAACGCCC-CCATAGGGTAAAATGATCGAAATACCC
1 AAATACCCTCGATAGGGTAAAATGACCGAAATACCC
34792346 CTGTAGGGTA
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 5 0.05
81 96 0.95
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (82 bp):
AAATACCCTCGATAGGGTAAAATGACCGAAATACCCTCGATAGGTAAAATAACCAAAATACCCTC
GATGGGTAAAATGTCTG
Found at i:34792313 original size:27 final size:27
Alignment explanation
Indices: 34792149--34792345 Score: 207
Period size: 27 Copynumber: 7.3 Consensus size: 27
34792139 ATCTGGACTA
* **
34792149 AAATACCCTCGATAGGTAAAATGACTA
1 AAATACCCTCGATGGGTAAAATGACCG
* * *
34792176 AAATACCCTCGATAGGTAAAATAACCA
1 AAATACCCTCGATGGGTAAAATGACCG
* *
34792203 AAATACCCTCGATGGGTACAATGATCG
1 AAATACCCTCGATGGGTAAAATGACCG
*
34792230 AAATACCCTCGAAGGGTAAAATGACCG
1 AAATACCCTCGATGGGTAAAATGACCG
* *
34792257 AAATACCCTTGATGGGTAAAATAACCG
1 AAATACCCTCGATGGGTAAAATGACCG
** * *
34792284 AAATACCCTCGATTTGTAAAATGTCTG
1 AAATACCCTCGATGGGTAAAATGACCG
** * *
34792311 AAACGCCC-CCATAGGGTAAAATGATCG
1 AAATACCCTCGAT-GGGTAAAATGACCG
34792338 AAATACCC
1 AAATACCC
34792346 CTGTAGGGTA
Statistics
Matches: 140, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 3 0.02
27 137 0.98
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (27 bp):
AAATACCCTCGATGGGTAAAATGACCG
Found at i:34792346 original size:27 final size:28
Alignment explanation
Indices: 34792149--34792453 Score: 198
Period size: 27 Copynumber: 11.3 Consensus size: 28
34792139 ATCTGGACTA
*
34792149 AAATACCCTCGATA-GGTAAAATGA-CTA
1 AAATACCCTCGATAGGGTAAAATGATC-G
* * *
34792176 AAATACCCTCGATA-GGTAAAATAACCA
1 AAATACCCTCGATAGGGTAAAATGATCG
*
34792203 AAATACCCTCGAT-GGGTACAATGATCG
1 AAATACCCTCGATAGGGTAAAATGATCG
*
34792230 AAATACCCTCGA-AGGGTAAAATGACCG
1 AAATACCCTCGATAGGGTAAAATGATCG
* * *
34792257 AAATACCCTTGAT-GGGTAAAATAACCG
1 AAATACCCTCGATAGGGTAAAATGATCG
**
34792284 AAATACCCTCGAT-TTGTAAAATG-TCTG
1 AAATACCCTCGATAGGGTAAAATGATC-G
** *
34792311 AAACGCCC-CCATAGGGTAAAATGATCG
1 AAATACCCTCGATAGGGTAAAATGATCG
*
34792338 AAATACCC-CTG-TAGGGTAGAAT-A-CTG
1 AAATACCCTC-GATAGGGTAAAATGATC-G
* * * *
34792364 AAATATCCTTG-TAGGGTAAAATAACCG
1 AAATACCCTCGATAGGGTAAAATGATCG
* *
34792391 TAATGCCC-CTG-TAGGGTAAAATGATC-
1 AAATACCCTC-GATAGGGTAAAATGATCG
*
34792417 ATAATACCC-CTG-TAGGGTAAAATAATCG
1 A-AATACCCTC-GATAGGGTAAAATGATCG
* *
34792445 TAATGCCCT
1 AAATACCCT
34792454 GGTGGGTAAA
Statistics
Matches: 225, Mismatches: 37, Indels: 31
0.77 0.13 0.11
Matches are distributed among these distances:
25 1 0.00
26 24 0.11
27 196 0.87
28 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (28 bp):
AAATACCCTCGATAGGGTAAAATGATCG
Found at i:34792355 original size:81 final size:80
Alignment explanation
Indices: 34792190--34792463 Score: 245
Period size: 81 Copynumber: 3.4 Consensus size: 80
34792180 ACCCTCGATA
* * * *
34792190 GGTAAAATAACCAAAATACCCTCGATGGGTACAATGATCGAAATACCCTCGA-AGGGTAAAATGA
1 GGTAAAATAACCGAAATACCCTCGATGGGTAAAATG-TCGAAATGCCC-CCATAGGGTAAAATGA
* *
34792254 CCGAAATACCCTTG-ATG
64 TCGAAATACCCCTGTA-G
** *
34792271 GGTAAAATAACCGAAATACCCTCGATTTGTAAAATGTCTGAAACGCCCCCATAGGGTAAAATGAT
1 GGTAAAATAACCGAAATACCCTCGATGGGTAAAATGTC-GAAATGCCCCCATAGGGTAAAATGAT
34792336 CGAAATACCCCTGTAG
65 CGAAATACCCCTGTAG
* * * * ** * **
34792352 GGTAGAAT-ACTGAAATATCCTTG-TAGGGTAAAATAACCGTAATGCCCCTGTAGGGTAAAATGA
1 GGTAAAATAACCGAAATACCCTCGAT-GGGTAAAAT-GTCGAAATGCCCCCATAGGGTAAAATGA
34792415 TC-ATAATACCCCTGTAG
64 TCGA-AATACCCCTGTAG
* * * *
34792432 GGTAAAATAATCGTAATGCCCT-GGTGGGTAAA
1 GGTAAAATAACCGAAATACCCTCGATGGGTAAA
34792464 TGACTATTTT
Statistics
Matches: 158, Mismatches: 27, Indels: 17
0.78 0.13 0.08
Matches are distributed among these distances:
79 2 0.01
80 74 0.47
81 81 0.51
82 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (80 bp):
GGTAAAATAACCGAAATACCCTCGATGGGTAAAATGTCGAAATGCCCCCATAGGGTAAAATGATC
GAAATACCCCTGTAG
Found at i:34792439 original size:54 final size:53
Alignment explanation
Indices: 34792322--34792452 Score: 165
Period size: 53 Copynumber: 2.5 Consensus size: 53
34792312 AACGCCCCCA
* * * * * * *
34792322 TAGGGTAAAATGATCGAAATACCCCTGTAGGGTAGAATACTGAAATATCCTTG
1 TAGGGTAAAATAATCGTAATGCCCCTGTAGGGTAAAATACTCAAATACCCCTG
*
34792375 TAGGGTAAAATAACCGTAATGCCCCTGTAGGGTAAAATGA-TCATAATACCCCTG
1 TAGGGTAAAATAATCGTAATGCCCCTGTAGGGTAAAAT-ACTCA-AATACCCCTG
34792429 TAGGGTAAAATAATCGTAATGCCC
1 TAGGGTAAAATAATCGTAATGCCC
34792453 TGGTGGGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
53 35 0.52
54 32 0.48
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (53 bp):
TAGGGTAAAATAATCGTAATGCCCCTGTAGGGTAAAATACTCAAATACCCCTG
Found at i:34792514 original size:23 final size:23
Alignment explanation
Indices: 34792498--34792544 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
34792488 AAATGATTAT
34792498 TTTGTCTGTGGTTAAATGACTGA
1 TTTGTCTGTGGTTAAATGACTGA
* *
34792521 TTTGTCTGTGTTTGAATGACTGA
1 TTTGTCTGTGGTTAAATGACTGA
34792544 T
1 T
34792545 ACTAAGCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.47
Consensus pattern (23 bp):
TTTGTCTGTGGTTAAATGACTGA
Found at i:34792726 original size:26 final size:26
Alignment explanation
Indices: 34792671--34792726 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
34792661 ATATTATTAT
* ** *
34792671 TGGCAGCTTTGCTGTGATACTGTTGC
1 TGGCAGCTTTGCTGCGATACTACTGA
*
34792697 TGGCAGCTTTGCTGCGATGCTACTGA
1 TGGCAGCTTTGCTGCGATACTACTGA
34792723 TGGC
1 TGGC
34792727 TTTGTGCCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.12, C:0.21, G:0.32, T:0.34
Consensus pattern (26 bp):
TGGCAGCTTTGCTGCGATACTACTGA
Found at i:34792756 original size:32 final size:33
Alignment explanation
Indices: 34792715--34792962 Score: 150
Period size: 32 Copynumber: 7.8 Consensus size: 33
34792705 TTGCTGCGAT
*
34792715 GCTACTGATGGCTTTGTGCCAG-TCGTAGTACC
1 GCTACTGATGGCTTTGTGCCAGATCATAGTACC
*
34792747 GCTACTGATGGCTTTGTGCC-GATCATAGTACT
1 GCTACTGATGGCTTTGTGCCAGATCATAGTACC
* *
34792779 GCTACTGAT-GCTTTGTGCCA-ATGATATTACC
1 GCTACTGATGGCTTTGTGCCAGATCATAGTACC
* * ** * *
34792810 GTTA-TCGATGGCTGTGTG-TTGATCAT-TTCACT
1 GCTACT-GATGGCTTTGTGCCAGATCATAGT-ACC
** * * *
34792842 ATTATTGATGG-TTGTGTACC-GATCATA-TCACT
1 GCTACTGATGGCTT-TGTGCCAGATCATAGT-ACC
34792874 GCTACTGATGGCTTTGTGCCA-ATCAT-GTTACC
1 GCTACTGATGGCTTTGTGCCAGATCATAG-TACC
* * *
34792906 GTTACTAATGG-TTGTGTGCC-GATCAT-GTCACT
1 GCTACTGATGGCTT-TGTGCCAGATCATAGT-ACC
*
34792938 ACTACTGATGGCTTTGTGCCA-ATCA
1 GCTACTGATGGCTTTGTGCCAGATCA
34792963 CATTACTGTA
Statistics
Matches: 171, Mismatches: 26, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
30 1 0.01
31 31 0.18
32 133 0.78
33 6 0.04
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (33 bp):
