Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 168 of 187
Found at i:49734592 original size:6 final size:6
Alignment explanation
Indices: 49734574--49734625 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
49734564 CATTTTCATT
* ** ** *
49734574 TTTTGA CTTTGA TTTTGA TTTTCT TTTTTC TTTCGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
49734622 TTTT
1 TTTT
49734626 TCTTCCCTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.12, C:0.08, G:0.12, T:0.69
Consensus pattern (6 bp):
TTTTGA
Found at i:49734625 original size:24 final size:23
Alignment explanation
Indices: 49734565--49734629 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 23
49734555 CCCCTCTTTC
49734565 ATTTTCATTTTTTGACTTTGATTTTG
1 ATTTTCA-TTTTT--CTTTGATTTTG
*
49734591 ATTTTCTTTTTTCTTTCGATTTTG
1 ATTTTCATTTTTCTTT-GATTTTG
*
49734615 ATTTTGATTTTTCTT
1 ATTTTCATTTTTCTT
49734630 CCCTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 4 0.11
24 20 0.57
25 5 0.14
26 6 0.17
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.69
Consensus pattern (23 bp):
ATTTTCATTTTTCTTTGATTTTG
Found at i:49734637 original size:24 final size:24
Alignment explanation
Indices: 49734585--49734649 Score: 66
Period size: 24 Copynumber: 2.9 Consensus size: 24
49734575 TTTGACTTTG
* * *
49734585 ATTTTGATTTTCTTTTTTCTTTCG
1 ATTTTGATTTTCATTTTTCTTCCC
*
49734609 ATTTTGATTTTGATTTTTCTTCCC
1 ATTTTGATTTTCATTTTTCTTCCC
49734633 -TTTT--TTTTC-TTTTTCTT
1 ATTTTGATTTTCATTTTTCTT
49734650 TTTCTTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 8 0.22
21 4 0.11
23 4 0.11
24 20 0.56
ACGTcount: A:0.08, C:0.14, G:0.06, T:0.72
Consensus pattern (24 bp):
ATTTTGATTTTCATTTTTCTTCCC
Found at i:49737965 original size:31 final size:31
Alignment explanation
Indices: 49737930--49737991 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
49737920 AGGCAAATTA
49737930 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
49737961 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
49737992 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:49742995 original size:3 final size:3
Alignment explanation
Indices: 49742987--49743015 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
49742977 AAATTAGTTA
49742987 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
49743016 AATGATAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:49748852 original size:24 final size:23
Alignment explanation
Indices: 49748805--49748848 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
49748795 TTAATAAATT
49748805 TTAACATTTTTTATAAAATTTAA
1 TTAACATTTTTTATAAAATTTAA
* * *
49748828 TTAACTTTTTTTTTACAATTT
1 TTAACATTTTTTATAAAATTT
49748849 TAATGATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (23 bp):
TTAACATTTTTTATAAAATTTAA
Found at i:49748962 original size:30 final size:28
Alignment explanation
Indices: 49748919--49748995 Score: 73
Period size: 30 Copynumber: 2.6 Consensus size: 28
49748909 ATACAACAAC
**
49748919 TTTTTTACCATTTTAATATTTTAATATATA
1 TTTTTTATAATTTTAATATTTTAAT-TA-A
* * *
49748949 TTTTTTATAATTTTACTCTTTTTATTAA
1 TTTTTTATAATTTTAATATTTTAATTAA
*
49748977 TTTCTTAATAATTTTAATA
1 TTT-TTTATAATTTTAATA
49748996 ATTATTTCTC
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 4 0.11
29 14 0.37
30 20 0.53
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTTTTATAATTTTAATATTTTAATTAA
Found at i:49751230 original size:3 final size:3
Alignment explanation
Indices: 49751222--49751276 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
49751212 CAAACTCTAT
49751222 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
49751270 TTA TTA T
1 TTA TTA T
49751277 AGTAGACATA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:49752748 original size:17 final size:18
Alignment explanation
Indices: 49752728--49752762 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
49752718 TGTTTTATGT
49752728 TCATATT-AGTTTATTTC
1 TCATATTAAGTTTATTTC
*
49752745 TCATATTAATTTTATTTC
1 TCATATTAAGTTTATTTC
49752763 ATATTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.60
Consensus pattern (18 bp):
TCATATTAAGTTTATTTC
Found at i:49752766 original size:16 final size:16
Alignment explanation
Indices: 49752720--49752774 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 16
49752710 TTTAGACATG
49752720 TTTTATGTTCATATT-A
1 TTTTAT-TTCATATTAA
*
49752736 GTTTATTTCTCATATTAA
1 TTTTA-TT-TCATATTAA
49752754 TTTTATTTCATATTATA
1 TTTTATTTCATATTA-A
49752771 TTTT
1 TTTT
49752775 GCATTATGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
16 13 0.39
17 15 0.45
18 5 0.15
ACGTcount: A:0.25, C:0.07, G:0.04, T:0.64
Consensus pattern (16 bp):
TTTTATTTCATATTAA
Found at i:49758519 original size:50 final size:49
Alignment explanation
Indices: 49758402--49758642 Score: 257
Period size: 50 Copynumber: 4.9 Consensus size: 49
49758392 GAATATAACA
* * * ** * * * *
49758402 TGCCAAAGCTATGTCCCAGACATTGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
* * * ** *
49758451 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTA-G
* **
49758501 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AG
* * *
49758551 TGCCAACGCCATGTCCCGGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AG
*
49758601 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
49758643 TTACCCAAAT
Statistics
Matches: 160, Mismatches: 30, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
49 37 0.23
50 122 0.76
51 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
Found at i:49761525 original size:42 final size:42
Alignment explanation
Indices: 49761451--49761531 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
49761441 TGTAATTCAT
* * *
49761451 TGAGCTGCCCCACACGCCCGTGTGCTAGGCCGTTTAACTTTC
1 TGAGCTGCCACACACGCCCGTGTGCTAAGCCGTGTAACTTTC
*
49761493 TGAGTTGCCACACACGCCCGTGTG-TCAAGCCGTGTAACT
1 TGAGCTGCCACACACGCCCGTGTGCT-AAGCCGTGTAACT
49761532 CACTGACTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.03
42 33 0.97
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.25
Consensus pattern (42 bp):
TGAGCTGCCACACACGCCCGTGTGCTAAGCCGTGTAACTTTC
Found at i:49761548 original size:42 final size:42
Alignment explanation
Indices: 49761461--49761548 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
49761451 TGAGCTGCCC
* * ** * **
49761461 CACACGCCCGTGTGCTAGGCCGTTTAACTTTCTGAGTTGCCA
1 CACACGCCCGTGTGCTAAGCCGTGTAACTCACTGACTTGAAA
49761503 CACACGCCCGTGTG-TCAAGCCGTGTAACTCACTGACTTGAAA
1 CACACGCCCGTGTGCT-AAGCCGTGTAACTCACTGACTTGAAA
49761545 CACA
1 CACA
49761549 AAGAAACTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (42 bp):
CACACGCCCGTGTGCTAAGCCGTGTAACTCACTGACTTGAAA
Found at i:49762273 original size:40 final size:40
Alignment explanation
Indices: 49762201--49762401 Score: 267
Period size: 40 Copynumber: 5.0 Consensus size: 40
49762191 TATTTGATTT
* * * * *
49762201 AGGGTTACCAAAGAACAAACAAGGGCATGTATGTGCATTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
* * * *
49762241 AGGGGTATCAAAGTACAAATAGGGGAACGTATGTGCATTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
* ** *
49762281 AGGGGTACTGAAGTACAAACAGGGGCGTGTATGTGTATTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
**
49762321 AGGGGTACCGAAGTACAAACAGGGGGGCGTATGTGCATTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
49762361 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
49762401 A
1 A
49762402 ATAATATTCA
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.20
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATTC
Found at i:49762343 original size:20 final size:20
Alignment explanation
Indices: 49762320--49762385 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
49762310 TATGTGTATT
49762320 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
** * * **
49762340 CAGGGG-GGCGTATGTGCATT
1 CAGGGGTACCG-AAGTACAAA
49762360 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
49762380 CAGGGG
1 CAGGGG
49762386 CACGTATGTG
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.30, C:0.18, G:0.38, T:0.14
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:49773154 original size:20 final size:20
Alignment explanation
Indices: 49773129--49773186 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 20
49773119 CATAGATGCA
*
49773129 AAACAGATG-CACCGAAGTGT
1 AAACAGA-GACACCAAAGTGT
49773149 AAACAGAGACACCAAAGTGT
1 AAACAGAGACACCAAAGTGT
* *
49773169 -AACAGGGGCACCAAAGTG
1 AAACAGAGACACCAAAGTG
49773187 CAATCTCGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.43, C:0.21, G:0.26, T:0.10
