Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 146 of 187
Found at i:43625300 original size:14 final size:14
Alignment explanation
Indices: 43625263--43625301 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
43625253 TTTTCTCTCT
*
43625263 TTTTTCCTTCCTTC
1 TTTTTCCTTCTTTC
43625277 TTTTT-CTTCTTTC
1 TTTTTCCTTCTTTC
43625290 TTTTTCCTTCTT
1 TTTTTCCTTCTT
43625302 CGTTCGGCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTCCTTCTTTC
Found at i:43625435 original size:8 final size:8
Alignment explanation
Indices: 43625413--43625453 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
43625403 TTTCTTTCCC
43625413 TTCTCTTT
1 TTCTCTTT
43625421 TTCCTCTTT
1 TT-CTCTTT
43625430 TTCTCTTT
1 TTCTCTTT
*
43625438 TTTTCTTT
1 TTCTCTTT
43625446 TTCT-TTT
1 TTCTCTTT
43625453 T
1 T
43625454 CTATTCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 4 0.13
8 18 0.60
9 8 0.27
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (8 bp):
TTCTCTTT
Found at i:43626105 original size:59 final size:60
Alignment explanation
Indices: 43626036--43626165 Score: 169
Period size: 59 Copynumber: 2.2 Consensus size: 60
43626026 AAGATGTAAT
* * *
43626036 TTTTAG-AAAGTTTAAGGG-TTAAAGTGA-AATTTTGAGAAAGTTTAAGGGTTGAAATGTAA
1 TTTTAGAAAAGTTT-AGGGTTTAAACT-ATAATTTTGAGAAAGTTTAAGGGTTAAAATGCAA
* *
43626095 -TTTAGAAAAGTTTAGGGTTTGAACTATAATTTTGAGAAAGTTTAGGGGTTAAAATGCAA
1 TTTTAGAAAAGTTTAGGGTTTAAACTATAATTTTGAGAAAGTTTAAGGGTTAAAATGCAA
43626154 TTTTAGAAAAGT
1 TTTTAGAAAAGT
43626166 CAAAATGCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
58 10 0.16
59 41 0.66
60 11 0.18
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.36
Consensus pattern (60 bp):
TTTTAGAAAAGTTTAGGGTTTAAACTATAATTTTGAGAAAGTTTAAGGGTTAAAATGCAA
Found at i:43626165 original size:30 final size:30
Alignment explanation
Indices: 43626029--43626165 Score: 131
Period size: 30 Copynumber: 4.6 Consensus size: 30
43626019 TAGGGCCAAG
43626029 ATGTAATTTTTAG-AAAGTTTAAGGGTTAAA
1 ATGTAA-TTTTAGAAAAGTTTAAGGGTTAAA
* * *
43626059 GTGAAATTTT-GAGAAAGTTTAAGGGTTGAA
1 ATGTAATTTTAGA-AAAGTTTAAGGGTTAAA
*
43626089 ATGTAA-TTTAGAAAAGTTT-AGGGTTTGAA
1 ATGTAATTTTAGAAAAGTTTAAGGG-TTAAA
* * *
43626118 CTATAATTTT-GAGAAAGTTTAGGGGTTAAA
1 ATGTAATTTTAGA-AAAGTTTAAGGGTTAAA
*
43626148 ATGCAATTTTAGAAAAGT
1 ATGTAATTTTAGAAAAGT
43626166 CAAAATGCAA
Statistics
Matches: 87, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
28 5 0.06
29 25 0.29
30 52 0.60
31 5 0.06
ACGTcount: A:0.39, C:0.01, G:0.23, T:0.36
Consensus pattern (30 bp):
ATGTAATTTTAGAAAAGTTTAAGGGTTAAA
Found at i:43626674 original size:78 final size:78
Alignment explanation
Indices: 43626430--43627431 Score: 1122
Period size: 78 Copynumber: 13.0 Consensus size: 78
43626420 CAAAAATCAA
* * *
43626430 AAATACCTCGACATGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAA
1 AAATACCTCGGCATG-G-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA
* * *
43626494 ATATGAA-TT-GAA-
64 ACATAAATTTAAAAG
* **
43626506 AAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
*
43626570 AGAAATTTAAAAG
66 ATAAATTTAAAAG
* * * *
43626583 AAATACCTCGGCATGGTCCAAGGCTAAACTTACCTCTCGCAATATGAGTTTATTTTTTGAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
43626648 ATAAATTTAAAAG
66 ATAAATTTAAAAG
* * * *
43626661 AAATACCTTGGCATGGTCCAAGGCTCAACTCACCTCTCACAATATGAATTGATTTTTTTGAAAAA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAA
43626726 CATAAATTTAAAAG
65 CATAAATTTAAAAG
43626740 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
43626805 ATAAATTTAAAAG
66 ATAAATTTAAAAG
* *
43626818 AAATATCTCAGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAA
43626883 CATAAATTTAAAAG
65 CATAAATTTAAAAG
43626897 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
43626962 ATAAATTTAAAAG
66 ATAAATTTAAAAG
* **
43626975 AAATACCTCGGCATGGTCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTCAAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
43627040 ATAAATTTAAAAG
66 ATAAATTTAAAAG
* *
43627053 AAATATCTCGGCATGGTCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTTTATGAA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT-TGAA
* * *
43627118 AAATAGAAATTTAAAAAA
62 AAACATAAATTT-AAAAG
* * * * * **
43627136 AAATACCTCAGC-TTGACTCGAGGCTCAACTCACCTCT-GTATTATGAGTTGA-----AAAAAAG
1 AAATACCTCGGCATGGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-
43627194 ACATAAA-TT--AA-
64 ACATAAATTTAAAAG
* ** * * ****
43627205 AAATACCTCAGCATGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTAAAAAAAAGA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-A
43627269 CATAAA-TT--AA-
65 CATAAATTTAAAAG
* * ** * * ***
43627279 AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTAAAAAAAAA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--TTGAAAA
43627343 GACATAAA-TT--AA-
64 -ACATAAATTTAAAAG
* * ** * *
43627355 AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAAA
* *
43627419 CAAAAATTGAAAA
65 CATAAATTTAAAA
43627432 ATATAATTCT
Statistics
Matches: 839, Mismatches: 61, Indels: 51
0.88 0.06 0.05
Matches are distributed among these distances:
69 45 0.05
70 4 0.00
73 6 0.01
74 130 0.15
75 8 0.01
76 89 0.11
77 47 0.06
78 296 0.35
79 150 0.18
81 5 0.01
82 27 0.03
83 32 0.04
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (78 bp):
AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
ATAAATTTAAAAG
Found at i:43626758 original size:157 final size:156
Alignment explanation
Indices: 43626430--43627431 Score: 1122
Period size: 157 Copynumber: 6.5 Consensus size: 156
43626420 CAAAAATCAA
* * *
43626430 AAATACCTCGACATGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAA
1 AAATACCTCGGCATG-G-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA
* * * * **
43626494 ATATGAA-TT-GAA-AAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
64 ACATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
43626556 GA-TTTTTGAAAAACAGAAATTTAAAAG
129 GATTTTTTGAAAAACATAAATTTAAAAG
* * * *
43626583 AAATACCTCGGCATGGTCCAAGGCTAAACTTACCTCTCGCAATATGAGTTTATTTTTTGAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
* * * *
43626648 ATAAATTTAAAAGAAATACCTTGGCATGGTCCAAGGCTCAACTCACCTCTCACAATATGAATTGA
66 ATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
43626713 TTTTTTTGAAAAACATAAATTTAAAAG
131 -TTTTTTGAAAAACATAAATTTAAAAG
43626740 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
* *
43626805 ATAAATTTAAAAGAAATATCTCAGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
66 ATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
43626870 TTTTTTTGAAAAACATAAATTTAAAAG
131 -TTTTTTGAAAAACATAAATTTAAAAG
43626897 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
*
43626962 ATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACATCTCGCAATATGAGTTGA
66 ATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
43627027 TTTTTCAAAAAACATAAATTTAAAAG
131 TTTTTTGAAAAACATAAATTTAAAAG
* *
43627053 AAATATCTCGGCATGGTCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTTTATGAA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT-TGAA
* * * * * * * *
43627118 AAATAGAAATTTAAAAAAAAATACCTCAGC-TTGACTCGAGGCTCAACTCACCTCT-GTATTATG
62 AAACATAAATTT-AAAAGAAATACCTCGGCATGGTC-CGAGGCTCAACTCACCTCTCGCAATATG
**
43627181 AGTTGA-----AAAAAAGACATAAA-TT--AA-
125 AGTTGATTTTTTGAAAA-ACATAAATTTAAAAG
* ** * * ****
43627205 AAATACCTCAGCATGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTAAAAAAAAGA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-A
* * ** * *
43627269 CATAAA-TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTG
65 CATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
***
43627329 ATTTTAAAAAAAAAGACATAAA-TT--AA-
130 ATTTT--TTGAAAA-ACATAAATTTAAAAG
* * ** * *
43627355 AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAA
1 AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAAA
* *
43627419 CAAAAATTGAAAA
65 CATAAATTTAAAA
43627432 ATATAATTCT
Statistics
Matches: 756, Mismatches: 67, Indels: 52
0.86 0.08 0.06
Matches are distributed among these distances:
143 45 0.06
144 4 0.01
147 6 0.01
148 8 0.01
150 77 0.10
151 47 0.06
152 49 0.06
153 20 0.03
154 2 0.00
155 52 0.07
156 81 0.11
157 298 0.39
159 5 0.01
160 29 0.04
161 33 0.04
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (156 bp):
AAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC
ATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTGAAAAACATAAATTTAAAAG
Found at i:43626862 original size:235 final size:234
Alignment explanation
Indices: 43626452--43627431 Score: 1096
Period size: 235 Copynumber: 4.2 Consensus size: 234
43626442 ATGTGCCCCG
* * * *
43626452 AGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAAATATGAA-TT-GAA-AAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAATACC
* ** *
43626513 TCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT
66 TCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATT
* * * * *
43626577 TAAAAGAAATACCTCGGCATGGTCCAAGGCTAAACTTACCTCTCGCAATATGAGTTTATTTTTTG
131 TAAAAGAAATATCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
43626642 AAAAACATAAATTTAAAAGAAATACCTTGGCATGGTCCA
196 AAAAACATAAATTTAAAAGAAATACCTCGGCATGGTCCA
* *
43626681 AGGCTCAACTCACCTCTCACAATATGAATTGATTTTTTTGAAAAACATAAATTTAAAAGAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTTAAAAGAAATAC
43626746 CTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAAT
65 CTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAAT
*
43626811 TTAAAAGAAATATCTCAGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
130 TTAAAAGAAATATCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
43626876 TGAAAAACATAAATTTAAAAGAAATACCTCGGCATGGTCCG
194 TGAAAAACATAAATTTAAAAGAAATACCTCGGCATGGTCCA
43626917 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAATACC
* **
43626982 TCGGCATGGTCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTCAAAAAACATAAATT
66 TCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATT
*
43627047 TAAAAGAAATATCTCGGCATGGTCCGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTT
131 TAAAAGAAATATCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTT
* * * * * * *
43627112 TATGAAAAATAGAAATTTAAAAAAAAATACCTCAGC-TTGACTCG
193 T-TGAAAAACATAAATTT-AAAAGAAATACCTCGGCATGGTC-CA
* * **
43627156 AGGCTCAACTCACCTCT-GTATTATGAGTTGA-----AAAAAAGACATAAA-TT--AA-AAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-ACATAAATTTAAAAGAAATAC
* ** * * ****
43627211 CTCAGCATGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTAAAAAAAAGACATAAA
65 CTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-ACATAAA
* * * ** * *
43627275 -TT--AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTA
129 TTTAAAAGAAATATCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-
*** * * ** *
43627335 AAAAAAAAGACATAAA-TT--AA-AAATACCTCAGCGTGACCCG
193 -TTGAAAA-ACATAAATTTAAAAGAAATACCTCGGCATGGTCCA
* * * *
43627375 AGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAACAAAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAAACATAAATTTAAAA
43627432 ATATAATTCT
Statistics
Matches: 660, Mismatches: 64, Indels: 56
0.85 0.08 0.07
Matches are distributed among these distances:
219 45 0.07
220 4 0.01
222 4 0.01
223 6 0.01
224 11 0.02
225 17 0.03
226 31 0.05
227 4 0.01
229 50 0.08
230 41 0.06
231 17 0.03
232 2 0.00
233 8 0.01
234 56 0.08
235 221 0.33
236 74 0.11
237 6 0.01
238 29 0.04
239 34 0.05
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (234 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAATACC
TCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATT
TAAAAGAAATATCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAACATAAATTTAAAAGAAATACCTCGGCATGGTCCA
Found at i:43628330 original size:9 final size:9
Alignment explanation
Indices: 43628318--43628356 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
43628308 CTTTTCTTCC
43628318 TTTTTGTTT
1 TTTTTGTTT
43628327 TTTTTGTTT
1 TTTTTGTTT
*
43628336 TTGTT-TTT
1 TTTTTGTTT
43628344 TTTTTGTTT
1 TTTTTGTTT
43628353 TTTT
1 TTTT
43628357 AGGCATAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:43628336 original size:15 final size:15
Alignment explanation
Indices: 43628318--43628346 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
43628308 CTTTTCTTCC
43628318 TTTTTGTTTTTTTTG
1 TTTTTGTTTTTTTTG
43628333 TTTTTGTTTTTTTT
1 TTTTTGTTTTTTTT
43628347 TTGTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (15 bp):
TTTTTGTTTTTTTTG
Found at i:43639380 original size:19 final size:19
Alignment explanation
Indices: 43639358--43639435 Score: 59
Period size: 19 Copynumber: 4.1 Consensus size: 19
43639348 AACACGAGAA
*
43639358 TTTTGAAGCACGAAATTTT
1 TTTTAAAGCACGAAATTTT
* * *
43639377 TTTTAAAAGAACAAAAATTT
1 TTTT-AAAGCACGAAATTTT
* *
43639397 TTTTAAAACACGAAAATTT
1 TTTTAAAGCACGAAATTTT
**
43639416 TTGCAAA-CACGAGAATTTT
1 TTTTAAAGCACGA-AATTTT
43639435 T
1 T
43639436 AAAACACAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
18 5 0.11
19 27 0.57
20 15 0.32
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.37
Consensus pattern (19 bp):
TTTTAAAGCACGAAATTTT
Found at i:43639399 original size:20 final size:19
Alignment explanation
Indices: 43639374--43639417 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
43639364 AGCACGAAAT
43639374 TTTTTTTAAAAGAACAAAAA
1 TTTTTTTAAAA-AACAAAAA
* *
43639394 TTTTTTTAAAACACGAAAA
1 TTTTTTTAAAAAACAAAAA
43639413 TTTTT
1 TTTTT
43639418 GCAAACACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (19 bp):
TTTTTTTAAAAAACAAAAA
Found at i:43639466 original size:33 final size:34
Alignment explanation
Indices: 43639396--43639597 Score: 118
Period size: 35 Copynumber: 5.6 Consensus size: 34
43639386 AACAAAAATT
*
43639396 TTTTTAAAACACGAAAATTTTTGCAAACACGAGAA
1 TTTTTAAAACAC-AAAAATTTTGCAAACACGAGAA
*
43639431 TTTTTAAAACACAAAAATTTTG-AAACACGATAA
1 TTTTTAAAACACAAAAATTTTGCAAACACGAGAA
* ** ** * *
43639464 TTTTTGAAACACGAGAATTTTTTTTAAAAACGCAAAA
1 TTTTTAAAACAC-A-AAAATTTTGCAAACACG-AGAA
* * *
43639501 TTTTTTTTTTAAAACACGAAAATTTTGGAAACACGGGAA
1 -----TTTTTAAAACACAAAAATTTTGCAAACACGAGAA
* * * * * *
43639540 TTGTTGAAAACACGAAAATTTTTGAAAATATGAAAA
1 TT-TTTAAAACAC-AAAAATTTTGCAAACACGAGAA
*
43639576 TTTTTGAAAACACGAAAATTTT
1 TTTTT-AAAACACAAAAATTTT
43639598 TGAAACATAG
Statistics
Matches: 127, Mismatches: 28, Indels: 24
0.71 0.16 0.13
Matches are distributed among these distances:
33 21 0.17
34 12 0.09
35 36 0.28
36 30 0.24
37 3 0.02
39 2 0.02
40 12 0.09
42 11 0.09
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.33
Consensus pattern (34 bp):
TTTTTAAAACACAAAAATTTTGCAAACACGAGAA
Found at i:43639494 original size:21 final size:21
Alignment explanation
Indices: 43639470--43639526 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
43639460 ATAATTTTTG
*
43639470 AAACACGAGAATTTTTTTTAA
1 AAACACGAAAATTTTTTTTAA
* *
43639491 AAACGC-AAAATTTTTTTTTTA
1 AAACACGAAAA-TTTTTTTTAA
43639512 AAACACGAAAATTTT
1 AAACACGAAAATTTT
43639527 GGAAACACGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 23 0.77
22 4 0.13
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.39
Consensus pattern (21 bp):
AAACACGAAAATTTTTTTTAA
Found at i:43639509 original size:22 final size:22
Alignment explanation
Indices: 43639464--43639526 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
43639454 AACACGATAA
* *
43639464 TTTTTGAAACACGAGAA--TTT
1 TTTTTAAAACACGAAAATTTTT
43639484 TTTTTAAAA-ACGCAAAATTTTT
1 TTTTTAAAACACG-AAAATTTTT
43639506 TTTTTAAAACACGAAAATTTT
1 TTTTTAAAACACGAAAATTTT
43639527 GGAAACACGG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
19 3 0.08
20 11 0.30
22 20 0.54
23 3 0.08
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.43
Consensus pattern (22 bp):
TTTTTAAAACACGAAAATTTTT
Found at i:43639599 original size:18 final size:18
Alignment explanation
Indices: 43639340--43639632 Score: 201
Period size: 18 Copynumber: 16.2 Consensus size: 18
43639330 CGAGAAATTT
* *
43639340 TTTTTTAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
* *
43639358 -TTTTG-AAGCACGAAATT
1 TTTTTGAAAACACGAAA-A
* * *
43639375 TTTTTTAAAAGAACAAAAA
1 TTTTTGAAAA-CACGAAAA
*
43639394 TTTTTTTAAAACACGAAAA
1 -TTTTTGAAAACACGAAAA
* *
43639413 TTTTTGCAAACACGAGAA
1 TTTTTGAAAACACGAAAA
43639431 TTTTT-AAAACAC-AAAA
1 TTTTTGAAAACACGAAAA
* *
43639447 ATTTTG-AAACACGATAA
1 TTTTTGAAAACACGAAAA
*
43639464 TTTTTG-AAACACGAGAATT
1 TTTTTGAAAACACGA-AA-A
*
43639483 TTTTTTAAAA-ACGCAAAA
1 TTTTTGAAAACACG-AAAA
*
43639501 TTTTTTTTTTAAAACACGAAAA
1 ----TTTTTGAAAACACGAAAA
* **
43639523 -TTTTGGAAACACGGGAA
1 TTTTTGAAAACACGAAAA
*
43639540 TTGTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
43639558 TTTTTGAAAATATGAAAA
1 TTTTTGAAAACACGAAAA
43639576 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
43639594 TTTTTG-AAACA-TAGAAA
1 TTTTTGAAAACACGA-AAA
*
43639611 TTTTTAGAAAACATGAAAA
1 TTTTT-GAAAACACGAAAA
43639630 TTT
1 TTT
43639633 GAATTTTTTT
Statistics
Matches: 216, Mismatches: 38, Indels: 41
0.73 0.13 0.14
Matches are distributed among these distances:
16 22 0.10
17 52 0.24
18 76 0.35
19 29 0.13
20 20 0.09
22 14 0.06
23 3 0.01
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:43640492 original size:28 final size:28
Alignment explanation
Indices: 43640459--43640526 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
43640449 ATATTATTTT
* *
43640459 TCTTTTTTCTTTCTTTCCCTTTT-TTCTC
1 TCTTTTTTCCTTCCTT-CCTTTTCTTCTC
* *
43640487 TCTTTTTTCCTTCCTTCTTTTTCTTCTT
1 TCTTTTTTCCTTCCTTCCTTTTCTTCTC
43640515 TC-TTTTTCCTTC
1 TCTTTTTTCCTTC
43640527 TTCGTTCGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.43
28 20 0.57
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (28 bp):
TCTTTTTTCCTTCCTTCCTTTTCTTCTC
Found at i:43640527 original size:14 final size:14
Alignment explanation
Indices: 43640490--43640528 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
43640480 TTTTCTCTCT
*
43640490 TTTTTCCTTCCTTC
1 TTTTTCCTTCTTTC
43640504 TTTTT-CTTCTTTC
1 TTTTTCCTTCTTTC
43640517 TTTTTCCTTCTT
1 TTTTTCCTTCTT
43640529 CGTTCGGCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTCCTTCTTTC
Found at i:43640669 original size:12 final size:13
Alignment explanation
Indices: 43640652--43640685 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
43640642 CTCTTCTTCC
43640652 TCTTTTTCTCTTT
1 TCTTTTTCTCTTT
*
43640665 T-TTTTTCTTTTT
1 TCTTTTTCTCTTT
43640677 TCTTTTTCT
1 TCTTTTTCT
43640686 ATTCTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TCTTTTTCTCTTT
Found at i:43640675 original size:18 final size:19
Alignment explanation
Indices: 43640652--43640695 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
43640642 CTCTTCTTCC
*
43640652 TCTTTTTCTCTTTTT-TTT
1 TCTTTTTCTCTTTTTCTAT
43640670 TCTTTTT-TCTTTTTCTAT
1 TCTTTTTCTCTTTTTCTAT
43640688 TCTTTTTC
1 TCTTTTTC
43640696 CCTTCGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (19 bp):
TCTTTTTCTCTTTTTCTAT
Found at i:43641406 original size:30 final size:30
Alignment explanation
Indices: 43641264--43641410 Score: 119
Period size: 30 Copynumber: 5.0 Consensus size: 30
43641254 AGATGCAATT
* * *
43641264 TTTTAG-AAAGTTTAAGGGTCAAAGTGAAA
1 TTTTAGAAAAGTTTAGGGGTCAAAATGCAA
* *
43641293 TTTT-GAGAAAGTTTAAGGGTTC-AAATGTAA
1 TTTTAGA-AAAGTTT-AGGGGTCAAAATGCAA
* * *
43641323 -TTTAGAAAAGTTTAGGGTTGAACTAT--AA
1 TTTTAGAAAAGTTTAGGGGTCAA-AATGCAA
* *
43641351 TTTT-GAGAAACTTTAGGGGTTAAAATGCAA
1 TTTTAGA-AAAGTTTAGGGGTCAAAATGCAA
43641381 TTTTAGAAAAGTTTAGGGGTCAAAATGCAA
1 TTTTAGAAAAGTTTAGGGGTCAAAATGCAA
43641411 AAAAATTAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 21
0.74 0.09 0.16
Matches are distributed among these distances:
28 13 0.14
29 31 0.33
30 44 0.46
31 7 0.07
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (30 bp):
TTTTAGAAAAGTTTAGGGGTCAAAATGCAA
Found at i:43641884 original size:16 final size:17
Alignment explanation
Indices: 43641863--43641900 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
43641853 AATTATTATT
43641863 TATTTTAAAAAATT-CA
1 TATTTTAAAAAATTCCA
* *
43641879 TATTTTCAAACATTCCA
1 TATTTTAAAAAATTCCA
43641896 TATTT
1 TATTT
43641901 AGTGCAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTTAAAAAATTCCA
Found at i:43650646 original size:20 final size:20
Alignment explanation
Indices: 43650621--43650661 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
43650611 GCAAATGTTC
*
43650621 TTTCATT-CTTTATGATTTTT
1 TTTCATTCCTTCA-GATTTTT
43650641 TTTCATTCCTTCAGATTTTT
1 TTTCATTCCTTCAGATTTTT
43650661 T
1 T
43650662 CTGCCAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTCATTCCTTCAGATTTTT
Found at i:43651623 original size:6 final size:7
Alignment explanation
Indices: 43651602--43651643 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
43651592 AGTGATGTGA
43651602 AAAAATG
1 AAAAATG
43651609 AAAAGATG
1 AAAA-ATG
43651617 -AAAATG
1 AAAAATG
43651623 AAAAATG
1 AAAAATG
43651630 -AAAATG
1 AAAAATG
43651636 TAAAAATG
1 -AAAAATG
43651644 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 9 0.29
7 13 0.42
8 9 0.29
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (7 bp):
AAAAATG
Found at i:43651641 original size:14 final size:13
Alignment explanation
Indices: 43651603--43651643 Score: 64
Period size: 14 Copynumber: 3.0 Consensus size: 13
43651593 GTGATGTGAA
43651603 AAAATGAAAAGATG
1 AAAATGAAAA-ATG
43651617 AAAATGAAAAATG
1 AAAATGAAAAATG
43651630 AAAATGTAAAAATG
1 AAAATG-AAAAATG
43651644 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 9 0.35
14 17 0.65
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:43651641 original size:21 final size:21
Alignment explanation
Indices: 43651602--43651643 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
43651592 AGTGATGTGA
*
43651602 AAAAATGAAAAGATGAAAATG
1 AAAAATGAAAAGATAAAAATG
43651623 AAAAATGAAAATG-TAAAAATG
1 AAAAATGAAAA-GATAAAAATG
43651644 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (21 bp):
AAAAATGAAAAGATAAAAATG
Found at i:43653058 original size:132 final size:132
Alignment explanation
Indices: 43652907--43653500 Score: 791
Period size: 132 Copynumber: 4.5 Consensus size: 132
43652897 TGGAGTAGGT
* *
43652907 AGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGAACATTGAAGCCAGTAATTCTACTTCCC
1 AGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCC
* * * * *
43652972 CGGGCAACAGTGGAATAGATGGAAGATTACAGATC-TGATCTCCCTAAGCAGTAGTGGAGCAGAT
66 TGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTG-CCTCCCTAAGCAGTAGTGGAGCAGAT
43653036 CAA
130 CAA
* * *
43653039 AGATGGTAGATTTTACCTCCCTGTGGTTACAGTGGAGTGCATTGAAGCCAATAATTCTACTTCCC
1 AGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCC
** * *
43653104 TGGGCAGCAGTGGAATAGATTGAAGATTTTGGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATC
66 TGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATC
43653169 AA
131 AA
* * *
43653171 AGATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCC
1 AGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCC
* * * *
43653236 TGGGTAGCAGTGGAATAGATTGAAGATTTCAGATCTTCCCTCCCTAAGCAGTAGCGGAGCAGGTC
66 TGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATC
43653301 AA
131 AA
* * *
43653303 AGATGATGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATTTCCC
1 AGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCC
* * *
43653368 TGGGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTGCCTTCCT--GCA-TAGACAGCGAAGCA
66 TGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAG--TG-G-AGCA
**
43653430 GATCGT
127 GATCAA
* * * * * * *
43653436 AGACGGCAGATTTTACCTCTCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTACCTCCC
1 AGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCC
43653501 CGGTCGGTAG
Statistics
Matches: 409, Mismatches: 48, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
129 3 0.01
130 3 0.01
131 1 0.00
132 338 0.83
133 64 0.16
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (132 bp):
AGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCC
TGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATC
AA
Found at i:43653716 original size:174 final size:174
Alignment explanation
Indices: 43653426--43653929 Score: 850
Period size: 174 Copynumber: 2.9 Consensus size: 174
43653416 TAGACAGCGA
* * *
43653426 AGCAGATCGTAGACGGCAGATTTTACCTCTCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAAT
*
43653491 TCTACCTCCCCGGTCGG-TAGTGGAATCGATCGAAAAAATAGATCTTGTCTTCATGTACTGGCGT
66 TCTACCTCCCCGGTCGGCT-GTGGAATCGATCGAAAAAGTAGATCTTGTCTTCATGTACTGGCGT
**
43653555 GAAGTAGATCAAAGAAACAGATCTTGCCTCTCTAAGCAGTAGTGG
130 GAAGTAGATCAAAGAAACAGATCTTGCCTCTCTAAGCAGTAGCAG
* *
43653600 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAAT
*
43653665 TCTACCTCCCCGGTCGGCTGTGGAATCGATCGAAAAAGCAGATCTTGTCTTCATGTACTGGCGTG
66 TCTACCTCCCCGGTCGGCTGTGGAATCGATCGAAAAAGTAGATCTTGTCTTCATGTACTGGCGTG
43653730 AAGTAGATCAAAGAAACAGATCTTGCCTCTCTAAGCAGTAGCAG
131 AAGTAGATCAAAGAAACAGATCTTGCCTCTCTAAGCAGTAGCAG
*
43653774 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAAT
* *
43653839 TCTACCTCCCCGGTCGGCAGTGGAATCGATCGAAAAAGTAGATCTTGTCTTCATGTATTGGCGTG
66 TCTACCTCCCCGGTCGGCTGTGGAATCGATCGAAAAAGTAGATCTTGTCTTCATGTACTGGCGTG
*
43653904 AAGTACATCGAAA-AAAGCAGATCTTG
131 AAGTAGATC-AAAGAAA-CAGATCTTG
43653930 TCTTCCCATA
Statistics
Matches: 311, Mismatches: 16, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
174 298 0.96
175 13 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (174 bp):
AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAAT
TCTACCTCCCCGGTCGGCTGTGGAATCGATCGAAAAAGTAGATCTTGTCTTCATGTACTGGCGTG
AAGTAGATCAAAGAAACAGATCTTGCCTCTCTAAGCAGTAGCAG
Found at i:43655525 original size:24 final size:24
Alignment explanation
Indices: 43655497--43655572 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 24
43655487 ACTATTTAAT
*
43655497 TATTATTTTTATTTGTTGTTATTA
1 TATTATTTTTATTTGTTATTATTA
*
43655521 TATTATATTATTACTTGTTTATTATTA
1 TATTAT-TT-TTATTTG-TTATTATTA
* * *
43655548 T-TTATTATTTTTTTGTCATCATTA
1 TATTATT-TTTATTTGTTATTATTA
43655572 T
1 T
43655573 TATTTTCATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
24 14 0.33
25 8 0.19
26 11 0.26
27 9 0.21
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.67
Consensus pattern (24 bp):
TATTATTTTTATTTGTTATTATTA
Found at i:43660449 original size:28 final size:25
Alignment explanation
Indices: 43660401--43660452 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
43660391 ATCAAATTGG
*
43660401 AAAAAAAAAACTTAAATACCAAATT
1 AAAAAAAAAACTTAAACACCAAATT
43660426 AAAAAAAATAACTTCAAAGCACCAAAT
1 AAAAAAAA-AACTT-AAA-CACCAAAT
43660453 ATTATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 5 0.22
27 3 0.13
28 7 0.30
ACGTcount: A:0.65, C:0.15, G:0.02, T:0.17
Consensus pattern (25 bp):
AAAAAAAAAACTTAAACACCAAATT
Found at i:43660833 original size:16 final size:17
Alignment explanation
Indices: 43660799--43660832 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
43660789 TAATGCAAGT
43660799 ATGGATTCGAAATTAAA
1 ATGGATTCGAAATTAAA
43660816 ATGGATTC-AAATCTAAA
1 ATGGATTCGAAAT-TAAA
43660833 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (17 bp):
ATGGATTCGAAATTAAA
Found at i:43662140 original size:23 final size:23
Alignment explanation
Indices: 43662119--43662163 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
43662109 TGAAAAAAAT
43662119 ATATTTTTT-A-ATTATTTTAAA
1 ATATTTTTTAATATTATTTTAAA
*
43662140 ATATTTTTTAATATTTTTTTAAA
1 ATATTTTTTAATATTATTTTAAA
43662163 A
1 A
43662164 AAATAGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 1 0.05
23 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATTTTTTAATATTATTTTAAA
Found at i:43662157 original size:10 final size:10
Alignment explanation
Indices: 43662119--43662158 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
43662109 TGAAAAAAAT
43662119 ATATTTTTTA
1 ATATTTTTTA
**
43662129 ATTATTTTAAA
1 A-TATTTTTTA
43662140 ATATTTTTTA
1 ATATTTTTTA
43662150 ATATTTTTT
1 ATATTTTTT
43662159 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATATTTTTTA
Found at i:43662159 original size:11 final size:12
Alignment explanation
Indices: 43662116--43662161 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
43662106 ATTTGAAAAA
43662116 AATATATTTTTT
1 AATATATTTTTT
43662128 AAT-TA--TTTT
1 AATATATTTTTT
*
43662137 AAAATATTTTTT
1 AATATATTTTTT
43662149 AATAT-TTTTTT
1 AATATATTTTTT
43662160 AA
1 AA
43662162 AAAAATAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
9 6 0.21
10 2 0.07
11 10 0.34
12 11 0.38
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
AATATATTTTTT
Found at i:43669564 original size:42 final size:42
Alignment explanation
Indices: 43669489--43669716 Score: 286
Period size: 42 Copynumber: 5.4 Consensus size: 42
43669479 ACGTCGCTAA
* *
43669489 CTTTTGCGGCGCTTACAGAAAAAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTT--AGGAAAAAACGCCGCTAAAGATCATGTT
43669533 CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTT
*
43669575 CTTTAGCGGCGCTT-GGAAGAAAAAGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAGGAA-AAAACGCCGCTAAAGATCATGTT
*
43669617 CTTTAGCGGCGCTTAGGAAGAAAACGCCGCTAAA-AGTAATGTT
1 CTTTAGCGGCGCTTAGGAA-AAAACGCCGCTAAAGA-TCATGTT
* *
43669660 CTATAGCGGCGCTT-GGTCAAAAACGCCGCTAAA-AGT-AGTGTT
1 CTTTAGCGGCGCTTAGG-AAAAAACGCCGCTAAAGA-TCA-TGTT
*
43669702 CTTTAGCGGCACTTA
1 CTTTAGCGGCGCTTA
43669717 TTTCACAAAC
Statistics
Matches: 169, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
41 5 0.03
42 113 0.67
43 38 0.22
44 13 0.08
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (42 bp):
CTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATGTT
Found at i:43669729 original size:85 final size:83
Alignment explanation
Indices: 43669508--43669716 Score: 298
Period size: 85 Copynumber: 2.5 Consensus size: 83
43669498 CGCTTACAGA
*
43669508 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATCATG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATAATG
*
43669573 TTCTTTAGCGGCGCTTGG
66 TTCTATAGCGGCGCTTGG
*
43669591 AAGAAAAAGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAGAAAACGCCGCTAAA-AGTA
1 AA-AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAA-AAAACGCCGCTAAAGA-TA