GCTACTGATGGCTTTGTGCCAGATCATAGTACC
Found at i:34792923 original size:96 final size:95
Alignment explanation
Indices: 34792748--34792954 Score: 267
Period size: 96 Copynumber: 2.2 Consensus size: 95
34792738 CGTAGTACCG
* *
34792748 CTACTGATGGCTTTGTGCCGATCATAGTACTGCTACTGATGCTTTGTGCCAATGATATTACCGTT
1 CTACTGATGGCTTTGTACCGATCATAGTACTGCTACTGATGCTTTGTGCCAATCATATTACCGTT
* ** *
34792813 ATCGATGGCTGTGTGTTGATCATTTCACTA
66 ATCAATGGCTGTGTGCCGATCATGTCACTA
* * *
34792843 TTATTGATGG-TTGTGTACCGATCATA-TCACTGCTACTGATGGCTTTGTGCCAATCATGTTACC
1 CTACTGATGGCTT-TGTACCGATCATAGT-ACTGCTACTGAT-GCTTTGTGCCAATCATATTACC
*
34792906 GTTA-CTAATGGTTGTGTGCCGATCATGTCACTA
63 GTTATC-AATGGCTGTGTGCCGATCATGTCACTA
34792939 CTACTGATGGCTTTGT
1 CTACTGATGGCTTTGT
34792955 GCCAATCACA
Statistics
Matches: 95, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
94 3 0.03
95 33 0.35
96 57 0.60
97 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (95 bp):
CTACTGATGGCTTTGTACCGATCATAGTACTGCTACTGATGCTTTGTGCCAATCATATTACCGTT
ATCAATGGCTGTGTGCCGATCATGTCACTA
Found at i:34794610 original size:29 final size:29
Alignment explanation
Indices: 34794577--34794655 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 29
34794567 AAGAAGTGCG
*
34794577 TTTGTGG-AGATCTTTGGT-AAATGGAAGCC
1 TTTGTGGCA-ATCTTT-GTCAAAAGGAAGCC
34794606 TTTGTGGCAATCTTTGTCAAAAGGAAGCC
1 TTTGTGGCAATCTTTGTCAAAAGGAAGCC
* * *
34794635 TTTTTGACAACCTTTGTCAAA
1 TTTGTGGCAATCTTTGTCAAA
34794656 GAATGCCATT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 2 0.05
29 41 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (29 bp):
TTTGTGGCAATCTTTGTCAAAAGGAAGCC
Found at i:34794872 original size:16 final size:16
Alignment explanation
Indices: 34794851--34794902 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
34794841 TTTGGTTCGC
34794851 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
34794867 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
34794883 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
34794899 TGTA
1 TGTA
34794903 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:34794988 original size:39 final size:43
Alignment explanation
Indices: 34794883--34794992 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
34794873 GGATTAGAGG
34794883 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
34794928 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
34794968 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
34794993 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:34797045 original size:25 final size:25
Alignment explanation
Indices: 34797011--34797062 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
34797001 AAGAATCAGT
34797011 AAACTTAAACAGACGGGACTGGTGA
1 AAACTTAAACAGACGGGACTGGTGA
34797036 AAACTTAAACAGACGGGACTGGTGA
1 AAACTTAAACAGACGGGACTGGTGA
34797061 AA
1 AA
34797063 TATAAATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.15, G:0.27, T:0.15
Consensus pattern (25 bp):
AAACTTAAACAGACGGGACTGGTGA
Found at i:34797412 original size:137 final size:138
Alignment explanation
Indices: 34797163--34797426 Score: 435
Period size: 137 Copynumber: 1.9 Consensus size: 138
34797153 AACTTAAAAT
* *
34797163 TGAAATCAATTATGGAATATGTTACATTCAAAATAACAATAAACAAAATATGGATATAACACTAG
1 TGAAATCAATTATGGAATATGTTACATTCAAAATAACAATAAACAAAAGATGGATATAACACTAA
* *
34797228 CTACAAAAGTAATTTAACAATATCATGTGGTAACAAGTTCACCTGAAAGTG-AGATATGAAAGAT
66 CTACAAAAGTAATTTAACAATATCATGTAGTAACAAGTTCACATGAAAGTGCA-ATATGAAAGAT
34797292 ATGCCCAAA
130 ATGCCCAAA
* *
34797301 TGAAATCATTTATGGCATGA-GTTACATTCAAAATAACAAT-AACAAAAGATGGATATAACACTA
1 TGAAATCAATTATGGAAT-ATGTTACATTCAAAATAACAATAAACAAAAGATGGATATAACACTA
34797364 ACTACAAAAGTAATTTAACAATATCATGTAGTAACAAGTTCACATGAAAGTGCAATATGAAAG
65 ACTACAAAAGTAATTTAACAATATCATGTAGTAACAAGTTCACATGAAAGTGCAATATGAAAG
34797427 CCATGCCATT
Statistics
Matches: 118, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
137 80 0.68
138 37 0.31
139 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (138 bp):
TGAAATCAATTATGGAATATGTTACATTCAAAATAACAATAAACAAAAGATGGATATAACACTAA
CTACAAAAGTAATTTAACAATATCATGTAGTAACAAGTTCACATGAAAGTGCAATATGAAAGATA
TGCCCAAA
Found at i:34799115 original size:29 final size:29
Alignment explanation
Indices: 34799073--34799317 Score: 215
Period size: 29 Copynumber: 8.4 Consensus size: 29
34799063 AGTTTCTGTA
34799073 TCTGTTAAATGGAGGCCTTTGTGGCTATC
1 TCTGTTAAATGGAGGCCTTTGTGGCTATC
* *
34799102 TCTGTTAAAGGGAGGCCTTTATGGCTATC
1 TCTGTTAAATGGAGGCCTTTGTGGCTATC
*
34799131 TCCGTTAAATGGAGGCCTTTGTGGCTATC
1 TCTGTTAAATGGAGGCCTTTGTGGCTATC
* *
34799160 TCAT-TTAAATGGAAGCCTTTGTGGCGATC
1 TC-TGTTAAATGGAGGCCTTTGTGGCTATC
* * * ** *
34799189 TCTGTTAAATGGAAGCCTCTCTAACGATC
1 TCTGTTAAATGGAGGCCTTTGTGGCTATC
* * ** * *
34799218 TTTTTTAAATGGAAACCTTTGAGACTATC
1 TCTGTTAAATGGAGGCCTTTGTGGCTATC
* * * * *
34799247 TTTATTAAATGAAAGCCTTTGTGG-TAATG
1 TCTGTTAAATGGAGGCCTTTGTGGCT-ATC
* * * **
34799276 TTTGTGAAATGTAAACCTTTGTGGCTATC
1 TCTGTTAAATGGAGGCCTTTGTGGCTATC
34799305 TCTGTTAAATGGA
1 TCTGTTAAATGGA
34799318 ATCCCTCCAT
Statistics
Matches: 178, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
28 2 0.01
29 175 0.98
30 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (29 bp):
TCTGTTAAATGGAGGCCTTTGTGGCTATC
Found at i:34799225 original size:58 final size:55
Alignment explanation
Indices: 34799164--34799375 Score: 167
Period size: 58 Copynumber: 3.8 Consensus size: 55
34799154 GCTATCTCAT
* *
34799164 TTAAATGGAAGCCTTTGTGGCGATCTCTGTTAAATGGAAGCCTCTCTAACGATCTTTT
1 TTAAATGGAAACCTTTGTGGCGATCTCTGTTAAATGGAAGCCTCTCT--C-ATCTTTG
* * * * * * * * * *
34799222 TTAAATGGAAACCTTTGAGACTATCTTTATTAAATGAAAGCCTTTGTGGTAATGTTTG
1 TTAAATGGAAACCTTTGTGGCGATCTCTGTTAAATGGAAGCC--TCT-CTCATCTTTG
* * * *
34799280 TGAAATGTAAACCTTTGTGGCTATCTCTGTTAAATGGAATCC-CTC-CATCTTTG
1 TTAAATGGAAACCTTTGTGGCGATCTCTGTTAAATGGAAGCCTCTCTCATCTTTG
* * * * *
34799333 TTAAATGGAAGCTTTTGTGGTGATCTTTGTTAAATAGAAGCCT
1 TTAAATGGAAACCTTTGTGGCGATCTCTGTTAAATGGAAGCCT
34799376 TTATAGCAAT
Statistics
Matches: 117, Mismatches: 33, Indels: 12
0.72 0.20 0.07
Matches are distributed among these distances:
53 39 0.33
55 1 0.01
58 74 0.63
60 2 0.02
61 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (55 bp):
TTAAATGGAAACCTTTGTGGCGATCTCTGTTAAATGGAAGCCTCTCTCATCTTTG
Found at i:34799387 original size:29 final size:29
Alignment explanation
Indices: 34799326--34799387 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
34799316 GAATCCCTCC
* * * * **
34799326 ATCTTTGTTAAATGGAAGCTTTTGTGGTG
1 ATCTTTGTTAAATAGAAGCCTTTATAGCA
34799355 ATCTTTGTTAAATAGAAGCCTTTATAGCA
1 ATCTTTGTTAAATAGAAGCCTTTATAGCA