Consensus pattern (20 bp):
AAACAGAGACACCAAAGTGT
Found at i:49773180 original size:19 final size:20
Alignment explanation
Indices: 49773129--49773186 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
49773119 CATAGATGCA
* *
49773129 AAACAGATGCACCGAAGTGT
1 AAACAGAGGCACCAAAGTGT
*
49773149 AAACAGAGACACCAAAGTGT
1 AAACAGAGGCACCAAAGTGT
*
49773169 -AACAGGGGCACCAAAGTG
1 AAACAGAGGCACCAAAGTG
49773187 CAATCTCGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.43, C:0.21, G:0.26, T:0.10
Consensus pattern (20 bp):
AAACAGAGGCACCAAAGTGT
Found at i:49773748 original size:18 final size:18
Alignment explanation
Indices: 49773725--49773761 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
49773715 TAAAAGGATT
49773725 TGTGTTACTTTAGTTGGG
1 TGTGTTACTTTAGTTGGG
49773743 TGTGTTACTTTAGTTGGG
1 TGTGTTACTTTAGTTGGG
49773761 T
1 T
49773762 CAGGTGGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.05, G:0.32, T:0.51
Consensus pattern (18 bp):
TGTGTTACTTTAGTTGGG
Found at i:49777051 original size:17 final size:17
Alignment explanation
Indices: 49777029--49777068 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
49777019 GATCTTCGAT
*
49777029 GAGCTTCCAAATTGATC
1 GAGCTTCCAAACTGATC
49777046 GAGCTTCCAAACTGATC
1 GAGCTTCCAAACTGATC
*
49777063 AAGCTT
1 GAGCTT
49777069 TCGATAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (17 bp):
GAGCTTCCAAACTGATC
Found at i:49781146 original size:2 final size:2
Alignment explanation
Indices: 49781139--49781173 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
49781129 AACATAACAC
49781139 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
49781174 AACTTTCCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:49782151 original size:41 final size:41
Alignment explanation
Indices: 49782101--49782235 Score: 144
Period size: 41 Copynumber: 3.3 Consensus size: 41
49782091 CCAACATAAG
* * *
49782101 GCCTTCTAGGCACAAAGCCAGATATGATACACTGGCACGAA
1 GCCTGCTAGGCATAAAGCCAGATATGATACACCGGCACGAA
* * *
49782142 GCCTGCTAGGCATAAAGCCTGATATGGTACACCGGCATGAA
1 GCCTGCTAGGCATAAAGCCAGATATGATACACCGGCACGAA
* * * ** * **
49782183 GCCTGCTAGGCATAAAGTCTGCTACAATTCACCGGCATAAA
1 GCCTGCTAGGCATAAAGCCAGATATGATACACCGGCACGAA
49782224 GCCTGCTAGGCA
1 GCCTGCTAGGCA
49782236 CAGAGCCTGA
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 81 1.00
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.19
Consensus pattern (41 bp):
GCCTGCTAGGCATAAAGCCAGATATGATACACCGGCACGAA
Found at i:49785404 original size:50 final size:50
Alignment explanation
Indices: 49785262--49785456 Score: 153
Period size: 50 Copynumber: 3.9 Consensus size: 50
49785252 GAGAATAACA
* * * ** * *
49785262 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATAC--
1 TGCCAACGCCATGTCCCAGACATGGTGTTACGTGGGACCTCTCATAT-CGG
* * * * * * * **
49785311 TGCAAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTGTTACGTGGGACCTCTCATATCGG
* * * * *
49785361 TGCCCATGCCATGTCCTAGACATGGTTTTACG-GGGAACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTGTTACGTGGG-ACCTCTCATATCGG
*
49785411 TGTCAACGCCATGTCCCAGACATGGTGTTACGTGGGACCTCTCATA
1 TGCCAACGCCATGTCCCAGACATGGTGTTACGTGGGACCTCTCATA
49785457 ATCTCAATAA
Statistics
Matches: 116, Mismatches: 26, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 40 0.34
50 72 0.62
51 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTGTTACGTGGGACCTCTCATATCGG
Found at i:49792748 original size:20 final size:21
Alignment explanation
Indices: 49792704--49792751 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
49792694 TCATATTCTT
*
49792704 TGCTT-CTTCTTTACTTATTC
1 TGCTTACTTCTTTACTTATCC
*
49792724 T-CTTACTTGTTTACTTA-CC
1 TGCTTACTTCTTTACTTATCC
49792743 TGCTTACTT
1 TGCTTACTT
49792752 AAATAACTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.12, C:0.25, G:0.06, T:0.56
Consensus pattern (21 bp):
TGCTTACTTCTTTACTTATCC
Found at i:49806212 original size:12 final size:13
Alignment explanation
Indices: 49806188--49806216 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
49806178 GAGCTATAAC
49806188 TATTGCATTTATT
1 TATTGCATTTATT
49806201 TATTGC-TTTATT
1 TATTGCATTTATT
49806213 TATT
1 TATT
49806217 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:49811515 original size:16 final size:16
Alignment explanation
Indices: 49811496--49811528 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
49811486 TTTGATTTCT
*
49811496 AAATGAAAACTTATTC
1 AAATGAAAACTGATTC
49811512 AAATGAAAACTGATTC
1 AAATGAAAACTGATTC
49811528 A
1 A
49811529 GATTTTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (16 bp):
AAATGAAAACTGATTC
Found at i:49824681 original size:41 final size:41
Alignment explanation
Indices: 49824595--49824686 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 41
49824585 CATGGGCACG
* * ** *
49824595 AAGCCTGCTAGGCTTAAAGCCTGATATGGTACACCCGCATT
1 AAGCCTGCTAGGCGTAAAGCCTGAAATAATACACCCGCATA
* ** *
49824636 AAGCCTGCTAGGCGTAAAGCTTGAAATAATTTACCGGCATA
1 AAGCCTGCTAGGCGTAAAGCCTGAAATAATACACCCGCATA
49824677 AAGCCTGCTA
1 AAGCCTGCTA
49824687 AGCTAAAAGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (41 bp):
AAGCCTGCTAGGCGTAAAGCCTGAAATAATACACCCGCATA
Found at i:49826705 original size:26 final size:24
Alignment explanation
Indices: 49826666--49826713 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 24
49826656 TCAAGCAAGC
49826666 AAAACAAAAAC-AAAGTAAAAACCA
1 AAAACAAAAACAAAAG-AAAAACCA
49826690 AAAACACAAACACAAAAGAAAAAC
1 AAAACA-AAA-ACAAAAGAAAAAC
49826714 AAAGTACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 8 0.38
27 4 0.19
ACGTcount: A:0.75, C:0.19, G:0.04, T:0.02
Consensus pattern (24 bp):
AAAACAAAAACAAAAGAAAAACCA
Found at i:49840640 original size:26 final size:25
Alignment explanation
Indices: 49840599--49840713 Score: 104
Period size: 26 Copynumber: 4.4 Consensus size: 25
49840589 GGGATGTACT
49840599 TTATTTAGCAAGCCTTGAGCCGGTGA
1 TTATTTAGCAA-CCTTGAGCCGGTGA
* *
49840625 TTATTTAGCAGACCTTGAGCCGATGT
1 TTATTTAGCA-ACCTTGAGCCGGTGA
* * * *
49840651 TTAGTTAGCAAGCTTTAGGCTGGTGA
1 TTATTTAGCAACCTTGA-GCCGGTGA
* * * *
49840677 TTTTTTAACAGGCTTTGAGCCGGTGA
1 TTATTTAGCA-ACCTTGAGCCGGTGA
49840703 TTATTTAGCAA
1 TTATTTAGCAA
49840714 GTACTATGTA
Statistics
Matches: 67, Mismatches: 19, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
25 5 0.07
26 58 0.87
27 4 0.06
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (25 bp):
TTATTTAGCAACCTTGAGCCGGTGA
Found at i:49840676 original size:52 final size:52
Alignment explanation
Indices: 49840598--49840714 Score: 137
Period size: 52 Copynumber: 2.2 Consensus size: 52
49840588 CGGGATGTAC
*
49840598 TTTATTTAGCAAGCCTTGAGCCGGTGATTATTTAGCAGACCTTGAGCCGATG
1 TTTATTTAGCAAGCCTTGAGCCGGTGATTATTTAACAGACCTTGAGCCGATG
* * * * * * *
49840650 TTTAGTTAGCAAG-CTTTAGGCTGGTGATTTTTTAACAGGCTTTGAGCCGGTG
1 TTTATTTAGCAAGCCTTGA-GCCGGTGATTATTTAACAGACCTTGAGCCGATG
*
49840702 ATTATTTAGCAAG
1 TTTATTTAGCAAG
49840715 TACTATGTAC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 4 0.07
52 50 0.93
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (52 bp):
TTTATTTAGCAAGCCTTGAGCCGGTGATTATTTAACAGACCTTGAGCCGATG
Found at i:49854759 original size:19 final size:18
Alignment explanation
Indices: 49854732--49854782 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
49854722 AGTATTTCAG
*
49854732 TCACAATGCTTTTAACCTC
1 TCACTATGCTTTTAA-CTC
*
49854751 TCACTATGCTCTTAACTC
1 TCACTATGCTTTTAACTC
* *
49854769 TCAATTTGCTTTTA
1 TCACTATGCTTTTA
49854783 TTCACTCATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 14 0.52
19 13 0.48
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.43
Consensus pattern (18 bp):
TCACTATGCTTTTAACTC
Found at i:49854771 original size:18 final size:19
Alignment explanation
Indices: 49854732--49854771 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
49854722 AGTATTTCAG
*
49854732 TCACAATGCTTTTAACCTC
1 TCACAATGCTCTTAACCTC
*
49854751 TCACTATGCTCTTAA-CTC
1 TCACAATGCTCTTAACCTC
49854769 TCA
1 TCA
49854772 ATTTGCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.25, C:0.33, G:0.05, T:0.38
Consensus pattern (19 bp):
TCACAATGCTCTTAACCTC
Found at i:49861598 original size:42 final size:42
Alignment explanation
Indices: 49861544--49861643 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 42
49861534 GCTCTTGGTA
*
49861544 TCGCACACTTAGTGCCCGTTATACAACATCATCATTTTAATT
1 TCGCACACTTAGTGCCCATTATACAACATCATCATTTTAATT
* * * *
49861586 TTGCACATTTAGTGCCCATTATCCAACATCATTATTTTAATT
1 TCGCACACTTAGTGCCCATTATACAACATCATCATTTTAATT