43669655 ATGTTCTATAGCGGCGCTTGG
63 ATGTTCTATAGCGGCGCTTGG
* *
43669676 TCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCACTTA
1 -AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
43669717 TTTCACAAAC
Statistics
Matches: 114, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
83 2 0.02
84 44 0.39
85 67 0.59
86 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (83 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGATAATG
TTCTATAGCGGCGCTTGG
Found at i:43670187 original size:21 final size:21
Alignment explanation
Indices: 43670163--43670231 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
43670153 ACTTCTCTCA
* *
43670163 CTGCTTCTCTCTCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
43670184 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
43670205 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
43670226 CTGCTT
1 CTGCTT
43670232 TAAGTTGTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.01, C:0.43, G:0.19, T:0.36
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:43675788 original size:9 final size:9
Alignment explanation
Indices: 43675771--43676191 Score: 150
Period size: 9 Copynumber: 48.2 Consensus size: 9
43675761 TAAGTATAAT
*
43675771 TAAGCTATG
1 TAAGTTATG
43675780 TAAGTTATG
1 TAAGTTATG
43675789 T-A-TTATG
1 TAAGTTATG
43675796 TAAGTTAT-
1 TAAGTTATG
*
43675804 TTA-TTATG
1 TAAGTTATG
* *
43675812 AAAATTATG
1 TAAGTTATG
*
43675821 TAAGTTGTG
1 TAAGTTATG
43675830 T-A-TTATG
1 TAAGTTATG
*
43675837 -AA--AAT-
1 TAAGTTATG
* *
43675842 TATGCTATG
1 TAAGTTATG
43675851 TAAGTTATG
1 TAAGTTATG
* *
43675860 TAAGTCATA
1 TAAGTTATG
43675869 TAAGTTATG
1 TAAGTTATG
43675878 T-A-TTATG
1 TAAGTTATG
43675885 TAAGTTATG
1 TAAGTTATG
43675894 TAAGTTAT-
1 TAAGTTATG
*
43675902 TTA-TTATG
1 TAAGTTATG
* * *
43675910 AAAATTAAG
1 TAAGTTATG
43675919 TAAGTTATG
1 TAAGTTATG
*
43675928 TAATTTATG
1 TAAGTTATG
*
43675937 -AA-TAAT-
1 TAAGTTATG
***
43675943 TAAAAAAATG
1 T-AAGTTATG
43675953 TAAGTTATG
1 TAAGTTATG
43675962 TAAG-T-TG
1 TAAGTTATG
43675969 TAAGTTATG
1 TAAGTTATG
43675978 TAAGTTATG
1 TAAGTTATG
*
43675987 TATA-ATAT-
1 TA-AGTTATG
**
43675995 TAA-TTAAC
1 TAAGTTATG
43676003 TAAGTTATG
1 TAAGTTATG
*
43676012 TAATTTATG
1 TAAGTTATG
*
43676021 TATAATATTAATG
1 --TAA-GTT-ATG
43676034 TAAGTTATG
1 TAAGTTATG
*
43676043 TAATTTATG
1 TAAGTTATG
43676052 TATA-TTAAT-
1 TA-AGTT-ATG
43676061 TAAGTTATG
1 TAAGTTATG
*
43676070 TAATTTATG
1 TAAGTTATG
*
43676079 TATAATATTAATG
1 --TAA-GTT-ATG
43676092 TAAGTTATG
1 TAAGTTATG
43676101 -AA-TAATAT-
1 TAAGT--TATG
43676109 TAA-TTAAT-
1 TAAGTT-ATG
43676117 TAAGTTATG
1 TAAGTTATG
*
43676126 TAATTTATG
1 TAAGTTATG
*
43676135 TATAATATTATG
1 --TAA-GTTATG
43676147 TAAGTTATG
1 TAAGTTATG
*
43676156 TATA-ATAT-
1 TA-AGTTATG
*
43676164 TAAGTAAT-
1 TAAGTTATG
*
43676172 TAAGTGATG
1 TAAGTTATG
*
43676181 TAATTTATG
1 TAAGTTATG
43676190 TA
1 TA
43676192 TAATATTAAT
Statistics
Matches: 315, Mismatches: 51, Indels: 92
0.69 0.11 0.20
Matches are distributed among these distances:
6 3 0.01
7 40 0.13
8 47 0.15
9 182 0.58
10 13 0.04
11 15 0.05
12 9 0.03
13 6 0.02
ACGTcount: A:0.39, C:0.01, G:0.14, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:43675797 original size:16 final size:16
Alignment explanation
Indices: 43675776--43675895 Score: 96
Period size: 16 Copynumber: 7.9 Consensus size: 16
43675766 ATAATTAAGC
43675776 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
43675792 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
43675808 TATG-AA---A---AT
1 TATGTAAGTTATGTAT
*
43675817 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * *
43675833 TATGAAAATTATG--C
1 TATGTAAGTTATGTAT
43675847 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
43675865 CATATAAGTTATGTAT
1 TATGTAAGTTATGTAT
43675881 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
43675896 AGTTATTTAT
Statistics
Matches: 80, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
12 1 0.01
14 11 0.14
15 2 0.03
16 45 0.56
17 1 0.01
18 12 0.15
ACGTcount: A:0.35, C:0.02, G:0.17, T:0.46
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:43675818 original size:25 final size:25
Alignment explanation
Indices: 43675790--43675944 Score: 129
Period size: 25 Copynumber: 6.2 Consensus size: 25
43675780 TAAGTTATGT
43675790 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
* *
43675815 ATTATGTAAGTTGTGTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
* *
43675840 ATTATGCTATG-TA---AGTTATGTAA
1 ATTATG-TAAGTTATTTA-TTATGAAA
* * * * *
43675863 GTCATATAAGTTATGTATTATGTAA
1 ATTATGTAAGTTATTTATTATGAAA
*
43675888 GTTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
* *
43675913 ATTAAGTAAGTTATGTAATTTATGAATA
1 ATTATGTAAGTTAT-TTA-TTATGAA-A
43675941 ATTA
1 ATTA
43675945 AAAAAATGTA
Statistics
Matches: 105, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
22 4 0.04
23 12 0.11
25 71 0.68
26 6 0.06
27 7 0.07
28 5 0.05
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATTTATTATGAAA
Found at i:43675922 original size:34 final size:35
Alignment explanation
Indices: 43675816--43675967 Score: 118
Period size: 34 Copynumber: 4.3 Consensus size: 35
43675806 ATTATGAAAA
* *
43675816 TTATGTAAGTTGTGTATTATGAAAATTATGCTATGTAAG
1 TTATGTAAGTTATGAATTATGAAAATTA----ATGTAAG
*
43675855 TTATGTAAGTCATAT-AAGTTATG--TATT-ATGTAAG
1 TTATGTAAGT--TATGAA-TTATGAAAATTAATGTAAG
**
43675889 TTATGTAAGTTATTTATTATGAAAATTAA-GTAAG
1 TTATGTAAGTTATGAATTATGAAAATTAATGTAAG
* * * *
43675923 TTATGTAATTTATGAATAATTAAAA-AAATGTAAG
1 TTATGTAAGTTATGAATTATGAAAATTAATGTAAG
43675957 TTATGTAAGTT
1 TTATGTAAGTT
43675968 GTAAGTTATG
Statistics
Matches: 93, Mismatches: 12, Indels: 21
0.74 0.10 0.17
Matches are distributed among these distances:
32 8 0.09
33 3 0.03
34 60 0.65
35 1 0.01
39 13 0.14
40 1 0.01
41 7 0.08
ACGTcount: A:0.39, C:0.01, G:0.16, T:0.43
Consensus pattern (35 bp):
TTATGTAAGTTATGAATTATGAAAATTAATGTAAG
Found at i:43675972 original size:16 final size:16
Alignment explanation
Indices: 43675951--43675983 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
43675941 ATTAAAAAAA
43675951 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
43675967 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
43675983 T
1 T
43675984 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:43675978 original size:25 final size:25
Alignment explanation
Indices: 43675847--43675988 Score: 89
Period size: 25 Copynumber: 5.6 Consensus size: 25
43675837 AAAATTATGC
*
43675847 TATGTAAGTTATGTAAGTCATATAAGT
1 TATGTAAGTTATGTAAGT--TGTAAGT
43675874 TATGT-A-TTATGTAAGTTATGTAAGT
1 TATGTAAGTTATGTAAG-T-TGTAAGT
* * *
43675899 TAT-TTA-TTATGAAAATTAAGTAAGT
1 TATGTAAGTTATGTAAGTT--GTAAGT
* * **
43675924 TATGTAATTTATGAATAA-TT-AAAAA
1 TATGTAAGTTATG--TAAGTTGTAAGT
*
43675949 AATGTAAGTTATGTAAGTTGTAAGT
1 TATGTAAGTTATGTAAGTTGTAAGT
43675974 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
43675989 TAATATTAAT
Statistics
Matches: 91, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
23 4 0.04
24 4 0.04
25 65 0.71
26 4 0.04
27 10 0.11
28 2 0.02
29 2 0.02
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.43
Consensus pattern (25 bp):
TATGTAAGTTATGTAAGTTGTAAGT
Found at i:43675988 original size:34 final size:34
Alignment explanation
Indices: 43675847--43676077 Score: 129
Period size: 34 Copynumber: 6.6 Consensus size: 34
43675837 AAAATTATGC
43675847 TATGTAAGTTATGTAAGTCATATAAGTTATGT--AT
1 TATGTAAGTTATGTAAGT--TATAAGTTATGTAAAT
* *
43675881 TATGTAAGTTATGTAAGTTATTTA-TTATGAAAAT
1 TATGTAAGTTATGTAAGTTA-TAAGTTATGTAAAT
* * * *
43675915 TAAGTAAGTTATGTAATTTATGAA-TAAT-TAAAAA
1 TATGTAAGTTATGTAAGTTAT-AAGTTATGT-AAAT
* * *
43675949 AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGT
1 TATGTAAGTTATGTAAGTTATAAGTTATGTAAAT
* *
43675983 TATGTATA-ATAT-TAA-TTAACTAAGTTATGTAATT
1 TATGTA-AGTTATGTAAGTT-A-TAAGTTATGTAAAT
* * *
43676017 TATGTATAATATTAATGTAAGTTATGTAATTTATGTATAT
1 TATG--TAA-GTT-ATGTAAGTTA--TAAGTTATGTAAAT
*
43676057 TAAT-TAAGTTATGTAATTTAT
1 T-ATGTAAGTTATGTAAGTTAT
43676078 GTATAATATT
Statistics
Matches: 152, Mismatches: 26, Indels: 38
0.70 0.12 0.18
Matches are distributed among these distances:
32 9 0.06
33 8 0.05
34 93 0.61
35 3 0.02
36 11 0.07
37 3 0.02
38 5 0.03
39 4 0.03
40 14 0.09
41 2 0.01
ACGTcount: A:0.39, C:0.01, G:0.14, T:0.45
Consensus pattern (34 bp):
TATGTAAGTTATGTAAGTTATAAGTTATGTAAAT
Found at i:43676092 original size:22 final size:22
Alignment explanation
Indices: 43676040--43676117 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
43676030 AATGTAAGTT
*
43676040 ATGTAATTTATGTATATTAATTAA
1 ATGTAATTTATGTATAAT-ATT-A
43676064 GTTATGTAATTTATGTATAATATTA
1 ---ATGTAATTTATGTATAATATTA
* *
43676089 ATGTAAGTTATGAATAATATTA
1 ATGTAATTTATGTATAATATTA
43676111 AT-TAATT
1 ATGTAATT
43676118 AAGTTATGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
21 4 0.09
22 22 0.47
25 1 0.02
26 3 0.06
27 17 0.36
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATGTAATTTATGTATAATATTA
Found at i:43676134 original size:34 final size:34
Alignment explanation
Indices: 43675969--43676208 Score: 159
Period size: 34 Copynumber: 7.1 Consensus size: 34
43675959 ATGTAAGTTG
* *
43675969 TAAGTTATGTAAGTTATGTATAATATTAATTAAC
1 TAAGTTATGTAATTTATGTATAATATTAATTAAT
*
43676003 TAAGTTATGTAATTTATGTATAATATTAA-T--G
1 TAAGTTATGTAATTTATGTATAATATTAATTAAT
43676034 TAAGTTATGTAATTTATG-----TA-T-ATTAAT
1 TAAGTTATGTAATTTATGTATAATATTAATTAAT
*
43676061 TAAGTTATGTAATTTATGTATAATATTAA-T--G
1 TAAGTTATGTAATTTATGTATAATATTAATTAAT
*
43676092 TAAGTTATGAATAATATTAAT-TAATTAAGTTATGTAATTTAT
1 TAAGTTATG--TAAT-TT-ATGT-A-TAA--TAT-TAATTAAT
* * * *
43676134 GTATA-ATATTATGTAAGTTATGTATAATATTAAGTAAT
1 -TA-AGTTA-TGT--AATTTATGTATAATATTAATTAAT
*
43676172 TAAGTGATGTAATTTATGTATAATATTAATTAAT
1 TAAGTTATGTAATTTATGTATAATATTAATTAAT
43676206 TAA
1 TAA
43676209 TTAAGTTATG
Statistics
Matches: 162, Mismatches: 15, Indels: 58
0.69 0.06 0.25
Matches are distributed among these distances:
24 1 0.01
25 2 0.01
26 2 0.01
27 18 0.11
31 27 0.17
32 2 0.01
33 7 0.04
34 57 0.35
35 3 0.02
36 6 0.04
37 3 0.02
38 9 0.06
39 6 0.04
40 1 0.01
41 3 0.02
42 4 0.02
43 7 0.04
44 4 0.02
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (34 bp):
TAAGTTATGTAATTTATGTATAATATTAATTAAT
Found at i:43676145 original size:21 final size:21
Alignment explanation
Indices: 43676121--43676172 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
43676111 ATTAATTAAG
43676121 TTATGTAATTTATGTATAATA
1 TTATGTAATTTATGTATAATA
*
43676142 TTATGTAAGTTATGTATAATA
1 TTATGTAATTTATGTATAATA
*
43676163 TTAAGTAATT
1 TTATGTAATT
43676173 AAGTGATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (21 bp):
TTATGTAATTTATGTATAATA
Found at i:43676763 original size:2 final size:2
Alignment explanation
Indices: 43676751--43676788 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
43676741 TATTTAAGTA
43676751 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43676789 AATTTTAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:43676842 original size:17 final size:17
Alignment explanation
Indices: 43676820--43676861 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
43676810 TTTAAGTAAT
*
43676820 GTAAGTTATAAATTTTA
1 GTAAGTTATAAATTTAA
* *
43676837 GTAAGTAATATATTTAA
1 GTAAGTTATAAATTTAA
43676854 GTAA-TTAT
1 GTAAGTTAT
43676862 GTAATATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 3 0.14
17 18 0.86
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (17 bp):
GTAAGTTATAAATTTAA
Found at i:43680830 original size:15 final size:14
Alignment explanation
Indices: 43680804--43680843 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
43680794 ATGACCGTTG
43680804 AAACCCTAAACCTC
1 AAACCCTAAACCTC
43680818 AAACCCTTAAACCTC
1 AAACCC-TAAACCTC
*
43680833 TAACCCCTAAA
1 -AAACCCTAAA
43680844 TTAACCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 6 0.26
15 12 0.52
16 5 0.22
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCCTAAACCTC
Found at i:43681437 original size:41 final size:41
Alignment explanation
Indices: 43681344--43681662 Score: 365
Period size: 41 Copynumber: 7.8 Consensus size: 41
43681334 TTTTGTTACT
* ** * *
43681344 ATTAGCGGCGCTTCGGA-AAAAACGCCGCTAAAG-GTAAATGC
1 ATTAGCGGCGCTT-AGATAAAAACGCCGCTAAAGACCAGA-GA
* * * *
43681385 ATTAGCAGCGCTTAGCTACAAACGCCGCTAAAGACAAGAGA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACCAGAGA
* * * * * *
43681426 ATTCGTGGCGCTCAGTTAAAAAAGCCGCTAAAGATCC-GAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGA-CCAGAGA
* ** * *
43681467 ATTAGCGGCGCTTATATAAAAACGTAGCCAAAGGCCAGAGA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACCAGAGA
* * *
43681508 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACCAGAGA
*
43681549 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACCAGAGA
*
43681590 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACCAGAGA
43681631 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAA
43681663 CGTTTAAAAA
Statistics
Matches: 234, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
40 3 0.01
41 228 0.97
42 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (41 bp):
ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACCAGAGA
Found at i:43681805 original size:40 final size:40
Alignment explanation
Indices: 43681761--43681836 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
43681751 CGCTTCCGGG
* *
43681761 AAATCGCCGCTGATGCTCTACCTTTAGTGGCGCTTTGGCT
1 AAATCGCCGCTAATGCTCGACCTTTAGTGGCGCTTTGGCT
* ** *
43681801 AAATCGCCTCTAATGCTCGATTTTTTGTGGCGCTTT
1 AAATCGCCGCTAATGCTCGACCTTTAGTGGCGCTTT
43681837 TGTTCCAAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (40 bp):
AAATCGCCGCTAATGCTCGACCTTTAGTGGCGCTTTGGCT
Found at i:43692468 original size:20 final size:20
Alignment explanation
Indices: 43692443--43692493 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
43692433 ATCAATTATT
*
43692443 TATAAAATTTAATTTAAATA
1 TATAAAATATAATTTAAATA
* *
43692463 TATAAACTATATTTTAAATA
1 TATAAAATATAATTTAAATA
43692483 T-TAAAATATAA
1 TATAAAATATAA
43692494 CCAATAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TATAAAATATAATTTAAATA
Found at i:43693683 original size:34 final size:35
Alignment explanation
Indices: 43693637--43693706 Score: 115
Period size: 34 Copynumber: 2.0 Consensus size: 35
43693627 TTTGTATTAA
*
43693637 AATTTCTATAAAATTTCTGT-AAAATCAATCAATC
1 AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
*
43693671 AATTTCTGTAAAATTTCTGTAAAAATCAAACAATC
1 AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
43693706 A
1 A
43693707 GAAAACAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 19 0.58
35 14 0.42
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (35 bp):
AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
Found at i:43699623 original size:3 final size:3
Alignment explanation
Indices: 43699609--43699665 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
43699599 CCTGTCATTG
* * *
43699609 TTA TTT TTA TTA TTA TTA -AA CTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
43699656 TTA TTA TTA T
1 TTA TTA TTA T
43699666 CATCATCATC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 1 0.02
3 47 0.98
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:43699670 original size:3 final size:3
Alignment explanation
Indices: 43699664--43699738 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
43699654 TATTATTATT
43699664 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
43699712 ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
43699739 TTAGTTTTAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:43703673 original size:15 final size:14
Alignment explanation
Indices: 43703626--43703674 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
43703616 ACTTCAATTG
*
43703626 AAAAAAAGAAACGA
1 AAAAAAAGAAAAGA
*
43703640 AAAGAAAAGTAAAACA
1 AAA-AAAAG-AAAAGA
43703656 AAAAAAAGAAAAAGA
1 AAAAAAAG-AAAAGA
43703671 AAAA
1 AAAA
43703675 GGAGAGGCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 3 0.10
15 19 0.66
16 7 0.24
ACGTcount: A:0.82, C:0.04, G:0.12, T:0.02
Consensus pattern (14 bp):
AAAAAAAGAAAAGA
Found at i:43704744 original size:89 final size:89
Alignment explanation
Indices: 43704579--43705445 Score: 925
Period size: 89 Copynumber: 9.8 Consensus size: 89
43704569 GTCATCATAT
* * * *
43704579 CCAGCCTGACCTCCCTGAGTTTGTAGCGGAGCAAACTGAAGATAGTAGATCTTGTCTTCTTGTAC
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
** * *
43704644 CAGTAACGAAGCAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * *
43704668 CCAGCCTGACTTCCCTAAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTATCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
* *
43704733 TGTCAGTGAAGCAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
** * * * **
43704757 CCAATCTCG-CTTCCCTGAGTTTGCAACGGAGTAGACTGAAGATAGCAGATCTTGTCTTTTTGTA
1 CCAGCCT-GACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTA
* ** * *
43704821 CCGGCAGTAAAGTAGATCTAAGACA
65 CTGGCAGCGAAGCAGATCGAAGACA
* * * * * *
43704846 CCAGCCTGACATCCCTGAGTTTGCAACGGAGTAGACTGAAGATAGCAAATCTTATCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
43704911 TGGCAGCGAAGCAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * ** * * * * *
43704935 CCAACCTCAATTCCTTGAGTTTACAGCGGAGCAGACTGAAGATAGCATATTTTGTCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
* *
43705000 TGGCAGCAAAGCAGATCAAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * *
43705024 CCAGCCTCG-TCTCCCT-ATGTTTGCAGCGGAGCAAACTGAAGATTGTAGATCTTGTATTCCAGT
1 CCAGCCT-GACCTCCCTGA-GTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGT
* *
43705087 ACTAGCAGCAAAGCAGATCGAAGACA
64 ACTGGCAGCGAAGCAGATCGAAGACA
* * * * * *
43705113 CCAGCCTGACCTCCCTGAATTTACAGTGAAGCAGACTGAAGATAGCAGATCTTATCTTCTTGTAC
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
* * *
43705178 CGGCAGTGAAGCAGATCGAAAACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * *
43705202 CTAGTCTGACCTCCCTGAGTTTGTAGTGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTAC
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
* *
43705267 CGGCAGCGAAGCAGATCAAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * * *
43705291 CTAGCCTGACCTCCCTGAGTTTGCAGTGGAACAGTCTAAAGATAGCAAATCTTGTCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
43705356 TGGCAGCGAAGCAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * * *
43705380 CCAGCCTTG-CC-CCCTGATTTTACAACGAAGCAGACTAAAGATTGTAGATCTTGTCTTCCTGTA
1 CCAGCC-TGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTA
43705443 CTG
65 CTG
43705446 CCATTGAAGT
Statistics
Matches: 648, Mismatches: 123, Indels: 15
0.82 0.16 0.02
Matches are distributed among these distances:
88 47 0.07
89 597 0.92
90 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (89 bp):
CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
TGGCAGCGAAGCAGATCGAAGACA
Found at i:43705545 original size:50 final size:50
Alignment explanation
Indices: 43705494--43711595 Score: 1613
Period size: 50 Copynumber: 122.4 Consensus size: 50
43705484 GGCATTACAG
* * * * *
43705494 TGGAATAGATTGAAGCTACAATGGCGAATCTTACTTCCCTGGCAGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * *
43705544 TGGAACATATTGAAGTTACAACAGTGAATCTTGCTT-CCTCGACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACAGTGCAA
** * * * * *
43705594 TTAAAAAGATTGAAGTTACAACGGTGAATCTTACATT-CCTGGCGGTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTAC-TTCCCTGACAGTGCAA
* * ** * ** * *
43705644 TGGAGCAGATTGAAGATACAACGGCAAATTTTACTTCCCAAACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * *
43705694 TTAAAAAGATTGAAGCTACAATGGTGAATCTTACTTCCCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * *
43705744 TGGACCAGATTCAAGC-ACAACGGTGAATCTTATTTCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * *
43705793 TTAGAA-TGATTGAAG-TCACAACGGCAAATCTTACTTTCCT-AGC-GATGCAG
1 -TGGAACAGATTGAAGCT-ACAACGGTGAATCTTACTTCCCTGA-CAG-TGCAA
* * ** * *
43705843 TGGAGCAGATTAAAGCTACAACGGTGAATCTGGCTCTCCC-GACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACT-TCCCTGACAGTGCAA
** * * * * ** *
43705893 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTATAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * *
43705943 TGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * ** * * *
43705993 T-TAAAAAATTGAAGCCACAATGGAAAATCTTACTTCCCTGGCTGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * *
43706042 TGGAACAAATTGAAGCTACAACGGCGAATCTTGC-TCCAC-AACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
** * * * * * * *
43706091 TTAAAAAGATTGAAGCCATAACGGTGAATCTTACTTCCCTGTCGGTACAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * *
43706141 TGGAGCAGATTGAAACTACAACGGTGAATCTTACTTCCCCAACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * *
43706191 TTAAAAATATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * *
43706241 TGGAACATATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * ** * *
43706291 CT-AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTTTGGCGGTGCAA
1 -TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* ** * * *
43706341 TGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTTCCCCGACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * ** * *** *
43706391 TTAAAAAGTTTGAAGCCACAATGGCAAATCTTACTTCTCTGGTGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * *
43706441 TGGAACAGATTGAAGCTACAACGTTGAATCTTATTTCCCTAACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * * *
43706491 TTAAAAAGATTGAAACCACAATGGCGAATCTTACTTCTCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * * *
43706541 TGGAATAGATTAAAGCTACAACAGCGAATCTT-GTTCCAC-GATATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
** * * * * * *
43706590 TTAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * ** * ** * ** * *
43706640 TAGAGCAGATTGAAGCTACAATGGCAAATATGGCTCCCCCCACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * *
43706690 TTAAAAAGTTTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * *
43706740 TGGAACAGATTGAAGCTAAAACGGTGAATCTTATTTCCCTAACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * * *
43706790 TTAAATAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTACAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * * * * *
43706840 TAGAGCAGATTGAAGCTACAACGGCAAATTTTGCTTCCCCGACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * * *
43706890 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGCGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* *** * *
43706940 TAGAACAGATTGAAGCTACAACGGTGAATCTGGTTTCCCTGACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * *
43706990 TTAAAAAGATTAAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * ** * * *
43707040 TGGAGCATATTGAAGCTACAATGGTGAATCTGGCTCCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * ** * * * *
43707090 TTAAAAATATTGAAGCTACAATTGCGAATCTTACTTCCCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * *
43707140 TGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * *
43707190 TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTT-CTTCGGCAGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACAGTGCAA
* * * * *
43707240 TGGAACAGATTGAAGATAAAACGGTGAATCTTGC-TCCAC-GACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
* * * * ** *
43707289 TGAGAA-AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGGTTTAC
1 TG-GAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * ** * * *
43707339 TGGAGCAGATTGAAGCTACAAAGGCAAATCTTGCTTCCCCAATATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * *
43707389 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* ** * * *
43707439 TGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * *
43707489 TTAAAAAGATT---G----AACGGTGAATCTAACTTCTCTAACGGTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * *
43707532 TAGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACAGTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * ** *
43707582 TTAAAAAGATTGAAGCAACAACGGCGAATCTTACTTCCAT-AGGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * ** * *
43707631 TGGACCAAATTGAAGCTACAACGGTAAATCTTACTTCCCAAACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * *
43707681 TATAAAAGATTGAAGCTACAACTGTGAATCTTACTTCTCTGGCGGCGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * *
43707731 TGGAACAGATTCAAGC-ACAACGGTGAATCTTATTTCCC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * ** * *
43707779 TTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCT-AGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
* * * *
43707829 TGGAGCAGATTAAAGCTACAACGGTGAAT-TTGGCTCTCCC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTT-ACT-TCCCTGACAGTGCAA
** * * * * ** * * * *
43707879 TTAAAAATATTGAAGCCACAACAGCAAATCTTACTTCCCTGGCGGTACAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * * *
43707929 TGGAACAGATTGAAGCTATAACAGTGAATCTTGTTTCCCCGGCATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * ** ** *
43707979 TTAAAGAGATTGAAGCCACAATGGAAAATCTTACTTCCCTGGTAGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * *
43708029 TGGAACAAATTGAAGCTACAACGGTGAATCTTGC-TCTAC-AACATTGCAC
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACAGTGCAA
** * * * * * * * *
43708078 TTAAAAATATTGAAGCCATAACGGTGAATATTACTTCCCT-ATCGGTACAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
** * * * *
43708128 TGGAGTAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * *
43708178 TTAAAAAGATTGAAG-TCACAACAGCGAATCTTACTTCCCT-AGCGGTGCAG
1 TGGAACAGATTGAAGCT-ACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
* * * * * *
43708228 TGGAACAGACTCAAACTACAACGGTGAATCTTATTTTCCC-GAACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTG-ACAGTGCAA
** * * * ** * *
43708279 TTAAAAAGATTGAAGCCACAACAGCAAATCTTACTTCCCT-AGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
** * *******************
43708329 TGGAGTAGATTCGAAGCTACAACGGCGAATCTGGNNNNNNNNNNNNNNNNNNNNN
1 TGGAACAGATT-GAAGCTACAACGGTGAATCT----TACTTCCCTGACAGTGCAA
**************************************************
43708384 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
***************************** * * * *
43708434 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTACTTCTCT-AGCGGTACAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
* * * * * * * *
43708484 TGGAATAGATTGAAGCTACAGCAGCGAACCTTGC-TCCAC-GATATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
** * * * * * * * *
43708533 TTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * * *
43708583 TGGAGCAGATTGAAGCTACAACGGTTAATCTGGCTCCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * ** * *
43708633 TTAAAAAGTTTGAAGCCACAACAGCAAATCTTACTTCCCT-AGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
** * * ** ** * *
43708683 TGGAGTAGATCGAAGCTACAACGGCGAATCTGGC-TCCTCCAACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
** * * * * * *
43708733 TTAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * ** *
43708783 GGGAACAGGTTGACGCTACAACGGTGAATCTTGTTTCTCC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACAGTGCAA
** * * ** * *
43708833 TTAAAAAGATTGAAG-TCACAATGGCAAATCTTACTTCCCTGGCAGTGCAG
1 TGGAACAGATTGAAGCT-ACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * *
43708883 TGGAACAAATGGAAGGTACAACAGG-GAATCTTGC-TCCAC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAAC-GGTGAATCTTACTTCC-CTGACAGTGCAA
* * * * * * * *** ** *
43708932 T-TAAAAAATTGAAGCCACAATGGCGAATATTACTTCCCTGGGGGTATAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** *** ** * * *
43708981 TGGAGTAGATTGAAGCTACAATAATGAATCTGGCTCCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * *
43709031 TTAAAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTACAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * *
43709081 TGGAACAGATTCAACCTACAACGGTGAATCTTATTTCCCTAACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * *
43709131 TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** ** * * *
43709181 TGGAATAGATTGAAGTTACAAAAGCAAATCTTACTGCAC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * *
43709230 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * * * ** * *
43709280 TGGAGCATATTGAAGGTACAACAGTTAGTCGTGTTTCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * *
43709330 TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGC-GATGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAG-TGCAA
* * * * * *
43709380 TGGAACAAATTTAAGCTACAACGGTGAATATTACTT-CCTAAACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACAGTGCAA
** * ** * * * * * * *
43709430 TTAAAAAGATTGAAGCTAGTACAGCGAATCTTACTTCCTTGGCGGCGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * *
43709480 TGGAACAGATTCAAGCTACAACGTTGAATCTTA-TTCTCCCGACA-TAGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACAGT-GCAA
** * * * ** * *
43709530 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACAACCCT-AGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
* * ** * *
43709580 TGGAGCAGATCGAAGCTACAACGGTGAATCTGGC-TCGTCC-GACATTGAAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTC--CCTGACAGTGCAA
** * * * * ** * *** *
43709630 TTAAAAATATTGAAGCCACAATGACGAATTTTACTTCCCTGGTGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** *
43709680 TGGAACAGGTTGAAGCTACAACAGTGAATCTTGTTTCTCC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACAGTGCAA
** * * * ** * * * *
43709730 TTAAAAAGATTAAAGCCACAATTGCGAAACTTACTTCCCTGGCAGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * *
43709780 TGGAACAAATTGAAGCTACAACGGCGAATCTTACTTTCCTGACACTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * ** * * * ** *
43709830 TTAAAAAGATTGAAGCCGCAATGGAGAATGTTACTTTTCT-AGCAGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
* * * * * *
43709880 GGGAATAGATTGAAGCTACAACAGCGAATCTTGC-TCCAC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
** * * * * * * * * *
43709929 TTAAAAATATTGAAGCCATAACGGCGAATCTTACTTCCCTGGCGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * * *
43709979 TGGAGCAGATTGAAGCTACAACGGTTAATCTGGCTCCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * *
43710029 TTAAAAAGTTTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * * *
43710079 TGGAACAGATTGAAGCTAAAAGGGTGAATCTTTTTTCCTTAACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * * * *** *
43710129 T-AAAGAAGATTGAAGCCATAATGGTGAATATTACTTCTCTGGTGGTGCAG
1 TGGAA-CAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * *
43710179 TGGAATAGATTGAAGCTACAACAGTGAATCTCGC-GCCAC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
** * * * ** * * * *
43710228 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACCCCCCTGGCGGTGTAT
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * ** * * * *
43710278 TGGAGTAGATTGAAGCTACAATGGTGTATCTTGTTTCCCCGACATTACAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * * ** *
43710328 T-TAAAATGATTGAAGCCACAA-TGTCGAATCTTACTTCCCTGGCGGTATAG
1 TGGAACA-GATTGAAGCTACAACGGT-GAATCTTACTTCCCTGACAGTGCAA
* * * ** * * *
43710378 TGGAGCAGATTGTAGCTACAACGATGAATCTGGCTCCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * *
43710428 TTAAAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGACGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * ** * * *
43710478 TGAAACAGATTAAAGGTACAACGGTGAATCTTGTTTCCCCGACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * *
43710528 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** * * *
43710578 TGGAGCAGATTGAATCTACAACGGTGAATCTGGCTCCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * * * * *
43710628 T-TACAAAGTTTCAAGGC-ACAACGGCGAATCATACTTCCCTGGCGGTGCAG
1 TGGA-ACAGATTGAA-GCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * *
43710678 TGGAATAGATTGAAGCTACAACGGAGAATCTTATTTCCTTAACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * ** ** *
43710728 TTAAAAAGATTGAAGCCACAACGACGAATCTTACTTTTCT-AGCAGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
* * * ** * * * *
43710778 TGGAATAGATTGAAGCTACAACTGCGAATCTGGCTCCCCCGACATTACAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * *** * * * **
43710828 TTAAAAAGTTTGAAGCCACAACGACAAATCTTACTTGCCTGGCGGTGCGG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * *
43710878 TGGAAAAGATTGAAGCTACAACGGTGAATCTTGCTT-CCTAAACATTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACAGTGCAA
* * * * * * *
43710928 T-AAAAAGATTGAAGCTACAACGGTAAATCTTACTTCCCTGGCGGCGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * *
43710977 TGGAACAGA-TCAAGCTAC-ACGGTGAATCTTATTTCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * ** * * *
43711025 TTAAAAAGATTGAAGCCACAACAGCAAATCTTACTTCTCT-AGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CAGTGCAA
* * ** ** * *
43711075 TGGACCAGATCGAAGCTACAACGGCAAATCTGGC-TCCTCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACAGTGCAA
** * * * * * *
43711125 TTAAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAA
1 -TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * ** * *
43711176 GGGAACAGGTTGAAGCTACAATGGTGAGTCTTGTTTCTCTGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * ** *
43711226 TTTAAAAGATTGAAG-TCACAA-TTTCGAATCTTACTTCCCTGGCAGTGCAA
1 TGGAACAGATTGAAGCT-ACAACGGT-GAATCTTACTTCCCTGACAGTGCAA
* * * * *
43711276 TGGAACAAATTGAAGGTACAACTGG-AAATCTTGC-TCCAC-GACATTGCAA
1 TGGAACAGATTGAAGCTACAAC-GGTGAATCTTACTTCC-CTGACAGTGCAA
* * * * * * * ** *
43711325 T-TAA-AAATTTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAG
1 TGGAACAGA-TTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * ** ** * *
43711374 TGGAGCAGATTGAAGCTACAACGATGAATCTGGCCCCCCCGACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * ** ** * * * * * *
43711424 TTAAAAATTTTGAAGCCGCAAGGGCGAATCTTACTTCCCTGGCGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* * * * * * *
43711474 TGGAATAGATTGAAGCTAAAATGGTGAATCTTATTTCCTTAACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
** * * * * * * * *
43711524 TCAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
* *
43711574 TGAAATAGATTGAAGCTACAAC
1 TGGAACAGATTGAAGCTACAAC
43711596 AGTAAANNNN
Statistics
Matches: 4090, Mismatches: 1819, Indels: 286
0.66 0.29 0.05
Matches are distributed among these distances:
43 28 0.01
46 1 0.00
47 8 0.00
48 87 0.02
49 566 0.14
50 3263 0.80
51 133 0.03
52 4 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (50 bp):
TGGAACAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAGTGCAA
Found at i:43705681 original size:100 final size:100
Alignment explanation
Indices: 43705500--43708360 Score: 3201
Period size: 100 Copynumber: 28.8 Consensus size: 100
43705490 ACAGTGGAAT
* * * * *
43705500 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACATATTGAAGTTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
43705565 CAGTGAATCTTGCTTCCTCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * * * * *
43705600 AGATTGAAGTTACAACGGTGAATCTTACATT-CCTGGCGGTACAATGGAGCAGATTGAAGATACA
1 AGATTGAAGCCACAACGGCGAATCTTAC-TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
** * * ** *
43705664 ACGGCAAATTTTACTTCCCAAACATTGTAATTAAAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
43705700 AGATTGAAGCTACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGACCAGATTCAAGC-ACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** *
43705764 CGGTGAATCTTATTTCCCCGACATTGCAATTAGAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * * *
43705799 TGATTGAAGTCACAACGGCAAATCTTACTTTCCTAGCGATGCAGTGGAGCAGATTAAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
43705864 CGGTGAATCTGGC-TCTCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTC-CCCGACATTGCAATTAAAA
* **
43705899 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTATAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
43705964 CGGTGAATCTTGTTTCCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** * *
43705999 A-ATTGAAGCCACAATGGAAAATCTTACTTCCCTGGCTGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
43706063 CGGCGAATCTTGC-TCCACAACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
43706097 AGATTGAAGCCATAACGGTGAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAACTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
43706162 CGGTGAATCTTACTTCCCCAACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
43706197 ATATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
43706262 CGGTGAATCTTATTTCCCTGACATTGCAACTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * *
43706297 AGATTGAAGCCACAACGGCGAATCTTACTTCTTTGGCGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
43706362 CGGTGAATCTGGCTTCCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
43706397 AGTTTGAAGCCACAATGGCAAATCTTACTTCTCTGGTGGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** **
43706462 CGTTGAATCTTATTTCCCTAACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
43706497 AGATTGAAACCACAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTAAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
43706562 CAGCGAATCTTG-TTCCACGATATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
43706596 AGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGTAGTAGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** * * * * *
43706661 TGGCAAATATGGCTCCCCCCACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
43706696 AGTTTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** ** * *
43706761 CGGTGAATCTTATTTCCCTAACATTGTAATTAAAT
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
43706796 AGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTACAGTAGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
43706861 CGGCAAATTTTGCTTCCCCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
43706896 AGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGCGGTGTAGTAGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
43706961 CGGTGAATCTGGTTTCCCTGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
43706996 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
43707061 TGGTGAATCTGGCTCCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * **
43707096 ATATTGAAGCTACAATTGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
43707161 CGGTGAATCTTGTTTCCCTGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
43707196 AGATTGAAGCCACAATGGCGAATCTTACTT-CTTCGGCAGTGTAGTGGAACAGATTGAAGATAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCT-GGCGGTGCAGTGGAACAGATTGAAGCTACA
* * * *
43707260 ACGGTGAATCTTGC-TCCACGACATTGTAATGAGAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * ** * *
43707295 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGGTTTACTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** * * *
43707360 AGGCAAATCTTGCTTCCCCAATATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* *
43707395 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
43707460 TGGTGAATCTTGTTTCCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * ** * * *
43707495 AGATT---G----AACGGTGAATCTAACTTCTCTAACGGTGCAATAGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
43707553 CGGTGAATCTGGCTCCCCCGACAGTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
43707588 AGATTGAAGCAACAACGGCGAATCTTACTTCCATAG-GGTGCAGTGGACCAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * ** *
43707652 CGGTAAATCTTACTTCCCAAACATTGTAA-TATAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTA-AAA
* * * * * *
43707687 AGATTGAAGCTACAACTGTGAATCTTACTTCTCTGGCGGCGCAGTGGAACAGATTCAAGC-ACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
43707751 CGGTGAATCTT-ATTTCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
43707785 AGATTGAAGCCACAACGGCAAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
43707850 CGGTGAAT-TTGGC-TCTCCCGACATTGCAATTAAAA
66 CGGTGAATCTT-GCTTC-CCCGACATTGCAATTAAAA
* * * * *
43707885 ATATTGAAGCCACAACAGCAAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
43707950 CAGTGAATCTTGTTTCCCCGGCATTGCAATTAAAG
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** ** *
43707985 AGATTGAAGCCACAATGGAAAATCTTACTTCCCTGGTAGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
43708050 CGGTGAATCTTGC-TCTACAACATTGCACTTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * ** * **
43708084 ATATTGAAGCCATAACGGTGAATATTACTTCCCTATCGGTACAGTGGAGTAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
43708149 CGGTGAATCTTGCTTCCCCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
43708184 AGATTGAAGTCACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGACTCAAACTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
43708249 CGGTGAATCTTATTTTCCCGAACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCG-ACATTGCAATTAAAA
* * * **
43708285 AGATTGAAGCCACAACAGCAAATCTTACTTCCCTAGCGGTGCAGTGGAGTAGATTCGAAGCTACA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT-GAAGCTACA
*
43708350 ACGGCGAATCT
65 ACGGTGAATCT
43708361 GGNNNNNNNN
Statistics
Matches: 2316, Mismatches: 415, Indels: 58
0.83 0.15 0.02
Matches are distributed among these distances:
93 76 0.03
96 1 0.00
97 1 0.00
98 89 0.04
99 562 0.24
100 1499 0.65
101 71 0.03
102 17 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
Found at i:43706065 original size:299 final size:299
Alignment explanation
Indices: 43705500--43708360 Score: 3217
Period size: 299 Copynumber: 9.6 Consensus size: 299
43705490 ACAGTGGAAT
* * * * *
43705500 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACATATTGAAGTTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * ** *
43705565 CAGTGAATCTTGCTTCCTCGACATTGTAATTAAAAAGATTGAAGTTACAACGGTGAATCTTACAT
66 CGGTGAATCTTGCTTCC-CAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC-T
* * * * ** * ** ** *
43705630 T-CCTGGCGGTACAATGGAGCAGATTGAAGATACAACGGCAAATTTTACTTCCCAAACATTGTAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAA
* * * * *
43705694 TTAAAAAGATTGAAGCTACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGACCAGATTCAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAG
** *
43705759 C-ACAACGGTGAATCTTATTTCCCCGACATTGCAATTAGAA
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * * *
43705799 TGATTGAAGTCACAACGGCAAATCTTACTTTCCTAGCGATGCAGTGGAGCAGATTAAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
43705864 CGGTGAATCTGGCTCTCCCGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
66 CGGTGAATCTTGCT-TCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** *
43705929 CCCTGGCGGTATAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTACAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
* ** * * *
43705994 TAAAAA-ATTGAAGCCACAATGGAAAATCTTACTTCCCTGGCTGTGCAGTGGAACAAATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGC
* * *
43706058 TACAACGGCGAATCTTGC-TCCACAACATTGCAATTAAAA
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
43706097 AGATTGAAGCCATAACGGTGAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAACTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * *
43706162 CGGTGAATCTTACTTCCCCAACATTGTAATTAAAAATATTGAAGCCACAACAGTGAATCTTACTT
66 CGGTGAATCTTGCTT-CCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * *
43706227 CCCTGGCGGTGCAGTGGAACATATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCAAC
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
** *
43706292 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTTTGGCGGTGCAATGGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGC
* *
43706357 TACAACGGTGAATCTGGCTTCCCCGACATTACAATTAAAA
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
43706397 AGTTTGAAGCCACAATGGCAAATCTTACTTCTCTGGTGGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** * *
43706462 CGTTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAACCACAATGGCGAATCTTACTT
66 CGGTGAATCTTGCTTCCC-AACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * *
43706527 CTCTGGCGGTGCAGTGGAATAGATTAAAGCTACAACAGCGAATCTTG-TTCCACGATATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
* * * * *
43706591 TAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGTAGTAGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGC
* ** * * * * *
43706656 TACAATGGCAAATATGGCTCCCCCCACATTGTAATTAAAA
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
43706696 AGTTTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * * *
43706761 CGGTGAATCTTATTTCCCTAACATTGTAATTAAATAGATTGAAGCCACAATGGCGAATCTTACTT
66 CGGTGAATCTTGCTTCCC-AACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * ** * * *
43706826 CTCTGGCGGTACAGTAGAGCAGATTGAAGCTACAACGGCAAATTTTGCTTCCCCGACATTGTAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
* * * * *
43706891 TAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGCGGTGTAGTAGAACAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGC
* * * *
43706956 TACAACGGTGAATCTGGTTTCCCTGACATTACAATTAAAA
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
43706996 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * * * **
43707061 TGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAATATTGAAGCTACAATTGCGAATCTTACTT
66 CGGTGAATCTTGCT-TCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* *
43707126 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
* * * * *
43707191 TAAAAAGATTGAAGCCACAATGGCGAATCTTACTT-CTTCGGCAGTGTAGTGGAACAGATTGAAG
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT-GGCGGTGCAGTGGAGCAGATTGAAG
* * * * * *
43707255 ATAAAACGGTGAATCTTGC-TCCACGACATTGTAATGAGAA
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * ** * *
43707295 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGGTTTACTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** * * *
43707360 AGGCAAATCTTGCTTCCCCAATATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTT
66 CGGTGAATCTTGCTT-CCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * *
43707425 CCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTACAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
* * * ** * *
43707490 TAAAAAGATT---G----AACGGTGAATCTAACTTCTCTAACGGTGCAATAGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGC
* * *
43707548 TACAACGGTGAATCTGGCTCCCCCGACAGTGCAATTAAAA
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
43707588 AGATTGAAGCAACAACGGCGAATCTTACTTCCATAG-GGTGCAGTGGACCAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * * *
43707652 CGGTAAATCTTACTTCCCAAACATTGTAA-TATAAAAGATTGAAGCTACAACTGTGAATCTTACT
66 CGGTGAATCTTGCTTCCC-AACATTGCAATTA-AAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * *
43707716 TCTCTGGCGGCGCAGTGGAACAGATTCAAGC-ACAACGGTGAATCTTATTT-CCCGACATTGCAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAA
* * *
43707779 TTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAG
43707844 CTACAACGGTGAAT-TTGGC-TCTCCCGACATTGCAATTAAAA
259 CTACAACGGTGAATCTT-GCTTC-CCCGACATTGCAATTAAAA
* * * * *
43707885 ATATTGAAGCCACAACAGCAAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * ** * * **
43707950 CAGTGAATCTTGTTTCCCCGGCATTGCAATTAAAGAGATTGAAGCCACAATGGAAAATCTTACTT
66 CGGTGAATCTTGCTT-CCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** * * ** * *
43708015 CCCTGGTAGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTG-CTCTACAACATTGCACT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
* * * * ** * *
43708079 TAAAAATATTGAAGCCATAACGGTGAATATTACTTCCCTATCGGTACAGTGGAGTAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGC
*
43708144 TACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAA
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
43708184 AGATTGAAGTCACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGACTCAAACTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * * *
43708249 CGGTGAATCTTATTTTCCCGAACATTACAATTAAAAAGATTGAAGCCACAACAGCAAATCTTACT
66 CGGTGAATCTT-GCTTCCC-AACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* ** *
43708314 TCCCTAGCGGTGCAGTGGAGTAGATTCGAAGCTACAACGGCGAATCT
129 TCCCTGGCGGTGCAGTGGAACAGATT-GAAGCTACAACGGTGAATCT
43708361 GGNNNNNNNN
Statistics
Matches: 2165, Mismatches: 363, Indels: 66
0.83 0.14 0.03
Matches are distributed among these distances:
290 23 0.01
291 22 0.01
292 148 0.07
293 48 0.02
296 3 0.00
297 103 0.05
298 338 0.16
299 888 0.41
300 570 0.26
301 22 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (299 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
CGGTGAATCTTGCTTCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATT
AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGCT
ACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
Found at i:43708668 original size:100 final size:100
Alignment explanation
Indices: 43708463--43722788 Score: 6748
Period size: 100 Copynumber: 143.9 Consensus size: 100
43708453 NNNNNNNNNN
* * * * * * * * * *
43708463 CTTACTTCTCTAGCGGTACAGTGGAATAGATTGAAGCTACAGCAGCGAACCTTGC-TCCACGATA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43708527 TTGCAATTAAAAATATTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43708562 CTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTTAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43708627 TTGCAATTAAAAAGTTTGAAGCCACAACAGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * * * *
43708662 CTTACTTCCCTAGCGGTGCAGTGGAGTAGATCGAAGCTACAACGGCGAATCTGGC-TCCTCCAAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CCGAC
* * *
43708726 ATTGTAATTAAAAATATTGAAGCCACAACGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43708762 CTTACTTCCCTGGCGGTGCAGGGGAACAGGTTGACGCTACAACGGTGAATCTTGTTTCTCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43708827 TTGCAATTAAAAAGATTGAAGTCACAATGGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43708862 CTTACTTCCCTGGCAGTGCAGTGGAACAAATGGAAGGTACAACAGG-GAATCTTGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC-GGTGAATCTTGCTTCCCCGAC
*
43708925 ATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** ** *** * *
43708960 ATTACTTCCCTGGGGGTATAGTGGAGTAGATTGAAGCTACAATAATGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43709025 TTGCAATTAAAAAGTTTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** **
43709060 CTTACTTCCCTGGCGGTACAGTGGAACAGATTCAACCTACAACGGTGAATCTTATTTCCCTAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43709125 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** ** * * *
43709160 CTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGTTACAAAAGCAAATCTTAC-TGCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43709224 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * * * * *
43709259 CTTACTTCCCTGACGGTGTAGTGGAGCATATTGAAGGTACAACAGTTAGTCGTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43709324 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * ***
43709359 CTTACTTCCCTGGCGATGCAGTGGAACAAATTTAAGCTACAACGGTGAATATTACTTCCTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * ** *
43709424 TTGTAATTAAAAAGATTGAAGCTAGTACAGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43709459 CTTACTTCCTTGGCGGCGCAGTGGAACAGATTCAAGCTACAACGTTGAATCTT-ATTCTCCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCCGAC
*
43709523 ATAGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * * *
43709559 CTTACAACCCTAGCGGTGCAGTGGAGCAGATCGAAGCTACAACGGTGAATCTGGC-TCGTCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCCGAC
* * * *
43709623 ATTGAAATTAAAAATATTGAAGCCACAATGACGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43709659 TTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAACAGTGAATCTTGTTTCTCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* ** *
43709724 TTGCAATTAAAAAGATTAAAGCCACAATTGCGAAA
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43709759 CTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTACTTTCCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * * *
43709824 CTGTAATTAAAAAGATTGAAGCCGCAATGGAGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * * * * * * *
43709859 GTTACTTTTCTAGCAGTGCAGGGGAATAGATTGAAGCTACAACAGCGAATCTTGC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43709923 TTGCAATTAAAAATATTGAAGCCATAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43709958 CTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTTAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43710023 TTGCAATTAAAAAGTTTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** ***
43710058 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAAAAGGGTGAATCTTTTTTCCTTAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43710123 TTGCAA-TAAAGAAGATTGAAGCCATAATGGTGAAT
66 TTGCAATTAAA-AAGATTGAAGCCACAACGGCGAAT
* * * * * * * *
43710158 ATTACTTCTCTGGTGGTGCAGTGGAATAGATTGAAGCTACAACAGTGAATCTCGC-GCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
43710222 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * ** * * *
43710257 CTTACCCCCCTGGCGGTGTATTGGAGTAGATTGAAGCTACAATGGTGTATCTTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * * *
43710322 TTACAGTTAAAATGATTGAAGCCACAATGTCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * * *
43710357 CTTACTTCCCTGGCGGTATAGTGGAGCAGATTGTAGCTACAACGATGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43710422 TTGCAATTAAAAAGTTTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43710457 CTTACTTCCCTGACGGTGCAGTGAAACAGATTAAAGGTACAACGGTGAATCTTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43710522 TTACAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43710557 CTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAATCTACAACGGTGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
43710622 TTGCAATTACAAAGTTTCAAGGCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** ***
43710657 CATACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGAGAATCTTATTTCCTTAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43710722 TTGCAATTAAAAAGATTGAAGCCACAACGACGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * * * * *
43710757 CTTACTTTTCTAGCAGTGCAGTGGAATAGATTGAAGCTACAACTGCGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
43710822 TTACAATTAAAAAGTTTGAAGCCACAACGACAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ***
43710857 CTTACTTGCCTGGCGGTGCGGTGGAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * **
43710922 TTGTAA-TAAAAAGATTGAAGCTACAACGGTAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * **
43710956 CTTACTTCCCTGGCGGCGCAGTGGAACAGA-TCAAGCTAC-ACGGTGAATCTTATTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43711019 TTGCAATTAAAAAGATTGAAGCCACAACAGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * ** *
43711054 CTTACTTCTCTAGCGGTGCAGTGGACCAGATCGAAGCTACAACGGCAAATCTGGC-TCCTCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CCGAC
*
43711118 ATTGCAATTAAAAAATATTGAAGCCACAACGGCGAAT
65 ATTGCAATT-AAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43711155 CTTACTTCCCTGGCGGTGCAAG-GGAACAGGTTGAAGCTACAATGGTGAGTCTTGTTTCTCTGAC
1 CTTACTTCCCTGGCGGTGC-AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
* * ***
43711219 ATTGCAATTTAAAAGATTGAAGTCACAATTTCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43711255 CTTACTTCCCTGGCAGTGCAATGGAACAAATTGAAGGTACAACTGG-AAATCTTGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC-GGTGAATCTTGCTTCCCCGAC
* *
43711318 ATTGCAATTAAAAA-TTTGAAGCCACAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * **
43711353 CTTACTTCCCTGGCGGTATAGTGGAGCAGATTGAAGCTACAACGATGAATCTGGCCCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
** * *
43711418 TTGCAATTAAAAATTTTGAAGCCGCAAGGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * ** ***
43711453 CTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAGCTAAAATGGTGAATCTTATTTCCTTAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43711518 TTGCAATCAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * ******
43711553 CTTACTTCTCTGGCGGTGCAGTGAAATAGATTGAAGCTACAACAGT-AA----------ANNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43711607 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
************************************************************
43711642 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43711707 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** * * *
43711742 CTTACTTCCCTGGCGGAGTACTGGAGTAGATTGAAGCTACAATGGTGAATCATGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* **
43711807 TTGCAATTAAAAAGATTGAAGTCACAATAGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * ***
43711842 CTTACTTCCCTGGCAGCGCAGTGGAACAAATTGAAGCTACAACAGTGAATCTTACTTCCTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * * *
43711907 TTGTAATTAAAAAGATTGAAGCTACAATGCCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * * * ** *
43711942 CTTACTTCCCTGGCGCCGCAGTGGAACAGAATCAAGATACAACAGTGTATCTTATTTTCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43712007 TTTCAATTAAAAAGATTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43712042 CTTACTTCTCTAGCGGTGCAGTGGAGCATATCGAAGCTACATCGGTGAATCTGGC-TCCCTCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGAC
* *
43712106 ATTGCAATTAACAAGATTGAAGCCACAACGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** *
43712142 CTTACTTCCCTGGCGGTGCAGTGGAATAGGTTGACA-CTACAACGATGAATCTTATTTCCCAGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA-AGCTACAACGGTGAATCTTGCTTCCCCGAC
* * *
43712206 ATTACAATTAAAAA-ATTGATA-CCACAATGGTGAAT
65 ATTGCAATTAAAAAGATTGA-AGCCACAACGGCGAAT
** * * * * ** *
43712241 CTTACTTCTTTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGGGGAATCTTGC-TCCATGATA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43712305 TTGCAATTAAAAAGATTGAAGCCACAACGGAGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *
43712340 CTTGACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACAGATGAATCTTAGCTCCCCCG
1 CTT-ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC-GGTGAATCTT-GCTTCCCCG
*
43712405 ACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAAT
63 ACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * *
43712443 CTTACTTCCCTGGCGGTATAGTGGAACAGATTGAAGCTACAACGATGAATC-TGGTTCCCCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTT-CCCCGAC
43712507 ATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGG-CGAAT
* * ** ** **
43712543 CTTACTTCTCTCGACGGTGTGGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCACTAA
1 CTTACTTCCCT-GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CCGA
* * *
43712608 CATTTCAATTAAAAAGATTGAAGCCAAAATGGCGAAT
64 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43712645 CTTACTTCCCTGGCGGGGTAGTGGGAGCAGATTGAAGCTACAACGGTTAATCTTGTTTCCTCGAC
1 CTTACTTCCCTGGCGGTGCAGT-GGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
43712710 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ***
43712746 CTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTGGCTTCCTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* **
43712811 TTGTAATTAAAAAGATTGAAGCCACAACGAAGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** **
43712846 CTTACTTCCCTGGCGGCGCAGTGGAAATAGAATTGAATGCTACAACGGTGAATCTTATTTCCCTA
1 CTTACTTCCCTGGCGGTGCAGTGG-AACAG-ATTGAA-GCTACAACGGTGAATCTTGCTTCCCCG
* * * *
43712911 ACATTGCTATTAAAAAGATGGAAGCCACAATGGTGAAT
63 ACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * ***
43712949 CTTACTTTTCTGGCGGTACAGTGGAACATATTGAAACTACAACGGTGAATCTTGC-TCTATGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43713013 TTGCAATTAAAAAGATTGAACCCACACCGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * * *
43713048 CTTACTTCCCTAGCAGTACAGAGGAACAAATTGAAGGTACAACGG-GAAATTTTGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTG-AATCTTGCTTCCCCGAC
* *
43713111 ATTACAATTAAAAA-ATTGAAGCCACAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** ********************************************
43713146 CTTACCTCCCTGACGGTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43713211 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
*****************************************************************
43713246 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43713311 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
*****************************************************************
43713346 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43713411 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43713446 CTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAATCTACAACAGCGAATCTTGC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43713510 TTGCAATTAATAAGATTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * ** *