34799384 ATCT
1 ATCT
34799388 CTATCAAAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.42
Consensus pattern (29 bp):
ATCTTTGTTAAATAGAAGCCTTTATAGCA
Found at i:34800094 original size:28 final size:29
Alignment explanation
Indices: 34800054--34800295 Score: 132
Period size: 29 Copynumber: 8.4 Consensus size: 29
34800044 TTTCTGTATA
* *
34800054 TGTTAAATGGAGG-CTTTTTTGCTATCTC
1 TGTTAAATGGAGGCCTTTATGGCTATCTC
* *
34800082 TGTTAAATGGAGGCCTTTATTGCTGTCTC
1 TGTTAAATGGAGGCCTTTATGGCTATCTC
* * *
34800111 CGTTAAATAGG-GGCCTTTCTGGGTATCTC
1 TGTTAAAT-GGAGGCCTTTATGGCTATCTC
* * * * * *
34800140 TATTAAATGGAAGCGTTTGTGGCAATCTT
1 TGTTAAATGGAGGCCTTTATGGCTATCTC
* * * * * *
34800169 TGTTAAATGAAATG-CTCTCTGGCGATCTT
1 TGTTAAATG-GAGGCCTTTATGGCTATCTC
* ** * *
34800198 TTTTAAATGGAAACCTTTCTGACTATCTC
1 TGTTAAATGGAGGCCTTTATGGCTATCTC
* * * *
34800227 TGTTAAATGGAAGCCTTTGTGG-TAATGTT
1 TGTTAAATGGAGGCCTTTATGGCT-ATCTC
* ** * *
34800256 TGTGAAATGGAAACCTTTGTGGCTGTCTC
1 TGTTAAATGGAGGCCTTTATGGCTATCTC
34800285 TGTTAAATGGA
1 TGTTAAATGGA
34800296 AACCTGCCAT
Statistics
Matches: 165, Mismatches: 42, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
28 17 0.10
29 143 0.87
30 5 0.03
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (29 bp):
TGTTAAATGGAGGCCTTTATGGCTATCTC
Found at i:34800291 original size:87 final size:87
Alignment explanation
Indices: 34800124--34800300 Score: 214
Period size: 87 Copynumber: 2.0 Consensus size: 87
34800114 TAAATAGGGG
** * * *
34800124 CCTTTCTGGGTATCTCTATTAAATGGAAGCGTTTGTGGCAATCTTTGTTAAATGAAATGCTCTCT
1 CCTTTCTGACTATCTCTATTAAATGGAAGCCTTTGTGGCAATCTTTGTGAAATGAAATCCTCTCT
* *
34800189 GGCGATCTTTTTTAAATGGAAA
66 GGCGATCTCTGTTAAATGGAAA
* * * * *
34800211 CCTTTCTGACTATCTCTGTTAAATGGAAGCCTTTGTGGTAATGTTTGTGAAATGGAAA-CCTTTG
1 CCTTTCTGACTATCTCTATTAAATGGAAGCCTTTGTGGCAATCTTTGTGAAAT-GAAATCCTCTC
34800275 TGGCTG-TCTCTGTTAAATGGAAA
65 TGGC-GATCTCTGTTAAATGGAAA
34800298 CCT
1 CCT
34800301 GCCATCTATT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
87 71 0.93
88 5 0.07
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.38
Consensus pattern (87 bp):
CCTTTCTGACTATCTCTATTAAATGGAAGCCTTTGTGGCAATCTTTGTGAAATGAAATCCTCTCT
GGCGATCTCTGTTAAATGGAAA
Found at i:34800497 original size:29 final size:29
Alignment explanation
Indices: 34800463--34800615 Score: 124
Period size: 29 Copynumber: 5.4 Consensus size: 29
34800453 CGAATGAAAT
34800463 CCTTTGTGGCAATATTTGTTAAATGGAAG
1 CCTTTGTGGCAATATTTGTTAAATGGAAG
34800492 CCTTTGTGGCAATATTTGTTAAATGGAAAG
1 CCTTTGTGGCAATATTTGTTAAATGG-AAG
*** * *
34800522 -CTTTGTGGTTGT-TTATGTGAAACGGAAG
1 CCTTTGTGGCAATATT-TGTTAAATGGAAG
* * *
34800550 -C----TCGCCATGTTT-TTAAAATGGAAG
1 CCTTTGTGGCAATATTTGTT-AAATGGAAG
* *
34800574 CCTTTGTGGCGATCTTTGTTAAATGGAAG
1 CCTTTGTGGCAATATTTGTTAAATGGAAG
*
34800603 GCTTTGTGGCAAT
1 CCTTTGTGGCAAT
34800616 CTCTATCAAA
Statistics
Matches: 98, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
23 1 0.01
24 12 0.12
25 3 0.03
28 6 0.06
29 71 0.72
30 5 0.05
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.37
Consensus pattern (29 bp):
CCTTTGTGGCAATATTTGTTAAATGGAAG
Found at i:34800572 original size:252 final size:252
Alignment explanation
Indices: 34800227--34800704 Score: 681
Period size: 252 Copynumber: 1.9 Consensus size: 252
34800217 TGACTATCTC
* * * *
34800227 TGTTAAATGGAAGCCTTTGTGGTAATGTTTGTGAAATGGAAACCTTTGTGGCTGTCTCTGTTAAA
1 TGTTAAATGGAAGCCTTTGTGGCAATATTTGTGAAATGGAAACCTTTGTGGCTGTCTATGTGAAA
* * *
34800292 TGGAAACCTGCCATCTATTTTAAATGGAAGCCTCTGTAGTGATTTTTGTTAAATAGAAGACTTTG
66 CGGAAACCTGCCATCTATTTTAAATGGAAGCCTCTGTAGCGATCTTTGTTAAATAGAAGACTTTG
* * * *
34800357 TGACAATGTCTATCAAAAGGAAGCCTTTGTGACAACCTTTCTCAACGGACGCCATTGTGGCGAGG
131 TGACAATCTCTATCAAAAGGAAGCCTTTGTGACAACCTTTCTCAAAGGACGCCATTATGGCGAGA
*
34800422 CTCTAAAAGGAAAGCCTCTATGACTATCTTTCGAATGAAATCCTTTGTGGCAATATT
196 CTCCAAAAGGAAAGCCTCTATGACTATCTTTCGAATGAAATCCTTTGTGGCAATATT
* * * *
34800479 TGTTAAATGGAAGCCTTTGTGGCAATATTTGTTAAATGGAAAGCTTTGTGGTTGTTTATGTGAAA
1 TGTTAAATGGAAGCCTTTGTGGCAATATTTGTGAAATGGAAACCTTTGTGGCTGTCTATGTGAAA
* * * * * *
34800544 CGG-AAGCTCGCCATGT-TTTTAAAATGGAAGCCTTTGTGGCGATCTTTGTTAAATGGAAGGCTT
66 CGGAAACCT-GCCATCTATTTT-AAATGGAAGCCTCTGTAGCGATCTTTGTTAAATAGAAGACTT
* * * *
34800607 TGTGGCAATCTCTATCAAAAGGAAGCTTTTGTGACAACCTTTGTCAAAGGACGCCATTATGTCGA
129 TGTGACAATCTCTATCAAAAGGAAGCCTTTGTGACAACCTTTCTCAAAGGACGCCATTATGGCGA
*
34800672 GACTCCAAAAGGAAAGCCTCTGTGACTATCTTT
194 GACTCCAAAAGGAAAGCCTCTATGACTATCTTT
34800705 GGAAAGGAAT
Statistics
Matches: 197, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
251 8 0.04
252 189 0.96
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (252 bp):
TGTTAAATGGAAGCCTTTGTGGCAATATTTGTGAAATGGAAACCTTTGTGGCTGTCTATGTGAAA
CGGAAACCTGCCATCTATTTTAAATGGAAGCCTCTGTAGCGATCTTTGTTAAATAGAAGACTTTG
TGACAATCTCTATCAAAAGGAAGCCTTTGTGACAACCTTTCTCAAAGGACGCCATTATGGCGAGA
CTCCAAAAGGAAAGCCTCTATGACTATCTTTCGAATGAAATCCTTTGTGGCAATATT
Found at i:34800630 original size:29 final size:29
Alignment explanation
Indices: 34800564--34800635 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
34800554 CCATGTTTTT
* * * * *
34800564 AAAATGGAAGCCTTTGTGGCGATCTTTGTT
1 AAAA-GGAAGGCTTTGTGGCAATCTCTATC
*
34800594 AAATGGAAGGCTTTGTGGCAATCTCTATC
1 AAAAGGAAGGCTTTGTGGCAATCTCTATC
34800623 AAAAGGAA-GCTTT
1 AAAAGGAAGGCTTT
34800636 TGTGACAACC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
28 5 0.14
29 27 0.77
30 3 0.09
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (29 bp):
AAAAGGAAGGCTTTGTGGCAATCTCTATC
Found at i:34800631 original size:82 final size:82
Alignment explanation
Indices: 34800483--34800633 Score: 203
Period size: 82 Copynumber: 1.8 Consensus size: 82
34800473 AATATTTGTT
*** * * * *
34800483 AAATGGAAGCCTTTGTGGCAATATTTGTTAAATGGAAAGCTTTGTGGTTGTTTATGTGAAACGGA
1 AAATGGAAGCCTTTGTGGCAATATTTGTTAAATGGAAAGCTTTGTGGCAATCTATATCAAAAGGA
34800548 AGCTCGCCATGTTTTTA
66 AGCTCGCCATGTTTTTA
* * * *
34800565 AAATGGAAGCCTTTGTGGCGATCTTTGTTAAATGGAAGGCTTTGTGGCAATCTCTATCAAAAGGA
1 AAATGGAAGCCTTTGTGGCAATATTTGTTAAATGGAAAGCTTTGTGGCAATCTATATCAAAAGGA
34800630 AGCT
66 AGCT
34800634 TTTGTGACAA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 58 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (82 bp):
AAATGGAAGCCTTTGTGGCAATATTTGTTAAATGGAAAGCTTTGTGGCAATCTATATCAAAAGGA
AGCTCGCCATGTTTTTA
Found at i:34801303 original size:29 final size:29
Alignment explanation
Indices: 34801264--34801659 Score: 254
Period size: 29 Copynumber: 13.8 Consensus size: 29
34801254 AGTTTTTGTA
34801264 TCTGTTAAATGGAAGCCTTTGTGGTGATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * * *
34801293 TCTATTAAATGGAGGCCTTTTTGGGGATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * * *
34801322 TTTATGAAATGGAGGCCTTTGTGGCT-ATC
1 TCTGTTAAATGGAAGCCTTTGTGG-TGATC
* * * *
34801351 TTTGTTAAATGGAGGCCATTATGGCT-ATC
1 TCTGTTAAATGGAAGCCTTTGTGG-TGATC
*
34801380 TCTGGTAAATGG-AGTCCTTTGTGG-GCATC
1 TCTGTTAAATGGAAG-CCTTTGTGGTG-ATC
* * *
34801409 TCTGTTAAATGGATGCCTTTGTAGCGATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * * *
34801438 TCTATTAAATGGAAGCCTTTCTGGCGATG
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * * * *
34801467 TTTTTTAAATGGAAACCTTTCTGACT-ATC
1 TCTGTTAAATGGAAGCCTTTGTG-GTGATC
* *
34801496 TCTGTTAAATGGAAGCCTTTGTGGTAATG
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * *
34801525 TTTGTGAAATGGAAACCTTTGTGGCTG-TC
1 TCTGTTAAATGGAAGCCTTTGTGG-TGATC
*****
34801554 TCTGTTAAATGGAAGCC----CCCCCATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * * * *
34801579 TTTGTTAAATGAAAACCTTTGTGGCGATA
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * *
34801608 TTTGTTAAATGGAAGCCTTTGTGATGATG
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * *
34801637 TCTATCAAAAGGAAGCCTTTGTG
1 TCTGTTAAATGGAAGCCTTTGTG
34801660 ACAACTTTTG
Statistics
Matches: 286, Mismatches: 67, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
25 16 0.06
28 2 0.01
29 265 0.93
30 3 0.01
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.37
Consensus pattern (29 bp):
TCTGTTAAATGGAAGCCTTTGTGGTGATC
Found at i:34801651 original size:83 final size:83
Alignment explanation
Indices: 34801493--34801653 Score: 189
Period size: 83 Copynumber: 1.9 Consensus size: 83
34801483 CTTTCTGACT
* * * * * *
34801493 ATCTCTGTTAAATGGAAGCCTTTGTGGTAATGTTTGTGAAATGGAAACCTTTGTGGCTGTCTCTG
1 ATCTCTGTTAAATGAAAACCTTTGTGGCAATATTTGTGAAATGGAAACCTTTGTGGATGTCTCTA
* *
34801558 TTAAATGGAAGCCCCCCC
66 TCAAAAGGAAGCCCCCCC
* * * * *
34801576 ATCTTTGTTAAATGAAAACCTTTGTGGCGATATTTGTTAAATGGAAGCCTTTGT-GATGATGTCT
1 ATCTCTGTTAAATGAAAACCTTTGTGGCAATATTTGTGAAATGGAAACCTTTGTGGATG-TCTCT
34801640 ATCAAAAGGAAGCC
65 ATCAAAAGGAAGCC
34801654 TTTGTGACAA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
82 3 0.05
83 61 0.95
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (83 bp):
ATCTCTGTTAAATGAAAACCTTTGTGGCAATATTTGTGAAATGGAAACCTTTGTGGATGTCTCTA
TCAAAAGGAAGCCCCCCC
Found at i:34802381 original size:58 final size:58
Alignment explanation
Indices: 34802311--34802556 Score: 169
Period size: 58 Copynumber: 4.2 Consensus size: 58
34802301 TATCTGTTAG
* * *
34802311 ATGGAAGCCTTTG-AGTTGATTTCTGTTAAATGAAGGCCT-TTTTGGCTATCTCTATTAA
1 ATGGAAGCCTTTGTAGCT-ATCTCTGTTAAATGAAGG-CTGTTGTGGCTATCTCTATTAA
** * * *
34802369 ATGGGGGCCTTTGTGGCTATCTCTGTTAAATGGAGGCTGTTGTGGCTATCTCTGTTAA
1 ATGGAAGCCTTTGTAGCTATCTCTGTTAAATGAAGGCTGTTGTGGCTATCTCTATTAA
* * * * ** * * *
34802427 ATGGAAGCCTTTGTGGCGATCCCTATTAAATGGAAGTAT-TTTTGGCGATCTCTTTTAA
1 ATGGAAGCCTTTGTAGCTATCTCTGTTAAAT-GAAGGCTGTTGTGGCTATCTCTATTAA
* * * * * * * * *
34802485 CTGGATA-CCTTTCTAACTATCTCTGTTAAATGGAAGCCT-TTGTCGCAATGTTTATTAG
1 ATGGA-AGCCTTTGTAGCTATCTCTGTTAAAT-GAAGGCTGTTGTGGCTATCTCTATTAA
*
34802543 ATGGAAACCTTTGT
1 ATGGAAGCCTTTGT
34802557 GGCTGTCTTT
Statistics
Matches: 146, Mismatches: 37, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
57 3 0.02
58 136 0.93
59 7 0.05
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (58 bp):
ATGGAAGCCTTTGTAGCTATCTCTGTTAAATGAAGGCTGTTGTGGCTATCTCTATTAA
Found at i:34802459 original size:29 final size:29
Alignment explanation
Indices: 34802336--34802668 Score: 191
Period size: 29 Copynumber: 11.7 Consensus size: 29
34802326 TTGATTTCTG
*
34802336 TTAAAT-GAAGGCCTTTTTGGCTATCTCTA
1 TTAAATGGAA-GCCTTTGTGGCTATCTCTA
** *
34802365 TTAAATGGGGGCCTTTGTGGCTATCTCTG
1 TTAAATGGAAGCCTTTGTGGCTATCTCTA
* *
34802394 TTAAATGG-AGGCTGTTGTGGCTATCTCTG
1 TTAAATGGAAGCCT-TTGTGGCTATCTCTA
* *
34802423 TTAAATGGAAGCCTTTGTGGCGATCCCTA
1 TTAAATGGAAGCCTTTGTGGCTATCTCTA
** * * *
34802452 TTAAATGGAAGTATTTTTGGCGATCTCTT
1 TTAAATGGAAGCCTTTGTGGCTATCTCTA
* * ** *
34802481 TTAACTGGATA-CCTTTCTAACTATCTCTG
1 TTAAATGGA-AGCCTTTGTGGCTATCTCTA
* * * *
34802510 TTAAATGGAAGCCTTTGTCGCAATGTTTA
1 TTAAATGGAAGCCTTTGTGGCTATCTCTA
* * * * *
34802539 TTAGATGGAAACCTTTGTGGCTGTCTTTG
1 TTAAATGGAAGCCTTTGTGGCTATCTCTA
* * * * *
34802568 TGAAAGGGAAGCC-----CGCCATC-CTTT
1 TTAAATGGAAGCCTTTGTGGCTATCTC-TA
* * * *
34802592 TTAACTGGAAGCCTTTGTGGCGATCTTTG
1 TTAAATGGAAGCCTTTGTGGCTATCTCTA
*
34802621 TTAAATGGAAGCCTTTGTGGC-AGTCTCTG
1 TTAAATGGAAGCCTTTGTGGCTA-TCTCTA
* * *
34802650 TCAAAAGGAAGCTTTTGTG
1 TTAAATGGAAGCCTTTGTG
34802669 ACATCCTTTG
Statistics
Matches: 232, Mismatches: 59, Indels: 26
0.73 0.19 0.08
Matches are distributed among these distances:
24 15 0.06
28 5 0.02
29 206 0.89
30 6 0.03
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (29 bp):
TTAAATGGAAGCCTTTGTGGCTATCTCTA
Found at i:34802478 original size:87 final size:87
Alignment explanation
Indices: 34802332--34802527 Score: 216
Period size: 87 Copynumber: 2.3 Consensus size: 87
34802322 TGAGTTGATT
* * * ** * *
34802332 TCTGTTAAAT-GAAGGCCTTTTTGGCTATCTCTATTAAATGGGGGCCTTTGTGGCTATCTCTGTT
1 TCTGTTAAATGGAA-GCCTTTGTGGCGATCCCTATTAAATGGAAGCATTTGTGGCGATCTCTGTT
** * **
34802396 AAATGGA-GGCTGTTGTGGCTATC
65 AAATGGATACCT-TTCTAACTATC
* * *
34802419 TCTGTTAAATGGAAGCCTTTGTGGCGATCCCTATTAAATGGAAGTATTTTTGGCGATCTCTTTTA
1 TCTGTTAAATGGAAGCCTTTGTGGCGATCCCTATTAAATGGAAGCATTTGTGGCGATCTCTGTTA
*
34802484 ACTGGATACCTTTCTAACTATC
66 AATGGATACCTTTCTAACTATC
34802506 TCTGTTAAATGGAAGCCTTTGT
1 TCTGTTAAATGGAAGCCTTTGT
34802528 CGCAATGTTT
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
87 86 0.95
88 5 0.05
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.39
Consensus pattern (87 bp):
TCTGTTAAATGGAAGCCTTTGTGGCGATCCCTATTAAATGGAAGCATTTGTGGCGATCTCTGTTA
AATGGATACCTTTCTAACTATC
Found at i:34802630 original size:82 final size:82
Alignment explanation
Indices: 34802510--34802661 Score: 205
Period size: 82 Copynumber: 1.9 Consensus size: 82
34802500 ACTATCTCTG
* * * * * *
34802510 TTAAATGGAAGCCTTTGTCGCAATGTTTATTAGATGGAAACCTTTGTGGCTGTCTTTGTGAAAGG
1 TTAAATGGAAGCCTTTGTCGCAATCTTTATTAAATGGAAACCTTTGTGGCAGTCTCTGTCAAAAG
34802575 GAAGCCCGCCATCCTTT
66 GAAGCCCGCCATCCTTT
* * * * *
34802592 TTAACTGGAAGCCTTTGTGGCGATCTTTGTTAAATGGAAGCCTTTGTGGCAGTCTCTGTCAAAAG
1 TTAAATGGAAGCCTTTGTCGCAATCTTTATTAAATGGAAACCTTTGTGGCAGTCTCTGTCAAAAG
34802657 GAAGC
66 GAAGC
34802662 TTTTGTGACA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 59 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (82 bp):
TTAAATGGAAGCCTTTGTCGCAATCTTTATTAAATGGAAACCTTTGTGGCAGTCTCTGTCAAAAG
GAAGCCCGCCATCCTTT
Found at i:34802680 original size:29 final size:28