49861628 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
49861644 GTTCATATAG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.37
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCATTATACAACATCATCATTTTAATT
Found at i:49862549 original size:16 final size:17
Alignment explanation
Indices: 49862516--49862549 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
49862506 TATAAAGTTA
*
49862516 ATATTTACCTTATTACT
1 ATATTAACCTTATTACT
49862533 ATATTAACCTT-TTACT
1 ATATTAACCTTATTACT
49862549 A
1 A
49862550 ATAATTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTAACCTTATTACT
Found at i:49868257 original size:39 final size:39
Alignment explanation
Indices: 49868203--49868281 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
49868193 AAATTATACA
49868203 ATAAAAGTATTTTATACATACTAATGTCAAACCGCACAT
1 ATAAAAGTATTTTATACATACTAATGTCAAACCGCACAT
49868242 ATAAAAGTATTTTATACATACTAATGTCAAACCGCACAT
1 ATAAAAGTATTTTATACATACTAATGTCAAACCGCACAT
49868281 A
1 A
49868282 CTTCTCTTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (39 bp):
ATAAAAGTATTTTATACATACTAATGTCAAACCGCACAT
Found at i:49869654 original size:42 final size:42
Alignment explanation
Indices: 49869602--49869701 Score: 173
Period size: 42 Copynumber: 2.4 Consensus size: 42
49869592 GCTCTCGGTA
*
49869602 TCGCACACTTAGTGCCCGTTATACAACATCATCATTTTAATT
1 TCGCACACTTAGTGCCCATTATACAACATCATCATTTTAATT
* *
49869644 TCGCACACTTAGTGCCCATTATCCAACATCATTATTTTAATT
1 TCGCACACTTAGTGCCCATTATACAACATCATCATTTTAATT
49869686 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
49869702 GTTCATATAG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCATTATACAACATCATCATTTTAATT
Found at i:49870708 original size:16 final size:17
Alignment explanation
Indices: 49870675--49870708 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
49870665 TATAAAGTTA
49870675 ATATTTACCTTATTACT
1 ATATTTACCTTATTACT
49870692 ATATTTACCTT-TTACT
1 ATATTTACCTTATTACT
49870708 A
1 A
49870709 ATAAGTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATTTACCTTATTACT
Found at i:49875222 original size:41 final size:43
Alignment explanation
Indices: 49875175--49875280 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
49875165 GGTGCCACTA
* * *
49875175 TCCCAGACAGGGTCTTATACGA-CTCAT-A-TACGATGTCAATG
1 TCCCAGACATGGTCTTACACGATCTC-TCACTACGATGCCAATG
*
49875216 TCCCAGACATGGTCTTACACGATCTCTCACTTCGATGCCAATG
1 TCCCAGACATGGTCTTACACGATCTCTCACTACGATGCCAATG
49875259 TCCCAGACATGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGA
49875281 AATCACATCT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
41 21 0.36
42 4 0.07
43 33 0.57
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGATCTCTCACTACGATGCCAATG
Found at i:49882900 original size:11 final size:11
Alignment explanation
Indices: 49882880--49882909 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
49882870 TAAAAAATAA
49882880 AAAAAGTATTTT
1 AAAAA-TATTTT
49882892 AAAAATATTTT
1 AAAAATATTTT
49882903 AAAAATA
1 AAAAATA
49882910 ATAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:49888321 original size:44 final size:44
Alignment explanation
Indices: 49888263--49888365 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 44
49888253 AAATATATTT
* * *
49888263 ATTTATA-A-TAACTATTTACAATGCATTTAAAATTTTAGATTA
1 ATTTATATATTAACTATTTAAAATACATTTAAAATTTTAGATCA
* *
49888305 ATTTATATATTAACTATTTAAAATATATTTAAAATTTTATATCA
1 ATTTATATATTAACTATTTAAAATACATTTAAAATTTTAGATCA
* *
49888349 ATTTATATTTTATCTAT
1 ATTTATATATTAACTAT
49888366 GGTTATATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 7 0.13
43 1 0.02
44 44 0.85
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (44 bp):
ATTTATATATTAACTATTTAAAATACATTTAAAATTTTAGATCA
Found at i:49894674 original size:30 final size:30
Alignment explanation
Indices: 49894617--49894674 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
49894607 GATTTTTGAA
* * *
49894617 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGAACCAAATTTTT
*
49894647 AATATTTACAAAAAGAGTAACCAAATTT
1 AATATTTACAAAAAGAGGAACCAAATTT
49894675 AAAAACAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGAACCAAATTTTT
Found at i:49897228 original size:30 final size:30
Alignment explanation
Indices: 49897171--49897228 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
49897161 GCTTTTGGAA
* *
49897171 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
49897201 AATATTTACAAAAAGA-GCAACCAAATTT
1 AATATTTACAAAAAGAGGC-ACCAAATTT
49897229 AAACACAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:49902920 original size:16 final size:16
Alignment explanation
Indices: 49902899--49902937 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
49902889 TAACATGATC
*
49902899 TTTACTTTCTTCTTTA
1 TTTACTTTCTTATTTA
* *
49902915 TTTACTCTCTTATTTG
1 TTTACTTTCTTATTTA
49902931 TTTACTT
1 TTTACTT
49902938 ACTTGCTTAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTACTTTCTTATTTA
Found at i:49903301 original size:50 final size:50
Alignment explanation
Indices: 49903240--49903346 Score: 117
Period size: 50 Copynumber: 2.1 Consensus size: 50
49903230 ACATGAGAGT
* * * * * * *
49903240 TCTCATATCGGTGCCCATGCCATGTCCTAGACGTGGTCTTACG-GAGGACC
1 TCTCATATCGGTACCAACGCAATGTCCCAAACATGGTCTTACGTG-GGACC
* *
49903290 TCTCATCTCGGTACCAACGCAATGTCCCAAACATGGTCTTATGTGGGACC
1 TCTCATATCGGTACCAACGCAATGTCCCAAACATGGTCTTACGTGGGACC
49903340 TCTCATA
1 TCTCATA
49903347 ACCTCAATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
50 45 0.98
51 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TCTCATATCGGTACCAACGCAATGTCCCAAACATGGTCTTACGTGGGACC
Found at i:49914578 original size:3 final size:3
Alignment explanation
Indices: 49914563--49914621 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
49914553 AGGTTTCTTG
*
49914563 TGA TGA TGG TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
49914611 TGA TGA TGA TG
1 TGA TGA TGA TG
49914622 TAGAAATATA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:49917108 original size:27 final size:27
Alignment explanation
Indices: 49917078--49917143 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
49917068 CCAGGCTTAG
* * * *
49917078 TGGCAAACACTAACTTGCCAGACCTAT
1 TGGCTAACACCAACTCGCCAAACCTAT
*
49917105 TGGCTAACACCAGCTCGCCAAACCTAT
1 TGGCTAACACCAACTCGCCAAACCTAT
49917132 TGGCTAACACCA
1 TGGCTAACACCA
49917144 GTTCACCAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.33, G:0.15, T:0.20
Consensus pattern (27 bp):
TGGCTAACACCAACTCGCCAAACCTAT
Found at i:49917152 original size:27 final size:27
Alignment explanation
Indices: 49917099--49917152 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
49917089 AACTTGCCAG
*
49917099 ACCTATTGGCTAACACCAGCTCGCCAA
1 ACCTATTGGCTAACACCAGCTCACCAA
*
49917126 ACCTATTGGCTAACACCAGTTCACCAA
1 ACCTATTGGCTAACACCAGCTCACCAA
49917153 CCATACTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.35, G:0.13, T:0.20
Consensus pattern (27 bp):
ACCTATTGGCTAACACCAGCTCACCAA
Found at i:49919124 original size:50 final size:50
Alignment explanation
Indices: 49919036--49919271 Score: 382
Period size: 50 Copynumber: 4.7 Consensus size: 50
49919026 ATTTGGGTAA
* *
49919036 AGAGATCCCTTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
49919086 AGAGGTCCCATGTAAGACCATGTCTGGGACATGTCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
49919136 AGAGGTCCCATGTAAGACCATGTCTGGGGCATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
49919186 AGATGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
49919236 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
49919272 TTTTGCATGT
Statistics
Matches: 173, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 143 0.83
51 30 0.17
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:49922628 original size:24 final size:22
Alignment explanation
Indices: 49922597--49922645 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 22
49922587 AACAATAAGA
49922597 AAATAAATA-AAGGAAAATTAAAT
1 AAATAAATACAA-G-AAATTAAAT
49922620 AAATGAAATAGCAAGAAATTAAAT
1 AAAT-AAATA-CAAGAAATTAAAT
49922644 AA
1 AA
49922646 GAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
23 4 0.17
24 16 0.70
25 1 0.04
26 2 0.09
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.20
Consensus pattern (22 bp):
AAATAAATACAAGAAATTAAAT
Found at i:49924816 original size:30 final size:33
Alignment explanation
Indices: 49924747--49924816 Score: 110
Period size: 34 Copynumber: 2.2 Consensus size: 33
49924737 TTGATTTTTC