43713545 CTTACTTCCCTGGCGGAGTACTGGAGCAGATTGAAGCTACAATGGTGAATCTTATTTCCCCGATA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * **
43713610 TTGCAATTAAAAATATTGAAGCCACAATGGTAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * **** * ***
43713645 CTTACTTCCCTAGCGGTGCAGTGGAACAAATTTAAGCTACAATAACGAATCTTACTTCCTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * ** *
43713710 TTGTAATTAAAAAGATTGAAGCTACAATTGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * * ** * *
43713745 CTTACTTCTTTGGCGGCGCAGTGGAACAGAATCAAGCTACAACGGTGCATCTTATTTTCTCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43713810 TTTCAATTAAAAAGATTGAAGCCACAATGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43713845 CTTACTTCTCTAGCGGTGCAGTGGAGCAGATCGAAGCTACATCGGTGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
43713910 TTGCCATTAAAAGGATTTAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * **
43713945 CTTACTTTCCTGGCGGTGCAGTGGAATAGGTTGAAACTACAACGGTGAAT-TTTATATCCCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT-TCCCCGAC
* * *
43714009 ATTGCAATTAAAAAGATTGATGCCACAATGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43714045 CTTACTTCCCTGGCTGTGCAGTGGAACAAATTGAAGGTACAACGGGGAATCTTAC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43714109 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** * * * *
43714144 CTTACTCCCCTGACGGTATAGTGGAGCAGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43714209 TTGTAATTAAAAAGTTTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** **
43714244 CTTACTT-CCTCGGCGGTACAGTGGAACAGATTGAAGCTACAACGTTGAATCTTATTTCCCTAAC
1 CTTACTTCCCT-GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
* * *
43714308 ATTGCTATTAAAAAGATTGAAGCCACAATGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * **
43714344 ATTACTTCTCTGGCGGTACAGTGGAACATATTGAAACTACAACGGCGAATCTTGC-TCCATGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43714408 TTGCAATTAAAAAGATTGAAGCCACACCGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43714443 CTTACTTCCCTGGCAGTACAGTGGAACAAATTGAAGGTACAACGG-GAAATCTTGC-TCCACGAT
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTG-AATCTTGCTTCCCCGAC
* *
43714506 ATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAAC
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * * *
43714541 CTTACTTCCCTGGCGGTATAGTGGAGCAGATTGAAGCTACAATGATGAATCTGGC-TCCCTCAAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGAC
* * * *
43714605 ATTGCAATTAAAAGGTTTGAAGCCAGAACGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * * * * *
43714641 CATACTTTACTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCCAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43714706 TTACAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43714741 CTTCCTTCCCTGGCGGTGCAGTGGAACAAATTGAACCTACAACGGAGAATCTTGC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43714805 TTGTAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43714840 CTTACTTCCCTGGCAGTACAGTGGAACAAATTGAAGGTACAACGG-GAATTTTTGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAA-TCTTGCTTCCCCGAC
*
43714903 ATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * * *
43714938 CTTAGTTCCCTGGCGGTATAGTGGAGCAGATTGAAGCTACAACGATGAATCTGGC-TCCCTC-AG
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGA-
* *
43715001 CATTGCAATTAAAAAGTTTGAAGCCACAACGACGAAT
64 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43715038 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCCAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43715103 TTACAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * *
43715138 CTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAA-CGTACAACGGTGAATCTTGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC-TACAACGGTGAATCTTGCTTCCCCGAC
* *
43715201 ATTGCATTTAAAAAGATTGAAGCCACAACGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * * * *
43715237 CTTACTTCCCTGGCAGTATAGTGGAACAAATTGAAGGTACAACGAG-AAATCTTGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG-GTGAATCTTGCTTCCCCGAC
*
43715300 ATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** * * * * * *
43715335 CTTAGTTCCCTGGCAGTATAGTCGAGCCGATTGAAGCTACGACGATGAATCTGGC-TCCCTCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGAC
* *
43715399 ATTGCAATTAAAAAGTTTGAAGCCGCAACGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43715435 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGATTCTGGC-TGCCCAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC-
* * ***
43715499 AAT-CAATTAAAAAGATTGAAGCCATAACTTTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** * ** * *
43715534 CTTACTTCTCTAGCGCTGCAGTGGAGTAGATCGAAGCTACCTCGGTGAATCTCGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43715599 TTACAATTAACAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * * *
43715634 CTTACTTCCCTGG-GTGTGCAATAGAACAGATTCAAGCTACAACGATGATTCTGGC-TGCCCAAC
1 CTTACTTCCCTGGCG-GTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
* * ***
43715697 AAAT-CAATTAAAAAGATTGAAGCCATAACTTTGAAT
65 -ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** * ** * *
43715733 CTTACTTCTCTAGCGGTGCAGTGGAGTAGATCGAAGCTACCTCGGTGAATCTCGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43715798 TTACAATTAACAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * * * *
43715833 CTTACTTCCCTGGCAGTATAGTGGAACAAATTGAAGGTACAACGAG-AAATCTTGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG-GTGAATCTTGCTTCCCCGAC
*
43715896 ATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** * ** ** * * *
43715931 ATTACTTCCCTAGCGGTATAGTGGAGCAGATTGAAATTACAACAATGAATCTGGCTCCCCCAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43715996 TTGCAATTAAAAAGTTTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ***********************
43716031 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAACTAC--NNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43716094 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
*****************************************************************
43716129 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43716194 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
*****************************************************************
43716229 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43716294 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
*****************************************************************
43716329 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
***********************************
43716394 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
*************************** * * * *
43716429 NNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTGAAGCTATAACGGTAAATATTGCCTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43716494 TTGTAATTAAAAAGATTGAAGCCACAACAGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43716529 CTTACTTCCCTGGCGGTGCAGTGGGATAGATTGAAGCTACAACGTTGAATCTTGTTTCCCCTAAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCC-GA-
* *
43716594 CTTTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
64 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *
43716631 CTTACTTCCCTGGC-GTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43716695 TTGCAATTAAAAAGATTGAAGCCATAACAGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** ** *
43716730 CTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTATCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43716795 TTGCTATTAAAAAGGTTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * ** * ** * * * * * * *
43716830 CTGGC-TCCAC-GACATTGCAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGC
1 CTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
** * ** ** * * **
43716893 GGTGCAGTGGAGCAGATTGAAGCTATAACGGTAAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * **** * * ** * * ** * * * * *
43716929 CTTGCCTCCCCGATATTGTAATTAAAAAGATTGAAGCCACAACGACGAATTTTACTTCCCTGGCG
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * ** * * * * *
43716994 GTGCAGTGGAACAGGTTGAAACTACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * ** * * ** * * * * * * * *
43717029 CTTGTTTCTCC-GACATTGTAATTAAAAAGATAGAAGCCATAATGGCGAATCTTACTTCCCTTG-
1 CTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGA
* * ** * * * * * *
43717092 CAGTACCGTGGAACAA-ATTGAAACTATAACGGTGAAT
64 CATTGCAAT-TAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** * * ** * * * * * * * *
43717129 CTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCACTGGCG
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* **** * * * * *
43717194 GTGCAGCGGAACAGATTAAAGCTATAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** *** * * * ** * * * * *
43717229 CTTGTTTCCCCAACGTTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* ** ** * ***
43717294 GTGCAATGGAGCAGATTGAAGCTAC-A-----NNN
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
*****************************************************************
43717323 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
********************************
43717388 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** *
43717423 CTCACTTCCCTGGCGGTGCAGTGGAAGAGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43717488 TTGCTATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * ** * ** * * * * * * *
43717523 CTGGC-TCCAC-GACATTGCAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGC
1 CTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
* * ** ** * * **
43717586 AGTGCAGTGGACCAGATTAAAGCCATAACGGTAAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * ** * * ** * * * * * * * *
43717622 CTTGCCTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCG
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *** * * **
43717687 GTGCACTGGGAGAGATTGAAGCTACAACGTTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** * ** * * * * * *
43717722 CTTA-TTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCACTGGC
1 CTTACTTCCCT-GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
* * ** ** * *
43717786 -GTACAATGGAGCAGATTGAAGCTACAACGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * ** * * * * * * * *
43717821 C-TAGCTCTCCC-GACATTGCAATTAAAAAAATTGAAGCCACAAC-GCGAATCTTACTTCTCTGG
1 CTTA-CT-TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGA
** ** * * **
43717883 CGGTGCAATGGAACAGATTGAAGCTACAACGATGAAT
64 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** ** * * * * * * *
43717920 CTTATTTCCCTGACATTGCTA-TTAAAAAGATTGAAGCAAGAATGGCGAATCTGGC-TCCACGAC
1 CTTACTTCCCTGGCGGTGC-AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
**
43717983 ATTGCAATTAAAAAGATTGGAA-CCACAACAACGAAT
65 ATTGCAATTAAAAAGATT-GAAGCCACAACGGCGAAT
* * * * * * * * ** *
43718019 CTTACTTCTCTAGCGGTGCAATGGAGCATATTAAAGCTACAACGATGAATCTGGCCGCCCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43718084 TTGTAATTAAAAAGATTGAAGCCACAACTGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * *
43718119 CTTACTTCCCTGGTAGTGCAGT-G----GA---AAGCTACAACGGTAAATCTTGTTTCCCTGATA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43718176 TTGTAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * ** * *
43718211 CTTACTTCTTTGGCGGTGCAGTGGAACAGATTGAAGCTATAACGGCAAATCCTGC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43718275 TTGTAATTAAAAAGATTGAAGCCATAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * ** *
43718310 CTTACTTCCCTGGCGGTGTACTGGAGCAGATTAAAGCTACAATTGTGAATCTTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43718375 TTGTAATTAAAAAGATTGAAGCCACAATGGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * *
43718410 CTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACAGTGAATCTTGTTTCTCCC-AC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCCGAC
* * * * * **
43718474 ATTGTAATTAAAATGATTGAAACCATAATGTTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ***
43718510 CTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTAAATCTTGCTTCCTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * * * * *
43718575 TTGTAATTAAAAATACTGAGGCTACAACGGTGAAG
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * **
43718610 CTCACTTCCCTGACGGTGCAGTGGAACAGATTTAAGCTAGAACGGTGAATCTTATTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * * *
43718675 CTGCAATTAAAAATATTAAAG-AACAGCGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43718709 CTTACTTCCCTAGCGATGCAGTGGAGCAGATCGAAGCTACAACGGCGAATCTGGC-TCCCTCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGAC
* * *
43718773 ATT-CAAATTAAAAAGATTGAAGCCAGAGCAGTC-AAT
65 ATTGC-AATTAAAAAGATTGAAGCCACAAC-GGCGAAT
** * *
43718809 CTTACTTCCCTGAAGGTGCAGTGGAACAGATTGAAGCTATAACGGTGAATCTTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43718874 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43718909 TTTACTTCCCTGGCTGTGCAGTGGAACAAATTGAAGGTACAACGGGGAATCTTAC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43718973 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * **** * *
43719008 CTTACTTCCCTGGCGGTGCAATGGAATAGATTGAAGCTACAAAAACGAATCTTGC-TGCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43719072 TTGCAATTAAAAAGATTTAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43719107 CTTACTTCCCTGGCAGTGTAGTGGAGCATATTGAAGCTACAA-GGCTTAGTCTTGTTTCCCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGG-TGAATCTTGCTTCCCCGAC
* * * *
43719171 ATTGCAATTAAAAAGATTGATGCTAAAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *
43719207 CTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACAGTGAATCTTGC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43719271 TTGTAATTAAAAAGATTGAACCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43719306 CTTACTTCCCTGGCGATGTAGTGGAGCATATTGAAGCTACAACGATTAATCTTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
43719371 ATGTAATTAAAAAGATTGAAGCCACAATGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ****
43719406 CTTACTTCCCTGGTGGTGCAGTGGAAAAAATTGAAGCTACAACGGTGAATCTTGCTTCGTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43719471 TTGTAATTAAAAAGATTGAAGCAACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** * *
43719506 CTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAACGATGAATCTTATTTTCTCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* ** *
43719571 TTGTAATTAAAAAGATTGAAGCCACAACAACAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43719606 CTTACTTCCCTAGCGGTACAGTGGAGCAGATCGAAGCTACAATGGCGAATCTGGC-TCCTCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CCGAC
*
43719670 ATTGCAATTAAAAATATTGAAGCCACAACGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *
43719706 CTTACTTCCCTGGCGGTGTAGTGGAACAGGTTGAAGCTACAATGGTGAATCTT-CTTTCTCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TTCCCCGAC
**
43719770 ATTGCAATTAAAAAGATTGAAGCCACATTGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43719806 CTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGGGGAATTTTGC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
43719870 TTACAATTAATAA-ATTGAAACCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** * * *
43719904 CTTACCTCCCTGACGGTATAGTGGAGCAGATTGAAGCTACAACGATGAATCTGGC-TCCCCGGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCC-GAC
* *
43719968 ATTGCAATTAAAAAGTTTGAAGCCACAACGACGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43720004 TTTACTTCCCTGGCGGTGCAGTGGAATAGGTTGAAGCTACAAAGGTGAATCTTGTTTCTCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
43720069 TTGTAATTAAAAAGATAGAAGCCATAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43720104 CTTACTTCCCTGGCAGTGCAGTGGAATAAATTCAAACTATAACGGTGAATCTTGCTTTCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43720169 TTGTAATTAAAAAGATTGAAGCCACAACAGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43720204 CTTACTTCCCTGGCGGTGCAGCGGAACAGATTAAAGCTATAACGGTGAATCTTGTTTCCCCAACG
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43720269 TTACAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43720304 CTTACTTCCCTGGCAGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43720369 TTGCAATTAAAAAGTTTGAAGCCACAACGGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** *
43720404 CTTACTTCCCTGGCGGTGCAGCGGAACAGATTGAAGCTATAACGGTGAATCTTATTTCCCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43720469 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *
43720504 CTTACTTCCCTGGCGGTGTAGTGGAGCATATTGAAGCTACAACGGTGAATCTGGC-TCCTCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CCGAC
* *
43720568 ATTGCAATTATAAAGATTGAAGCCACAATGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** * * ***
43720604 CTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTACAATGGCAAATCTTACTTTCTAAACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * ** *
43720669 TTGTAATTAAAAAGCTTGAAGCTAGTACAGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** *
43720704 CTTACTTCCCTGGCGGCACAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATG-TT-CCCGA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATC-T-TGCTTCCCCGA
* * * *
43720767 CATTGTAATTAAAAAGATAGAAGCCATAATGGCGAAT
64 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43720804 CTTACTTCCCTGGCAGTGCAGTGGAATAAATTCAAACTATAACGGTGAATCTTGCTTTCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43720869 TTGTAATTAAAAAGATTGAAGCCACAACAGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43720904 CTTACTTCCCTGGCGGTGCAGCGGAACAGATTAAAGCTATAACGGTGAATCTTGTTTCCCCAACG
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43720969 TTACAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
43721004 CTTACTTCCCTGGCAGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43721069 TTGCAATTAAAAAGTTTGAAGCCACAACGGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * ** *
43721104 CTTACTTCCCTGGCGGTGCAGCGGAACAGATTGAAGCTATAACGGTGAATCTTATTTCCCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43721169 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * **
43721204 CTTACTTCCCTGGCGGTGTAGTGGGATAGATTGAAGCTACAACGTTGAATCTTATTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43721269 TTGCAATTAAAAAGATTGAAGCTACAATGGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* *** * * ** *
43721304 CTTACTTCCTTGGCAACGCAGTGGAACAGATTTAAGCTACAACGGTGCATCTTATTTTCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
43721369 TTTCGATTAAAAATATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* ** * * * *
43721404 CTTACTTCCCTGGTGGTATAGTGGAGCAGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43721469 TTGCAATTAAAAAGTTTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** *
43721504 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43721569 TTGCTATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43721604 CTTACTTCTCTAGAGGTGCAGTGAAACAGATTGAAGCTACAACAGCGAATCTTGC-TCCACGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* ** *
43721668 TTGCAATTAAAAAGATTGAAGCCACAACAGTTATT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * *
43721703 CTTACTTCCCTGGCAGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* ** *
43721768 TTGCAATTAAAAAGATTAAAGCCACAAAAGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *** *
43721803 CTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTAC-TCCATAATA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43721867 TTACAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
** * * * * *
43721902 CTTACTTCCCTGTTGGTACAGTGGAGCAGATTGAAGCTATAACGGTAAATCTTGCCTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* *
43721967 TTGTAATTAAAAAGATTGAAGCCACAACAGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * **
43722002 CTTACTTCCCTGGCGGTGTAGTGGGATAGATTGAAGCTACAACGTTGAATCTTATTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43722067 TTGCAATTAAAAAGATTGAAGCTACAATGGCAAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* *** * * *
43722102 CTTACTTCCTTGGCAACGCAGTGGAACAGATTTAAGCTACAACGGTGCATCTT-ATTCTCCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCCGAC
* * * *
43722166 ATTTCGATTAAAAATATTGAAGCCACAACGGTGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
43722202 CTTACTTCTCTGGCGGTGCAGTAGAGCAGATCGAAGCTACATCGGTGAATCTGGCTCCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * *
43722267 TTGCAATTAACAAGATTGAATCCACAACGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * **
43722302 CTTACTT-CCTGGCAGTGCAGTGGAACA-AGTTGATGCTACAATGGTAAATCTTATTTCCCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGA-TTGAAGCTACAACGGTGAATCTTGCTTCCCCGAC
* * * *
43722365 ATTGCAAGTAAAAAATATTGAGGCCACAATGGCGAAT
65 ATTGCAA-TTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43722402 CTTACTTCCCTGGCAGTGTAGTGGAACAAATTGAAGGTACAACGAG-AAATCTTGC-TCCCTGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG-GTGAATCTTGCTTCCCCGAC
* *
43722465 ATTGTAATTAAAAAGATTGAAGCTACAACGGCGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * *
43722501 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTACTTTCTCTGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TTCCCCGAC
* * **
43722566 ATTGCTATTAAAAAGATTGAAGCTACAACGATGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * *
43722602 CTTACTTTCCTGGCGGTGTAGTGGAGCATATTGAAGCTACAACGGTTAATCTTGTTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
*
43722667 TTGCAATTAAAAAGATTGAAGCCACAACAGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** * *
43722702 CTTACTTTCCTGGCGGTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCTTATTTCTCTGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
**
43722767 TTGCTCTTAAAAAGATTGAAGC
66 TTGCAATTAAAAAGATTGAAGC
43722789 TATAACAGTG
Statistics
Matches: 11163, Mismatches: 2882, Indels: 363
0.77 0.20 0.03
Matches are distributed among these distances:
92 75 0.01
93 1 0.00
95 1 0.00
97 27 0.00
98 594 0.05
99 2413 0.22
100 7324 0.66
101 429 0.04
102 184 0.02
103 115 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.24
Consensus pattern (100 bp):
CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
Found at i:43711851 original size:50 final size:49
Alignment explanation
Indices: 43711702--43712855 Score: 178
Period size: 50 Copynumber: 23.0 Consensus size: 49
43711692 NNNNNNNNNN
* *
43711702 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTTACTTCCC
* * *** * * ** ** ** * * **
43711752 TGGCGGAGTACTGGAGTAGATTGAAGCTACAATGGTGAATCATGTTTCCC
1 CGACATTGCAATTAAAAAGATTGAAGC-ACAACAGCGAATCTTACTTCCC
*
43711802 CGACATTGCAATTAAAAAGATTGAAGTCACAATAGCGAATCTTACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTTACTTCCC
* * ** * * * * *
43711852 TGGCAGCGCAGTGGAACAA-ATTGAAGCTACAACAGTGAATCTTACTTCCT
1 CGACATTGCAAT-TAAAAAGATTGAAGC-ACAACAGCGAATCTTACTTCCC
** * * *
43711902 AAACATTGTAATTAAAAAGATTGAAGCTACAA-TGCCAAATCTTACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAGC-ACAACAG-CGAATCTTACTTCCC
* * *** * ** * * * * * * * *
43711952 TGGCGCCGCAGTGGAACAGAATCAAGATACAACAGTGTATCTTATTTTCC
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTTACTTCCC
* * *
43712002 CGACATTTCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT-CT
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTTACTTCCC
* ** * ** ** * * * * * **
43712051 CTAGCGGTGCAGTGGAGCATATCGAAGCTACATCGGTGAATCTGGC-TCCC
1 CGA-CATTGCAATTAAAAAGATTGAAGC-ACAACAGCGAATCTTACTTCCC
* * *
43712101 TCGACATTGCAATTAACAAGATTGAAGCCACAACGGTGAATCTTACTTCCC
1 -CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTTACTTCCC
* * ** * ** * * * *
43712152 TGGCGGTGCAGTGGAATAGGTTGACA-CTACAAC-GATGAATCTTATTTCCC
1 CGACATTGCAATTAAAAAGATTGA-AGC-ACAACAG-CGAATCTTACTTCCC
* * * ** * **
43712202 AGACATTACAATTAAAAA-ATTGATACCACAATGGTGAATCTTACTTCTT
1 CGACATTGCAATTAAAAAGATTGA-AGCACAACAGCGAATCTTACTTCCC
* * * * * * * * * * *
43712251 TGGCAGTGCAGTGGAACAA-ATTGAAGGTACAACGGGGAATCTTGC-TCCA
1 CGACATTGCAAT-TAAAAAGATTGAA-GCACAACAGCGAATCTTACTTCCC
* * * *
43712300 TGATATTGCAATTAAAAAGATTGAAGCCACAACGGAGAATCTTGACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTT-ACTTCCC
* * ** * * ** ** * *
43712351 TGGCGGTACAGTGGAGCAGATTGAAGCTACAACAGATGAATCTTAGCTCCCC
1 CGACATTGCAATTAAAAAGATTGAAGC-ACAACAG-CGAATCTTA-CTTCCC
* *
43712403 CGACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTTACTTCCC
* * ** ** * ** * * **
43712453 TGGCGGTATAGTGGAACAGATTGAAGCTACAAC-GATGAATC-TGGTTCCCC
1 CGACATTGCAATTAAAAAGATTGAAGC-ACAACAG-CGAATCTTACTT-CCC
* *
43712503 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTCTCT
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAG-CGAATCTTACTTC-CC
** *** ** * * * *
43712554 CGACGGTGTGGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCAC
1 CGACATTGCAATTAAAAAGATTGAAGC-ACAACAGCGAATCTTACTTCC-C
** * *
43712605 TAACATTTCAATTAAAAAGATTGAAGC-CAAAATGGCGAATCTTACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAGCACAACA--GCGAATCTTACTTCCC
* * *** * * ** ** * ** ** *
43712655 TGGCGGGGTAGTGGGAGCAGATTGAAGCTACAACGGTTAATCTTGTTTCCT
1 CGACATTGCAAT-TAAAAAGATTGAAGC-ACAACAGCGAATCTTACTTCCC
*
43712706 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAGCGAATCTTACTTCCC
* * ** * * * * * ** *
43712756 TGGCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTGGCTTCCT
1 CGACATTGCAAT-TAAAAAGATTGAAGC-ACAACAGCGAATCTTACTTCCC
** * *
43712806 AAACATTGTAATTAAAAAGATTGAAGCCACAAC-GAAGAATCTTACTTCCC
1 CGACATTGCAATTAAAAAGATTGAAG-CACAACAG-CGAATCTTACTTCCC
43712856 TGGCGGCGCA
Statistics
Matches: 741, Mismatches: 313, Indels: 100
0.64 0.27 0.09
Matches are distributed among these distances:
48 5 0.01
49 87 0.12
50 461 0.62
51 151 0.20
52 33 0.04
53 4 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (49 bp):
CGACATTGCAATTAAAAAGATTGAAGCACAACAGCGAATCTTACTTCCC
Found at i:43712383 original size:51 final size:51
Alignment explanation
Indices: 43712019--43713001 Score: 264
Period size: 50 Copynumber: 19.5 Consensus size: 51
43712009 TCAATTAAAA
* * * * *
43712019 AGATTGAAGCCACAACGG-CGAATCTTACTTCTCTAGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
* * * * ** * ** * * *
43712069 ATATCGAAGCTACATCGG-TGAATCTGGC-TCCCTCGACATTGCAAT-TAAC
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCT-GGCGGTACAGTGGAAC
* *
43712118 AAGATTGAAGCCACAACGG-TGAATCTTACTTCCCTGGCGGTGCAGTGGAAT
1 -AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
* * * * * ** * * *
43712169 AGGTTGACA-CTACAAC-GATGAATCTTATTTCCCAGACATTACAAT-TAAA
1 AGATTGA-AGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
* * ** * *
43712218 AAATTGATA-CCACAATGG-TGAATCTTACTTCTTTGGCAGTGCAGTGGAAC
1 AGATTGA-AGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
* ** * * * **** * * ** *
43712268 AAATTGAAGGTACAACGG-GGAATCTTGC-TCCATGATATTGCAATTAAAA
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
*
43712317 AGATTGAAGCCACAACGGA-GAATCTTGACTTCCCTGGCGGTACAGTGGAGC
1 AGATTGAAGCCACAACGGATGAATCTT-ACTTCCCTGGCGGTACAGTGGAAC
* * * * * ** * * ** *
43712368 AGATTGAAGCTACAACAGATGAATCTTAGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGATGAATCTTA-CTTCCCTGGCGGTACAGTGGAAC
* * *
43712420 AGTTTGAAGCCACAACGG-CGAATCTTACTTCCCTGGCGGTATAGTGGAAC
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
* ** * * ** * * ** *
43712470 AGATTGAAGCTACAAC-GATGAATC-TGGTTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGATGAATCTTACTT-CCCTGGCGGTACAGTGGAAC
* * * ***
43712520 AGATTGAAGCCACAACGG-TCAATCTTACTTCTCTCGACGGTGTGGTGGAAC
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCT-GGCGGTACAGTGGAAC
* * ** ** * * ** *
43712571 AGATTGAAGCTACAACGG-TGAATCTTATTTCCACTAACATTTCAATTAAAA
1 AGATTGAAGCCACAACGGATGAATCTTACTTCC-CTGGCGGTACAGTGGAAC
* * * *** *
43712622 AGATTGAAGCCAAAATGG-CGAATCTTACTTCCCTGGCGGGGTAGTGGGAGC
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGT-GGAAC
* * * * * ** * * ** *
43712673 AGATTGAAGCTACAACGG-TTAATCTT-GTTTCCTCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCT-GGCGGTACAGTGGAAC
* *
43712723 AGATTGAAGCCACAACGG-CGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
* * ** ** * ** *
43712773 AAATTGAAGCTACAACGG-TGAATCTGGCTT-CCTAAACATTGTA-A-TTAAAA
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCT-GGC--GGTACAGTGGAAC
* ** *
43712823 AGATTGAAGCCACAAC-GAAGAATCTTACTTCCCTGGCGGCGCAGTGGAAAT
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGG-AAC
* * ** ** * ** *
43712874 AGAATTGAATGCTACAACGG-TGAATCTTATTTCCCTAACATTGCTA-TTAAAA
1 AG-ATTGAA-GCCACAACGGATGAATCTTACTTCCCTGGCGGTAC-AGTGGAAC
* * **
43712926 AGATGGAAGCCACAATGG-TGAATCTTACTTTTCTGGCGGTACAGTGGAAC
1 AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
* * *
43712976 ATATTGAAACTACAACGG-TGAATCTT
1 AGATTGAAGCCACAACGGATGAATCTT
43713002 GCTCTATGAC
Statistics
Matches: 643, Mismatches: 254, Indels: 72
0.66 0.26 0.07
Matches are distributed among these distances:
48 1 0.00
49 84 0.13
50 321 0.50
51 162 0.25
52 48 0.07
53 25 0.04
54 2 0.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (51 bp):
AGATTGAAGCCACAACGGATGAATCTTACTTCCCTGGCGGTACAGTGGAAC
Found at i:43714100 original size:50 final size:50
Alignment explanation
Indices: 43713524--43715280 Score: 391
Period size: 50 Copynumber: 35.3 Consensus size: 50
43713514 AATTAATAAG
* * * * * * * * *
43713524 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGAGTACTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * * * * * *
43713574 ATTGAAGCTACAATGGTGAATCTTATTTCCCCGA-TATTGCAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACT-GTGCAGTGGAACAA
* * * *
43713623 TATTGAAGCCACAATGGTAAATCTTACTTCCCT-AGCGGTGCAGTGGAACAA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CTGTGCAGTGGAACAA
* **** * * * * *
43713674 ATTTAAGCTACAATAACGAATCTTACTT-CCTAAACAT-TGTAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCT-GAC-TGTGCAGTGGAACAA
** ** ** * * *
43713723 GATTGAAGCTACAATTGCAAATCTTACTTCTTTGGCGGCGCAGTGGAACAGA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACA-A
* * ** * * * *
43713775 A-TCAAGCTACAACGGTGCATCTTA-TTTTCTCGACAT-TTCAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCT-GAC-TGTGCAGTGGAACAA
* * * * * *
43713823 GATTGAAGCCACAATGGTGAATCTTACTTCTCT-AGCGGTGCAGTGGAGCAG
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CTGTGCAGTGGAACAA
* * ** * * *
43713874 ATCGAAGCTACATCGGTGAATCTGGCTCCCCCGACAT-TGCCA-T-TAA-AA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-TGTG-CAGTGGAACAA
* * * * * * *
43713922 GGATTTAAGCCACAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAATAG
1 --ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * * * * * *
43713974 GTTGAAACTACAACGGTGAATTTTA-TATCCCCGACAT-TGCAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACT-TCCCTGAC-TGTGCAGTGGAACAA
* * * *
43714023 GATTGATGCCACAATGGTGAATCTTACTTCCCTGGCTGTGCAGTGGAACAA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * * * *
43714074 ATTGAAGGTACAACGGGGAATCTTAC-TCCAC-GACAT-TGCAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCC-CTGAC-TGTGCAGTGGAACAA
* * * ** * *
43714122 GATTGAAGCCACAACGGTGAATCTTACTCCCCTGACGGTATAGTGGAGCAG
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* ** * * * * *
43714173 ATTGAAGCTACAACGATGAATCTGGCTCCCCCGACAT-TGTAAT-TAA-AA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-TGTGCAGTGGAACAA
* * * * *
43714221 AGTTTGAAGCCACAACGGTGAATCTTACTT-CCTCGGCGGTACAGTGGAACAG
1 A--TTGAAGCTACAACGGTGAATCTTACTTCCCT-GACTGTGCAGTGGAACAA
* * * * *
43714273 ATTGAAGCTACAACGTTGAATCTTATTTCCCTAACAT-TGCTA-T-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-TGTGC-AGTGGAACAA
* * * * * * * *
43714322 GATTGAAGCCACAATGGTGAATATTACTTCTCTGGCGGTACAGTGGAACAT
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * * * * * *
43714373 ATTGAAACTACAACGGCGAATCTTGC-TCCATGACAT-TGCAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-TGTGCAGTGGAACAA
* * * * *
43714421 GATTGAAGCCACACCGGTGAATCTTACTTCCCTGGCAGTACAGTGGAACAA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * * * * *
43714472 ATTGAAGGTACAACGG-GAAATCTTGC-TCCAC-GA-TATTGCAAT-TAAAAA
1 ATTGAAGCTACAACGGTG-AATCTTACTTCC-CTGACT-GTGCAGTGGAACAA
* * * * * * ** * *
43714520 ATTGAAGCCACAATGGCGAACCTTACTTCCCTGGCGGTATAGTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * ** * * *
43714570 ATTGAAGCTACAATGATGAATCTGGC-TCCCTCAACAT-TGCAAT-TAA-AA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCT-GAC-TGTGCAGTGGAACAA
* * * * ** * * *
43714618 GGTTTGAAGCCAGAACGGTGAATCATACTTTACTGGCGGTGCAGTGGAACAG
1 --ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * ** * ** * * * *
43714670 ATTCAAGCTACAACGATGAATCTGGCTGCCCCAACAT-TACAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-TGTGCAGTGGAACAA
* * * * * *
43714719 GATTGAAGCCACAATGGCGAATCTTCCTTCCCTGGCGGTGCAGTGGAACAA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * * * * * *
43714770 ATTGAACCTACAACGGAGAATCTTGC-TCCAC-GACAT-TGTAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCC-CTGAC-TGTGCAGTGGAACAA
* * * *
43714818 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTACAGTGGAACAA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * * * * *
43714869 ATTGAAGGTACAACGG-GAATTTTTGC-TCCAC-GACAT-TGCAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAA-TCTTACTTCC-CTGAC-TGTGCAGTGGAACAA
* * * * * * ** * *
43714917 ATTGAAGCCACAATGGCGAATCTTAGTTCCCTGGCGGTATAGTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* ** * * *
43714967 ATTGAAGCTACAACGATGAATCTGGC-TCCCTCAGCAT-TGCAAT-TAA-AA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-C-TGTGCAGTGGAACAA
* ** * * * *
43715015 AGTTTGAAGCCACAACGACGAATCTTACTTTCCTGGCGGTGCAGTGGAACAG
1 A--TTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* * ** * ** * * * *
43715067 ATTCAAGCTACAACGATGAATCTGGCTGCCCCAACAT-TACAAT-TAAAAA
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-TGTGCAGTGGAACAA
* * * * *
43715116 GATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
* ** *
43715167 ATTGAA-CGTACAACGGTGAATCTTGC-TCCAC-GACAT-TGCA-TTTAAAAA
1 ATTGAAGC-TACAACGGTGAATCTTACTTCC-CTGAC-TGTGCAGTGGAACAA
* * * **
43715215 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTATAGTGGAACAA
1 -ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
*
43715266 ATTGAAGGTACAACG
1 ATTGAAGCTACAACG
43715281 AGAAATCTTG
Statistics
Matches: 1149, Mismatches: 440, Indels: 236
0.63 0.24 0.13
Matches are distributed among these distances:
48 68 0.06
49 221 0.19
50 783 0.68
51 70 0.06
52 7 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (50 bp):
ATTGAAGCTACAACGGTGAATCTTACTTCCCTGACTGTGCAGTGGAACAA
Found at i:43714665 original size:397 final size:397
Alignment explanation
Indices: 43713446--43716065 Score: 3032
Period size: 397 Copynumber: 6.6 Consensus size: 397
43713436 NNNNNNNNNN
* * * * *
43713446 CTTAC-TTCTCTGGCGGTGCAGTGGAATAGATTGAATCTACAAC-AGCGAATCTTGCT-CCACGA
1 CTTACTTTC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGA-TGAATCTGGCTGCC-CAA
* * * * * *
43713508 CATTGCAATTAATAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGAGTACTGGAGCA
63 CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACA
* * ** * * *
43713573 GATTGAAGCTACAATGGTGAATCTTATTTCCCCGATATTGCAATTAAAAATATTGAAGCCACAAT
128 GATTGAAACTACAACGGTGAATCTT-GCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
* * * * * *** *
43713638 GGTAAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTTAAGCTACAATAACG-AATCTTACTT
192 GGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAA-CGGGAAATCTTGC-T
* * * * * ** ***
43713702 CCTA-AACATTGTAATTAAAAAGATTGAAGCTACAATTGCAAATCTTACTTCTTTGGCGGCGCAG
255 CC-ACGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAG
* * * * * *** ** * *
43713766 TGGAACAGAATCAAGCTACAACGGTGCATCTTATTTTCTCGACATTTCAATTAAAAAGATTGAAG
319 TGGAGCAGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAG
*
43713831 CCACAATGGTGAAT
384 CCACAACGGTGAAT
* * * * * * *
43713845 CTTAC-TTCTCTAGCGGTGCAGTGGAGCAGATCGAAGCTACATCGGTGAATCTGGCTCCCCCGAC
1 CTTACTTTC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGATGAATCTGGCT-GCCCAAC
* * * * * * *
43713909 ATTGCCATTAAAAGGATTTAAGCCACAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAATAG
64 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * ** * *
43713974 GTTGAAACTACAACGGTGAATTTTATATCCCCGACATTGCAATTAAAAAGATTGATGCCACAATG
129 ATTGAAACTACAACGGTGAATCTT-GCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
* * *
43714039 GTGAATCTTACTTCCCTGGCTGTGCAGTGGAACAAATTGAAGGTACAACGGGGAATCTTACTCCA
193 GTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGGGAAATCTTGCTCCA
* * * *
43714104 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTCCCCTGACGGTATAGTGGA
258 CGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGA
* *
43714169 GCAGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACATTGTAATTAAAAAGTTTGAAGCCAC
323 GCAGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAGCCAC
43714234 AACGGTGAAT
388 AACGGTGAAT
* * *** *
43714244 CTTAC-TTCCTCGGCGGTACAGTGGAACAGATTGAAGCTACAACGTTGAATCTTATTTCCCTAAC
1 CTTACTTTCCT-GGCGGTGCAGTGGAACAGATTGAAGCTACAACGATGAATCTGGCTGCCC-AAC
* * * * * *
43714308 ATTGCTATTAAAAAGATTGAAGCCACAATGGTGAATATTACTTCTCTGGCGGTACAGTGGAACAT
64 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* ** *
43714373 ATTGAAACTACAACGGCGAATCTTGCTCCATGACATTGCAATTAAAAAGATTGAAGCCACACCGG
129 ATTGAAACTACAACGGTGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
*
43714438 TGAATCTTACTTCCCTGGCAGTACAGTGGAACAAATTGAAGGTACAACGGGAAATCTTGCTCCAC
194 TGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGGGAAATCTTGCTCCAC
* *
43714503 GATATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAACCTTACTTCCCTGGCGGTATAGTGGAG
259 GACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGAG
* * * *
43714567 CAGATTGAAGCTACAATGATGAATCTGGCTCCCTCAACATTGCAATTAAAAGGTTTGAAGCCAGA
324 CAGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAGCCACA
43714632 ACGGTGAAT
389 ACGGTGAAT
* * *
43714641 CATACTTTACTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCCAACA
1 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGATGAATCTGGCTG-CCCAACA
* * *
43714706 TTACAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTTCCCTGGCGGTGCAGTGGAACAAA
65 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * * *
43714771 TTGAACCTACAACGGAGAATCTTGCTCCACGACATTGTAATTAAAAAGATTGAAGCCACAACGGT
130 TTGAAACTACAACGGTGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGT
* * *
43714836 GAATCTTACTTCCCTGGCAGTACAGTGGAACAAATTGAAGGTACAACGGGAATTTTTGCTCCACG
195 GAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGGGAAATCTTGCTCCACG
*
43714901 ACATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTAGTTCCCTGGCGGTATAGTGGAGC
260 ACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGAGC
43714965 AGATTGAAGCTACAACGATGAATCTGGCTCCCTC-AGCATTGCAATTAAAAAGTTTGAAGCCACA
325 AGATTGAAGCTACAACGATGAATCTGGCTCCCTCGA-CATTGCAATTAAAAAGTTTGAAGCCACA
**
43715029 ACGACGAAT
389 ACGGTGAAT
*
43715038 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCCAACA
1 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGATGAATCTGGCTG-CCCAACA
* * *
43715103 TTACAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAA
65 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
43715168 TTG-AACGTACAACGGTGAATCTTGCTCCACGACATTGCATTTAAAAAGATTGAAGCCACAACGG
130 TTGAAAC-TACAACGGTGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
** *
43715232 TGAATCTTACTTCCCTGGCAGTATAGTGGAACAAATTGAAGGTACAACGAGAAATCTTGCTCCAC
194 TGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGGGAAATCTTGCTCCAC
* * *
43715297 GACATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTAGTTCCCTGGCAGTATAGTCGAG
259 GACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGAG
* * *
43715361 CCGATTGAAGCTACGACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAGCCGCA
324 CAGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAGCCACA
*
43715426 ACGGCGAAT
389 ACGGTGAAT
* *
43715435 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGATTCTGGCTGCCCAACAA
1 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGATGAATCTGGCTGCCCAAC-A
* * ** * * * **
43715500 AT-CAATTAAAAAGATTGAAGCCATAACT-TTGAATCTTACTTCTCTAGCGCTGCAGTGGAGTAG
65 TTGCAATTAAAAAGATTGAAGCCACAA-TGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * ** * * *
43715563 ATCGAAGCTACCTCGGTGAATCTCGCTCCCCCGACATTACAATTAACAAGATTGAAGCCACAACG
129 ATTGAAACTACAACGGTGAATCTTGCT-CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
** * * * * * * * *
43715628 GTGAATCTTACTTCCCTGGGTGTGCAATAGAACAGATTCAAGCTACAACGATG-ATTCTGGCTGC
193 GTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACG-GGAAATCTTGCT-C
* * * ** * * **
43715692 C-CAACAAAT-CAATTAAAAAGATTGAAGCCATAACT-TTGAATCTTACTTCTCTAGCGGTGCAG
256 CACGAC-ATTGCAATTAAAAAGATTGAAGCCACAA-TGGCGAATCTTACTTCCCTGGCGGTATAG
* * ** * * * * * *
43715754 TGGAGTAGATCGAAGCTACCTCGGTGAATCTCGCTCCCCCGACATTACAATTAACAAGATTGAAG
319 TGGAGCAGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAG
43715819 CCACAACGGTGAAT
384 CCACAACGGTGAAT
* * ** * * * *
43715833 CTTACTTCCCTGGCAGTATAGTGGAACAAATTGAAGGTACAACGA-GAAATCTTGCT-CCACGAC
1 CTTACTTTCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGATG-AATCTGGCTGCC-CAAC
* * ** *
43715896 ATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAATATTACTTCCCTAGCGGTATAGTGGAGCAG
64 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* ** * * *
43715960 ATTGAAATTACAACAATGAATCTGGCTCCCCCAACATTGCAATTAAAAAGTTTGAAGCCACAACG
129 ATTGAAACTACAACGGTGAATCTTGCT-CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
* * *
43716025 GCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
193 GTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAA
43716066 ACTACNNNNN
Statistics
Matches: 1938, Mismatches: 258, Indels: 52
0.86 0.11 0.02
Matches are distributed among these distances:
396 78 0.04
397 1125 0.58
398 284 0.15
399 283 0.15
400 166 0.09
401 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (397 bp):
CTTACTTTCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGATGAATCTGGCTGCCCAACAT
TGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
TGAAACTACAACGGTGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTG
AATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGGGAAATCTTGCTCCACGA
CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGAGCA
GATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAGCCACAAC
GGTGAAT
Found at i:43716560 original size:50 final size:50
Alignment explanation
Indices: 43716503--43717315 Score: 403
Period size: 50 Copynumber: 16.3 Consensus size: 50
43716493 ATTGTAATTA
* * *
43716503 AAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * * * ** ** ** **
43716553 GATAGATTGAAGCTACAACGTTGAATCTTGTTTCCCCTAACCTTTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTT-CCCT-GGCGGTGCAATGG
43716605 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC-GTGCAATGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
** * ** * * * ** **
43716654 AGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * * * *
43716704 AAAAGATTGAAGCCATAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * * ** * ** * **
43716754 AACAGATTGAAGCTACAACGGTGAATCTTATTTATCTGACATTGCTATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * * ** * ** **
43716804 AAAAGGTTGAAGCCACAATGGCGAATCTGGC-TCCAC-GACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAATGG
* * *
43716853 AAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
** * * * * * * **** * **
43716903 AGCAGATTGAAGCTATAACGGTAAATCTTGCCTCCCCGATATTGTAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
** * *
43716953 AAAAGATTGAAGCCACAACGACGAATTTTACTTCCCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * * * ** * ** * **
43717003 AACAGGTTGAAACTACAACGGTGAATCTTGTTTCTCC-GACATTGTAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTGGCGGTGCAATGG
* * * * * * * **
43717053 AAAAGATAGAAGCCATAATGGCGAATCTTACTTCCCTTGCAGTACCGTGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * * * * * ** * **
43717103 AACAA-ATTGAAACTATAACGGTGAATCTTGCTTCCCCGACATTGTAATTA
1 AA-AAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * **
43717153 AAAAGATTGAAGCCACAACAGTGAATCTTACTTCACTGGCGGTGCAGCGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
* * * * ** *** * * **
43717203 AACAGATTAAAGCTATAACGGTGAATCTTGTTTCCCCAACGTTACAATTA
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
*
43717253 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAATGG
1 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
**
43717303 AGCAGATTGAAGC
1 AAAAGATTGAAGC
43717316 TACANNNNNN
Statistics
Matches: 525, Mismatches: 228, Indels: 20
0.68 0.29 0.03
Matches are distributed among these distances:
49 82 0.16
50 398 0.76
51 12 0.02
52 33 0.06
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (50 bp):
AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATGG
Found at i:43716963 original size:149 final size:150
Alignment explanation
Indices: 43716657--43716978 Score: 423
Period size: 149 Copynumber: 2.2 Consensus size: 150
43716647 GCAATGGAGC
* * * * *
43716657 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCATAA
1 AGATTGAAGCCACAACGGCGAATCTGGCTCCCACGACATTGCAATTAAAAAGATTGAAACCACAA
* **
43716722 CAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTT
66 CAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTAAATCTTACCT
* *
43716787 ATCTGACATTGCTATTAAAA
131 ACCCGACATTGCTATTAAAA
* *
43716807 AGGTTGAAGCCACAATGGCGAATCTGGCT-CCACGACATTGCAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCCACAACGGCGAATCTGGCTCCCACGACATTGCAATTAAAAAGATTGAAACCACAA
** * * * * *
43716871 TGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGCTATAACGGTAAATCTTGCCT
66 CAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTAAATCTTACCT
* *
43716936 CCCCGATATTG-TAATTAAAA
131 ACCCGACATTGCT-ATTAAAA
*
43716956 AGATTGAAGCCACAACGACGAAT
1 AGATTGAAGCCACAACGGCGAAT
43716979 TTTACTTCCC
Statistics
Matches: 147, Mismatches: 24, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
148 1 0.01
149 121 0.82
150 25 0.17
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (150 bp):
AGATTGAAGCCACAACGGCGAATCTGGCTCCCACGACATTGCAATTAAAAAGATTGAAACCACAA
CAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTAAATCTTACCT
ACCCGACATTGCTATTAAAA
Found at i:43716986 original size:249 final size:248
Alignment explanation
Indices: 43716596--43717080 Score: 742
Period size: 249 Copynumber: 2.0 Consensus size: 248
43716586 CCCCTAACCT
*
43716596 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGTGCAATGGAGCAGAT
1 TTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCCTGGCGTGCAATGGAGCAGAT
* * *
43716661 TGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCATAACAGC
66 TGAAGCTACAACGGTAAATCTGCCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGC
* *
43716726 GAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTATCT
131 GAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTATCC
* *
43716791 GACATTGCT-ATTAAAAAGGTTGAAGCCACAATGGCGAATCTGGCTCCACGACA
196 GACATTG-TAATTAAAAAGATAGAAGCCACAATGGCGAATCTGGCTCCACGACA
* *
43716844 TTGCAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGA
1 TTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCCTGGC-GTGCAATGGAGCAGA
* * *
43716909 TTGAAGCTATAACGGTAAATCTTGCCT-CCCCGATATTGTAATTAAAAAGATTGAAGCCACAAC-
65 TTGAAGCTACAACGGTAAATC-TGCCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACA
* * * * *
43716972 GACGAATTTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAACTACAACGGTGAATCTTGTTTC
129 G-CGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTA
*
43717037 TCCGACATTGTAATTAAAAAGATAGAAGCCATAATGGCGAATCT
193 TCCGACATTGTAATTAAAAAGATAGAAGCCACAATGGCGAATCT
43717081 TACTTCCCTT
Statistics
Matches: 214, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
248 49 0.23
249 161 0.75
250 4 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (248 bp):
TTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCCTGGCGTGCAATGGAGCAGAT
TGAAGCTACAACGGTAAATCTGCCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGC
GAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTATCC
GACATTGTAATTAAAAAGATAGAAGCCACAATGGCGAATCTGGCTCCACGACA
Found at i:43717504 original size:50 final size:50
Alignment explanation
Indices: 43717450--43723918 Score: 2408
Period size: 50 Copynumber: 129.9 Consensus size: 50
43717440 GCAGTGGAAG
*
43717450 AGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * ** *
43717500 AGATTGAAGCCACAATGGCGAATCTGGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* * * * * ** **
43717549 AGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCAGTGC-AGTGGACC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * * * * *
43717599 AGATTAAAGCCATAACGGTAAATCTTGCCTCCCCGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * * * ** *** *
43717649 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGC-ACTGGGAG
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * *
43717699 AGATTGAAGCTACAACGTTGAATCTTA-TTTCCTCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCTATTAAAA
* * * * * * ** **
43717749 AGATTGAAGCCACAACGGTGAATCTTACTTCACTGGC-GTACAATGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
*
43717798 AGATTGAAGCTACAACGGTGAATC-TAGCTCTCCC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTA-CT-TCCCTGACATTGCTATTAAAA
* * * * * ** * ** *
43717848 AAATTGAAGCCACAAC-GCGAATCTTACTTCTCTGGCGGTGCAATGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* *
43717897 AGATTGAAGCTACAACGATGAATCTTATTTCCCTGACATTGCTATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * ** *
43717947 AGATTGAAGCAAGAATGGCGAATCTGGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* *** * ** * ** **
43717996 AGATTGGAA-CCACAACAACGAATCTTACTTCTCT-AGCGGTGCAATGGAGC
1 AGATT-GAAGCTACAACGGTGAATCTTACTTCCCTGA-CATTGCTATTAAAA
* * * ** **
43718046 ATATTAAAGCTACAACGATGAATCTGGCCGCCCTGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * ** * *
43718096 AGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGC-AGT----
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** *
43718141 GGA---AAGCTACAACGGTAAATCTTGTTTCCCTGATATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * * ** * ** ** *
43718188 AGATTGAAGCCACAATGGCGAATCTTACTTCTTTGGCGGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* ** * *
43718238 AGATTGAAGCTATAACGGCAAATCCTGC-TCCAC-GACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCT-ATTAAAA
* * * ** ** **
43718287 AGATTGAAGCCATAACGGTGAATCTTACTTCCCTGGCGGTG-TACTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* ** ** *
43718337 AGATTAAAGCTACAATTGTGAATCTTGTTTCCCCGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * ** * ** ** **
43718387 AGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGC-AGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* ** *
43718437 AGATTGAAGCTACAACAGTGAATCTTGTTTCTCC-CACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACATTGCT-ATTAAAA
* * * * * * * ** * *
43718487 TGATTGAAACCATAATGTTGAATCTTACTTCCCTGGCGGTGC-AGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * *
43718538 A-ATTGAAGCTACAACGGTAAATCTTGCTT-CCTAAACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCT-ATTAAAA
* * * * * ** ** *
43718587 ATACTGAGGCTACAACGGTGAAGCTCACTTCCCTGACGGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * * * *
43718637 AGATTTAAGCTAGAACGGTGAATCTTATTTCCCCGACACTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * * ** **
43718687 ATATTAAAG-AACAGCGGCGAATCTTACTTCCCT-AGCGA-TGC-AGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-C-ATTGCTA-TTAAAA
* * ** *
43718736 AGATCGAAGCTACAACGGCGAATCTGGC-TCCCTCGACATT-CAAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGC-TATTAAAA
* * * * * * ** *
43718786 AGATTGAAGCCAGAGCAGTCAATCTTACTTCCCTGA-AGGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACA-TTGCTA-TTAAAA
* ** * *
43718836 AGATTGAAGCTATAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * * * *
43718886 AGATTGAAGCCACAATGGCGAATTTTACTTCCCTGGC-TGTGC-AGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACAT-TGCTA-T-TAAAA
* * *
43718937 A-ATTGAAGGTACAACGGGGAATCTTAC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* * * * ** * ** *
43718985 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAATGGAAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
**** * * * *
43719035 AGATTGAAGCTACAAAAACGAATCTTGCTGCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * ** **
43719084 AGATTTAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTG-TAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * ** * *
43719134 ATATTGAAGCTACAA-GGCTTAGTCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGG-TGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * * * ** ** *
43719184 AGATTGATGCTAAAATGGCGAATCTTACTTCTCTGGCGGTGC-AGTGGAAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* *
43719234 AGATTGAAGCTACAACAGTGAATCTTGC-TCCAC-GACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCT-ATTAAAA
* * * * ** **
43719283 AGATTGAACCCACAACGGCGAATCTTACTTCCCTGGCGA-TG-TAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-ATTGCTA-TTAAAA
* * * ** * *
43719333 ATATTGAAGCTACAACGATTAATCTTGTTTCCCCGACAATG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * **** *
43719383 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTGGTGC-AGTGGAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * *
43719434 A-ATTGAAGCTACAACGGTGAATCTTGCTT-CGTAAACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCT-ATTAAAA
* * *** ** *
43719483 AGATTGAAGCAACAACGGTGAATCTTACTTCCCTGGCGGCGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * **
43719533 AGATTCAAGCTACAACGATGAATCTTA-TTTTCTCGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCT-ATTAAAA
* **** ** * ** **
43719583 AGATTGAAGCCACAACAACAAATCTTACTTCCCT-AGCGGTAC-AGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CATTGCTA-TTAAAA
* * * ** * *
43719633 AGATCGAAGCTACAATGGCGAATCTGGC-TCCTCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* * * * ** ** *
43719683 ATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG-TAGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * *
43719733 AGGTTGAAGCTACAATGGTGAATCTT-CTTTCTCC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTAC-TTC-CCTGACATTGCTATTAAAA
* ** * * * * *
43719783 AGATTGAAGCCACATTGGCGAATCTTACTTCCCTGGCAGTGC-AGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * * * * * *
43719834 A-ATTGAAGGTACAACGGGGAATTTTGC-TCCAC-GACATTACAATTAATA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* * * * * ** * ** **
43719882 A-ATTGAAACCACAATGGCGAATCTTACCTCCCTGACGGT-ATAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* ** * * *
43719931 AGATTGAAGCTACAACGATGAATCTGGCTCCCCGGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** * * ** ** *
43719981 AGTTTGAAGCCACAACGACGAATTTTACTTCCCTGGCGGTGC-AGTGGAAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * **
43720031 AGGTTGAAGCTACAAAGGTGAATCTTGTTTCTCC-GACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACATTGCT-ATTAAAA
* * * * * * * * *
43720081 AGATAGAAGCCATAATGGCGAATCTTACTTCCCTGGCAGTGC-AGTGGAATA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * * *
43720132 A-ATTCAAACTATAACGGTGAATCTTGCTTTCCC-GACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTAC-TTCCCTGACATTGCT-ATTAAAA
* * * ** *** *
43720181 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGC-AGCGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * ** ** * * *
43720231 AGATTAAAGCTATAACGGTGAATCTTGTTTCCCCAACGTTACAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * ** **
43720281 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAATGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
** * * *
43720331 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** * ** *** *
43720381 AGTTTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGC-AGCGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * *
43720431 AGATTGAAGCTATAACGGTGAATCTTATTTCCCTGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** ** **
43720481 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTG-TAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* ** * * *
43720531 ATATTGAAGCTACAACGGTGAATCTGGC-TCCTCCGACATTGCAATTATAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* * * * ** * *
43720581 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTG-TAGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* ** * *
43720632 A-ATTGAAGCTACAATGGCAAATCTTACTT-TCTAAACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCT-ATTAAAA
* ** * * * * * ** *
43720681 AGCTTGAAGCTAGTACAGCGAATCTTACTTCCCTGGC--GGCACAGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGC-TA-TTAAAA
* *
43720731 AGATTCAAGCTACAACGGTGAATCTTATGTTCCC-GACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTGACATTGCT-ATTAAAA
* * * * * * * * *
43720781 AGATAGAAGCCATAATGGCGAATCTTACTTCCCTGGCAGTGC-AGTGGAATA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * * *
43720832 A-ATTCAAACTATAACGGTGAATCTTGCTTTCCC-GACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTAC-TTCCCTGACATTGCT-ATTAAAA
* * * ** *** *
43720881 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGC-AGCGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * ** ** * * *
43720931 AGATTAAAGCTATAACGGTGAATCTTGTTTCCCCAACGTTACAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * ** **
43720981 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAATGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
** * * *
43721031 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** * ** *** *
43721081 AGTTTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGC-AGCGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * *
43721131 AGATTGAAGCTATAACGGTGAATCTTATTTCCCTGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** *** *
43721181 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTG-TAGTGGGAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * *
43721231 AGATTGAAGCTACAACGTTGAATCTTATTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* ** * * ** ** *
43721281 AGATTGAAGCTACAATGGCAAATCTTACTTCCTTGGCAACGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * * *
43721331 AGATTTAAGCTACAACGGTGCATCTTATTTTCCC-GACATTTCGATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTGACATTGCTATTAAAA
* * * * * * * **
43721381 ATATTGAAGCCACAATGGCGAATCTTACTTCCCTG---GTGGTATAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTAT--T-AAAA
* ** * * *
43721431 AGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * ** ** *
43721481 AGTTTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
*
43721531 AGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * ** * *
43721581 AGATTGAAGCCACAATGGCGAATCTTACTTCTCTAGA-GGTGC-AGTGAAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCTA-TTAAAA
* * * *
43721631 AGATTGAAGCTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* * * * * * * ** *
43721680 AGATTGAAGCCACAACAGTTATTCTTACTTCCCTGGCAGTAC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
** * *
43721730 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** ** * ** * *
43721780 AGATTAAAGCCACAAAAGCAAATCTTACTTCCCTGGCGGTGC-AGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * * * * *
43721831 A-ATTGAAGCTACAACGGCGAATCTTAC-TCCATAATATTACAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * ** **
43721879 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTG---TTGGTACAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT--A-TTAAAA
* * * * *
43721929 AGATTGAAGCTATAACGGTAAATCTTGCCTCCCCGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * * * ** *** *
43721979 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTG-TAGTGGGAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * *
43722029 AGATTGAAGCTACAACGTTGAATCTTATTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* ** * * ** ** *
43722079 AGATTGAAGCTACAATGGCAAATCTTACTTCCTTGGCAACGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * * *
43722129 AGATTTAAGCTACAACGGTGCATCTTA-TTCTCCCGACATTTCGATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACATTGCTATTAAAA
* * * * ** * **
43722179 ATATTGAAGCCACAACGGTGAATCTTACTTCTCTGGCGGTGC-AGTAGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTA-AAA
* * ** * * * *
43722229 AGATCGAAGCTACATCGGTGAATCTGGCTCCCCCGACATTGCAATTAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * * *
43722279 AGATTGAATCCACAACGGTGAATCTTACTT-CCTGGCAGTGC-AGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * * * * * *
43722329 AG-TTGATGCTACAATGGTAAATCTTATTTCCCCGACATTGCAAGTAAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * * * * * * *
43722379 ATATTGAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTG-TAGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * *
43722430 A-ATTGAAGGTACAACGAG-AAATCTTGC-TCCCTGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACG-GTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * ** ** *
43722478 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
*
43722528 AGATTGAAGCTACAACGGTGAATCTTACTTTCTCTGACATTGCTATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTAC-TTCCCTGACATTGCTATTAAAA
* * * ** ** **
43722579 AGATTGAAGCTACAACGATGAATCTTACTTTCCTGGCGGTG-TAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * ** * *
43722629 ATATTGAAGCTACAACGGTTAATCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * * ** *** *
43722679 AGATTGAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTGC-AGTGGGAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * *
43722729 AGATTGAAGCTACAACGTTGAATCTTATTTCTCTGACATTGCTCTTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
* * * * *
43722779 AGATTGAAGCTATAACAGTGAACCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTATTAAAA
* * * * * *
43722828 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTAC-AGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-T-TAAAA
* * * *
43722879 A-ATTAAAGGTACAACGG-GAATTCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAA-TCTTACTTCC-CTGACATTGCTATTAAAA
* * * * ** * ** **
43722927 A-ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGT-ATAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * ** *
43722976 AGATTGAAGTTACAACGATGAATCTGGC-TCCCTCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCTATTAAAA
* * * * * ** * ** *
43723026 AGTTTGAAGCCACAACGGCGAATCTTACTTTCCTGGCGGTAC-AGTGGAAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * ** * ** * *
43723076 AGATTTAAGCTACAACGATGAATCTGGCTGCCCCAACAAAT-CAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-ATTGCTATTAAAA
* * * * ** ** *
43723126 AGATTGAAGCCACGACTGTGAATCTTACTTCCCTTG-CAGTGCGGTGGAAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCC-TGACATTGCTATTAAAA
* *
43723176 AGATTGAAGCTACAACAGTGAATCTTATTTCCCTGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * * * * ** **
43723226 AGATTGAAGCTACAATGGCGAATCTTACTTCTCTGGCAGTGC-AGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * * * *
43723276 AGATTGAAGCTATAACGGTAAATCTTGCCTCCCCGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* ** * * ** ** *
43723326 AGATTGAAGCCACAACGACGAATCTTACTTTCCTGGCGGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * ** * ** * *
43723376 AGATTCAAGCTACAACGATGAATCTGGCTGCCCCAACAAAT-CAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGAC-ATTGCTATTAAAA
* * * * * ** *
43723426 AGATTGAAACTACGACTGTGAATCTTACTTCCCTTG-CAGTG-TGGTGGAAT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCC-TGACATTGCT-ATTAAAA
**
43723476 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT-ATTAAAA
* * * * * ** *
43723526 AGATTGAAGCTACAATGGCGAATCTTACTTCTCTGGCAGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* *** *
43723576 AGATTAAAGCTACAACGACAAATCTTGC-TCCAC-GACATTG-TAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCT-ATTAAAA
* ** **
43723625 AGATTGAAGCCACAACGGTGAATCTTACTTCCCT-AGCGA-TGC-AGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-C-ATTGCTA-TTAAAA
** *
43723675 AGATTGAAGCTACAACGGTGAATCTGGCTCTCCC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACT-TCCCTGACATTGCTATTAAAA
* * ** ** *
43723725 AGATTGAAGCCACAACGGTGAATCTTACTTCCTCTGGCGGTGC-AGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCTA-TTAAAA
* *
43723776 AGATTGAAGCTACAACGGTGAATCTTGCTCCCCTGACATTGC-AGTTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* * **** * ** *
43723826 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTG-GAGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTA-TTAAAA
* *
43723876 AGATTAAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCT
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCT
43723919 NNNNNNNNNN
Statistics
Matches: 4504, Mismatches: 1614, Indels: 601
0.67 0.24 0.09
Matches are distributed among these distances:
42 28 0.01
43 2 0.00
45 2 0.00
47 7 0.00
48 72 0.02
49 708 0.16
50 3406 0.76
51 269 0.06
52 3 0.00
53 7 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCTATTAAAA
Found at i:43717623 original size:99 final size:99
Alignment explanation
Indices: 43717450--43717971 Score: 541
Period size: 99 Copynumber: 5.3 Consensus size: 99
43717440 GCAGTGGAAG
* * * * ** * ** * *
43717450 AGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC-AATGGACAGATTGAAGCTACAA
* * * *
43717515 TGGCGAATC-TGGCTCCACGACATTGCAATTAAAA
65 CGGTGAATCTTAGCTCCCCGACATTGCAATTAAAA
* * * * * * * *
43717549 AGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGACCAGATTAAAGCCATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAATGGA-CAGATTGAAGCTACAA
* *
43717614 CGGTAAATCTT-GCCTCCCCGACATTGTAATTAAAA
65 CGGTGAATCTTAG-CTCCCCGACATTGCAATTAAAA
* * *
43717649 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCACTGGGAGAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAAT-GGACAGATTGAAGCTACAA
* ** *
43717714 CGTTGAATCTTATTTCCTCGACATTGCAATTAAAA
65 CGGTGAATCTTAGCTCCCCGACATTGCAATTAAAA
* * *
43717749 AGATTGAAGCCACAACGGTGAATCTTACTTCACTGGC-GTACAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAATGGA-CAGATTGAAGCTACAA
43717813 CGGTGAATC-TAGCTCTCCCGACATTGCAATTAAAA
65 CGGTGAATCTTAGCTC-CCCGACATTGCAATTAAAA
* *
43717848 AAATTGAAGCCACAAC-GCGAATCTTACTTCTCTGGCGGTGCAATGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAATGG-ACAGATTGAAGCTACAA
* ** * *
43717912 CGATGAATCTTATTTCCCTGACATTGCTATTAAAA
65 CGGTGAATCTTAGCTCCCCGACATTGCAATTAAAA
* * *
43717947 AGATTGAAGCAAGAATGGCGAATCT
1 AGATTGAAGCCACAACGGCGAATCT
43717972 GGCTCCACGA
Statistics
Matches: 356, Mismatches: 56, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
98 28 0.08
99 178 0.50
100 147 0.41
101 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (99 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAATGGACAGATTGAAGCTACAAC
GGTGAATCTTAGCTCCCCGACATTGCAATTAAAA
Found at i:43738795 original size:100 final size:100
Alignment explanation
Indices: 43738463--43739462 Score: 1101
Period size: 100 Copynumber: 10.0 Consensus size: 100
43738453 NNNNNNNNNN
* * * *
43738463 AAAGATTGAAGCCACAATC-GTGAATCTTACTTCCCTGGCTGTGCAATGGAACAAATTGAAGGTA
1 AAAGATTGAAGCCACAA-CGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* ** *
43738527 CAACGGGGAATCTTACT-CCACGACATTGCAATTAA
65 CAACGGTGAATCTGGCTCCCTCGACATTGCAATTAA
* * * *
43738562 AAAGATTGAAGCCGCGACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
** * * * *
43738627 AAAAGCGAATCTTGCT-GCACGACATTGCAATTAA
66 AACGGTGAATCTGGCTCCCTCGACATTGCAATTAA
* * *
43738661 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCATATTGAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
*
43738726 AACGATGAATCTGGCTCCCTCGACATTGCAATTAA
66 AACGGTGAATCTGGCTCCCTCGACATTGCAATTAA
* ** * *
43738761 AAA-ATTTGAAGCCACAACGGCGAATCTTACTTCCCTGATGGTACAGTAGAACAGA-TGCAAGCT
1 AAAGA-TTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCT
* *
43738824 ACAACGATGAATCTGGCTGCCCT-AACATTGCAATTAA
64 ACAACGGTGAATCTGGCT-CCCTCGACATTGCAATTAA
* * * * *
43738861 AAAGATTGAAG--ACAACTGTGAATCTTACTTCCCTTGCAGTGCAGTAGAGCAGATTGAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
* ** * *
43738924 AACGCTGAATCCTGTTTGCCT-GACATTGTAATTAA
66 AACGGTGAAT-CTGGCTCCCTCGACATTGCAATTAA
* * * * *
43738959 AAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGTGGTGCAGTGGAACAGATTAAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
*** * * *
43739024 AACGACAAATCTTGCT-CCACGACATTGTAATTAA
66 AACGGTGAATCTGGCTCCCTCGACATTGCAATTAA
* *
43739058 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
*
43739123 AATGGTGAATCTGGCTCTCC-CGACATTGCAATTAA
66 AACGGTGAATCTGGCTC-CCTCGACATTGCAATTAA
* *
43739158 AAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
** *
43739223 AACGGTGAATCTTGTTTCTCC-C-ACATTGTAATTAA
66 AACGGTGAATC-TGGCTC-CCTCGACATTGCAATTAA
* * * *
43739258 AATGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
* * * ** *
43739323 AACGGTAAATCTTGCTTCCTAAACATTGTAATTAA
66 AACGGTGAATCTGGCTCCCTCGACATTGCAATTAA
* * * * * *
43739358 AAATACTGAGGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTTGGAAACAGATTCAAGCT
1 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAG-TGG-AACAGATTGAAGCT
* ** *
43739423 AGAACGGTGAATCTTACTTCCC-CGACACTGCAATTAA
64 ACAACGGTGAATCTGGC-TCCCTCGACATTGCAATTAA
43739460 AAA
1 AAA
43739463 TATTNNNNNN
Statistics
Matches: 764, Mismatches: 118, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
98 81 0.11
99 250 0.33
100 372 0.49
101 18 0.02
102 40 0.05
103 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (100 bp):
AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
AACGGTGAATCTGGCTCCCTCGACATTGCAATTAA
Found at i:43739225 original size:50 final size:50
Alignment explanation
Indices: 43738463--43739444 Score: 481
Period size: 50 Copynumber: 19.7 Consensus size: 50
43738453 NNNNNNNNNN
* * * *
43738463 AAAGATTGAAGCCACAATC-GTGAATCTTACTTCCCTGGCTGTGCAATGGA
1 AAAGATTGAAGCTACAA-CGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* * ** * **
43738513 ACAA-ATTGAAGGTACAACGGGGAATCTTAC-TCCAC-GACATTGCAATTAA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACGGTGCAGTGGA
** * * *
43738562 AAAGATTGAAGCCGCGACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* ** * * * * ** * **
43738612 ATAGATTGAAGCTACAAAAGCGAATCTTGCTGCAC-GACATTGCAATTAA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* * *
43738661 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
** * * ** ** * *
43738711 GCATATTGAAGCTACAACGATGAATCTGGC-TCCCTCGACATTGCAAT-TA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACGGTGCAGTGGA
* * * * * *
43738760 AAAAATTTGAAGCCACAACGGCGAATCTTACTTCCCTGATGGTACAGTAGA
1 AAAGA-TTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* * ** * * ** * **
43738811 ACAGA-TGCAAGCTACAACGATGAATCTGGCTGCCCTAACATTGCAATTAA
1 AAAGATTG-AAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* * *
43738861 AAAGATTGAAG--ACAACTGTGAATCTTACTTCCCTTG-CAGTGCAGTAGA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCC-TGACGGTGCAGTGGA
** * * ** * ** * * **
43738909 GCAGATTGAAGCTACAACGCTGAATCCTGTTTGCCTGACATTGTAATTAA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* * * * **
43738959 AAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGTGGTGCAGTGGA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* * *** * ** * * **
43739009 ACAGATTAAAGCTACAACGACAAATCTTGC-TCCAC-GACATTGTAATTAA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACGGTGCAGTGGA
*
43739058 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-AGCGGTGCAGTGGA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGA-CGGTGCAGTGGA
** * ** ** * **
43739108 GCAGATTGAAGCTACAATGGTGAATCTGGCTCTCCC-GACATTGCAATTAA
1 AAAGATTGAAGCTACAACGGTGAATCTTACT-TCCCTGACGGTGCAGTGGA
* * * *
43739158 AAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* ** * ** * * *
43739208 ACAGATTGAAGCTACAACGGTGAATCTTGTTTCTCC-CACATTGTAAT-TA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACGGTGCAGTGGA
* * * *
43739257 AAATGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGA
1 AAA-GATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
* * * ** * * **
43739308 ACAA-ATTGAAGCTACAACGGTAAATCTTGCTT-CCTAAACATTGTAATTAA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACGGTGCAGTGGA
* * *
43739358 AAATACTGAGGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTTGGA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAG-TGGA
* *
43739409 AACAGATTCAAGCTAGAACGGTGAATCTTACTTCCC
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCC
43739445 CGACACTGCA
Statistics
Matches: 654, Mismatches: 244, Indels: 66
0.68 0.25 0.07
Matches are distributed among these distances:
48 36 0.06
49 131 0.20
50 428 0.65
51 29 0.04
52 30 0.05
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (50 bp):
AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGA
Found at i:43739707 original size:50 final size:50
Alignment explanation
Indices: 43739633--43739899 Score: 197
Period size: 50 Copynumber: 5.3 Consensus size: 50
43739623 GCAATTAAAA
* * * *
43739633 AGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTACAGTGGAAC
1 AGATTGAAGCTACAACGACGAATCTTACTTCCCTAGCGGTACAGTGGAAC
* * * ** *
43739683 AGATTGAAGCTA-AAGCGACGAATCTTGCTT-CCTAAACATTGTA-A-TTAAAA
1 AGATTGAAGCTACAA-CGACGAATCTTACTTCCCT-AGC--GGTACAGTGGAAC
* *
43739733 AGATTGAAGCTACAACGACGAATCTTACTTCCCTAGCAGCACAGTGGAAC
1 AGATTGAAGCTACAACGACGAATCTTACTTCCCTAGCGGTACAGTGGAAC
* ** * * * ** *
43739783 AGATTAAAGCTACAACGGTGAATCTTATTTCCC-CGACATTGTA-A-TTAAAA
1 AGATTGAAGCTACAACGACGAATCTTACTTCCCTAG-C--GGTACAGTGGAAC
* * * *
43739833 AGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCTGTGGAGC
1 AGATTGAAGCTACAACGACGAATCTTACTTCCCTAGCGGTACAGTGGAAC
43739883 AGATTGAAGCTACAACG
1 AGATTGAAGCTACAACG
43739900 GCAAATTCGG
Statistics
Matches: 162, Mismatches: 41, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
48 4 0.02
49 7 0.04
50 138 0.85
51 8 0.05
52 5 0.03
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTGAAGCTACAACGACGAATCTTACTTCCCTAGCGGTACAGTGGAAC
Found at i:43739748 original size:100 final size:100
Alignment explanation
Indices: 43739570--43742685 Score: 3203
Period size: 100 Copynumber: 31.3 Consensus size: 100
43739560 NNNNNNNTAT
* * ***
43739570 AGTGGAGCAGAGTGAAGCTACAACGACAAATCTTGCTTGGCTCTCCCGACATTGCAATTAAAAAG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTT--C-CT--CGACATTGCAATTAAAAAG
* *
43739635 ATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTAC
61 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
** ** *
43739675 AGTGGAACAGATTGAAGCTA-AAGCGACGAATCTTGCTTCCTAAACATTGTAATTAAAAAGATTG
1 AGTGGAACAGATTGAAGCTACAA-CGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTG
* * * * **
43739739 AAGCTACAACGACGAATCTTACTTCCCTAGCAGCAC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* ** * *
43739775 AGTGGAACAGATTAAAGCTACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* *
43739840 AGCCACAACGACGAATCTTACTTCCCTAGCGGTGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * ** * * * * * *
43739875 TGTGGAGCAGATTGAAGCTACAACGGCAAAT-TCGGCTCCCCCGACGTTGAAATGAAAAAGATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCT-TGCTTCCTCGACATTGCAATTAAAAAGATTG
* ** *
43739939 AAGCCAGAACATCGAATCTTACTTCCCTGGCGGTGT
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * * *
43739975 AGTAGAACAGATTGAAGTTACAACGGTGAATTTTGTTTTGC-CGACATTGTAATTAAAGAA-ATT
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-CTTCCTCGACATTGCAATTAAA-AAGATT
* * *
43740038 GTAAGACCACAACAGTGAATCTTACTTCCCTGGCGGTAC
64 G-AAG-CCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* ** * * *
43740077 AGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATAGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* * * *
43740142 AGCCACAACAGCGAATCTTTCTTCCCTGGAGGTGT
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * *
43740177 AGTGGAACAAATTGAAGCTACAACGCTGAATCTTGTTTCC-CTGACATTGCAATTAAAATGATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTG
** *
43740241 AAGCCACAACAACGAATCTTACTTCTCTGGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * * * * *
43740277 AATGGAGCATATTAAAGCTACAACGATGAATCTGGCTGCCCCGACATTGCAATTAAAAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* * **
43740342 AGCCACAACTGTGAATCTTACTTCCCTGGTAGTGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * *
43740377 AGT-G----GA---AAGCTACAACGGTAAATCTTGTTTCC-CTGACATTGTAATTAAAAAGATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTG
* * * *
43740433 AAGTCACAATGGCGAATCTTACTTCTCTGGTGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* ** * ** * *
43740469 AGTGGAACAGATTGAAGCTATAACGGCAAATCTTAC-TCAACGACATTGTAATTAAGAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* ** * *
43740533 AGCCATAACGGTTAACCTTACTTCCCTGGCGGTGT
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * ** * * *
43740568 ACTGGAGCAGATTGAAGCTACAATTGTGAATCTTGTTTCCCCGACATTACAATTAAAAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* *
43740633 AGCCATAATGGCGAATCTTACTTCCCTGGCGGTGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * ** *
43740668 AGTGGAACAAATTTAAGCTACAACGGTGAATCTTACTTCCTAAACATTGTAATTAAAAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* * * * * *
43740733 AGCTACAATGGCAAATCTTACTTCTCTGGCAGCGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * ** * * *
43740768 AGTGGAACAGATTCAAGCTACAACGGGGCATCTTATTTTCC-CCACATTTCAATTAAAAATATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTTCCTCGACATTGCAATTAAAAAGATTG
*
43740832 AAGCCACAACGGCGAATCTTACTTCTCTGGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * * * *
43740868 AGTGGAATAGATCGAAGCTACATCGGTGAAT-TTGCTCCCCCGACATTAC-ATTAACAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* *
43740931 AGCCACAACGGTGAATCTTACTTCCCTGGCGTTGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * ** * * *
43740966 AATGGAACAGGTTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAATATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* * *
43741031 GGCCACAATGGCGAATCTTACTTCCCTGGCAGTGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * *
43741066 AGTGGAACAAATTGAAGATACAACGGTGAATCTTGC-TCCACGACTTTGCAATTAAAAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* * **
43741130 AGGCACAACGGCGAATCTTACTTCCCTGGCAGTAT
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * * *
43741165 AGTAGAGCAGATTGAAGCTGCAACGATGAATCTGGCTCTCC-CGACATTGCAATTAAAAAGTTTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT-TCCTCGACATTGCAATTAAAAAGATTG
43741229 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * ** * *
43741265 AGTGGAACAGATTCAAGCTACAAAGGTGAATCTTATTTCC-CTAACATTGCAATTAAAAAGTTTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTG
*
43741329 AAGCCACAACGGCGAATCTTACTTCTCTGGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* ** * *
43741365 AGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTCC-CTAACATTGCAATTAAAAAGTTTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTG
* * *
43741429 AAGCCACAGCGACGAATCTTACTTCTCTGGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * ** * *
43741465 AGTGGAACAGATTCAAGCTACAACAGTGAATCTTATTTCC-CTAACATTGCAATTAAAAAGATTA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTG
* *
43741529 AAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * *
43741565 AGTGGAATAGATTGAACCTACAACAGCGAATCTTGC-TCCACGACATTGCAATTAAAAAGATT-A
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* ** *
43741628 AACCTACAACGGTAAATCTTACTTCCCTGGCGGTGT
66 AGCC-ACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * * * *
43741664 AGT-GAAGCATATTGAAGCTACAACAGTTAATCTTGTTTCCCCGACAATGCAATGAAAAAGATTG
1 AGTGGAA-CAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTG
* * **
43741728 AAGCCACAATGGTGAATCTTACTTCCCTCACGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* ** *
43741764 AGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTTCCTAAACATTGTAATTAAAAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* * * ** *
43741829 AGCTACAACGGTGAATTTTACTTCCCCAGCGGCGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* **
43741864 AGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTTCCT-GACATTGCAATTAAAAAGATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTTCCTCGACATTGCAATTAAAAAGATTG
**** * *
43741928 AAGCCACAACAAAAAATCTTACTTTCCTAGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * *
43741964 AGTAGATCAGA-TGAAAGCTACAACGGCGAATCTGGC--CCTCCGACATTGCAATTAAAAATATT
1 AGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGCTTCCT-CGACATTGCAATTAAAAAGATT
* *
43742026 GAAGCCACAACGACGGATCTTACTTCCCTGGCGGTGC
64 GAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * *
43742063 AGTGGAACAGGTTGAAGCTACAACGGTGAATCTTG-TTTCTCCGACATTGTAATTAAAAAGATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCT-CGACATTGCAATTAAAAAGATTG
* *
43742127 AAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * *
43742163 AGTGGAACAAATTGAAGGTACAACGG-GAAATCTTGC-TCCACGACATTGCAATTAAAAA-ATTG
1 AGTGGAACAGATTGAAGCTACAACGGTG-AATCTTGCTTCCTCGACATTGCAATTAAAAAGATTG
* *
43742225 AAACCACAATGGCGAATCTTACTTCCCTGGCGGTGC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * * * *
43742261 AGTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCCGACATTGCAATTAAAAAGATTGA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
* * * **
43742326 AGCCACAACTGTGAATTTTACTTCCCTGGTAGTGC
66 AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
** * * *
43742361 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCC-CTAACATTGTAATTAAAAAGATTA
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTG
* * * * *
43742425 AAGGCACAATGGTGAATCTTACTTCTCTGGCGGTAC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * ** * *
43742461 AGTGGAATAGATTGAAGCTACAACGTTGAATCTTATTTCC-CTAACATTGCTATTAAAAAGATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTG
* * * * *
43742525 AAGCCACAATGGTGAATATTACTTCTCTGGCGGTAC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* * *
43742561 AGTGGAACATATTGAAACTACAACGGCGAATCTTGC-TCCAT-GACATTGCAATTAAAAAGATTG
1 AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-TCGACATTGCAATTAAAAAGATTG
* * * *
43742624 AAGCCACACCGGTGAATCTTACTTCCCTGGCAGTAC
65 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
* *
43742660 AGTGGAACAAATTGAAGGTACAACGG
1 AGTGGAACAGATTGAAGCTACAACGG
43742686 GAAATCTNNN
Statistics
Matches: 2545, Mismatches: 415, Indels: 108
0.83 0.14 0.04
Matches are distributed among these distances:
91 1 0.00
92 75 0.03
93 1 0.00
95 1 0.00
97 5 0.00
98 147 0.06
99 460 0.18
100 1704 0.67
101 38 0.01
102 78 0.03
103 1 0.00
104 2 0.00
105 32 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (100 bp):
AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGA
AGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
Found at i:43740194 original size:50 final size:50
Alignment explanation
Indices: 43740033--43740219 Score: 121
Period size: 50 Copynumber: 3.7 Consensus size: 50
43740023 GTAATTAAAG
* * * ** *
43740033 AAATTGTAAGACCACAACAGTGAATCTTACTTCCCTGGCGGTACAGTGGAGC
1 AAATTG-AAG-CCACAACAGCGAATCTTTCTTCCCTGGAGGTGTAGTGGAAC
* * * * * * ** * * *
43740085 AGATTGAAGCTACAACGGCAAATCTTGCTTCCC-CGACATTGTAAT-TAAA
1 AAATTGAAGCCACAACAGCGAATCTTTCTTCCCTGGA-GGTGTAGTGGAAC
*
43740134 AAGATAGAAGCCACAACAGCGAATCTTTCTTCCCTGGAGGTGTAGTGGAAC
1 AA-ATTGAAGCCACAACAGCGAATCTTTCTTCCCTGGAGGTGTAGTGGAAC
*
43740185 AAATTGAAGCTACAAC-GCTGAATCTTGT-TTCCCTG
1 AAATTGAAGCCACAACAGC-GAATCTT-TCTTCCCTG
43740220 ACATTGCAAT
Statistics
Matches: 99, Mismatches: 30, Indels: 14
0.69 0.21 0.10
Matches are distributed among these distances:
49 5 0.05
50 79 0.80
51 10 0.10
52 5 0.05
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (50 bp):
AAATTGAAGCCACAACAGCGAATCTTTCTTCCCTGGAGGTGTAGTGGAAC
Found at i:43740241 original size:50 final size:51
Alignment explanation
Indices: 43740086--43742652 Score: 371
Period size: 50 Copynumber: 51.7 Consensus size: 51
43740076 CAGTGGAGCA
* * * * * * *
43740086 GATTGAAGCTACAACGGC-AAATCTTGCTTCCCCGACATTGTAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * ** * * *
43740136 GATAGAAGCCACAACAGC-GAATCTTTCTTCCCTGGA-GGTGTAGTGGAACAA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCT-GACATTGCAAT-TAA-AAT
* **
43740187 -ATTGAAGCTACAAC-GCTGAATCTTGTTTCCCTGACATTGCAATTAAAAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * ** * **
43740236 GATTGAAGCCACAACAAC-GAATCTTACTTCTCTGGCGGTGCAATGGAGCAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * ** * * *
43740287 -ATTAAAGCTACAAC-GATGAATCTGGCTGCCCCGACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* ** * * *
43740336 GATTGAAGCCACAACTG-TGAATCTTACTTCCCTGGTAGTGC-AGT----G
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * ** * *
43740381 GA---AAGCTACAAC-GGTAAATCTTGTTTCCCTGACATTGTAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* ** * **** * * *
43740428 GATTGAAGTCACAATGGC-GAATCTTACTTCTCTGGTGGTGCAGTGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * * * *
43740478 GATTGAAGCTATAACGGC-AAATCTTAC-TCAAC-GACATTGTAATTAAGAA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTC-CCTGACATTGCAATTAA-AAT
* * * * * ** * * * **
43740527 GATTGAAGCCATAAC-GGTTAACCTTACTTCCCTGGCGGTGTACTGGAGCA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* ** ** * * *
43740577 GATTGAAGCTACAATTG-TGAATCTTGTTTCCCCGACATTACAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* ** * ** * *
43740627 GATTGAAGCCATAATGGC-GAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAA-AAT
* * * * * *
43740678 -ATTTAAGCTACAAC-GGTGAATCTTACTT-CCTAAACATTGTAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCT-GACATTGCAATTAAAAT
* ** * * * ** * * *
43740727 GATTGAAGCTACAATGGC-AAATCTTACTTCTCTGGCAGCGCAGTGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * ** * * * *
43740777 GATTCAAGCTACAAC-GGGGCATCTTATTTTCCC-CACATTTCAATTAAAAAT
1 GATTGAAGCCACAACAGCTGAATCTTA-CTTCCCTGACATTGCAATT-AAAAT
* * * ** * **
43740828 -ATTGAAGCCACAACGGC-GAATCTTACTTCTCTGGCGGTGC-AGTGGAAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * * * * * *
43740876 AGATCGAAGCTACATC-GGTGAAT-TTGCTCCCCCGACATTAC-ATTAACAA-
1 -GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAA-AAT
* * * * *
43740925 GATTGAAGCCACAAC-GGTGAATCTTACTTCCCTGGCGTTGCAATGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * * * *
43740975 GGTTGAAGCTACAAC-GGTGAATCTTATTTCCCCGACATTGTAATTAAAAAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATT-AAAAT
* ** * * * *
43741026 -ATTGAGGCCACAATGGC-GAATCTTACTTCCCTGGCAGTGCAGTGGAACAA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAA-AAT
** * * * *
43741076 -ATTGAAGATACAAC-GGTGAATCTTGC-TCCAC-GACTTTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCC-CTGACATTGCAATTAAAAT
* * * * * *
43741124 GATTGAAGGCACAACGGC-GAATCTTACTTCCCTGGCA--GTATAGTAGAGCA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCA-ATTA-A-AAT
** * ** *
43741174 GATTGAAGCTGCAAC-GATGAATCTGGCTCTCCC-GACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACT-TCCCTGACATTGCAATTAAAAT
* * * ** * * *
43741224 GTTTGAAGCCACAACGGC-GAATCTTACTTCCCTGGCGGTGCAGTGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * * * *
43741274 GATTCAAGCTACAA-AGGTGAATCTTATTTCCCTAACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * * ** * * *
43741324 GTTTGAAGCCACAACGGC-GAATCTTACTTCTCTGGCGGTGCAGTGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * * * *
43741374 GATTCAAGCTACAAC-GGTGAATCTTATTTCCCTAACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * * ** * * *
43741424 GTTTGAAGCCACAGC-GAC-GAATCTTACTTCTCTGGCGGTGCAGTGGAACA-
1 GATTGAAGCCACAACAG-CTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * * *
43741474 GATTCAAGCTACAACAG-TGAATCTTATTTCCCTAACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* ** * * ** * **
43741524 GATTAAAGCCACAATGGC-GAATCTTACTTCTCTGGCGGTGC-AGTGGAAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* *
43741573 AGATTGAA-CCTACAACAGC-GAATCTTGC-TCCAC-GACATTGCAATTAAAAA
1 -GATTGAAGCC-ACAACAGCTGAATCTTACTTCC-CTGACATTGCAATTAAAAT
* * * * ** * * * *
43741623 GATT-AAACCTACAAC-GGTAAATCTTACTTCCCTGGCGGTGTAGTGAAGCAT
1 GATTGAAGCC-ACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAA-AAT
* * ** * * * *
43741674 -ATTGAAGCTACAACAG-TTAATCTTGTTTCCCCGACAATGCAATGAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * ** * *
43741723 GATTGAAGCCACAA-TGGTGAATCTTACTTCCCTCACGGTGCAGTGGAACAA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAA-AAT
* * * * * *
43741774 -ATTGAAGCTACAAC-GGTGAATCTTGCTT-CCTAAACATTGTAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCT-GACATTGCAATTAAAAT
* * * * *** * * *
43741823 GATTGAAGCTACAAC-GGTGAATTTTACTTCCC-CAGCGGCGCAGTGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGA-CATTGCAAT-TAAAAT
* * * * * *
43741873 GATTCAAGCTACAAC-GGTGAATCTTATTTTCCTGACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
*** * ** * *
43741923 GATTGAAGCCACAACA-AAAAATCTTACTTTCCT-AGCGGTGC-AGT-AGAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGA-CATTGCAATTAAAAT
* * ** *
43741971 CAGA-TGAAAGCTACAACGGC-GAATCTGGC--CCTCCGACATTGCAATTAAAAAT
1 --GATTG-AAGCCACAACAGCTGAATCTTACTTCC-CTGACATTGCAATT-AAAAT
* * ** * * *
43742023 -ATTGAAGCCACAAC-GAC-GGATCTTACTTCCCTGGCGGTGCAGTGGAACA-
1 GATTGAAGCCACAACAG-CTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * ** * *
43742072 GGTTGAAGCTACAAC-GGTGAATCTTGTTTCTCC-GACATTGTAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTC-CCTGACATTGCAATTAAAAT
** * * * *
43742122 GATTGAAGCCACAATGGC-GAATCTTACTTCCCTGGCAGTGCAGTGGAACAA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAA-AAT
** * *
43742173 -ATTGAAGGTACAAC-G-GGAAATCTTGC-TCCAC-GACATTGCAATTAAAA-
1 GATTGAAGCCACAACAGCTG-AATCTTACTTCC-CTGACATTGCAATTAAAAT
* * ** * ** * * *
43742220 AATTGAAACCACAATGGC-GAATCTTACTTCCCTGGCGGTGCAGTGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * ** * * *
43742270 GATTCAAGCTACAAC-GATGAATCTGGCTGCCCCGACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * ** * * * *
43742320 GATTGAAGCCACAACTG-TGAATTTTACTTCCCTGGTAGTGCAGTGGAACA-
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * * * *
43742370 GATTGAAGCTACAAC-GGTGAATCTTATTTCCCTAACATTGTAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * * * * ** * * **
43742420 GATTAAAGGCACAA-TGGTGAATCTTACTTCTCTGGCGGTAC-AGTGGAAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * * * *
43742469 AGATTGAAGCTACAAC-GTTGAATCTTATTTCCCTAACATTGCTATTAAAAA
1 -GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* * * * * ** * * * *
43742520 GATTGAAGCCACAA-TGGTGAATATTACTTCTCTGGCGGTACAGTGGAACAT
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAAT-TAAAAT
* * * * * *
43742571 -ATTGAAACTACAACGGC-GAATCTTGC-TCCATGACATTGCAATTAAAAA
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
* *
43742619 GATTGAAGCCAC-ACCGGTGAATCTTACTTCCCTG
1 GATTGAAGCCACAACAGCTGAATCTTACTTCCCTG
43742653 GCAGTACAGT
Statistics
Matches: 1734, Mismatches: 621, Indels: 324
0.65 0.23 0.12