Alignment explanation
Indices: 34802598--34802698 Score: 105
Period size: 29 Copynumber: 3.5 Consensus size: 28
34802588 CTTTTTAACT
* *
34802598 GGAAGCCTTTGTGGCGATCTTTGTTAAAT
1 GGAAGCCTTTGTGGC-ATCTTTGTCAAAA
*
34802627 GGAAGCCTTTGTGGCAGTCTCTGTCAAAA
1 GGAAGCCTTTGTGGCA-TCTTTGTCAAAA
* *
34802656 GGAAGCTTTTGTGACATCCTTTGTC-AAA
1 GGAAGCCTTTGTGGCAT-CTTTGTCAAAA
* *
34802684 GGACGCCATTGTGGC
1 GGAAGCCTTTGTGGC
34802699 GAGCCTCTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 16 0.27
29 44 0.73
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (28 bp):
GGAAGCCTTTGTGGCATCTTTGTCAAAA
Found at i:34802754 original size:56 final size:56
Alignment explanation
Indices: 34802598--34802755 Score: 146
Period size: 56 Copynumber: 2.8 Consensus size: 56
34802588 CTTTTTAACT
* * *
34802598 GGAAGCCTTTGTGGCGATCTTTGTTAAATGGAAGCCTTTGTGGC-AGTCTCTGTCAAAA
1 GGAAGCCTTTGTGAC-ATCTTTGTCAAA-GGAAGCC-TTGTGGCGAGTCTCTCTCAAAA
* *
34802656 GGAAGCTTTTGTGACATCCTTTGTCAAAGGACGCCATTGTGGCGAG-C-CTCT-AAAA
1 GGAAGCCTTTGTGACAT-CTTTGTCAAAGGAAGCC-TTGTGGCGAGTCTCTCTCAAAA
*
34802711 GGAAAGCCTTTGTGACTATCTTTG-GAAAGGAATGCCTTCGTGGCG
1 GG-AAGCCTTTGTGAC-ATCTTTGTCAAAGGAA-GCCTT-GTGGCG
34802756 TAATTTGAAG
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
55 14 0.16
56 29 0.34
57 18 0.21
58 24 0.28
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (56 bp):
GGAAGCCTTTGTGACATCTTTGTCAAAGGAAGCCTTGTGGCGAGTCTCTCTCAAAA
Found at i:34803349 original size:29 final size:29
Alignment explanation
Indices: 34803310--34803677 Score: 229
Period size: 29 Copynumber: 12.9 Consensus size: 29
34803300 AGTTTCTATA
34803310 TCTGTTAAATGGAAGCCTTTGTGGTGATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* *
34803339 TCTGTTAAATGGAGGCCTTTTTGGCT-ATC
1 TCTGTTAAATGGAAGCCTTTGTGG-TGATC
* *
34803368 TCTGTTAAATGGAGGCCTTTGTTGCT-ATC
1 TCTGTTAAATGGAAGCCTTTG-TGGTGATC
* *
34803397 TCCGTTAAATGGAGGCCTTTGTGG-GTATC
1 TCTGTTAAATGGAAGCCTTTGTGGTG-ATC
* * ** *
34803426 TCTGCTAAATGGAAGTCGATGTGGCGATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * *
34803455 TCTATTAAAT-TAATGCCTCTT-TGGCGATC
1 TCTGTTAAATGGAA-GCCT-TTGTGGTGATC
* * * * *
34803484 TTTTTTAAATGGAAACCTTTCTGAATG-TC
1 TCTGTTAAATGGAAGCCTTTGTG-GTGATC
* * *
34803513 TATGTTAAATGGAAGCCTTTGTGGTAATG
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * * * *
34803542 TTTGTGAAATAGAAACCTTTGTGGTTG-GC
1 TCTGTTAAATGGAAGCCTTTGTGG-TGATC
* * *
34803571 TCTGTTAAATGGATGCC-----CGTCATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* ** *
34803595 TTTGTTAAATGGAAGTTTTTGTGGCGATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* **
34803624 TTTGTTAAATGGAAGCCTTTGTGGCAATC
1 TCTGTTAAATGGAAGCCTTTGTGGTGATC
* * *
34803653 TCTATCAAAAGGAAGCCTTTGTGGT
1 TCTGTTAAATGGAAGCCTTTGTGGT
34803678 AACTTTTTTC
Statistics
Matches: 260, Mismatches: 61, Indels: 36
0.73 0.17 0.10
Matches are distributed among these distances:
23 1 0.00
24 15 0.06
28 7 0.03
29 228 0.88
30 9 0.03
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.38
Consensus pattern (29 bp):
TCTGTTAAATGGAAGCCTTTGTGGTGATC
Found at i:34803379 original size:58 final size:58
Alignment explanation
Indices: 34803305--34803677 Score: 264
Period size: 58 Copynumber: 6.5 Consensus size: 58
34803295 GTGGTAGTTT
* * *
34803305 CTATATCTGTTAAATGGAAGCCTTTGTGGTGATCTCTGTTAAATGGAGGCCTTTTTGG
1 CTATCTCTGTTAAATGGAAGCCTTTGTGGTGATCTCTGTTAAATGGAAGCCTTTGTGG
* * * *
34803363 CTATCTCTGTTAAATGGAGGCCTTTGTTGCT-ATCTCCGTTAAATGGAGGCCTTTGTGG
1 CTATCTCTGTTAAATGGAAGCCTTTG-TGGTGATCTCTGTTAAATGGAAGCCTTTGTGG
* * * ** * * *
34803421 GTATCTCTGCTAAATGGAAGTCGATGTGGCGATCTCTATTAAAT-TAATGCCTCTT-TGG
1 CTATCTCTGTTAAATGGAAGCCTTTGTGGTGATCTCTGTTAAATGGAA-GCCT-TTGTGG
* * * * * * *
34803479 CGATCTTTTTTAAATGGAAACCTTTCTGAATG-TCTATGTTAAATGGAAGCCTTTGTGG
1 CTATCTCTGTTAAATGGAAGCCTTTGTG-GTGATCTCTGTTAAATGGAAGCCTTTGTGG
* * * * * * * *
34803537 -TAATGTTTGTGAAATAGAAACCTTTGTGGTTG-GCTCTGTTAAATGGATGCC--CGT--
1 CT-ATCTCTGTTAAATGGAAGCCTTTGTGG-TGATCTCTGTTAAATGGAAGCCTTTGTGG
* ** * *
34803591 C-ATCTTTGTTAAATGGAAGTTTTTGTGGCGATCTTTGTTAAATGGAAGCCTTTGTGG
1 CTATCTCTGTTAAATGGAAGCCTTTGTGGTGATCTCTGTTAAATGGAAGCCTTTGTGG
* * * *
34803648 CAATCTCTATCAAAAGGAAGCCTTTGTGGT
1 CTATCTCTGTTAAATGGAAGCCTTTGTGGT
34803678 AACTTTTTTC
Statistics
Matches: 238, Mismatches: 61, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
52 1 0.00
53 37 0.16
55 2 0.01
56 2 0.01
57 6 0.03
58 182 0.76
59 8 0.03
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.38
Consensus pattern (58 bp):
CTATCTCTGTTAAATGGAAGCCTTTGTGGTGATCTCTGTTAAATGGAAGCCTTTGTGG
Found at i:34805346 original size:33 final size:34
Alignment explanation
Indices: 34805299--34805433 Score: 112
Period size: 33 Copynumber: 3.8 Consensus size: 34
34805289 GTTATCCGTT
*
34805299 ATCGGTGGATTCAGCACTTAGCAACCACCAATGA
1 ATCGGTGGAATCAGCACTTAGCAACCACCAATGA
* *
34805333 ATCGG-GGAATCAGCACTTAGCAACCCCTTTCACATTAAAAA
1 ATCGGTGGAATCAGCACTTAGCAACCAC---CA-A-T---GA
* * *
34805374 ATACGGTGGGATCAACAGTTAGCAACCACCAATGA
1 AT-CGGTGGAATCAGCACTTAGCAACCACCAATGA
*
34805409 TTCGG-GGAATCAGCACTTAGCAACC
1 ATCGGTGGAATCAGCACTTAGCAACC
34805434 CCTTGGGGGA
Statistics
Matches: 79, Mismatches: 12, Indels: 21
0.71 0.11 0.19
Matches are distributed among these distances:
33 37 0.47
34 8 0.10
35 2 0.03
36 2 0.03
37 1 0.01
38 2 0.03
39 1 0.01
40 2 0.03
41 3 0.04
42 3 0.04
43 18 0.23
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (34 bp):
ATCGGTGGAATCAGCACTTAGCAACCACCAATGA
Found at i:34805521 original size:102 final size:103
Alignment explanation
Indices: 34805336--34805567 Score: 358
Period size: 102 Copynumber: 2.3 Consensus size: 103
34805326 CCAATGAATC
* * * * *
34805336 GGGGAATCAGCACTTAGCAACCCCTTTCACATTAAAAAATACGGTGGGATCAACAGTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTAAAAAATACGGTGGAATAAACACTTACCAACC
*
34805401 ACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
66 ACCAATGATTCGGGGAATCAACACTTAGCAACCCCTTG
* * *
34805439 GGGGAATCAACACTTAGCAACCCCCTTCACATT-TAAAATACTGTGGAATAAACACTTACCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTAAAAAATACGGTGGAATAAACACTTACCAACC
34805503 ACCAATGATTCGGGGAATCAACACTTAGCAACCCCTTG
66 ACCAATGATTCGGGGAATCAACACTTAGCAACCCCTTG
* *
34805541 GGGAAATCAGCACTGAGCAACCCCCTT
1 GGGGAATCAGCACTTAGCAACCCCCTT
34805568 TATATTCAGT
Statistics
Matches: 117, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
102 86 0.74
103 31 0.26
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTAAAAAATACGGTGGAATAAACACTTACCAACC
ACCAATGATTCGGGGAATCAACACTTAGCAACCCCTTG
Found at i:34805543 original size:26 final size:27
Alignment explanation