49924747 TCCATTCTGTTCCCTATGTTGCGACATTGAATCA
1 TCCATTCTGTTCCCTATGTTGCGACA-TGAATCA
49924781 TCCATTCTGTTCCCTATGTTGCGAC-T-AAT-A
1 TCCATTCTGTTCCCTATGTTGCGACATGAATCA
49924811 TCCATT
1 TCCATT
49924817 TAGTATGCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
30 7 0.19
31 3 0.08
32 1 0.03
34 25 0.69
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (33 bp):
TCCATTCTGTTCCCTATGTTGCGACATGAATCA
Found at i:49926773 original size:25 final size:25
Alignment explanation
Indices: 49926745--49926807 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
49926735 CAGCTCGTAT
*
49926745 GAGCTTACCGTTATTCAGATCGGAG
1 GAGCTTACCGTTATTCAGATCAGAG
* * *
49926770 GAGCCTACCGCTATTCAGTTCAGAG
1 GAGCTTACCGTTATTCAGATCAGAG
*
49926795 GAGCTTATCGTTA
1 GAGCTTACCGTTA
49926808 CAGCTCGTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGATCAGAG
Found at i:49937296 original size:29 final size:29
Alignment explanation
Indices: 49937239--49937300 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
49937229 TTTAAATAAA
*
49937239 TATGGACTTTTATTTATGATTTGGATTTT
1 TATGGACTTTTATTGATGATTTGGATTTT
*
49937268 TATGGAC-TTTATTGCT-ATTTGTGACTTTT
1 TATGGACTTTTATTGATGATTTG-GA-TTTT
49937297 TATG
1 TATG
49937301 TTAAATTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 5 0.17
28 9 0.31
29 15 0.52
ACGTcount: A:0.19, C:0.06, G:0.18, T:0.56
Consensus pattern (29 bp):
TATGGACTTTTATTGATGATTTGGATTTT
Found at i:49938264 original size:16 final size:16
Alignment explanation
Indices: 49938212--49938291 Score: 81
Period size: 16 Copynumber: 4.9 Consensus size: 16
49938202 TTACTAAGAC
*
49938212 AACTATAGATCGTGAAA
1 AACTATAGATAGTG-AA
* * * *
49938229 AACTATAGGTTGAGAG
1 AACTATAGATAGTGAA
49938245 AACTATAGACT-GTGAA
1 AACTATAGA-TAGTGAA
49938261 AACTATAGATAGTGAA
1 AACTATAGATAGTGAA
*
49938277 AACGATAGATAGTGA
1 AACTATAGATAGTGA
49938292 GACAAGTGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
15 1 0.02
16 40 0.75
17 12 0.23
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.24
Consensus pattern (16 bp):
AACTATAGATAGTGAA
Found at i:49940125 original size:20 final size:21
Alignment explanation
Indices: 49940096--49940145 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
49940086 AATTAGGTTT
49940096 GGTT-AAAAGGG-TGTTTTAA
1 GGTTAAAAAGGGATGTTTTAA
* *
49940115 TGTTAAAAAGGGATTTTTTTAA
1 GGTTAAAAAGGGA-TGTTTTAA
49940137 GGTTAAAAA
1 GGTTAAAAA
49940146 CTGGCCATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 7 0.28
22 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (21 bp):
GGTTAAAAAGGGATGTTTTAA
Found at i:49952137 original size:13 final size:13
Alignment explanation
Indices: 49952119--49952143 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49952109 ACAAATGATA
49952119 AAATTTTCACACG
1 AAATTTTCACACG
49952132 AAATTTTCACAC
1 AAATTTTCACAC
49952144 ATAAATTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:49958817 original size:44 final size:43
Alignment explanation
Indices: 49958735--49958858 Score: 121
Period size: 44 Copynumber: 2.9 Consensus size: 43
49958725 TACAATGCCT
* * *
49958735 ACATCCCAAAC-GAGGTTTTACATGAAATCTAATATCGATACC-
1 ACATCCCAGACAG-GGTCTTACACGAAATCTAATATCGATACCA
* *
49958777 ACTGTCCCAGACAGGGTCTTACACGTAAATCTCAAT-TCGATGCCA
1 AC-ATCCCAGACAGGGTCTTACACG-AAATCT-AATATCGATACCA
*
49958822 ACATCCCAGACATGGTCTTACACGAAATC-ACATATCG
1 ACATCCCAGACAGGGTCTTACACGAAATCTA-ATATCG
49958859 GAATCCTATG
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
41 1 0.01
42 4 0.06
43 24 0.35
44 34 0.50
45 5 0.07
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (43 bp):
ACATCCCAGACAGGGTCTTACACGAAATCTAATATCGATACCA
Found at i:49959608 original size:18 final size:18
Alignment explanation
Indices: 49959585--49959626 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
49959575 AGCAACGATC
*
49959585 TCAAAAACGTAAAAATTA
1 TCAAAAACATAAAAATTA
49959603 TCAAAAACATAAAAATTA
1 TCAAAAACATAAAAATTA
49959621 TCAAAA
1 TCAAAA
49959627 TCGAACAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.64, C:0.12, G:0.02, T:0.21
Consensus pattern (18 bp):
TCAAAAACATAAAAATTA
Found at i:49964374 original size:32 final size:32
Alignment explanation
Indices: 49964333--49964397 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
49964323 TAAGGACATG
49964333 CTTAGGTTTGTCTACTAATAAAGTTATCTTTC
1 CTTAGGTTTGTCTACTAATAAAGTTATCTTTC
* *
49964365 CTTAGGTTTGTCTACTAATAAATTTGTCTTTC
1 CTTAGGTTTGTCTACTAATAAAGTTATCTTTC
49964397 C
1 C
49964398 GGATCATGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (32 bp):
CTTAGGTTTGTCTACTAATAAAGTTATCTTTC
Found at i:49971487 original size:15 final size:15
Alignment explanation
Indices: 49971467--49971506 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
49971457 TTTGAATCAC
49971467 TTCAGGTTCAGGTCA
1 TTCAGGTTCAGGTCA
*
49971482 TTCAGGTT-GGGTCA
1 TTCAGGTTCAGGTCA
49971496 TCTCAGGTTCA
1 T-TCAGGTTCA
49971507 AATATCATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.17, C:0.20, G:0.28, T:0.35
Consensus pattern (15 bp):
TTCAGGTTCAGGTCA
Found at i:50009364 original size:25 final size:25
Alignment explanation
Indices: 50009289--50009356 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
50009279 CTGTATATGT
* * *
50009289 ATGCTCCCAAGAGCTGTGAATC-GAA
1 ATGCTCACACGAGTTGTGAATCAG-A
* *
50009314 ATGCTCACATGAGTTGTGAATTAGA
1 ATGCTCACACGAGTTGTGAATCAGA
50009339 ATGCTCACACGAGTTGTG
1 ATGCTCACACGAGTTGTG
50009357 GGTCAGAACG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (25 bp):
ATGCTCACACGAGTTGTGAATCAGA
Found at i:50022289 original size:27 final size:27
Alignment explanation
Indices: 50022079--50022304 Score: 307
Period size: 27 Copynumber: 8.4 Consensus size: 27
50022069 CCCTAAAATA
* *
50022079 GGTAAAATGACCAAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
50022106 GGTAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
50022133 GGTAAAATGACCGAAATACCTCTATAA
1 GGTAAAATGACCGAAATACCCCTATAG
50022160 GGTAAAATGACCGAAATAACCCC-ATAG
1 GGTAAAATGACCGAAAT-ACCCCTATAG
* *
50022187 GGTAAAATGACCGAAATACCGCTATTG
1 GGTAAAATGACCGAAATACCCCTATAG
*
50022214 GGTAAAAATGACCAAAATACCCC-ATAG
1 GGT-AAAATGACCGAAATACCCCTATAG
50022241 GGTAAAATGACTC-AAATACCCCTATAG
1 GGTAAAATGAC-CGAAATACCCCTATAG
*
50022268 GGTAAAATGACCGAAATACCCCCA-AG
1 GGTAAAATGACCGAAATACCCCTATAG
*
50022294 GGTAAGATGAC
1 GGTAAAATGAC
50022305 TGTTATACCC
Statistics
Matches: 178, Mismatches: 15, Indels: 13
0.86 0.07 0.06
Matches are distributed among these distances:
26 34 0.19
27 123 0.69
28 21 0.12
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:50032778 original size:25 final size:25
Alignment explanation
Indices: 50032747--50032812 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
50032737 AACATTAAAC
*
50032747 TTAATATAATATTAAGATAATCACT-
1 TTAATATAATATTAAGAAAAT-ACTA
*
50032772 TTAATATTAA-ATTAATAAAATACTA
1 TTAATA-TAATATTAAGAAAATACTA
*
50032797 TTAAGATAAGTATTAA
1 TTAATATAA-TATTAA
50032813 ATTAAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
24 6 0.18
25 20 0.59
26 8 0.24
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (25 bp):
TTAATATAATATTAAGAAAATACTA
Found at i:50041147 original size:24 final size:21
Alignment explanation
Indices: 50041119--50041162 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 21
50041109 TTTATCAAGA
50041119 TAAATCTTAGATTAAATATAATAT
1 TAAATCTT--ATTAAA-ATAATAT
50041143 TAAATCTTATTAAAATAATA
1 TAAATCTTATTAAAATAATA
50041163 GAATGTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 6 0.30
24 8 0.40
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (21 bp):
TAAATCTTATTAAAATAATAT
Found at i:50055596 original size:104 final size:103
Alignment explanation
Indices: 50055405--50055775 Score: 618
Period size: 104 Copynumber: 3.6 Consensus size: 103
50055395 TGTATATAAA
** * *
50055405 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
50055469 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
50055509 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
*
50055574 TTGAAATGAAAAGGGGGTTGCTATGTTCTGATTCCCCCG
65 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
50055613 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
50055678 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* **
50055717 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
50055776 ATAACAGTTA
Statistics
Matches: 255, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
103 29 0.11
104 184 0.72
105 41 0.16
106 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:50065029 original size:41 final size:41