Matches are distributed among these distances:
41 1 0.00
42 26 0.01
43 2 0.00
45 2 0.00
47 6 0.00
48 68 0.04
49 271 0.16
50 1259 0.73
51 86 0.05
52 13 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (51 bp):
GATTGAAGCCACAACAGCTGAATCTTACTTCCCTGACATTGCAATTAAAAT
Found at i:43743034 original size:100 final size:100
Alignment explanation
Indices: 43742803--43743087 Score: 281
Period size: 100 Copynumber: 2.9 Consensus size: 100
43742793 TCCACGATAT
* * * * * * * * *
43742803 TGCAATTAAAAA-ATTGAAGCCACAATGGCGAACCTTACTTCCCTGGCGGTATAGTGGAGCAGAT
1 TGCAATTAAAAAGATTGAAACCAGAACGGTGAATCATACTTCACTGGCGGTGTAGTGGAACAGAT
* *
43742867 TGAAGCTACAATGATGAATCTGGCTCCCTCAACAT
66 TGAAGCTACAACGATGAATCTGGCTCCCTCAACAA
* * * * *
43742902 TGCAATTAAAAGGTTTGAAGCCAGAACGGTGAATCATACTTTACTGGCGGTGCAGTGGAACAGAT
1 TGCAATTAAAAAGATTGAAACCAGAACGGTGAATCATACTTCACTGGCGGTGTAGTGGAACAGAT
*
43742967 TCAAGCTACAACGATGAATCTGGCTGCCC-CAACAAA
66 TGAAGCTACAACGATGAATCTGGCT-CCCTCAAC-AA
* * * * * * * *
43743003 T-CAATTAAAAAGATTGAAACTACG-ACTGTGAATCTTACTTCCCTTGCAGTGTGGTGGAATAGA
1 TGCAATTAAAAAGATTGAAACCA-GAACGGTGAATCATACTTCACTGGCGGTGTAGTGGAACAGA
*
43743066 TTGAAGCTACAACGGTGAATCT
65 TTGAAGCTACAACGATGAATCT
43743088 TGTTTCCCTG
Statistics
Matches: 152, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
99 11 0.07
100 135 0.89
101 6 0.04
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (100 bp):
TGCAATTAAAAAGATTGAAACCAGAACGGTGAATCATACTTCACTGGCGGTGTAGTGGAACAGAT
TGAAGCTACAACGATGAATCTGGCTCCCTCAACAA
Found at i:43743442 original size:199 final size:199
Alignment explanation
Indices: 43743212--43744020 Score: 919
Period size: 199 Copynumber: 4.1 Consensus size: 199
43743202 NNNNNNNTTA
* *
43743212 AAGCCACAA-AGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGACG
1 AAGCCACAACA-GCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGATG
* * * * *
43743276 AATCTTGCTCCACAATATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGT
65 AATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGG
* * * * ***
43743341 TGGTACAGTGGAGCAGATTGAAGCTATAACGGTAAATCTTGCCTCCCCGACATTGTAATTAAAAA
130 CGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAA
43743406 GATTG
195 GATTG
* * * *
43743411 AAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGGACAGATTCAAGCTACAACGTTGA
1 AAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGATGA
* ** * * * *
43743476 ACCTTATTTCCCCGACATTGCAATTAAAAAGATTGAAGCTACAATGGCAAATCTTACTTCCCTGG
66 ATCTT-GCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGG
**** * * * *
43743541 CAACGCAGTGGAACAGATTTAAGCTACAACGGTGCATCTTATTTTCCCGACATT-TCGATTAAAA
130 CGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGT-AATTAAAA
* *
43743605 ATATTA
194 AGATTG
* * * * * * * *
43743611 AAGCCACAACGGCGAATCTTACTTCTCTGGCGGTGCAGTAGAGCAGATCGAAGCTACATCGGTGA
1 AAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGATGA
* * * * *
43743676 ATCTGGCTCCCCCGACATTGCAATTAACAAGATTGAATCCACAACGGTGAATCTTACTT-CCTGG
66 ATCTTGCT-CCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGG
* * * * *
43743740 CGGTGCAGTGGAACA-AGTTGATGCTACAATGGTGAATCTTATTTCCCCGACATTGCAAGTAAAA
130 CGGTACAGTGGAACAGA-TTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAA
*
43743804 ATATTG
194 AGATTG
* ** * *
43743810 AGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGA-GA
1 AAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGATG-
* * *
43743874 AATCTTGCTCCATGACATTGTAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGG
65 AATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGG
* * *
43743939 CGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCTCTGACATTGCT-ATTAAAA
130 CGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTG-TAATTAAAA
43744003 AGATTG
194 AGATTG
*
43744009 AAGCTACAACAG
1 AAGCCACAACAG
43744021 TGAACCTTGC
Statistics
Matches: 504, Mismatches: 96, Indels: 20
0.81 0.15 0.03
Matches are distributed among these distances:
198 45 0.09
199 255 0.51
200 204 0.40
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (199 bp):
AAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGATGA
ATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGC
GGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAG
ATTG
Found at i:43743537 original size:50 final size:50
Alignment explanation
Indices: 43743258--43749049 Score: 2580
Period size: 50 Copynumber: 116.1 Consensus size: 50
43743248 AGTGGAACAA
** * * * * *
43743258 ATTGAAGCTACAACGACGAATCTTGC-TCCACAATATTACAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * **** * * ** **
43743307 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGTTGGTACAGTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * *
43743357 ATTGAAGCTATAACGGTAAATCTTGCCTCCCCGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * *** *
43743407 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGGACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * *
43743457 ATTCAAGCTACAACGTTGAACCTTATTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** * * ** * ** *
43743507 ATTGAAGCTACAATGGCAAATCTTACTTCCCTGGCAACGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * *
43743557 ATTTAAGCTACAACGGTGCATCTTATTTTCCCGACATTTCGATTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** * **
43743607 ATTAAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTGC-AGTAGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTA-AAAAG
* * ** * *
43743657 ATCGAAGCTACATCGGTGAATCTGGCTCCCCCGACATTGCAATTAACAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * ** * * *
43743707 ATTGAATCCACAACGGTGAATCTTACTT-CCTGGCGGTGCAGTGGAACAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
* * * * *
43743757 -TTGATGCTACAATGGTGAATCTTATTTCCCCGACATTGCAAGTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * * * * *
43743806 ATTGAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
* * * ** *
43743856 ATTGAAGGTACAACGAG-AAATCTTGC-TCCATGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACG-GTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * ** *
43743905 ATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * *
43743955 ATTGAAGCTACAACGGTGAATCTTATTTCTCTGACATTGCTATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * *
43744005 ATTGAAGCTACAACAGTGAACCTTGC-TCCACGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** * * ** *
43744054 ATTAAAACCACAATGGTGAGTCTTACTTCCCTGGTAGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** * * *
43744104 ATTGAAGCTACAACAGTGAATCTTGTTTCCCTGACATTGTAATTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** ** *
43744154 ATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAATGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** * * * *
43744204 ATTGAAGCTATAACGGCAAATCTTGC-TCCACGACATTGTAATTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * ** *** ** **
43744253 ATTGAAGCCATAACGGTGAATCTTACTTCCCTGGCGGTGTTCTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* **
43744303 ATTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * ** * * *
43744353 ATTGAAGCCACAA-TGTCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-
1 ATTGAAGCTACAACGGT-GAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
* * *** *
43744403 ATTTAAGCTACAACGGCGAATCTTACTTCCTAAACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** ** ** * * ** *
43744453 ATTGAAGCTACAGTGGCAAATCTTACTTCCCCGGTAGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * *
43744503 ATTCAAGCTACAACGGTGTATCTTATTTTCCCGACATTTCAGTTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** * * ** * * **
43744553 ATTGAAGCCACAACGACGAATCTTACTT-CTCTAGCGGTGCAGTGGAGTAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCAAT-TAAAAAG
** * * ** * * *
43744603 ATCAAAGCTACATCGGCGAATCTGGCTCCCCCGACATTACAATTAACAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** **
43744653 ATTAAAGCCACAACGGTGAATCTTACTTCCCTG-GGTGTGCAA-TAGAGTAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACAT-TGCAATTA-AAAAG
* ** *
43744703 ATTGAAGCTACAACGGTTAATCTGGCTCCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * ** *
43744753 TTTAAAGCCACAACGGGGAATCTTACTT-CCCTAGCGGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCAATTAAAAAG
**
43744803 ATTGAAGCTACAACGGTGAATCTGGC-TCTCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTC-CCCGACATTGCAATTAAAAAG
* *** * * ** * * ** *
43744853 ATTGAAGCCACAACGACAAATCTTACTTCCCTGGCGGTACAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* **
43744903 ATTGAAGCTACAACGGTGAACCTTGTTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** * * *
43744953 ATTCAAGCCACAATGATGAATCTTACTTCCCTGGCCGTGCAGTGGAATAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
* *
43745003 ATTGAAGCTACAACGGTGAATCTTGC-TCCACGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** * * ** **
43745052 ATTGAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTACAGTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* *** *
43745102 AGTGAAGCTACAACGACAAATCTTGCTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * * ** * ** **
43745152 ATTAAAACCACAACGGCAAATCTTAGTT-CCCTAGCGGTGTAGA-GGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCA-ATTAAAAAG
**
43745202 ATTGAAGCTACAACGGTGAATCTGGC-TCCCCTGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCC-GACATTGCAATTAAAAAG
* * * * **** * * ** * *
43745252 ATTGAAGCCATAACGGCGAATCTTACTTCCCTGGTGGTGGAGTGGAACAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* *
43745302 ATTAAAGCTACAACGGTGAATCTTA-TTCCCCTGACATTGCTATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCC-GACATTGCAATTAAAAAG
* * * * * ** * ** * *
43745352 ATTGAAGCCACAAGGGTGAATCTTACTTCTCTGGCGGTGCAGTGGAACAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * *
43745402 ATTGAAGCTACAACAGCGAACCTTGC-TCCACGACATTCCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * ** **
43745451 ATTGAAACCACAATGGTAAATCTTACTT-CCCTAGCGGTGCAGTGGAGTAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCAATTAAAAAG
** *
43745501 ATTGAAGCTACAACGGTGAATCTTGTTTCTCCC-ACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTC-CCCGACATTGCAATTAAAAAG
* * * * * * *** * * *
43745551 ATTGAAACCACAATGGTGAATCTTACTTTCCTGGCGGAGCAGTGGAACAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
* **** * *
43745601 ATTGAAGCTACAACGGTAAATCTTACTTCTTAAACATTGTAATTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * ** * ** *
43745651 ACTGAGGCTAGAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * *
43745701 ATTCAAGCTAGAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * ** **
43745751 ATTAAAG-AAC-A-GTGTCGAATCTTACTT-CCCTAGCGA-TGCAGTGGAGCAG
1 ATTGAAGCTACAACG-GT-GAATCTTACTTCCCCGA-C-ATTGCAATTAAAAAG
* ** * *
43745800 ATCGAAGCTACAACGGTGAATCTGGC-TCCCTCGATATTGAAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTAAAAAG
* * * * * * ** ** *
43745850 ATTGAAGCCAGAGCAGCGAATCTTACTTCCCTGGA-GGTG-AAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAA-TTAAAAAG
* * **
43745900 ATTGAAGCTATAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * * * * *
43745950 ATTGAAACCACAATGGCGAATCTTACTTCACTGGC-TGTACAATGGAACAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACAT-TGCAAT-TAAAAAG
* * *
43746000 ATTGAAGGTACAACGGGGAATCTTAC-TCCACGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** * * * * ** * ** *
43746049 ATTGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** * * * * *
43746099 ATTGAAGCTACAAAAGCGAATCTTGC-TGCACGACATTGCAATTTAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * * ** ** *
43746148 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* **
43746198 ATTGAAGCTACAACGATGAATCTGGC-TCCCTCGACATTGCAATTAAAAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTAAAAAG
* * ** * * *
43746247 ATTTGAAGCCACAACGGTGAATCTTACTTCCCTGACGGTAC-AGTAGAACAG
1 A-TTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTA-AAAAG
* ** * *
43746298 A-TGCAAGCTACAACGATGAATCTGGCTGCCCCAACATTGCAATTAAAAAG
1 ATTG-AAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * **
43746348 ATTGAAG--ACAACTGTGAATCTTACTTCCCTTG-CAGTGC-AGTAGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTA-AAAAG
* * * * *
43746396 ATTGAAGCTACAACGCTGAATCTTATTTGCCTGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * ** *
43746446 ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* **** * * *
43746496 ATTAAAGCTACAACAACAAATCTTGC-TCCACGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * * *
43746545 ATTGAAGCCACAACGGTGAATCTTAATT-CCCTAGCGGTGCAGTTGAGAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCAATTAAAAAG
* * **
43746595 GTTGAAGCTACAATGGTGAATCTGGC-TCTCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTC-CCCGACATTGCAATTAAAAAG
* * * * * ** * * * ***
43746645 ATTAAAGCCACAACGGTGTATCTTACTTCCCTGGCGGTACAGTGGAGGGAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
**
43746696 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * ** * * *
43746746 ATTAAAGCCACAAAGGTAAATCTTACTTCCCTCG-CGGTGCAGTGGGAACAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAAT--TAAAAAG
** * * * * *
43746797 ATTGAAGCTACAACGACGAATCTTGC-TCCACAATATTACAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * **** * * ** **
43746846 ATTGAAAGCCACAACGGTGAATCTTACTTCCCTGTTGGTACAGTGGAGCAG
1 ATTG-AAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * *
43746897 ATTGAAGCTATAACGGTAAATATTGCCTCCCCGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * *** *
43746947 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGGACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* *
43746997 ATTGAAGCTACAACGTTGAATCTTATTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * ** **
43747047 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC-GTGCAATGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** *
43747096 ATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** * * ** * ** *
43747146 ATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * *
43747196 ATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** *
43747246 ATTGAAGCCACAATGGCGAATCTGGC-TCCACGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * ** **
43747295 ATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * *
43747345 ATTAAAGCTACAACGGTGAATCTTGTCTT-CTCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTT-ACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * * *
43747395 ATTGAAACAACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
*** * *** *
43747445 ATTGAAGCTACAACAACGAATCTTGCTTCCTAAACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** * * * ** * ** *
43747495 ATTGAAGCTACAACGACGAATCTTACTTTCCTGGCAGCGCAGTGGAATAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* *
43747545 ATTCAAGCTACAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** * *** * * **
43747595 ATTGAAG-T-CGTAACGACGAATCTTACTT-CCCTAGCGGCGCAGTGGAGCAA-
1 ATTGAAGCTAC--AACGGTGAATCTTACTTCCCCGA-CATTGCAAT-TAAAAAG
** ** ** * * *
43747645 ATTGAAGCGGCAACGGCAAATCTGGCTCCCCCGACATTGAAATGAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * ** *
43747695 ATTGAAGCCAGAAC-ATCGAATCTTACTTCCCTGGCGGTGTAATGGAACAG
1 ATTGAAGCTACAACGGT-GAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * ** *
43747745 ATTGAAGTTACAACGGTGAATTTTGTTTCGCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * * ** **
43747795 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** * *
43747845 ATTGAAACTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** * * * *
43747895 ATAGAAGCCACAACAGCGAATCTTTCTTCCCTGGA-GGTGTAGTGGAACAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAAT-TAAAAAG
* ** ** *
43747945 ATTGAAGCTACAACGCTGAATCTTGTTTCCCTTACATTGCAATTAAAATG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** ** *
43747995 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCAGTGCAATGGAGCAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** *
43748045 ATTAAAGCTAGAACGATGAATCTGGCTGCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * * ** *
43748095 ATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** * * *
43748145 ATTGAAGCTACAACGGTGAATCTTGTTTCTCTGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * ** * ** *
43748195 ATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * *
43748245 ATTGAAGCTATAACGGTAAATCTTGC-TCCACGACATTGTAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * * * ** **
43748294 ATTGAAGCCATAACGGTGAATCTTACTTTCCTGGCGA-TGTACTGGAGCAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAATTAAAAAG
* ** *
43748344 ATTGAAGCTACAACGGCGAATCTGGCTTCCCAGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** * * * * ** *
43748394 ATTGAAG-TCACAACGGTGAATCTTACTTCCTTGGCAGTGTAGTGGAATAG
1 ATTGAAGCT-ACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
** *
43748444 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCGAAATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * ** *
43748494 ATTGAAGCCATAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * ** *
43748544 ATTGAAGCCACAACGATGAATCTTACTTCCCTGACGGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** *
43748594 ATTGAAGCTACAATGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * * * * * ** *
43748644 ATTAAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* ** *
43748694 ATTGAAGCTACAACGGTGAATCTTGC-TCCATGACATTGCAATTAAAAAT
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * * ** **
43748743 ATTGAAGCCACAACGGGGAATCTTACTTCACTGGCGGTGTAGTGGAGTAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
**
43748793 ATTGAAGCTACAACGGTGAATCTGGCTTCCCCGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * ** * * * *
43748843 ATTGAAACCACAATGGTGAATCTTACTTCCTTGGCAGTGC-AGTAGAACAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTA-AAAAG
* *
43748893 ATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
* * * * * ** * * *
43748943 TTTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAAT-TAAAAAG
* * * * * * **
43748993 ATTGAAGCTATAACGATGAATCTTGCTTGCCTGACATTGCAGTTAATTAG
1 ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
43749043 ATTGAAG
1 ATTGAAG
43749050 ATAGCAAATC
Statistics
Matches: 3998, Mismatches: 1621, Indels: 247
0.68 0.28 0.04
Matches are distributed among these distances:
47 4 0.00
48 57 0.01
49 591 0.15
50 3151 0.79
51 186 0.05
52 9 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
ATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAG
Found at i:43744178 original size:100 final size:99
Alignment explanation
Indices: 43744003--43749049 Score: 3450
Period size: 100 Copynumber: 50.6 Consensus size: 99
43743993 GCTATTAAAA
* * * * *
43744003 AGATTGAAGCTACAACAGTGAACCTTG-CTCCACGACATTGCAATTAAAAAGATTAAAACCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * **
43744067 TGGTGAGTCTTACTTCCCTGGTAGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
43744102 AGATTGAAGCTACAACAGTGAATCTTGTTTCCCTGACATTGTAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
43744167 TGGCGAATCTTACTTCTCTGGCGGTGCAATGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* ** * * * *
43744202 AGATTGAAGCTATAACGGCAAATCTTG-CTCCACGACATTGTAATTAAAAATATTGAAGCCATAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* *** *
43744266 CGGTGAATCTTACTTCCCTGGCGGTGTTCTGGAGC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
*
43744301 AGATTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
43744366 TGTCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * ** ** * * *
43744401 AAATTTAAGCTACAACGGCGAATCTTACTTCCTAAACATTGTAATTAAAAAGATTGAAGCTACAG
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * **
43744466 TGGCAAATCTTACTTCCCCGGTAGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * *
43744501 AGATTCAAGCTACAACGGTGTATCTTATTTTCCCGACATTTCAGTTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTT-GTTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * **
43744566 CGACGAATCTTACTTCTCTAGCGGTGCAGTGGAGT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* ** * * * ** * * *
43744601 AAATCAAAGCTACATCGGCGAATCTGGCTCCCCCGACATTACAATTAACAAGATTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * **
43744666 CGGTGAATCTTACTTCCCTGG-GTGTGCAATAGAGT
65 CGGCGAATCTTACTTCCCTGGCG-GTGCAGTGGAAC
* * ** * *
43744701 AGATTGAAGCTACAACGGTTAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
43744766 CGGGGAATCTTACTTCCCTAGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
43744801 AGATTGAAGCTACAACGGTGAATCTGGCTCTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
43744866 CGACAAATCTTACTTCCCTGGCGGTACAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
43744901 AGATTGAAGCTACAACGGTGAACCTTGTTTCCCCGACATTGCAATTAAAAAGATTCAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * *
43744966 TGATGAATCTTACTTCCCTGGCCGTGCAGTGGAAT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
43745001 AAATTGAAGCTACAACGGTGAATCTTG-CTCCACGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * *
43745065 CAGCGAATCTTACTTTCCTGGCGGTACAGTGGAGC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *** * * *
43745100 AGAGTGAAGCTACAACGACAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAACCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * *
43745165 CGGCAAATCTTAGTTCCCTAGCGGTGTAGAGGAGC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * *
43745200 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCTGACATTGCAATTAAAAAGATTGAAGCCATAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* *
43745265 CGGCGAATCTTACTTCCCTGGTGGTGGAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * *
43745300 ATATTAAAGCTACAACGGTGAATCTTATTCCCCTGACATTGCTATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
43745365 GGGTGAATCTTACTTCTCTGGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * * *
43745400 ATATTGAAGCTACAACAGCGAACCTTG-CTCCACGACATTCCAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * **
43745464 TGGTAAATCTTACTTCCCTAGCGGTGCAGTGGAGT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
43745499 AGATTGAAGCTACAACGGTGAATCTTGTTTCTCCCACATTGTAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * *
43745564 TGGTGAATCTTACTTTCCTGGCGGAGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * ** *** * * * * * *
43745599 AAATTGAAGCTACAACGGTAAATCTTACTTCTTAAACATTGTAATTAAAAATACTGAGGCTAGAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
43745664 CGGTGAATCTTACTTCCCTGACGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * * *
43745699 AGATTCAAGCTAGAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAAATATTAAAG-AACAG
1 AGATTGAAGCTACAACGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
43745763 TGTCGAATCTTACTTCCCTAGCGATGCAGTGGAGC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * * * *
43745798 AGATCGAAGCTACAACGGTGAATCTGGCTCCCTCGATATTGAAATTAAAAAGATTGAAGCCAGAG
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
43745863 CAGCGAATCTTACTTCCCTGGAGGTGAAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
43745898 AGATTGAAGCTATAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
43745963 TGGCGAATCTTACTTCACTGGCTGTACAATGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * ** *
43745998 AAATTGAAGGTACAACGGGGAATCTT-ACTCCACGACATTGCAATTAAAAAGATTGAAGCCGCAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
43746062 TGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
** * * * * *
43746097 AGATTGAAGCTACAAAAGCGAATCTTGCTGCACGACATTGCAATTTAAAAGATTGAAGCCACAAC
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
* * *
43746162 GGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGC
66 GGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * *
43746196 ATATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAA-ATTTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGA-TTGAAGCCACA
* * * *
43746260 ACGGTGAATCTTACTTCCCTGACGGTACAGTAGAAC
64 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * ** *
43746296 AGA-TGCAAGCTACAACGATGAATCTGGCTGCCCCAACATTGCAATTAAAAAGATTGAAG--ACA
1 AGATTG-AAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * *
43746358 ACTGTGAATCTTACTTCCCTTGCAGTGCAGTAGAGC
64 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * *
43746394 AGATTGAAGCTACAACGCTGAATCTTATTTGCCTGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
*
43746459 TGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* **** * *
43746494 AGATTAAAGCTACAACAACAAATCTTG-CTCCACGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * *
43746558 CGGTGAATCTTAATTCCCTAGCGGTGCAGTTGAGA-
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-AC
* * * * *
43746593 AGGTTGAAGCTACAATGGTGAATCTGGCTCTCCCGACATTGCAATTAAAAAGATTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * **
43746658 CGGTGTATCTTACTTCCCTGGCGGTACAGTGGAGGG
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-AC
*
43746694 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** *
43746759 AGGTAAATCTTACTTCCCTCGCGGTGCAGTGGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGT-GGAAC
* ** * * * *
43746795 AAATTGAAGCTACAACGACGAATCTTG-CTCCACAATATTACAATTAAAAAGATTGAAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTG-AAGCCACA
* ** * *
43746859 ACGGTGAATCTTACTTCCCTGTTGGTACAGTGGAGC
64 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * *
43746895 AGATTGAAGCTATAACGGTAAATATTGCCTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
43746960 CAGCGAATCTTACTTCCCTGGCGGTGCAGTGGGAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
43746995 AGATTGAAGCTACAACGTTGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
43747060 CGGTGAATCTTACTTCCCTGGC-GTGCAATGGAGC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* **
43747094 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
*
43747159 CGACGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
43747194 AGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * ** * ** *
43747259 TGGCGAATCTGGC-TCCAC-GACATTGCAATTAAAA
65 CGGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAAC
* * * ** * ** * ** ** * *
43747293 AGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * ** * ** *
43747358 CGGTGAATCTTGTCTTCTC-GACATTGCAATTAAAA
65 CGGCGAATCTT-ACTTCCCTGGCGGTGCAGTGGAAC
* * * ** * ** * * * *
43747393 AGATTGAAACAACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAAT-TAAAAAGATTGAAGCCACA
** * ** ** * * ** *
43747457 ACAACGAATCTTGCTT-CCTAAACATTGTAATTAAAA
64 ACGGCGAATCTTACTTCCCT-GGCGGTGCAGTGGAAC
** * * * ** * ** * * *
43747493 AGATTGAAGCTACAACGACGAATCTTACTTTCCTGGCAGCGCAGTGGAATAGATTCAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTT-GTTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * ** * ** *
43747558 CGGTGAATCTTATTTCCCCGACATTGCAATTAAAA
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
** ** * *** * * ** **
43747593 AGATTGAAG-T-CGTAACGACGAATCTTACTTCCCTAGCGGCGCAGTGGAGCAA-ATTGAAGCGG
1 AGATTGAAGCTAC--AACGGTGAATCTTGTTTCCCGA-CATTGCAAT-TAAAAAGATTGAAGCCA
* ** * * * ** * * * *
43747655 CAACGGCAAATCTGGCTCCCCCGACATTGAAATGAAAA
62 CAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * ** * ** * ** * **
43747693 AGATTGAAGCCAGAAC-ATCGAATCTTACTTCCCTGGCGGTGTAATGGAACAGATTGAAGTTACA
1 AGATTGAAGCTACAACGGT-GAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACA
* * ** * ** * ** *
43747757 ACGGTGAATTTTGTTTCGCC-GACATTGCAATTAAAA
64 ACGGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAAC
* ** * ** * * ** ** * *
43747793 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAACTACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * ** * * ** *
43747858 CGGCAAATCTTGCTTCCCCGACATTGTAATTAAAA
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * ** * * * * *
43747893 AGATAGAAGCCACAACAGCGAATCTT-TCTTCCCTGGA-GGTGTAGTGGAACAA-ATTGAAGCTA
1 AGATTGAAGCTACAACGGTGAATCTTGT-TTCCC--GACATTGCAAT-TAAAAAGATTGAAGCCA
** ** ** * * *
43747955 CAAC-GCTGAATCTTGTTTCCCTTACATTGCAAT-TAAA
62 CAACGGC-GAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * ** * * ** ** * * * *
43747992 ATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCAGTGCAATGGAGCATATTAAAGCTAGA
1 A-GATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACA
** ** * * * ** * ** *
43748057 ACGATGAATCTGGCTGCCCCGACATTGCAATTAAAA
64 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * ** ** * * ** * *
43748093 AGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * ** * * ** *
43748158 CGGTGAATCTTGTTTCTCTGACATTGTAATTAAAA
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * ** * * ** * ** * * *
43748193 AGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTATAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * ** * * ** *
43748258 CGGTAAATCTTGC-TCCAC-GACATTGTAATTAAAA
65 CGGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAAC
* * * * * * * ** ** *
43748292 AGATTGAAGCCATAACGGTGAATCTTACTTTCCTGGCGA-TGTACTGGAGCAGATTGAAGCTACA
1 AGATTGAAGCTACAACGGTGAATCTT-GTTTCCCGAC-ATTGCAATTAAAAAGATTGAAGCCACA
** * * ** * ** *
43748356 ACGGCGAATCTGGCTTCCCAGACATTGCAATTAAAA
64 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
** * * * * * ** * *
43748392 AGATTGAAG-TCACAACGGTGAATCTTACTTCCTTGGCAGTGTAGTGGAATAGATTGAAGCTACA
1 AGATTGAAGCT-ACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACA
* ** * **** * ** *
43748456 ACGGTGAATCTTGTTTCCCCGAAATTGCAATTAAAA
64 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * **
43748492 AGATTGAAGCCATAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** *
43748557 CGATGAATCTTACTTCCCTGACGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* *
43748592 AGATTGAAGCTACAATGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * *
43748657 TGGTGAAAATTACTTCTCTGGCAGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
43748692 AGATTGAAGCTACAACGGTGAATCTTG-CTCCATGACATTGCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * **
43748756 CGGGGAATCTTACTTCACTGGCGGTGTAGTGGAGT
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
43748791 AGATTGAAGCTACAACGGTGAATCTGGCTTCCCCGACATTGCAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
43748856 TGGTGAATCTTACTTCCTTGGCAGTGCAGTAGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * *
43748891 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATTAAAAAGTTTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
*
43748956 CGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