Indices: 34805514--34805564 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
34805504 CCAATGATTC
*
34805514 GGGG-AATCAACACTTAGCAACCCCTT
1 GGGGAAATCAACACTGAGCAACCCCTT
*
34805540 GGGGAAATCAGCACTGAGCAACCCC
1 GGGGAAATCAACACTGAGCAACCCC
34805565 CTTTATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.14
Consensus pattern (27 bp):
GGGGAAATCAACACTGAGCAACCCCTT
Found at i:34812855 original size:76 final size:75
Alignment explanation
Indices: 34812724--34812933 Score: 231
Period size: 76 Copynumber: 2.8 Consensus size: 75
34812714 TCCGTTATAT
* * * * * *
34812724 GTGGATTCAACACTTAGCAACCACTAGTGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
1 GTGGAATCAACACATAGCAACCACCAATGAATCGAGGAATCAGCACTTAGCAACCCCTTTCACAT
*
34812789 TCAAAAATACG
66 T-AAAAATACA
* * *
34812800 GTGGAATCAGCACATAGCAACCTCCAATGAATCGAGGAATCAGCACTTAGGAACCCCTTTCACAT
1 GTGGAATCAACACATAGCAACCACCAATGAATCGAGGAATCAGCACTTAGCAACCCCTTTCACAT
* **
34812865 TTACGATACA
66 TAAAAATACA
* * * * * * *
34812875 TTGGGATCAACACTTAGCAACCACTAATGATTCGGGGAATCAGCACTGAGCAACCCCTT
1 GTGGAATCAACACATAGCAACCACCAATGAATCGAGGAATCAGCACTTAGCAACCCCTT
34812934 GAGGGAATCA
Statistics
Matches: 111, Mismatches: 23, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
75 54 0.49
76 57 0.51
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (75 bp):
GTGGAATCAACACATAGCAACCACCAATGAATCGAGGAATCAGCACTTAGCAACCCCTTTCACAT
TAAAAATACA
Found at i:34812957 original size:102 final size:102
Alignment explanation
Indices: 34812835--34813063 Score: 341
Period size: 102 Copynumber: 2.2 Consensus size: 102
34812825 AATGAATCGA
* * * ** * * *
34812835 GGAATCAGCACTTAGGAACCCCTTTCACATTTACGATACATTGGGATCAACACTTAGCAACCACT
1 GGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACAGTGGAATCAACACTTAGCAACCACC
*
34812900 AATGATTCGGGGAATCAGCACTGAGCAACCCCTTGAG
66 AATGATTCGGGGAATCAACACTGAGCAACCCCTTGAG
*
34812937 GGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAACACTTAGCAACCACC
1 GGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACAGTGGAATCAACACTTAGCAACCACC
* *
34813002 AATGATTCGGGGAATCAACACTTAGCAACCCCTTGGG
66 AATGATTCGGGGAATCAACACTGAGCAACCCCTTGAG
*
34813039 GGAATCATCACTTAGCAACCCCCTT
1 GGAATCAACACTTAGCAACCCCCTT
34813064 TATATTCAAT
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 114 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (102 bp):
GGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACAGTGGAATCAACACTTAGCAACCACC
AATGATTCGGGGAATCAACACTGAGCAACCCCTTGAG
Found at i:34814577 original size:29 final size:29
Alignment explanation
Indices: 34814503--34814727 Score: 188
Period size: 29 Copynumber: 7.8 Consensus size: 29
34814493 CTTTGTGGTG
* *
34814503 ATCTCTGTTAAATGGAGGCCTTTTTGGCT
1 ATCTCTGTTAAATGGAGGCCTTTCTGGGT
*
34814532 A-CTTTGTTAAATGGAGGCCTTTCTGGGT
1 ATCTCTGTTAAATGGAGGCCTTTCTGGGT
* * *
34814560 ATCTTTGTTAAATAGAGGCCTTTGTGGGT
1 ATCTCTGTTAAATGGAGGCCTTTCTGGGT
* * *
34814589 ATCTCCGTTATATGGAGGCCTTTGTGGGT
1 ATCTCTGTTAAATGGAGGCCTTTCTGGGT
* *
34814618 TTCTCTGTTAAATGGAAG-CTTT-TGTGGT
1 ATCTCTGTTAAATGGAGGCCTTTCTG-GGT
* *
34814646 GATCTCTGTTAAATGGAAGCCTATCT-GGT
1 -ATCTCTGTTAAATGGAGGCCTTTCTGGGT
* * ** * **
34814675 GATCTTTTTTAAATGGAAACATTTCTGACT
1 -ATCTCTGTTAAATGGAGGCCTTTCTGGGT
* * *
34814705 ATATCTATTAAATGGAAGCCTTT
1 ATCTCTGTTAAATGGAGGCCTTT
34814728 GTGGAATTGT
Statistics
Matches: 163, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
27 2 0.01
28 32 0.20
29 124 0.76
30 4 0.02
31 1 0.01
ACGTcount: A:0.22, C:0.14, G:0.24, T:0.40
Consensus pattern (29 bp):
ATCTCTGTTAAATGGAGGCCTTTCTGGGT
Found at i:34814617 original size:58 final size:58
Alignment explanation
Indices: 34814491--34814667 Score: 207
Period size: 58 Copynumber: 3.1 Consensus size: 58
34814481 GTATCTGAAA
* * *
34814491 GCCTTTGT-GGTGATCTCTGTTAAATGGAGGCCTTTTTGGCTA-CTTTGTTAAATGGAG
1 GCCTTTGTGGGT-ATCTCTGTTAAATGGAGGCCTTTGTGGGTATCTCTGTTAAATGGAG
* * * * *
34814548 GCCTTTCTGGGTATCTTTGTTAAATAGAGGCCTTTGTGGGTATCTCCGTTATATGGAG
1 GCCTTTGTGGGTATCTCTGTTAAATGGAGGCCTTTGTGGGTATCTCTGTTAAATGGAG
* * * *
34814606 GCCTTTGTGGGTTTCTCTGTTAAATGGAAGCTTTTGT-GGTGATCTCTGTTAAATGGAA
1 GCCTTTGTGGGTATCTCTGTTAAATGGAGGCCTTTGTGGGT-ATCTCTGTTAAATGGAG
34814664 GCCT
1 GCCT
34814668 ATCTGGTGAT
Statistics
Matches: 100, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
57 36 0.36
58 64 0.64
ACGTcount: A:0.18, C:0.15, G:0.28, T:0.40
Consensus pattern (58 bp):
GCCTTTGTGGGTATCTCTGTTAAATGGAGGCCTTTGTGGGTATCTCTGTTAAATGGAG
Found at i:34814691 original size:87 final size:86
Alignment explanation
Indices: 34814489--34814691 Score: 223
Period size: 87 Copynumber: 2.3 Consensus size: 86
34814479 CTGTATCTGA
* * *
34814489 AAGCCTTTGTGGTGATCTCTGTTAAATGGAGGCCTTTTTGGCTACTTTGTTAAATGGAGGCCTTT
1 AAGCCTTTGTGGTGATCTCTGTTAAATGGAGGCCTTTTGGGCTACTCTGTTAAATGGAAGCCTTT
*
34814554 CTGGGTATCTTTGTTAAATAG
66 CTGGGTATCTCTGTTAAATAG
* * * * *
34814575 AGGCCTTTGTGG-GTATCTCCGTTATATGGAGGCCTTTGTGGGTTTCTCTGTTAAATGGAAG-CT
1 AAGCCTTTGTGGTG-ATCTCTGTTAAATGGAGGCCTTT-TGGGCTACTCTGTTAAATGGAAGCCT
*
34814638 TT-TGTGGTGATCTCTGTTAAATGG
64 TTCTG-GGT-ATCTCTGTTAAATAG
* * * *
34814662 AAGCCTATCTGGTGATCTTTTTTAAATGGA
1 AAGCCTTTGTGGTGATCTCTGTTAAATGGA
34814692 AACATTTCTG
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
85 3 0.03
86 39 0.41
87 52 0.55
88 1 0.01
ACGTcount: A:0.19, C:0.14, G:0.27, T:0.40
Consensus pattern (86 bp):
AAGCCTTTGTGGTGATCTCTGTTAAATGGAGGCCTTTTGGGCTACTCTGTTAAATGGAAGCCTTT
CTGGGTATCTCTGTTAAATAG
Found at i:34814885 original size:29 final size:29
Alignment explanation
Indices: 34814800--34814870 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
34814790 TTTGTTAAAT
34814800 GGAAGCCTTTGTGGAAATCTCTATCAAAA
1 GGAAGCCTTTGTGGAAATCTCTATCAAAA
34814829 GGAAGCCTTTGTGGAAATCTCTATCAAAA
1 GGAAGCCTTTGTGGAAATCTCTATCAAAA
34814858 GGAAGCCTTTGTG
1 GGAAGCCTTTGTG
34814871 ACAACCTTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (29 bp):
GGAAGCCTTTGTGGAAATCTCTATCAAAA
Found at i:34815639 original size:58 final size:58
Alignment explanation
Indices: 34815568--34815698 Score: 163
Period size: 58 Copynumber: 2.3 Consensus size: 58
34815558 TTTAGTTGAA
* * * ** * *
34815568 CTCTATTAAATGGAAGCTTTTTTTGCTATCTCTATTAAATGGAGGCCATTGTGGCTAT
1 CTCTATTAAATGGAAGCCTTTGTGGCTATCTCTATTAAATGGAACCCATTATGGCAAT
* * * *
34815626 CTCTGTTAAATGGAGGCCTTTGTGGCTATCTCTGTTAAATGGAACCCTTTATGGCAAT
1 CTCTATTAAATGGAAGCCTTTGTGGCTATCTCTATTAAATGGAACCCATTATGGCAAT
34815684 CTCTATTAAATGGAA
1 CTCTATTAAATGGAA
34815699 ACCATTTTGG
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (58 bp):
CTCTATTAAATGGAAGCCTTTGTGGCTATCTCTATTAAATGGAACCCATTATGGCAAT
Found at i:34815714 original size:29 final size:27
Alignment explanation