Alignment explanation
Indices: 50064966--50065045 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
50064956 TGATCGAATG
* *
50064966 TAATACAGACCTTACGTCTAGCAGGCTTGATGCCGGTGAAA
1 TAATACAGACCTTACGTCTAGCAGACTTAATGCCGGTGAAA
* * *
50065007 TAATTCAGACTTTACGTTTAGCAGACTTAATGCCGGTGA
1 TAATACAGACCTTACGTCTAGCAGACTTAATGCCGGTGA
50065046 TACATTTCGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (41 bp):
TAATACAGACCTTACGTCTAGCAGACTTAATGCCGGTGAAA
Found at i:50065070 original size:41 final size:41
Alignment explanation
Indices: 50064978--50065071 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 41
50064968 ATACAGACCT
* * * *
50064978 TACGTCTAGCAGGCTTGATGCCGGTGAAATAATTCAGACTT
1 TACGTCTAGCAGACTTAATGCCGGTGAAACAATTCAGACTA
* * * *
50065019 TACGTTTAGCAGACTTAATGCCGGTGATACATTTCGGACTA
1 TACGTCTAGCAGACTTAATGCCGGTGAAACAATTCAGACTA
*
50065060 TAGGTCTAGCAG
1 TACGTCTAGCAG
50065072 GTTAAAAACC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (41 bp):
TACGTCTAGCAGACTTAATGCCGGTGAAACAATTCAGACTA
Found at i:50065421 original size:2 final size:2
Alignment explanation
Indices: 50065414--50065438 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50065404 TGCATTTGAG
50065414 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
50065439 GATGTACTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50065504 original size:11 final size:11
Alignment explanation
Indices: 50065488--50065528 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
50065478 TATTCAAATG
50065488 TATGTATTAGC
1 TATGTATTAGC
* **
50065499 TATGTATAATA
1 TATGTATTAGC
50065510 TATGTATTAGC
1 TATGTATTAGC
50065521 TATGTATT
1 TATGTATT
50065529 CAGGTATAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.49
Consensus pattern (11 bp):
TATGTATTAGC
Found at i:50065609 original size:18 final size:19
Alignment explanation
Indices: 50065585--50065635 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
50065575 AATGTGATTG
50065585 GTATATATGTGCATGATCAA
1 GTATATATGTGCATGAT-AA
**
50065605 -T-TATATGCACATGATAA
1 GTATATATGTGCATGATAA
50065622 GTATATATGTGCAT
1 GTATATATGTGCAT
50065636 TCAGATGTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 2 0.08
18 13 0.52
19 10 0.40
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (19 bp):
GTATATATGTGCATGATAA
Found at i:50069305 original size:3 final size:3
Alignment explanation
Indices: 50069238--50069288 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
50069228 ATTAAAGTTG
50069238 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
50069286 TAA
1 TAA
50069289 GGATGATGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:50079696 original size:54 final size:54
Alignment explanation
Indices: 50079569--50079678 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
50079559 ATTCTAAATC
50079569 AATATCTGACTCACATTGTACCCGTTTAGCCTGTAGCATCTCATAATTTTTCTG
1 AATATCTGACTCACATTGTACCCGTTTAGCCTGTAGCATCTCATAATTTTTCTG
*
50079623 AATATCTGACTCACATTGTACCCGTTTAGCCTGTAGCATCTCATCATTTTTCTG
1 AATATCTGACTCACATTGTACCCGTTTAGCCTGTAGCATCTCATAATTTTTCTG
50079677 AA
1 AA
50079679 CTTCATATAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (54 bp):
AATATCTGACTCACATTGTACCCGTTTAGCCTGTAGCATCTCATAATTTTTCTG
Found at i:50091707 original size:11 final size:10
Alignment explanation
Indices: 50091664--50091712 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
50091654 AGCAATTTAA
50091664 TTTTTTTCTT
1 TTTTTTTCTT
* *
50091674 TTATGTTCTT
1 TTTTTTTCTT
**
50091684 TTAACTTTCTT
1 TT-TTTTTCTT
50091695 TTTTTTTCTT
1 TTTTTTTCTT
50091705 TTTTTTTC
1 TTTTTTTC
50091713 AATTCTCTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
10 24 0.75
11 8 0.25
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:50099346 original size:51 final size:51
Alignment explanation
Indices: 50099264--50099360 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
50099254 GTGGCGACAA
* * *
50099264 TATATGGCATAAGACCATAGATAAAAGAGGCTATGATAGTTTGGTATAAGG
1 TATATGGCATAAGACCATAAATAAAAGAGGCTATGACAATTTGGTATAAGG
* **
50099315 TATATGGCGTAAGACTGTAAATGAAAA-AGGCTATGACAATTTGGTA
1 TATATGGCATAAGACCATAAAT-AAAAGAGGCTATGACAATTTGGTA
50099361 AGTACGTAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
51 35 0.90
52 4 0.10
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (51 bp):
TATATGGCATAAGACCATAAATAAAAGAGGCTATGACAATTTGGTATAAGG
Found at i:50100525 original size:29 final size:28
Alignment explanation
Indices: 50100493--50100636 Score: 101
Period size: 29 Copynumber: 5.0 Consensus size: 28
50100483 TAGGTGTCCT
50100493 TTTAATAAAGATAGCCAC-AAGGACATCCA
1 TTTAAT-AAGATAGCCACAAAGG-CATCCA
* *
50100522 TTTAACTGAGATAGCCACAAAGGCATCCT
1 TTTAA-TAAGATAGCCACAAAGGCATCCA
* * * * *
50100551 TTTAATTGAGATATCCATAAATGCATCCT
1 TTTAA-TAAGATAGCCACAAAGGCATCCA
* * * *
50100580 TTTAACAGAGATTGCCACAAAGGAATTCA
1 TTTAATA-AGATAGCCACAAAGGCATCCA
** *
50100609 TTTAATAGAGGCAGCCATAAAGGCATCC
1 TTTAATA-AGATAGCCACAAAGGCATCC
50100637 TTTTTAACAG
Statistics
Matches: 90, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
29 85 0.94
30 5 0.06
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (28 bp):
TTTAATAAGATAGCCACAAAGGCATCCA
Found at i:50100555 original size:58 final size:58
Alignment explanation
Indices: 50100489--50100650 Score: 164
Period size: 58 Copynumber: 2.8 Consensus size: 58
50100479 CACGTAGGTG
* *
50100489 TCCTTTTAATAAAGATAGCCA-CAAGGACATCCATTTAACTGAGATAGCCACAAAGGCA
1 TCCTTTTAATAAAGATAGCCATAAAGG-CATCCATTTAACAGAGATAGCCACAAAGGCA
** * * * * *
50100547 TCCTTTTAATTGAGATATCCATAAATGCATCCTTTTAACAGAGATTGCCACAAAGGAA
1 TCCTTTTAATAAAGATAGCCATAAAGGCATCCATTTAACAGAGATAGCCACAAAGGCA
* * * ** *
50100605 TTCATTTAATAGAGGCAGCCATAAAGGCATCCTTTTTAACAGAGAT
1 TCCTTTTAATAAAGATAGCCATAAAGGCATCC-ATTTAACAGAGAT
50100651 TTCTATAAAG
Statistics
Matches: 86, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
58 70 0.81
59 16 0.19
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (58 bp):
TCCTTTTAATAAAGATAGCCATAAAGGCATCCATTTAACAGAGATAGCCACAAAGGCA
Found at i:50100611 original size:87 final size:89
Alignment explanation
Indices: 50100489--50100690 Score: 223
Period size: 88 Copynumber: 2.3 Consensus size: 89
50100479 CACGTAGGTG
* *
50100489 TCCTTTTAATAAAGATAGCCAC-AAGGACATCCATTTAACT-GAGATAGCCACAAAGGCATCC-T
1 TCCTTTTAATAGAGATAGCCACAAAGGACATCCATTTAA-TAGAGACAGCCACAAAGGCATCCTT
** *
50100551 TTTAATTGAGATATCCATAAATGCA
65 TTTAACAGAGATATCCATAAAGGCA
* * * * *
50100576 TCCTTTTAACAGAGATTGCCACAAAGGA-ATTCATTTAATAGAGGCAGCCATAAAGGCATCCTTT
1 TCCTTTTAATAGAGATAGCCACAAAGGACATCCATTTAATAGAGACAGCCACAAAGGCATCCTTT
* * *
50100640 TTAACAGAGATTTCTATAAAGGCT
66 TTAACAGAGATATCCATAAAGGCA
* * *
50100664 TCCTTATAGTAGAGATCGCCACAAAGG
1 TCCTTTTAATAGAGATAGCCACAAAGG
50100691 CTTCCTTATA
Statistics
Matches: 95, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
86 1 0.01
87 46 0.48
88 48 0.51
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (89 bp):
TCCTTTTAATAGAGATAGCCACAAAGGACATCCATTTAATAGAGACAGCCACAAAGGCATCCTTT
TTAACAGAGATATCCATAAAGGCA
Found at i:50100677 original size:59 final size:58
Alignment explanation
Indices: 50100511--50100651 Score: 165
Period size: 58 Copynumber: 2.4 Consensus size: 58
50100501 AGATAGCCAC
* * * * * * * ** *
50100511 AAGGACATCCATTTAACTGAGATAGCCACAAAGGCATCCTTTTAATTGAGATATCCATA
1 AAGG-CATCCTTTTAACAGAGATTGCCACAAAGGAATTCATTTAATAGAGGCAGCCATA
*
50100570 AATGCATCCTTTTAACAGAGATTGCCACAAAGGAATTCATTTAATAGAGGCAGCCATA
1 AAGGCATCCTTTTAACAGAGATTGCCACAAAGGAATTCATTTAATAGAGGCAGCCATA
50100628 AAGGCATCCTTTTTAACAGAGATT
1 AAGGCATCC-TTTTAACAGAGATT
50100652 TCTATAAAGG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
58 52 0.75
59 17 0.25
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (58 bp):
AAGGCATCCTTTTAACAGAGATTGCCACAAAGGAATTCATTTAATAGAGGCAGCCATA
Found at i:50100745 original size:29 final size:29
Alignment explanation
Indices: 50100657--50100759 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
50100647 AGATTTCTAT
** * *
50100657 AAAGGCTTCCTTATAGTAGAGATCGCCAC
1 AAAGGCTTCCTTATAACAGAAATAGCCAC
* *
50100686 AAAGGCTTCCTTATAACA-AATATAACTAC
1 AAAGGCTTCCTTATAACAGAA-ATAGCCAC
** *
50100715 AAAGATTTCCTTATAACAGAAATTGCCAC
1 AAAGGCTTCCTTATAACAGAAATAGCCAC
* *
50100744 AAGGGGTTCCTTATAA
1 AAAGGCTTCCTTATAA
50100760 TAGGGAGTAC
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
28 1 0.02
29 55 0.95
30 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (29 bp):
AAAGGCTTCCTTATAACAGAAATAGCCAC
Found at i:50101220 original size:16 final size:17