65 CGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * * **
43748991 AAATTGAAGCTATAACGATGAATCTTGCTTGCCTGACATTGCAGTTAATTAGATTGAAG
1 AGATTGAAGCTACAACGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTGAAG
43749050 ATAGCAAATC
Statistics
Matches: 4078, Mismatches: 774, Indels: 191
0.81 0.15 0.04
Matches are distributed among these distances:
97 1 0.00
98 89 0.02
99 974 0.24
100 2797 0.69
101 212 0.05
102 5 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (99 bp):
AGATTGAAGCTACAACGGTGAATCTTGTTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
GGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
Found at i:43749208 original size:45 final size:44
Alignment explanation
Indices: 43749149--43749263 Score: 142
Period size: 45 Copynumber: 2.6 Consensus size: 44
43749139 ATCGTATCAG
* * *
43749149 GTCTTATC-CTCCTGAAGTTGCAGTGGGGTAGACTGAAGATAGCGA
1 GTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTGAAGATA-CAA
* *
43749194 GTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAGCTACAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACAA
* *
43749238 ATCCTATCTCCCTGAAGTTGCAGTGG
1 GTCTTATCTCCCTGAAGTTGCAGTGG
43749264 TGCGGATTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 25 0.41
45 35 0.57
46 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (44 bp):
GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACAA
Found at i:43750845 original size:3 final size:3
Alignment explanation
Indices: 43750839--43751059 Score: 107
Period size: 3 Copynumber: 75.3 Consensus size: 3
43750829 TTAAACAAAT
* *
43750839 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *** * *
43750887 -TC TTA GTT- TTA TTG TTA CT- TTA TTG CCG TTAA CT- TTA CTA -TA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
** * * * * * *
43750929 AAA ATA TTA TTA ATG TTA TTA CTA TT- TTT TTA TTA TTA ATA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * * * *
43750975 TCTA TTA TTG TTA TAA TTA CCA TTA AT- TTC GTA TCA TTC TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
43751020 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
43751060 ATTTCTATTT
Statistics
Matches: 161, Mismatches: 46, Indels: 22
0.70 0.20 0.10
Matches are distributed among these distances:
2 10 0.06
3 147 0.91
4 4 0.02
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:43757698 original size:12 final size:11
Alignment explanation
Indices: 43757681--43757740 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 11
43757671 AGGCAGCCCA
43757681 ATTATTATTATT
1 ATTATTATT-TT
43757693 ATTATTATTTT
1 ATTATTATTTT
* *
43757704 -CT-TTACTTT
1 ATTATTATTTT
*
43757713 ATTTATTACTTT
1 A-TTATTATTTT
43757725 ATT-TTATTTT
1 ATTATTATTTT
43757735 ATTATT
1 ATTATT
43757741 TATTACTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 6 0.15
10 10 0.25
11 7 0.17
12 17 0.43
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:43757739 original size:21 final size:20
Alignment explanation
Indices: 43757685--43757740 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 20
43757675 AGCCCAATTA
43757685 TTATTATTATTATTATTTTCT
1 TTATT-TTATTATTATTTTCT
*
43757706 TTACTTTATTTATTACTTTAT-T
1 TTATTTTA-TTATTA-TTT-TCT
43757728 TTATTTTATTATT
1 TTATTTTATTATT
43757741 TATTACTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 3 0.10
21 15 0.50
22 11 0.37
23 1 0.03
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATTTTATTATTATTTTCT
Found at i:43757743 original size:17 final size:17
Alignment explanation
Indices: 43757682--43757744 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 17
43757672 GGCAGCCCAA
43757682 TTATTA-TTATTATTATT
1 TTATTATTTATT-TTATT
* *
43757699 ATT-TTCTTTACTTTA-T
1 -TTATTATTTATTTTATT
43757715 TTATTACTTTATTTTATT
1 TTATTA-TTTATTTTATT
43757733 TTATTATTTATT
1 TTATTATTTATT
43757745 ACTTATTTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
15 2 0.05
16 3 0.08
17 19 0.51
18 13 0.35
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTATTTATTTTATT
Found at i:43778657 original size:26 final size:26
Alignment explanation
Indices: 43778597--43778665 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 26
43778587 GGGAATTGAT
* *
43778597 TTGCTCACATAAGCTGACATATTTGGG
1 TTGCTCACACAAGCT-TCATATTTGGG
43778624 TTGCTCACACAAGCTTCA-ATTTAGGG
1 TTGCTCACACAAGCTTCATATTT-GGG
43778650 TTGCTCACACAAGCTT
1 TTGCTCACACAAGCTT
43778666 TAGAGATTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
25 4 0.10
26 21 0.54
27 14 0.36
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
TTGCTCACACAAGCTTCATATTTGGG
Found at i:43778820 original size:31 final size:31
Alignment explanation
Indices: 43778785--43778848 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
43778775 TTTACTAAGT
43778785 TTACATGGGCACTATTACAATATCTAAATCA
1 TTACATGGGCACTATTACAATATCTAAATCA
43778816 TTACATGGGCACTATTACAATATCTAAATCA
1 TTACATGGGCACTATTACAATATCTAAATCA
43778847 TT
1 TT
43778849 TCAAAACTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (31 bp):
TTACATGGGCACTATTACAATATCTAAATCA
Found at i:43780000 original size:15 final size:14
Alignment explanation
Indices: 43779971--43780015 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
43779961 TGGCCTCTCA
*
43779971 TTTTCTTTTTCCTT
1 TTTTCATTTTCCTT
*
43779985 TTTTCCTTTTCTCTT
1 TTTTCATTTTC-CTT
*
43780000 TTTTCATTTTCATT
1 TTTTCATTTTCCTT
43780014 TT
1 TT
43780016 GAATTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTCATTTTCCTT
Found at i:43780057 original size:23 final size:23
Alignment explanation
Indices: 43780031--43780075 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
43780021 TGATTTTGAA
* *
43780031 TTTTCTTTTTCTTTTTTTTTTGT
1 TTTTCATTTTCATTTTTTTTTGT
* *
43780054 TTTTGATTTTGATTTTTTTTTG
1 TTTTCATTTTCATTTTTTTTTG
43780076 GATTGGATCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.04, C:0.04, G:0.09, T:0.82
Consensus pattern (23 bp):
TTTTCATTTTCATTTTTTTTTGT
Found at i:43786610 original size:2 final size:2
Alignment explanation
Indices: 43786598--43786628 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
43786588 GTATAATTTG
*
43786598 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43786629 AGGCCTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:43794068 original size:20 final size:18
Alignment explanation
Indices: 43794021--43794069 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
43794011 CAAGATAAAC
43794021 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
43794038 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
43794058 ATTAAATTAATA
1 ATTAAATTAATA
43794070 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:43796582 original size:61 final size:61
Alignment explanation
Indices: 43796509--43796625 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
43796499 CACAAATTGT
* * * *
43796509 TTGTTTATTTTGTGACATTAAGAAAGCGTCATGAAAAA-TAGATTAGAAACATCATGAAATG
1 TTGTGTATTTTGTGACATTAAGAAAACATCAT-AAAAATTAGATTAAAAACATCATGAAATG
* *
43796570 TTGTGTATTTTGTGACATTTAGAAAACATCATAAAAATTTAGTTTAAAAACATCAT
1 TTGTGTATTTTGTGACATTAAGAAAACATCATAAAAA-TTAGATTAAAAACATCAT
43796626 AAAAAATACT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 5 0.10
61 28 0.58
62 15 0.31
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.36
Consensus pattern (61 bp):
TTGTGTATTTTGTGACATTAAGAAAACATCATAAAAATTAGATTAAAAACATCATGAAATG
Found at i:43802232 original size:20 final size:20
Alignment explanation
Indices: 43802207--43802246 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
43802197 CGTAAAATGA
*
43802207 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
43802227 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
43802247 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:43802236 original size:34 final size:35
Alignment explanation
Indices: 43802192--43802258 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
43802182 CAATAAAATA
*
43802192 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
43802226 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
43802259 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:43802262 original size:14 final size:15
Alignment explanation
Indices: 43802186--43802262 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
43802176 GATTACCAAT
* *
43802186 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
43802200 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
43802214 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
43802234 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
43802249 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
43802263 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:43803867 original size:96 final size:96
Alignment explanation
Indices: 43803756--43803943 Score: 250
Period size: 96 Copynumber: 2.0 Consensus size: 96
43803746 CTTAGTTTCT
* * *
43803756 TCTCTAGTTGGATATTTAATTGGACATTAGAAATCATTATGATCTTTTGAACTACACCAATAAAA
1 TCTCTAGTTGAATATTTAATTGAACATTAGAAACCATTATGATCTTTTGAACTACACCAATAAAA
* *
43803821 TTGTACAAAAGGTGATATCTCAATCGTCTTC
66 TTGCACAAAAGGTGATAGCTCAATCGTCTTC
* * * * * * * * *
43803852 TCTCTATTTGAATATTTAATTGAACATTGGCAACCCTTGTGATCTTTTGAATTGCACCAGTAACA
1 TCTCTAGTTGAATATTTAATTGAACATTAGAAACCATTATGATCTTTTGAACTACACCAATAAAA
43803917 TTGCACAAAAGGTGATAGCTCAATCGT
66 TTGCACAAAAGGTGATAGCTCAATCGT
43803944 ATTCCTCCTT
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (96 bp):
TCTCTAGTTGAATATTTAATTGAACATTAGAAACCATTATGATCTTTTGAACTACACCAATAAAA
TTGCACAAAAGGTGATAGCTCAATCGTCTTC
Found at i:43823920 original size:25 final size:25
Alignment explanation
Indices: 43823872--43823922 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
43823862 TTTAAAAATA
*
43823872 TTTAAAATTATTAAAATATTATATT
1 TTTAAAATTATTAAAATATCATATT
*
43823897 TTTAATATTATTAAACATA-CATATT
1 TTTAAAATTATTAAA-ATATCATATT
43823922 T
1 T
43823923 AATTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTAAAATTATTAAAATATCATATT
Found at i:43824050 original size:16 final size:17
Alignment explanation
Indices: 43824014--43824050 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
43824004 AATTTTATTT
*
43824014 TAATACTAAGTTTTAAA
1 TAATAATAAGTTTTAAA
43824031 -AATAATAA-TTTTAAA
1 TAATAATAAGTTTTAAA
43824046 TAATA
1 TAATA
43824051 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
TAATAATAAGTTTTAAA
Found at i:43828764 original size:22 final size:22
Alignment explanation
Indices: 43828707--43828748 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
43828697 AAGAAATAAC
**
43828707 AAATAAAGGAATAAATGAATTA
1 AAATAAAAAAATAAATGAATTA
43828729 AAATAAAAAAATAAATGAAT
1 AAATAAAAAAATAAATGAAT
43828749 AATATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (22 bp):
AAATAAAAAAATAAATGAATTA
Found at i:43828771 original size:38 final size:37
Alignment explanation
Indices: 43828729--43828810 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 37
43828719 AAATGAATTA
* * *
43828729 AAATAAAAAAATAAATGAATAATATATAATAAATAAGT
1 AAATAAAAAAATAAATGAATAAAATAAAAGAAATAA-T
** * *
43828767 AAATAAGCAATTAAATGAATAAAATAAAAGGAATAAT
1 AAATAAAAAAATAAATGAATAAAATAAAAGAAATAAT
43828804 AAATAAA
1 AAATAAA
43828811 TATGTAAATA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
37 7 0.19
38 29 0.81
ACGTcount: A:0.68, C:0.01, G:0.07, T:0.23
Consensus pattern (37 bp):
AAATAAAAAAATAAATGAATAAAATAAAAGAAATAAT
Found at i:43830164 original size:15 final size:15
Alignment explanation
Indices: 43830144--43830173 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
43830134 TTTTCTAGTT
43830144 TTTTTTTCTGTTTGG
1 TTTTTTTCTGTTTGG
*
43830159 TTTTTTTTTGTTTGG
1 TTTTTTTCTGTTTGG
43830174 GCCCAGACGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.03, G:0.20, T:0.77
Consensus pattern (15 bp):
TTTTTTTCTGTTTGG
Found at i:43830164 original size:16 final size:15
Alignment explanation
Indices: 43830143--43830173 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
43830133 ATTTTCTAGT
43830143 TTTTTTTTCTGTTTGG
1 TTTTTTTT-TGTTTGG
43830159 TTTTTTTTTGTTTGG
1 TTTTTTTTTGTTTGG
43830174 GCCCAGACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.00, C:0.03, G:0.19, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTGTTTGG
Found at i:43830413 original size:44 final size:44
Alignment explanation
Indices: 43830329--43831088 Score: 452
Period size: 44 Copynumber: 16.7 Consensus size: 44
43830319 TCATTCTACC
* * * * *
43830329 CCACTGCAACTTCCGAGG-TATAGGATTTGTTGCTTCAATCTACT
1 CCACTGCAACTTCAG-GGAGATAAGATTTGTAGCTTCAATCTGCT
* * * *
43830373 CCAGTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * * * *
43830417 TCACTGCAAGTTTAGGGAGATGAGACTCGTATCTGCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
43830461 CCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * * *
43830505 CTACTGCAGCTTTAGAGAGATAATATTTTATATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGA-TTTGTAGCTTCAATCTGCT
* * * *
43830550 CCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * *
43830594 CTATTGCAGCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * *
43830639 CCACTGCAACTTCAGGGAGAAAAGATTAGTGGCTTTAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * *
43830683 CCATTGTAACTTTAGTGAGATAAAATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * *
43830727 CTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * * * **
43830772 CTAATACAACTTCAAGGAGATAAGATTTGTAGCTTGTATTTTTAGTTTATT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTT-CA-----A-TCTGCT
* *
43830823 CCACTGCAACTTCAGGGAGATAAGACTTGCTATGGTAGATTTAAT-TCGAC-
1 CCACTGCAACTTCAGGGAGATAAGA--T--T-T-GTAGCTTCAATCT-G-CT
* * ***
43830873 CCACTGCAACTTCAGAGG-TATAAGACTTGTCA-CTTCAATAAACT
1 CCACTGCAACTTCAG-GGAGATAAGATTTGT-AGCTTCAATCTGCT
* * * * ** *
43830917 CCACTGCTACTTCAAGGAGATAAGACTTGTAACTTTGATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * **
43830961 CTACTACAAC-TCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTATT
1 CCACTGCAACTTC-AGGGAGATAAGA----T---TTGTAGCTTCAATCTGCT
* * * ** *
43831012 TCACTGCAACTTCAGGGAAATAAGATTGGCTATATTCAATCTTACT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATC-TGCT
*
43831058 CCACTGCAACTTTAGGGAGATAAGATTTGTA
1 CCACTGCAACTTCAGGGAGATAAGATTTGTA
43831089 ACTTGTAGCT
Statistics
Matches: 550, Mismatches: 130, Indels: 71
0.73 0.17 0.09
Matches are distributed among these distances:
43 8 0.01
44 294 0.53
45 124 0.23
46 29 0.05
47 1 0.00
49 1 0.00
50 23 0.04
51 57 0.10
52 2 0.00
53 1 0.00
55 1 0.00
56 3 0.01
57 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
Found at i:43830569 original size:89 final size:89
Alignment explanation
Indices: 43830361--43830774 Score: 442
Period size: 89 Copynumber: 4.7 Consensus size: 89
43830351 GGATTTGTTG
* * * *
43830361 CTTCAATCTACTCCAGTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCT-TCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCT-ACTGC-
* * * **
43830425 AG-TTTAGGGAGATGAGA-CTCGTAT
64 AGCTTTAGAGAGATAAGATTTTATAT
* * * *
43830449 CTGCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
*
43830514 CTTTAGAGAGATAATATTTTATAT
66 CTTTAGAGAGATAAGATTTTATAT
* * * *
43830538 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCTCTATTGCAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
* **
43830603 CTTCAGAGAGATAAGATTTGCTAT
66 CTTTAGAGAGATAAGATTTTATAT
* * * * * * * *
43830627 CTTCAATCTGCTCCACTGCAACTTCAGGGAGAAAAGATTAGTGGCTTTAATCTGTTCCATTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
* *
43830692 CTTTAGTGAGATAAAATTTGTA-A-
66 CTTTAGAGAGATAAGATTT-TATAT
* * * *
43830715 CTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCTA
43830775 ATACAACTTC
Statistics
Matches: 275, Mismatches: 46, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
87 2 0.01
88 102 0.37
89 171 0.62
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (89 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
CTTTAGAGAGATAAGATTTTATAT
Found at i:43830614 original size:133 final size:133
Alignment explanation
Indices: 43830313--43830806 Score: 453
Period size: 133 Copynumber: 3.7 Consensus size: 133
43830303 TCTTTTTCAA
* * * * * * * *
43830313 GTAACTTCATTCTACCCCACTGCAACTTCCGAG-GTATAGGATTTG-T-TGCTTCAATCTACTCC
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAG-ATAAGATTTGCTAT-CTTCAATCTGCTCT
* * ** * * * *
43830375 AGTGCAACTTCAGGGAGATTAGACTT-GTAGCTTTAATCTGCTTCACTGCAAGTTTAGGGAGATG
64 ACTGCAACTTCAGAGAGAAAAGA-TTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATA
* *
43830439 AGACTC
128 AGATTT
* * * * * *
43830445 GTATCTGCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG-TAACTTCAATCTGCTCTAC
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
* * ** *
43830509 TGCAGCTTTAGAGAGATAATATTTTA-TATCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
66 TGCAACTTCAGAGAGA-AA-AGATTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
43830573 GATTT
129 GATTT
** * * * * *
43830578 GTGGCTTTAATATGCTCTATTGCAGCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCAC
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
* * * * * * * *
43830643 TGCAACTTCAGGGAGAAAAGATTAGTGGCTTTAATCTGTTCCATTGTAACTTTAGTGAGATAAAA
66 TGCAACTTCAGAGAGAAAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
43830708 TTT
131 TTT
*
43830711 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAA
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
* * *
43830776 TACAACTTCA-AGGAGATAAGATTTGTAGCTT
66 TGCAACTTCAGA-GAGAAAAGATTAGTAGCTT
43830807 GTATTTTTAG
Statistics
Matches: 289, Mismatches: 65, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
132 65 0.22
133 193 0.67
134 31 0.11
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (133 bp):
GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
TGCAACTTCAGAGAGAAAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
TTT
Found at i:43831022 original size:51 final size:51
Alignment explanation
Indices: 43830967--43831099 Score: 136
Period size: 46 Copynumber: 2.7 Consensus size: 51
43830957 TGCTCTACTA
* * *
43830967 CAACTCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATC-TATTTCACTG
1 CAACT-TAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTTACTCCACTG
* * *
43831018 CAACTTCAGGGAAATAAGA-TTG--GC-TATA--TTCAATCTTACTCCACTG
1 CAACTT-AGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTTACTCCACTG
43831064 CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTT
1 CAAC-TTAGGGAGATAAGATTTGTAACTTGTAGCTT
43831100 TAGTCTGTTC
Statistics
Matches: 64, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
45 6 0.09
46 23 0.36
47 8 0.12
48 1 0.02
49 1 0.02
50 7 0.11
51 16 0.25
52 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
CAACTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTTACTCCACTG
Found at i:43831126 original size:51 final size:50
Alignment explanation
Indices: 43830963--43831135 Score: 144
Period size: 51 Copynumber: 3.5 Consensus size: 50
43830953 GATATGCTCT
* * *
43830963 ACTACAAC-TCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTATTTC
1 ACTACAACTTC-AGGGAAATAAGATTTGTAACTTGTAGCTTCAATCT-TTCC
* * *
43831014 ACTGCAACTTCAGGGAAATAAGA-TTG--GC-TATA--TTCAATCTTACTCC
1 ACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGCTTCAATCTT--TCC
* * * * *
43831060 ACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTGTTCC
1 ACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGCTTCAATCT-TTCC
*
43831111 ACTACAACTTCAGGGAAACAAGATT
1 ACTACAACTTCAGGGAAATAAGATT
43831136 CGCTATCTTC
Statistics
Matches: 96, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
44 1 0.01
45 7 0.07
46 23 0.24
47 6 0.06
48 1 0.01
49 1 0.01
50 6 0.06
51 42 0.44
52 8 0.08
53 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (50 bp):
ACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGCTTCAATCTTTCC
Found at i:43837208 original size:44 final size:44
Alignment explanation
Indices: 43837132--43837586 Score: 433
Period size: 44 Copynumber: 10.3 Consensus size: 44
43837122 CAACTCGTAG
* * * *
43837132 GATTTGTTGCTTCAATCTACTCCACTGCAACTTCAGGGAGATTA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * *
43837176 GACTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGGTGA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * ** * *
43837220 GACTCGTATTTTCAATCTACTCCATTACAACTTCAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* ** *
43837264 GATTTGTAACTTCAATCTGCTTTACTACAACTTCAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * *
43837308 TATTTGCTATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * * * *
43837353 GATTTGTGGCTTTAATATGCTCTACTGCAGCTTCAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * *
43837397 GATTTGCTATCTTCAATCTGTTCCACTACAACTTCAGGGAGAAAA
1 GATTTG-TAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * ** * *
43837442 GATTTGTGGCTTTAATCTGTTCCATTGTAGCTTTAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * * *
43837486 GATTTGTAACTTCAATCTGCTCTACTGCAGCTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * *
43837530 GATTTGCTATCTTCAATTTGCTCTACTACAACTTCAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
*
43837575 GATTTATAGCTT
1 GATTTGTAGCTT
43837587 ATAGTTTTAG
Statistics
Matches: 333, Mismatches: 75, Indels: 6
0.80 0.18 0.01
Matches are distributed among these distances:
44 224 0.67
45 109 0.33
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
Found at i:43837349 original size:89 final size:88
Alignment explanation
Indices: 43837132--43837579 Score: 475
Period size: 89 Copynumber: 5.1 Consensus size: 88
43837122 CAACTCGTAG
* * * *
43837132 GATTTGT-TGCTTCAATCTACTCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGC
1 GATTTGTAT-CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGC
* * *
43837196 TCCACTGCAACTTCAGGGAGGTGA
65 TCTACTGCAACTTCAGGGAGATAA
* * * * * * *
43837220 GACTCGTATTTTCAATCTACTCCATTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCT
1 GATTTGTATCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* * *
43837285 TTACTACAACTTCAGAGAGATAA
66 CTACTGCAACTTCAGGGAGATAA
* * * *
43837308 TATTTGCTATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGC
1 GATTTG-TATCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGC
* *
43837373 TCTACTGCAGCTTCAGAGAGATAA
65 TCTACTGCAACTTCAGGGAGATAA
* * * *
43837397 GATTTGCTATCTTCAATCTGTTCCACTACAACTTCAGGGAGAAAAGATTTGTGGCTTTAATCTGT
1 GATTTG-TATCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGC
* * * * *
43837462 TCCATTGTAGCTTTAGGGAGATAA
65 TCTACTGCAACTTCAGGGAGATAA
* * * * * * * * *
43837486 GATTTGTAACTTCAATCTGCTCTACTGCAGCTTTAGAGAGATAAGATTTGCTATCTTCAATTTGC
1 GATTTGTATCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGC
*
43837551 TCTACTACAACTTCAGGGAGATAA
65 TCTACTGCAACTTCAGGGAGATAA
43837575 GATTT
1 GATTT
43837580 ATAGCTTATA
Statistics
Matches: 298, Mismatches: 59, Indels: 5
0.82 0.16 0.01
Matches are distributed among these distances:
88 110 0.37
89 188 0.63
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (88 bp):
GATTTGTATCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
CTACTGCAACTTCAGGGAGATAA
Found at i:43837387 original size:133 final size:133
Alignment explanation
Indices: 43837141--43837586 Score: 473
Period size: 133 Copynumber: 3.4 Consensus size: 133
43837131 GGATTTGTTG
* ** * * * * *
43837141 CTTCAATCTACTCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCTCCACTGCAA
1 CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAA
* * * * * ** * * * * * * *
43837206 CTTCAGGGAGGTGAGACTCGTATTTTCAATCTACTCCATTACAACTTCAGGGAGATAAGATTTG-
66 CTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTGC
*
43837270 TAA
131 TAT
* * *
43837273 CTTCAATCTGCTTTACTACAACTTCAGAGAGATAATATTTGCTATCTTCAATCTGCTCCACTACA
1 CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCCACTACA
** *
43837338 ACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTG
65 ACTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTG
43837403 CTAT
130 CTAT
* * * * * * **
43837407 CTTCAATCTG-TTCCACTACAACTTCAGGGAGAAAAGATTTGTGGCTTTAATCTGTTCCATTGTA
1 CTTCAATCTGCTT-TACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACA
* * *
43837471 GCTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAGCTTTAGAGAGATAAGATTTG
65 ACTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTG
43837536 CTAT
130 CTAT
* * *
43837540 CTTCAATTTGCTCTACTACAACTTCAGGGAGATAAGATTTATAGCTT
1 CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTGTAGCTT
43837587 ATAGTTTTAG
Statistics
Matches: 259, Mismatches: 51, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
132 33 0.13
133 189 0.73
134 37 0.14
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (133 bp):
CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAA
CTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTGC
TAT
Found at i:43838871 original size:19 final size:20
Alignment explanation
Indices: 43838834--43838872 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
43838824 GTGATTTTTT
* *
43838834 GAAAAATTAATTTTGATCAA
1 GAAAAATTAATATTAATCAA
43838854 GAAAAATTAA-ATTAATCAA
1 GAAAAATTAATATTAATCAA
43838873 ATTAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (20 bp):
GAAAAATTAATATTAATCAA
Found at i:43842543 original size:6 final size:6
Alignment explanation
Indices: 43842532--43842579 Score: 96
Period size: 6 Copynumber: 8.0 Consensus size: 6
43842522 ATACTATGTA
43842532 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
43842580 AAATGTGAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:43845500 original size:16 final size:17
Alignment explanation
Indices: 43845479--43845511 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
43845469 ATTTATTATT
43845479 AAATTTA-AATTAAATA
1 AAATTTATAATTAAATA
*
43845495 AAATTTATTATTAAATA
1 AAATTTATAATTAAATA
43845512 TTAATTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATTTATAATTAAATA
Found at i:43849317 original size:76 final size:75
Alignment explanation
Indices: 43849165--43849381 Score: 240
Period size: 76 Copynumber: 2.9 Consensus size: 75
43849155 GGCTTAATTT
* * * **
43849165 ATTTTTTAAAACAGATTCGACTTTTGATAAAATGAAAAATAAAAGGACCTCGACAACAA-CATAA
1 ATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGGACCTCGACGATAATC-TCG
43849229 AGGCTCGACCC
65 AGGCTCGACCC
* * * *
43849240 ATTTTTGAAAATC-GATTCGACTTTTAATACAATGAAACATTGAAAGGACCTCGACGATAATCTC
1 ATTTTTTAAAA-CAGATTCGACTTTTGATACAATGAAA-AATAAAAGGACCTCGACGATAATCTC
*
43849304 GAGGCTTGACCC
64 GAGGCTCGACCC
* * * * * * *
43849316 ATTTTTTAAAACGGATTTGACTTTTGATACAAAGAAAACTAAAAAGACCCCAACGATAATCTCGA
1 ATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGGACCTCGACGATAATCTCGA
43849381 G
66 G
43849382 TGATAACATG
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
75 57 0.48
76 61 0.51
77 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (75 bp):
ATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGGACCTCGACGATAATCTCGA
GGCTCGACCC
Found at i:43849704 original size:2 final size:2
Alignment explanation
Indices: 43849692--43849725 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
43849682 AATTTAATAA
43849692 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43849726 AGGCTTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:43850576 original size:28 final size:28
Alignment explanation
Indices: 43850544--43850601 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
43850534 ATTATTTATG
43850544 TTGTTTTGATTATTTACTTTCTAAAACA
1 TTGTTTTGATTATTTACTTTCTAAAACA
43850572 TTGTTTTGATTATTTACTTTCTAAAACA
1 TTGTTTTGATTATTTACTTTCTAAAACA
43850600 TT
1 TT
43850602 CTCAAAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.55
Consensus pattern (28 bp):
TTGTTTTGATTATTTACTTTCTAAAACA
Found at i:43851025 original size:76 final size:75
Alignment explanation
Indices: 43850829--43851031 Score: 205
Period size: 76 Copynumber: 2.7 Consensus size: 75
43850819 GTGCCCATCA
* * * * *
43850829 CCGAGGCTCGACCCATTTTTAGAAAATCAAATTGGCTTTTGACAAAATG-ACAACTGAAAGACCT
1 CCGAGGCTCGACCCATTTTT-GAAAATGAATTTGACTTTTGATAAAATGAAAAACTGAAAGACCT
**
43850893 CGATGGCAATC
65 CGATAACAATC
* * * ** *
43850904 CTGAGGCTCGACCCATTTTTGAAAACGGATTCAACATTT-AGTAAAATGAAAAACTGAAAGGACC
1 CCGAGGCTCGACCCATTTTTGAAAATGAATTTGACTTTTGA-TAAAATGAAAAACTGAAA-GACC
*
43850968 TC-ACTAATAATC
64 TCGA-TAACAATC
* *
43850980 CCGAGGCTTGACCCATTTCTGAAAATGAATTTGACTTTTGATAAAATGAAAA
1 CCGAGGCTCGACCCATTTTTGAAAATGAATTTGACTTTTGATAAAATGAAAA
43851032 CTAAAAAGAC
Statistics
Matches: 101, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
73 1 0.01
74 17 0.17
75 29 0.29
76 53 0.52
77 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (75 bp):
CCGAGGCTCGACCCATTTTTGAAAATGAATTTGACTTTTGATAAAATGAAAAACTGAAAGACCTC
GATAACAATC
Found at i:43853933 original size:42 final size:43
Alignment explanation
Indices: 43853887--43854001 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
43853877 GAACGGTAAT
**
43853887 TTTAG-GGCGTTTGTGAAAAAAGCGTTGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGTTC
* * *
43853929 TTTAGCGGCATTTGTGAAAAAGGTGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGTTC
43853972 TTTAGCGGCGTTTATGTGAAAGAAA-CGCCG
1 TTTAGCGGCG-TT-TGTGAAA-AAAGCGCCG
43854002 TCAAAATTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 5 0.08
43 41 0.67
44 2 0.03
45 11 0.18
46 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:43854347 original size:15 final size:16
Alignment explanation
Indices: 43854327--43854362 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
43854317 TTAAAAGATG
*
43854327 TTTTTAAATAA-CTAT
1 TTTTTAAAAAAGCTAT
43854342 TTTTTAAAAAAGCTAT
1 TTTTTAAAAAAGCTAT
43854358 TTTTT
1 TTTTT
43854363 TTAAAAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (16 bp):
TTTTTAAAAAAGCTAT
Found at i:43854357 original size:16 final size:15
Alignment explanation
Indices: 43854327--43854378 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
43854317 TTAAAAGATG
*
43854327 TTTTTAAATAACTAT
1 TTTTTAAAAAACTAT
43854342 TTTTTAAAAAAGCTATT
1 TTTTTAAAAAA-CTA-T
*
43854359 TTTTTTAAAAACTACT
1 TTTTTAAAAAACTA-T
43854375 TTTT
1 TTTT
43854379 GTTTATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 10 0.31
16 11 0.34
17 11 0.34
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (15 bp):
TTTTTAAAAAACTAT
Done.