Indices: 34815544--34815790 Score: 136
Period size: 29 Copynumber: 8.6 Consensus size: 27
34815534 TCTGTATTTG
* *
34815544 TTAAATGGAAGCCTTTTAGTTGAACTCTA
1 TTAAATGGAAGCCTTTT-GGT-ATCTCTA
* *
34815573 TTAAATGGAAGCTTTTTTTGCTATCTCTA
1 TTAAATGGAAGC--CTTTTGGTATCTCTA
* * *
34815602 TTAAATGGAGGCCATTGTGGCTATCTCTG
1 TTAAATGGAAGCC-TTTTGG-TATCTCTA
* *
34815631 TTAAATGGAGGCCTTTGTGGCTATCTCTG
1 TTAAATGGAAGCCTTT-TGG-TATCTCTA
* *
34815660 TTAAATGGAACCCTTTATGGCAATCTCTA
1 TTAAATGGAAGCCTTT-TGG-TATCTCTA
* *
34815689 TTAAATGGAAACCATTTTGGTGATCT-TT
1 TTAAATGGAAGCC-TTTTGGT-ATCTCTA
* * * * *
34815717 TTAACTAGAAACCTTTCTGACTATCTCTG
1 TTAAATGGAAGCCTTT-TG-GTATCTCTA
* * * *
34815746 TTAAGTGGAAGCCTTTGTGGTAATGTTTC
1 TTAAATGGAAGCCTTT-TGGT-ATCTCTA
*
34815775 TTAAATGGAAACCTTT
1 TTAAATGGAAGCCTTT
34815791 GTGCTTGTCT
Statistics
Matches: 176, Mismatches: 31, Indels: 22
0.77 0.14 0.10
Matches are distributed among these distances:
27 3 0.02
28 25 0.14
29 139 0.79
30 5 0.03
31 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (27 bp):
TTAAATGGAAGCCTTTTGGTATCTCTA
Found at i:34815863 original size:29 final size:29
Alignment explanation
Indices: 34815829--34815904 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
34815819 CCATCTTTTC
* * *
34815829 TAAATGGAGGCCTTTGTGGCGATCTTTGT
1 TAAATGGAAGCCTTTGTGGCAATCTCTGT
*
34815858 TAAATGGAAGCCTTTGTGGCAATATCTGT
1 TAAATGGAAGCCTTTGTGGCAATCTCTGT
* *
34815887 TAAAAGTAAGCCTTTGTG
1 TAAATGGAAGCCTTTGTG
34815905 ACAACCTTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (29 bp):
TAAATGGAAGCCTTTGTGGCAATCTCTGT
Found at i:34816800 original size:117 final size:111
Alignment explanation
Indices: 34816636--34816913 Score: 324
Period size: 117 Copynumber: 2.5 Consensus size: 111
34816626 TAGGTATCTC
* * ** * *
34816636 TGTTAAATGGAGGCCTTTGTGGCTATCTCCGTTAAATGG-AGTCCTTTGTGGGCATCACTGTTAA
1 TGTTAAATGGAAGCCTTTGTGACTATCTTTGTTAAATGGAAG-CCTTTGTGGCCATCACTGTGAA
* * *
34816700 ATGGAAGCCTTTGTGGCTATCTCTATTAAATGGAAGCCTTTTTGGCGATGTTT
65 ATGGAAACCTTTGTGGCTATCTCTATTAAATGGAAG-C--TCT--CCAT-TTT
* * * ***
34816753 TTTTAAATGGAAACCTTTCTGACTATCTTTGTTAAATGGAAGCCTTTGTGGCCATGTTTGTGAAA
1 TGTTAAATGGAAGCCTTTGTGACTATCTTTGTTAAATGGAAGCCTTTGTGGCCATCACTGTGAAA
* *
34816818 TGGAAACCTTTGTGGCTGTCTCTGTTAAATGGAAGCTCTCCATTTT
66 TGGAAACCTTTGTGGCTATCTCTATTAAATGGAAGCTCTCCATTTT
*
34816864 TGTTAAATGGAAGCCTTTGTGACGATCTTTGTTAAATGGAAGCCTTTGTG
1 TGTTAAATGGAAGCCTTTGTGACTATCTTTGTTAAATGGAAGCCTTTGTG
34816914 ATGATCTCTA
Statistics
Matches: 139, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
111 49 0.35
112 3 0.02
114 2 0.01
116 1 0.01
117 82 0.59
118 2 0.01
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.38
Consensus pattern (111 bp):
TGTTAAATGGAAGCCTTTGTGACTATCTTTGTTAAATGGAAGCCTTTGTGGCCATCACTGTGAAA
TGGAAACCTTTGTGGCTATCTCTATTAAATGGAAGCTCTCCATTTT
Found at i:34816914 original size:29 final size:29
Alignment explanation
Indices: 34816547--34816922 Score: 302
Period size: 29 Copynumber: 13.1 Consensus size: 29
34816537 AGTTTCTGTA
* *
34816547 TCTGTTAAATGGAAGCTTTTGTGGTGATC
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
* * * * *
34816576 TCTATTAAATAGAGGCCTTTTTGGGGATC
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
* * *
34816605 TCTGTTAAAAGGAGGCCTTTGTAGG-TATC
1 TCTGTTAAATGGAAGCCTTTGT-GGCGATC
* *
34816634 TCTGTTAAATGGAGGCCTTTGTGGCTATC
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
*
34816663 TCCGTTAAATGG-AGTCCTTTGTGG-GCATC
1 TCTGTTAAATGGAAG-CCTTTGTGGCG-ATC
* *
34816692 ACTGTTAAATGGAAGCCTTTGTGGCTATC
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
* * *
34816721 TCTATTAAATGGAAGCCTTTTTGGCGATGT
1 TCTGTTAAATGGAAGCCTTTGTGGCGAT-C
* * * * * *
34816751 TTTTTTAAATGGAAACCTTTCTGACTATC
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
* * *
34816780 TTTGTTAAATGGAAGCCTTTGTGGCCATG
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
* * *
34816809 TTTGTGAAATGGAAACCTTTGTGGCTG-TC
1 TCTGTTAAATGGAAGCCTTTGTGGC-GATC
* * *
34816838 TCTGTTAAATGGAAG-C--TCT--CCATT
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
* *
34816862 TTTGTTAAATGGAAGCCTTTGTGACGATC
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
* **
34816891 TTTGTTAAATGGAAGCCTTTGTGATGATC
1 TCTGTTAAATGGAAGCCTTTGTGGCGATC
34816920 TCT
1 TCT
34816923 ATCGAAAGGA
Statistics
Matches: 281, Mismatches: 52, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
24 16 0.06
25 1 0.00
26 2 0.01
27 2 0.01
28 4 0.01
29 230 0.82
30 26 0.09
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (29 bp):
TCTGTTAAATGGAAGCCTTTGTGGCGATC
Found at i:34816959 original size:111 final size:110
Alignment explanation
Indices: 34816750--34816959 Score: 242
Period size: 111 Copynumber: 1.9 Consensus size: 110
34816740 TTTGGCGATG
* * * * *
34816750 TTTTTTTAAATGGAAACCTTTCTGACTATCTTTGTTAAATGGAAGCCTTTGTGGCCATGTTTGTG
1 TTTTTTTAAATGGAAACCTTTCTGACGATCTTTGTTAAATGGAAGCCTTTGTGACCATCTCTATG
* *** *
34816815 AAATGGAAACCTTTGTGGCTGTCTCTGTTAAATGGAAGCTCTCCA
66 AAATGGAAACCTTTGTGACAAACTCTGTCAAATGGAAGCTCTCCA
* * **
34816860 TTTTTGTTAAATGGAAGCCTTTGTGACGATCTTTGTTAAATGGAAGCCTTTGTGATGATCTCTAT
1 TTTTT-TTAAATGGAAACCTTTCTGACGATCTTTGTTAAATGGAAGCCTTTGTGACCATCTCTAT
** *
34816925 CGAAA-GGATGCCTTTGTGACAAACTTTGTCAAATG
65 -GAAATGGAAACCTTTGTGACAAACTCTGTCAAATG
34816960 ATGCCATTGT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
110 5 0.06
111 72 0.89
112 4 0.05
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (110 bp):
TTTTTTTAAATGGAAACCTTTCTGACGATCTTTGTTAAATGGAAGCCTTTGTGACCATCTCTATG
AAATGGAAACCTTTGTGACAAACTCTGTCAAATGGAAGCTCTCCA
Found at i:34817626 original size:29 final size:29
Alignment explanation
Indices: 34817593--34817810 Score: 117
Period size: 29 Copynumber: 7.5 Consensus size: 29
34817583 TATCTGTTAC
*
34817593 ATGGAAGCCTTTGAGTTGATCTCTATTAA
1 ATGGAAGCCTTTGTGTTGATCTCTATTAA
*
34817622 ATGGAGGCCTTT-T-TTGGCTATCTCTATTAA
1 ATGGAAGCCTTTGTGTT-G--ATCTCTATTAA
* * *
34817652 ATGGAGGCCTTTGTGACT-ATCTCTGTTAA
1 ATGGAAGCCTTTGTG-TTGATCTCTATTAA
* * * *
34817681 AT-GCAGTCTTT-TGTCGCTATCTCTGTTAA
1 ATGGAAGCCTTTGTGTTG--ATCTCTATTAA
** *
34817710 ATGGAAGCCTTTGTGGCGATCCCTATTAA
1 ATGGAAGCCTTTGTGTTGATCTCTATTAA
** * * *
34817739 ATGGAAGTATTTCTGGCT-ATCTCTTTTAA
1 ATGGAAGCCTTTGT-GTTGATCTCTATTAA
* * * *
34817768 CTGGAAACCTTTCTGACT-ATCTCTATTAA
1 ATGGAAGCCTTTGTG-TTGATCTCTATTAA
*
34817797 ATGGAATCCTTTGT
1 ATGGAAGCCTTTGT
34817811 CGCAATGTTT
Statistics
Matches: 147, Mismatches: 29, Indels: 26
0.73 0.14 0.13
Matches are distributed among these distances:
27 4 0.03
28 8 0.05
29 98 0.67
30 31 0.21
31 5 0.03
33 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (29 bp):