Alignment explanation
Indices: 50101187--50101221 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
50101177 TTTAAATGTC
50101187 ATTATTAGATTGGTTTT
1 ATTATTAGATTGGTTTT
50101204 ATTATTAGATT-GTTTT
1 ATTATTAGATTGGTTTT
50101220 AT
1 AT
50101222 AGTAGTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (17 bp):
ATTATTAGATTGGTTTT
Found at i:50104172 original size:39 final size:39
Alignment explanation
Indices: 50104114--50104216 Score: 199
Period size: 39 Copynumber: 2.7 Consensus size: 39
50104104 GAGTCGTCTA
50104114 AAAG-GGTCCGTTGGGACTAAAAACATGAAACTCAAGAT
1 AAAGCGGTCCGTTGGGACTAAAAACATGAAACTCAAGAT
50104152 AAAGCGGTCCGTTGGGACTAAAAACATGAAACTCAAGAT
1 AAAGCGGTCCGTTGGGACTAAAAACATGAAACTCAAGAT
50104191 AAAGCGGTCCGTTGGGACTAAAAACA
1 AAAGCGGTCCGTTGGGACTAAAAACA
50104217 CGAATCTTTG
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.06
39 60 0.94
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.17
Consensus pattern (39 bp):
AAAGCGGTCCGTTGGGACTAAAAACATGAAACTCAAGAT
Found at i:50104476 original size:26 final size:26
Alignment explanation
Indices: 50104404--50104479 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
50104394 AATTTCCATA
*
50104404 AAAGGACACCTTTATGGCTAACTCTG
1 AAAGGACACCTTTATGGCTATCTCTG
*
50104430 AAAGGACACCTTTGTGGCTATCTCTG
1 AAAGGACACCTTTATGGCTATCTCTG
** *
50104456 AAAGGATTCCTTTATGACTATCTC
1 AAAGGACACCTTTATGGCTATCTC
50104480 AGTTAAAAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
AAAGGACACCTTTATGGCTATCTCTG
Found at i:50104600 original size:29 final size:29
Alignment explanation
Indices: 50104464--50104588 Score: 205
Period size: 29 Copynumber: 4.3 Consensus size: 29
50104454 TGAAAGGATT
* *
50104464 CCTTTATGACTATCTCAGTTAAAAGTGAG
1 CCTTTGTGGCTATCTCAGTTAAAAGTGAG
*
50104493 CCTTTGTGACTATCTCAGTTAAAAGTGAG
1 CCTTTGTGGCTATCTCAGTTAAAAGTGAG
*
50104522 CCTTTGTGGCTATCTCAGTTAAAAGTGGG
1 CCTTTGTGGCTATCTCAGTTAAAAGTGAG
*
50104551 CATTTGTGGCTATCTCAGTTAAAAGTGAG
1 CCTTTGTGGCTATCTCAGTTAAAAGTGAG
50104580 CCTTTGTGG
1 CCTTTGTGG
50104589 TGATCTTTGT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (29 bp):
CCTTTGTGGCTATCTCAGTTAAAAGTGAG
Found at i:50104610 original size:29 final size:29
Alignment explanation
Indices: 50104578--50104661 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 29
50104568 GTTAAAAGTG
* *
50104578 AGCCTTTGTGGTGATCTTTGTTATAAGAA
1 AGCCTTTGTGGAGATCTCTGTTATAAGAA
* *
50104607 AGCCTTTGTAGAGATCTCCGTTATAAGAA
1 AGCCTTTGTGGAGATCTCTGTTATAAGAA
* * *
50104636 AGCCTTTGCGGCGATCCCTGTTATAA
1 AGCCTTTGTGGAGATCTCTGTTATAA
50104662 AGATGTCTTG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (29 bp):
AGCCTTTGTGGAGATCTCTGTTATAAGAA
Found at i:50104615 original size:58 final size:58
Alignment explanation
Indices: 50104464--50104615 Score: 180
Period size: 58 Copynumber: 2.6 Consensus size: 58
50104454 TGAAAGGATT
* * **
50104464 CCTTTATGACTATCTCAGTTAAAAGTGAGCCTTTGTGACTATCTCAGTTAAAAGTGAG
1 CCTTTGTGGCTATCTCAGTTAAAAGAAAGCCTTTGTGACTATCTCAGTTAAAAGTGAG
*** * *
50104522 CCTTTGTGGCTATCTCAGTTAAAAGTGGGCATTTGTGGCTATCTCAGTTAAAAGTGAG
1 CCTTTGTGGCTATCTCAGTTAAAAGAAAGCCTTTGTGACTATCTCAGTTAAAAGTGAG
** *
50104580 CCTTTGTGG-TGATCTTTGTTATAAGAAAGCCTTTGT
1 CCTTTGTGGCT-ATCTCAGTTAAAAGAAAGCCTTTGT
50104616 AGAGATCTCC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 1 0.01
58 80 0.99
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (58 bp):
CCTTTGTGGCTATCTCAGTTAAAAGAAAGCCTTTGTGACTATCTCAGTTAAAAGTGAG
Found at i:50104624 original size:58 final size:57
Alignment explanation
Indices: 50104491--50104661 Score: 155
Period size: 58 Copynumber: 2.9 Consensus size: 57
50104481 GTTAAAAGTG
* * **
50104491 AGCCTTTGTGACTATCTCAGTTAAAAGTGAGCCTTTGTGGCT-ATCTCAGTTAAAAGTG
1 AGCCTTTGTGA-TATCTCAGTTAAAAGTGAGCCTTTGTGG-TGATCTCTGTTATAAGAA
* * * *
50104549 GGCATTTGTGGCTATCTCAGTTAAAAGTGAGCCTTTGTGGTGATCTTTGTTATAAGAA
1 AGCCTTTGT-GATATCTCAGTTAAAAGTGAGCCTTTGTGGTGATCTCTGTTATAAGAA
* * * ** * * *
50104607 AGCCTTTGTAGAGATCTCCGTTATAAGAAAGCCTTTGCGGCGATCCCTGTTATAA
1 AGCCTTTGT-GATATCTCAGTTAAAAGTGAGCCTTTGTGGTGATCTCTGTTATAA
50104662 AGATGTCTTG
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
57 1 0.01
58 88 0.98
59 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (57 bp):
AGCCTTTGTGATATCTCAGTTAAAAGTGAGCCTTTGTGGTGATCTCTGTTATAAGAA
Found at i:50105423 original size:26 final size:26
Alignment explanation
Indices: 50105375--50105424 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
50105365 ACGGTGCCAA
* *
50105375 GGCTACGCCAAGGCAGCTATGCACCG
1 GGCTACGCCAAGGAAGCGATGCACCG
* *
50105401 GGCTATGCCAAGGAAGCGGTGCAC
1 GGCTACGCCAAGGAAGCGATGCAC
50105425 TAGGCTGTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.24, C:0.30, G:0.34, T:0.12
Consensus pattern (26 bp):
GGCTACGCCAAGGAAGCGATGCACCG
Found at i:50105430 original size:26 final size:26
Alignment explanation
Indices: 50105366--50105430 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
50105356 CACTGAGAGA
*
50105366 CGGTGC-CAAGGCTACGCCAAGGCAG
1 CGGTGCACAAGGCTACGCCAAGGAAG
** ** *
50105391 CTATGCACCGGGCTATGCCAAGGAAG
1 CGGTGCACAAGGCTACGCCAAGGAAG
*
50105417 CGGTGCACTAGGCT
1 CGGTGCACAAGGCT
50105431 GTTATGCATA
Statistics
Matches: 29, Mismatches: 10, Indels: 1
0.73 0.25 0.03
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.23, C:0.29, G:0.34, T:0.14
Consensus pattern (26 bp):
CGGTGCACAAGGCTACGCCAAGGAAG
Found at i:50106238 original size:21 final size:21
Alignment explanation
Indices: 50106212--50106275 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
50106202 CGAACACGCC
50106212 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
*
50106233 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTG
*
50106254 AACAGAAGCTCAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
50106275 A
1 A
50106276 TCCACCAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:50112305 original size:12 final size:12
Alignment explanation
Indices: 50112288--50112316 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
50112278 TTGTACAACA
50112288 TTAATATATGTT
1 TTAATATATGTT
50112300 TTAATATATGTT
1 TTAATATATGTT
50112312 TTAAT
1 TTAAT
50112317 TTGGTCTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (12 bp):
TTAATATATGTT
Found at i:50114721 original size:17 final size:18
Alignment explanation
Indices: 50114695--50114728 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50114685 TATCCTAACC
*
50114695 TCCCATTAA-CCACTAAA
1 TCCCACTAACCCACTAAA
50114712 TCCCACTAACCCACTAA
1 TCCCACTAACCCACTAA
50114729 CTCTCAGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (18 bp):
TCCCACTAACCCACTAAA
Found at i:50120623 original size:18 final size:18
Alignment explanation
Indices: 50120600--50120636 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
50120590 TAGAATTATA
*
50120600 GGCCCACATGCCCGTGTG
1 GGCCCACACGCCCGTGTG
50120618 GGCCCACACGCCCGTGTG
1 GGCCCACACGCCCGTGTG
50120636 G
1 G
50120637 TTCACTTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.41, G:0.35, T:0.14
Consensus pattern (18 bp):
GGCCCACACGCCCGTGTG
Found at i:50121455 original size:17 final size:18
Alignment explanation
Indices: 50121430--50121463 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50121420 TATCCTAACC
*
50121430 TCCCTCTAA-CCACTAAA
1 TCCCACTAACCCACTAAA
50121447 TCCCACTAACCCACTAA
1 TCCCACTAACCCACTAA
50121464 CCACTATCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (18 bp):
TCCCACTAACCCACTAAA
Found at i:50128255 original size:74 final size:74
Alignment explanation
Indices: 50128130--50128277 Score: 287
Period size: 74 Copynumber: 2.0 Consensus size: 74
50128120 TTATTAAAAG
50128130 CTTATACGCCACATGACTTATACTTTATTTTATTATTTTATTAAATGTTTAATACAACACCCTAG
1 CTTATACGCCACATGACTTATACTTTATTTTATTATTTTATTAAATGTTTAATACAACACCCTAG
50128195 TTTTACAGA
66 TTTTACAGA
*
50128204 CTTATACGCCACATGACTTATACTTTATTTTATTATTTTATTAAATTTTTAATACAACACCCTAG
1 CTTATACGCCACATGACTTATACTTTATTTTATTATTTTATTAAATGTTTAATACAACACCCTAG
50128269 TTTTACAGA
66 TTTTACAGA
50128278 GTATACGTCA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (74 bp):
CTTATACGCCACATGACTTATACTTTATTTTATTATTTTATTAAATGTTTAATACAACACCCTAG
TTTTACAGA
Found at i:50131136 original size:51 final size:51
Alignment explanation
Indices: 50131007--50131195 Score: 238
Period size: 51 Copynumber: 3.7 Consensus size: 51
50130997 TGAAAGTGAT
* * *
50131007 GGTCACATGTGTAGTACTATGTGCAGGCTATTACGTGTACCGGAA-TG-ATA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAATTGTATC
* * *