ATGGAAGCCTTTGTGTTGATCTCTATTAA
Found at i:34817720 original size:58 final size:58
Alignment explanation
Indices: 34817585--34817837 Score: 224
Period size: 58 Copynumber: 4.3 Consensus size: 58
34817575 AGTTTCTGTA
* * * * * *
34817585 TCTGTTACATGGAAGCCTTTGAG-TTGATCTCTATTAAATGGAGGCCTTTTTTGGCTATC
1 TCTGTTAAATGGAAGCCTTTGTGACT-ATCTCTATTAAATGGA-GTCTTTTGTCGCTATC
* * * *
34817644 TCTATTAAATGGAGGCCTTTGTGACTATCTCTGTTAAATGCAGTCTTTTGTCGCTATC
1 TCTGTTAAATGGAAGCCTTTGTGACTATCTCTATTAAATGGAGTCTTTTGTCGCTATC
* * * *
34817702 TCTGTTAAATGGAAGCCTTTGTGGCGATCCCTATTAAATGGAAGTATTTCTG--GCTATC
1 TCTGTTAAATGGAAGCCTTTGTGACTATCTCTATTAAATGG-AGTCTTT-TGTCGCTATC
* * * * * * * *
34817760 TCTTTTAACTGGAAACCTTTCTGACTATCTCTATTAAATGGAATCCTTTGTCGCAATG
1 TCTGTTAAATGGAAGCCTTTGTGACTATCTCTATTAAATGGAGTCTTTTGTCGCTATC
* * *
34817818 TTTGTTAGATGGAAACCTTT
1 TCTGTTAAATGGAAGCCTTT
34817838 ATCACTTTCT
Statistics
Matches: 155, Mismatches: 34, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
56 2 0.01
57 4 0.03
58 107 0.69
59 39 0.25
60 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (58 bp):
TCTGTTAAATGGAAGCCTTTGTGACTATCTCTATTAAATGGAGTCTTTTGTCGCTATC
Found at i:34817949 original size:29 final size:29
Alignment explanation
Indices: 34817881--34817966 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 29
34817871 TTTTTTAAAT
* * * *
34817881 GGAAGCCTTTGTGGCGATCTTTGTTAAAT
1 GGAAACCTTTGTGGCAATCTTTGTCAAAA
*
34817910 GGAAACCTTTGTGGCAATCTCTGTCAAAA
1 GGAAACCTTTGTGGCAATCTTTGTCAAAA
* *
34817939 GG-AACCTTTTGTGACAACCTTTGTCAAA
1 GGAAACC-TTTGTGGCAATCTTTGTCAAA
34817967 GGACGCCATT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 4 0.08
29 44 0.92
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (29 bp):
GGAAACCTTTGTGGCAATCTTTGTCAAAA
Found at i:34818632 original size:29 final size:29
Alignment explanation
Indices: 34818597--34818989 Score: 229
Period size: 29 Copynumber: 13.7 Consensus size: 29
34818587 TTTATATCTT
34818597 TTAAATGGAAGCCTTTGTGGTGATCTCTG
1 TTAAATGGAAGCCTTTGTGGTGATCTCTG
*
34818626 TTAAATGGAGGCCTTT-TCGGCT-ATCTCTG
1 TTAAATGGAAGCCTTTGT-GG-TGATCTCTG
* * *
34818655 TTAAATGGAGGCTTTTGTGGCT-ATCTTTG
1 TTAAATGGAAGCCTTTGTGG-TGATCTCTG
* * *
34818684 TTAAATTGAGGCCTTTGTGGCT-ATCTCCG
1 TTAAATGGAAGCCTTTGTGG-TGATCTCTG
* * *
34818713 TTAGATGGAGGCCTTTGTGG-GTATCTCCG
1 TTAAATGGAAGCCTTTGTGGTG-ATCTCTG
* *
34818742 TTAAATGGAAGCCGTTGTGGCGATCTCTAG
1 TTAAATGGAAGCCTTTGTGGTGATCTCT-G
** * * *
34818772 -TAAATTAAAGCCTCTT-TGGCGATCTTTT
1 TTAAATGGAAGCCT-TTGTGGTGATCTCTG
* * * *
34818800 TTAAATGGAAACCTTTCTGACT-ATCTATG
1 TTAAATGGAAGCCTTTGTG-GTGATCTCTG
* * *
34818829 TTAAATGGAAGCCTTTGTGGTAATGTTTG
1 TTAAATGGAAGCCTTTGTGGTGATCTCTG
* * * *
34818858 TGAAATGGAAACCTTTGTGGCTG-GCTCAG
1 TTAAATGGAAGCCTTTGTGG-TGATCTCTG
** *
34818887 TTAAATGGAAGCC----T-GCCATCTTTG
1 TTAAATGGAAGCCTTTGTGGTGATCTCTG
* * * *
34818911 TTAAATGGAAGCTTTTGTGGCGATCTTTT
1 TTAAATGGAAGCCTTTGTGGTGATCTCTG
* ** * *
34818940 TTAAACGGAAGCCTTTGTGGCAACCTCTC
1 TTAAATGGAAGCCTTTGTGGTGATCTCTG
* *
34818969 TCAAAAGGAAGCCTTTGTGGT
1 TTAAATGGAAGCCTTTGTGGT
34818990 AACCTTTGTC
Statistics
Matches: 289, Mismatches: 56, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
24 16 0.06
25 1 0.00
28 5 0.02
29 260 0.90
30 7 0.02
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (29 bp):
TTAAATGGAAGCCTTTGTGGTGATCTCTG
Found at i:34818688 original size:87 final size:86
Alignment explanation
Indices: 34818597--34818960 Score: 305
Period size: 87 Copynumber: 4.2 Consensus size: 86
34818587 TTTATATCTT
*
34818597 TTAAATGGAAGCCTTTGTGG-TGATCTCTGTTAAATGGAGGCCTTTTCGGCTATCTCTGTTAAAT
1 TTAAATGGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCC-TTT-GGCTATCTCTGTTAAAT
* * *
34818661 GGAGGCTTTTGTGGCTATCTTTG
64 GGAAGCCTTTGTGGCGATCTTTG
* * * * * * *
34818684 TTAAATTGAGGCCTTTGTGGCT-ATCTCCGTTAGATGGAGGCCTTTGTGGGTATCTCCGTTAAAT
1 TTAAATGGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCC-TT-TGGCTATCTCTGTTAAAT
* *
34818748 GGAAGCCGTTGTGGCGATCTCTAG
64 GGAAGCCTTTGTGGCGATCT-TTG
** * * * * *
34818772 -TAAATTAAAGCCTCTT-TGGC-GATCTTTTTTAAATGGAAACCTTTCTGACTATCTATGTTAAA
1 TTAAATGGAAGCCT-TTGTGGCTGATCTCTGTTAAATGGAAGCC-TT-TGGCTATCTCTGTTAAA
** *
34818834 TGGAAGCCTTTGTGGTAATGTTTG
63 TGGAAGCCTTTGTGGCGATCTTTG
* * * * * *
34818858 TGAAATGGAAACCTTTGTGGCTG-GCTCAGTTAAATGGAAGCC--T-GCCATCTTTGTTAAATGG
1 TTAAATGGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCCTTTGGCTATCTCTGTTAAATGG
* *
34818919 AAGCTTTTGTGGCGATCTTTT
66 AAGCCTTTGTGGCGATCTTTG
*
34818940 TTAAACGGAAGCCTTTGTGGC
1 TTAAATGGAAGCCTTTGTGGC
34818961 AACCTCTCTC
Statistics
Matches: 220, Mismatches: 49, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
82 49 0.22
83 1 0.00
86 4 0.02
87 159 0.72
88 7 0.03
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (86 bp):
TTAAATGGAAGCCTTTGTGGCTGATCTCTGTTAAATGGAAGCCTTTGGCTATCTCTGTTAAATGG
AAGCCTTTGTGGCGATCTTTG
Found at i:34818993 original size:29 final size:28
Alignment explanation
Indices: 34818946--34819017 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
34818936 TTTTTTAAAC
34818946 GGAAGCCTTTGTGGCAACCTCTCTCAAAA
1 GGAAGCCTTTGTGGCAACCTCTCTC-AAA
* * *
34818975 GGAAGCCTTTGTGGTAACCTTTGTCAAA
1 GGAAGCCTTTGTGGCAACCTCTCTCAAA
* *
34819003 GGACGCCATTGTGGC
1 GGAAGCCTTTGTGGC
34819018 GAGTCTCTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 15 0.41
29 22 0.59
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (28 bp):
GGAAGCCTTTGTGGCAACCTCTCTCAAA
Found at i:34819014 original size:28 final size:29
Alignment explanation
Indices: 34818946--34819033 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
34818936 TTTTTTAAAC
*
34818946 GGAAGCCTTTGTGGCAACCTCTCTCAAAA
1 GGAAGCCATTGTGGCAACCTCTCTCAAAA
* * * *
34818975 GGAAGCCTTTGTGGTAACCTTTGTC-AAA
1 GGAAGCCATTGTGGCAACCTCTCTCAAAA
* * *
34819003 GGACGCCATTGTGGCGA-GTCTCT-AAAA
1 GGAAGCCATTGTGGCAACCTCTCTCAAAA
34819030 GGAA
1 GGAA
34819034 AGCCTCAGTG
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
27 9 0.19
28 16 0.34
29 22 0.47
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (29 bp):
GGAAGCCATTGTGGCAACCTCTCTCAAAA
Found at i:34819067 original size:28 final size:28
Alignment explanation
Indices: 34819027--34819096 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
34819017 CGAGTCTCTA
34819027 AAAGGAAAGCCTC-AGTGACTATCTTTGG
1 AAAGGAAAGCCTCTA-TGACTATCTTTGG
34819055 AAAGGAAAGCCTCTATGACTATCTTTGG
1 AAAGGAAAGCCTCTATGACTATCTTTGG
*
34819083 AAAGGAATGCCTCT
1 AAAGGAAAGCCTCT
34819097 GTGGCATTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 39 0.98
29 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (28 bp):
AAAGGAAAGCCTCTATGACTATCTTTGG
Done.