50131057 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATTGTTTC
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATTGTATC
* * * * * *
50131108 GATCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATGGTAAC
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATTGTATC
*
50131159 GGTCACATGTGTAGTATTATGTGCAGGCTACTATGTG
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
50131196 AACCAAACAT
Statistics
Matches: 119, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
49 3 0.03
50 39 0.33
51 77 0.65
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATTGTATC
Found at i:50131144 original size:26 final size:26
Alignment explanation
Indices: 50131115--50131195 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
50131105 TTCGATCACG
50131115 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
50131141 TGTGTA-T-CGGATG-GTAACGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
*
50131166 TGTGTAGTATTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
50131192 TGTG
1 TGTG
50131196 AACCAAACAT
Statistics
Matches: 41, Mismatches: 5, Indels: 18
0.64 0.08 0.28
Matches are distributed among these distances:
24 2 0.05
25 17 0.41
26 21 0.51
27 1 0.02
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:50131192 original size:102 final size:101
Alignment explanation
Indices: 50131009--50131193 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
50130999 AAAGTGATGG
* *
50131009 TCACATGTGTAGTACTATGTGCAGGCTATTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCACATGTGTAGTAC
50131074 TATGTGCAGGCTACTATGCGTACCGAATTGTTTCGA
66 TATGTGCAGGCTACTATGCGTACCGAATTGTTTCGA
* * * *
50131110 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGG-ATGGTAACGGTCACATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCACATGTGTAGT
*
50131174 ATTATGTGCAGGCTACTATG
64 ACTATGTGCAGGCTACTATG
50131194 TGAACCAAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.51
102 33 0.44
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGAATTGTTTCGA
Found at i:50131290 original size:45 final size:45
Alignment explanation
Indices: 50131202--50131290 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
50131192 TGTGAACCAA
* * * *
50131202 ACATCATTGGTTAGTAAGGTGGTTGCTATGTGCTGATTTCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
50131247 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
50131291 AGTATCTGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:50134973 original size:35 final size:35
Alignment explanation
Indices: 50134932--50135000 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
50134922 GTAAATTGGA
50134932 AAATGGTAAAACTCGATATATTCGATATTGAAATT
1 AAATGGTAAAACTCGATATATTCGATATTGAAATT
50134967 AAATGGTAAAACTCGATATATTCGATATTGAAAT
1 AAATGGTAAAACTCGATATATTCGATATTGAAAT
50135001 GGAAAATGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.33
Consensus pattern (35 bp):
AAATGGTAAAACTCGATATATTCGATATTGAAATT
Found at i:50137108 original size:33 final size:33
Alignment explanation
Indices: 50137066--50137128 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
50137056 AGAACACTAG
*
50137066 TTGTCGCCATTTAGCCACCGTTGTTCAACCACA
1 TTGTCGCCATTTAGCCACCGTCGTTCAACCACA
50137099 TTGTCGCCATTTAGCCACCGTCGTTCAACC
1 TTGTCGCCATTTAGCCACCGTCGTTCAACC
50137129 GCTATCTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.19, C:0.35, G:0.16, T:0.30
Consensus pattern (33 bp):
TTGTCGCCATTTAGCCACCGTCGTTCAACCACA
Found at i:50144095 original size:22 final size:22
Alignment explanation
Indices: 50144067--50144112 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
50144057 GCAAAAGGAA
* *
50144067 AGGGACGGTGGGGGAGAGGGAG
1 AGGGACGATGGAGGAGAGGGAG
50144089 AGGGACGATGGAGGAGAGGGAG
1 AGGGACGATGGAGGAGAGGGAG
50144111 AG
1 AG
50144113 AATCGGAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.28, C:0.04, G:0.63, T:0.04
Consensus pattern (22 bp):
AGGGACGATGGAGGAGAGGGAG
Found at i:50147681 original size:9 final size:9
Alignment explanation
Indices: 50147653--50147682 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
50147643 AAATTACTTG
50147653 ATTAAATTA
1 ATTAAATTA
*
50147662 ACTAAATTA
1 ATTAAATTA
50147671 ATTAAATTA
1 ATTAAATTA
50147680 ATT
1 ATT
50147683 TCTAAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (9 bp):
ATTAAATTA
Found at i:50153193 original size:18 final size:18
Alignment explanation
Indices: 50153172--50153208 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50153162 CTCATACGAA
50153172 TCTCTTATCTCCAACTAT
1 TCTCTTATCTCCAACTAT
50153190 TCTCTTATCTCCAACTAT
1 TCTCTTATCTCCAACTAT
50153208 T
1 T
50153209 GGGGATCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.32, G:0.00, T:0.46
Consensus pattern (18 bp):
TCTCTTATCTCCAACTAT
Found at i:50153766 original size:38 final size:40
Alignment explanation
Indices: 50153723--50153800 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
50153713 CTTTTTAAGC
50153723 TATTCAATTC-TTT-CTCATTTTAATAGAAACTATTCTCA
1 TATTCAATTCTTTTACTCATTTTAATAGAAACTATTCTCA
* *
50153761 TATTCAGTTCTTTTACTCATTTTAATAGTAACTATTCTCA
1 TATTCAATTCTTTTACTCATTTTAATAGAAACTATTCTCA
50153801 CTGTCGCAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 9 0.25
39 3 0.08
40 24 0.67
ACGTcount: A:0.29, C:0.18, G:0.04, T:0.49
Consensus pattern (40 bp):
TATTCAATTCTTTTACTCATTTTAATAGAAACTATTCTCA
Found at i:50156211 original size:55 final size:55
Alignment explanation
Indices: 50156150--50156260 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
50156140 TAACTTTTAA
50156150 AATTTTTTATTTTAGACACCAATAAAATAAAATTTACAAAATAAACACTTATATT
1 AATTTTTTATTTTAGACACCAATAAAATAAAATTTACAAAATAAACACTTATATT
*
50156205 AATTTTTTATTTTAGACACCAATAAAATAAATTTTACAAAATAAACACTTATATT
1 AATTTTTTATTTTAGACACCAATAAAATAAAATTTACAAAATAAACACTTATATT
50156260 A
1 A
50156261 CATAATTTAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.39
Consensus pattern (55 bp):
AATTTTTTATTTTAGACACCAATAAAATAAAATTTACAAAATAAACACTTATATT
Found at i:50156641 original size:21 final size:20
Alignment explanation
Indices: 50156608--50156646 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
50156598 TATATTGTTG
50156608 CACCAAATCAGCTTTCTTAGC
1 CACCAAATCAGC-TTCTTAGC
* *
50156629 CACCAATTTAGCTTCTTA
1 CACCAAATCAGCTTCTTA
50156647 AACCTTTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (20 bp):
CACCAAATCAGCTTCTTAGC
Found at i:50157700 original size:48 final size:48
Alignment explanation
Indices: 50157639--50157736 Score: 133
Period size: 48 Copynumber: 2.0 Consensus size: 48
50157629 CTTTGGGTTA
* * *
50157639 AAATTGTGCCATTAAATGTTTATCATATCAGGGATTGAAGGAGTTGGT
1 AAATTGTGCCATTAAATATTTATCATATCAAGGATTGAAAGAGTTGGT
* * * *
50157687 AAATTTTGTCATTAGATATTTATCATATCAAGTATTGAAAGAGTTGGT
1 AAATTGTGCCATTAAATATTTATCATATCAAGGATTGAAAGAGTTGGT
50157735 AA
1 AA
50157737 TGGTGGTTCG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (48 bp):
AAATTGTGCCATTAAATATTTATCATATCAAGGATTGAAAGAGTTGGT
Found at i:50157798 original size:59 final size:60
Alignment explanation
Indices: 50157705--50157817 Score: 174
Period size: 59 Copynumber: 1.9 Consensus size: 60
50157695 TCATTAGATA
* *
50157705 TTTATCATATCAAGTATTGAAAGAGTTGGTAATGGTGGTTCGGAGGCGGTGTGTTAAATG
1 TTTATCATATCAAGGATTGAAAGAGTTGGTAATGGTGATTCGGAGGCGGTGTGTTAAATG
* * *
50157765 TTTATCATATC-CGGATTGAAGGAGTTGGTAATGGTGATTCGGAGGTGGTGTGT
1 TTTATCATATCAAGGATTGAAAGAGTTGGTAATGGTGATTCGGAGGCGGTGTGT
50157818 GATAGGGTAG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 37 0.77
60 11 0.23
ACGTcount: A:0.24, C:0.07, G:0.34, T:0.35
Consensus pattern (60 bp):
TTTATCATATCAAGGATTGAAAGAGTTGGTAATGGTGATTCGGAGGCGGTGTGTTAAATG
Found at i:50159053 original size:19 final size:19
Alignment explanation
Indices: 50159014--50159059 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
50159004 AAATTTAGGC
* *
50159014 TTTAATTTATATATTATTA
1 TTTAATTTAGATATTACTA
*
50159033 TTTAATTTAGATCTTACTA
1 TTTAATTTAGATATTACTA
*
50159052 TTTTATTT
1 TTTAATTT
50159060 GAAGCATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTAATTTAGATATTACTA
Found at i:50170689 original size:8 final size:8
Alignment explanation
Indices: 50170678--50170702 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50170668 ATTTCTATAG
50170678 ATAATAAA
1 ATAATAAA
50170686 ATAATAAA
1 ATAATAAA
50170694 ATAATAAA
1 ATAATAAA
50170702 A
1 A
50170703 ATTTACTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
ATAATAAA
Found at i:50171839 original size:13 final size:14
Alignment explanation
Indices: 50171821--50171858 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
50171811 AATGAAAACA
50171821 ATTATATGAAAT-G
1 ATTATATGAAATAG
50171834 ATTATATGAGAATAG
1 ATTATATGA-AATAG
50171849 A-TATATGAAA
1 ATTATATGAAA
50171859 GGGACTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 11 0.48
14 10 0.43
15 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (14 bp):
ATTATATGAAATAG
Found at i:50172582 original size:20 final size:22
Alignment explanation
Indices: 50172548--50172589 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
50172538 CACTTAGTTT
50172548 GTATGTTATTCGGTGTGTTTTG
1 GTATGTTATTCGGTGTGTTTTG
50172570 GTATGTT-TT-GGTGTGTTTTG
1 GTATGTTATTCGGTGTGTTTTG
50172590 AATATGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.55
21 2 0.10
22 7 0.35
ACGTcount: A:0.07, C:0.02, G:0.33, T:0.57
Consensus pattern (22 bp):
GTATGTTATTCGGTGTGTTTTG
Found at i:50174720 original size:43 final size:41
Alignment explanation
Indices: 50174652--50174847 Score: 171
Period size: 43 Copynumber: 4.6 Consensus size: 41
50174642 TAAATTCAGT
* * * **
50174652 GATACGGGGGATCAACACATAGCAACTTCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACACCTTT-ACAATCAAA
* * **
50174694 GATACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGT
1 GATACGG-GGAATCAGCACTTAGCAA-CACCTTTACAATCAAA
*
50174737 GATACGGGGAATCAGCACATT-GCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCAC-TTAGCAACACCTTT-ACAATCAAA
* * *
50174779 TATATGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATA
1 GATACGG-GGAATCAGCACTTAGCAA-CACCTTTACAATCAA-A
* *
50174823 -ATTCGGGGATTCAGCACTTAGCAAC
1 GATACGGGGAATCAGCACTTAGCAAC
50174848 CCCTCGGGGA
Statistics
Matches: 125, Mismatches: 21, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
41 7 0.06
42 51 0.41
43 55 0.44
44 12 0.10
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (41 bp):
GATACGGGGAATCAGCACTTAGCAACACCTTTACAATCAAA
Found at i:50174762 original size:85 final size:85
Alignment explanation
Indices: 50174614--50174851 Score: 300
Period size: 85 Copynumber: 2.8 Consensus size: 85
50174604 ATCCGTTACT
* * * *
50174614 CGGTGGATTCAGTACTTAGCAACCAAC-TTAAATTCAGTGATACGGGGGATCAACACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
**
50174678 TTCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* * *
50174698 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATTGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
*
50174763 CCCTTTCACAATCAAATATA
66 CCCTTTCACAATCAAAGATA
* * * * * * *
50174783 TGGTGGAATCAGCACTTAGCAACCACCTTTAGAA-TCAATAATTCGGGGATTCAGCACTTAGCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTA-AATTCAGTGATACGGGGAATCAACACATAGCAA
50174847 CCCCT
65 CCCCT
50174852 CGGGGAATCT
Statistics
Matches: 134, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
84 24 0.18
85 109 0.81
86 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:50174848 original size:42 final size:42
Alignment explanation
Indices: 50174680--50174848 Score: 159
Period size: 42 Copynumber: 4.0 Consensus size: 42
50174670 ATAGCAACTT
*
50174680 CTTTCACAATCAA-AGATACGGTGGAATCAGCACTTAGCAACCAC
1 CTTT-ACAATCAATA-ATTCGG-GGAATCAGCACTTAGCAACCAC
* * * * *
50174724 CTTTATATTCAGTGATACGGGGAATCAGCACATT-GCAACC-C
1 CTTTACAATCAATAATTCGGGGAATCAGCAC-TTAGCAACCAC
50174765 CTTTCACAATCAA-ATATAT-GGTGGAATCAGCACTTAGCAACCAC
1 CTTT-ACAATCAATA-AT-TCGG-GGAATCAGCACTTAGCAACCAC
* *
50174809 CTTTAGAATCAATAATTCGGGGATTCAGCACTTAGCAACC
1 CTTTACAATCAATAATTCGGGGAATCAGCACTTAGCAACC
50174849 CCTCGGGGAA
Statistics
Matches: 104, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
41 5 0.05
42 48 0.46
43 41 0.39
44 10 0.10
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
CTTTACAATCAATAATTCGGGGAATCAGCACTTAGCAACCAC
Found at i:50180066 original size:43 final size:41
Alignment explanation
Indices: 50179999--50180198 Score: 161
Period size: 43 Copynumber: 4.7 Consensus size: 41
50179989 TAAATTCAGT
* *
50179999 GATACG-GCGAATCAACACATAGCAACCCCTTTCACAATCAAA
1 GATACGTG-GAATCAGCACTTAGCAACCCCTTT-ACAATCAAA
* * * **
50180041 GATACGATGGAATTAGCACTTAGCAACCACCTTTATATTCAGT
1 GATACG-TGGAATCAGCACTTAGCAACC-CCTTTACAATCAAA
* * *
50180084 GATACGAGGAATCAGCACATAGCAACCCTTTTCACAATCAAA
1 GATACGTGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAA
* * *
50180126 TATACTGTGGAATCAGTACTTAGCAACCACCTTTAGAATCAATA
1 GATAC-GTGGAATCAGCACTTAGCAACC-CCTTTACAATCAA-A
** * *
50180170 -ATTTGGGGAATTAGCACTTAGCAACCCCT
1 GATACGTGGAATCAGCACTTAGCAACCCCT
50180199 CGAGGAATCT
Statistics
Matches: 125, Mismatches: 26, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
41 7 0.06
42 52 0.42
43 55 0.44
44 11 0.09
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (41 bp):
GATACGTGGAATCAGCACTTAGCAACCCCTTTACAATCAAA
Found at i:50180118 original size:85 final size:85
Alignment explanation
Indices: 50179971--50180160 Score: 269
Period size: 85 Copynumber: 2.2 Consensus size: 85
50179961 CAGTGGATTA
* *
50179971 AGCATTTAGCAAGCACC-TTAAATTCAGTGATACGGCGAATCAACACATAGCAACCCCTTTCACA
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGCGAATCAACACATAGCAACCCCTTTCACA
*
50180035 ATCAAAGATAC-GATGGAATT
66 ATCAAAGATACTG-TGGAATC
* * *
50180055 AGCACTTAGCAACCACCTTTATATTCAGTGATACGAG-GAATCAGCACATAGCAACCCTTTTCAC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACG-GCGAATCAACACATAGCAACCCCTTTCAC
*
50180119 AATCAAATATACTGTGGAATC
65 AATCAAAGATACTGTGGAATC
*
50180140 AGTACTTAGCAACCACCTTTA
1 AGCACTTAGCAACCACCTTTA
50180161 GAATCAATAA
Statistics
Matches: 95, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
84 15 0.16
85 78 0.82
86 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (85 bp):
AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGCGAATCAACACATAGCAACCCCTTTCACA
ATCAAAGATACTGTGGAATC
Found at i:50180180 original size:85 final size:85
Alignment explanation
Indices: 50180007--50180198 Score: 242
Period size: 85 Copynumber: 2.3 Consensus size: 85
50179997 GTGATACGGC
* *
50180007 GAATCAACACATAGCAACCCCTTTCACAATCAAAGATACGATGGAATTAGCACTTAGCAACCACC
1 GAATCAGCACATAGCAACCCCTTTCACAATCAAAGATACGATGGAATCAGCACTTAGCAACCACC
* * * *
50180072 TTTATATTCAGTGATACGAG
66 TTTAGAATCAATAATACGAG
* * *
50180092 GAATCAGCACATAGCAACCCTTTTCACAATCAAATATACTG-TGGAATCAGTACTTAGCAACCAC
1 GAATCAGCACATAGCAACCCCTTTCACAATCAAAGATAC-GATGGAATCAGCACTTAGCAACCAC
** *
50180156 CTTTAGAATCAATAATTTGGG
65 CTTTAGAATCAATAATACGAG
* *
50180177 GAATTAGCACTTAGCAACCCCT
1 GAATCAGCACATAGCAACCCCT
50180199 CGAGGAATCT
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
85 90 0.99
86 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.25
Consensus pattern (85 bp):
GAATCAGCACATAGCAACCCCTTTCACAATCAAAGATACGATGGAATCAGCACTTAGCAACCACC
TTTAGAATCAATAATACGAG
Found at i:50184486 original size:37 final size:37
Alignment explanation
Indices: 50184445--50184519 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
50184435 AAAGGAAAGG
*
50184445 TTATGGTTATATGTAAAGGCATACTTTGTGTAAGCTT
1 TTATGGTTATATGTAAAGGCACACTTTGTGTAAGCTT
50184482 TTATGGTTATATGTAAAGGCACACTTTGTGTAAGCTT
1 TTATGGTTATATGTAAAGGCACACTTTGTGTAAGCTT
50184519 T
1 T
50184520 CTCGTGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (37 bp):
TTATGGTTATATGTAAAGGCACACTTTGTGTAAGCTT
Found at i:50193795 original size:19 final size:20
Alignment explanation
Indices: 50193771--50193809 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50193761 CATTTGGACT
*
50193771 TTGGTTTT-TTTGTTTTATA
1 TTGGTTTTATTTATTTTATA
50193790 TTGGTTTTATTTATTTTATA
1 TTGGTTTTATTTATTTTATA
50193810 AAATTGGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (20 bp):
TTGGTTTTATTTATTTTATA
Found at i:50203933 original size:12 final size:12
Alignment explanation
Indices: 50203918--50203957 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
50203908 AAAAGAAACT
50203918 TAAAAATTAAAA
1 TAAAAATTAAAA
50203930 TAAATAATT-AAA
1 TAAA-AATTAAAA
*
50203942 TAAAAATAAAAA
1 TAAAAATTAAAA
50203954 TAAA
1 TAAA
50203958 TACACCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 3 0.12
12 18 0.72
13 4 0.16
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (12 bp):
TAAAAATTAAAA
Found at i:50205269 original size:21 final size:21
Alignment explanation
Indices: 50205234--50205275 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50205224 GATACATGGT
**
50205234 AAAAGGTATGTATACTGTTTG
1 AAAAGGTATCAATACTGTTTG
*
50205255 AAAAGGTATCAATACTTTTTG
1 AAAAGGTATCAATACTGTTTG
50205276 TAATTGATTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (21 bp):
AAAAGGTATCAATACTGTTTG
Done.